From c1869b2b82e74f5f5b633ca504dbe3e7966171d3 Mon Sep 17 00:00:00 2001 From: Austin Macdonald Date: Mon, 6 Jan 2025 07:57:08 -0600 Subject: [PATCH] Remove --no-datalad-get in walkthrough Fixes https://github.com/ReproNim/containers/issues/135 --- README.md | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/README.md b/README.md index 04d70ac7..70956c70 100644 --- a/README.md +++ b/README.md @@ -265,6 +265,15 @@ specified in the `.gitmodules`. By freezing into the top-level dataset instead, authors do not need to host a modified version of `///reporonim/containers`. +### Fixup datalad config + +The version of mriqc we are using does not have an option `--no-datalad-get` which is hardcoded +into mriqc config, so we should remove it. + +```bash +datalad run -m "Remove ad-hoc option for mriqc for older frozen version" sed -i -e 's, --no-datalad-get,,g' .datalad/config +``` + ### Running the Containers When we run the bids-mriqc container, it will need a working directory