Minimum Required Columns for topSNPs File？

[laleoarrow]

Hello! Thank you for your fantastic work and contributions. I encountered a bit of confusion regarding the column requirements for the topSNPs file.

Problem Description

In the topSNPs example file, I noticed there are many columns, which makes it unclear which columns are strictly necessary. Could you clarify the minimum required columns for the topSNPs file? For example, would a file containing only significant lead SNPs or significant independent lead SNPs from FUMA be sufficient?

Desired Assistance

If possible, could you provide:

• A clear list of required vs. optional columns for the topSNPs file?
• Confirmation of whether files containing only significant lead SNPs or significant independent lead SNPs from FUMA would meet the requirements?

A simplified example of the topSNPs file format or a list of necessary columns with optional indicators would be incredibly helpful for setting up the data correctly.

Thank you very much for your time and assistance!

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