From 4ba0a9de069c96b54073565ea0c3af39420b38e6 Mon Sep 17 00:00:00 2001 From: Austin Macdonald Date: Fri, 10 Jan 2025 08:14:17 -0600 Subject: [PATCH 1/6] Add Open Brain Consent Fixes: https://github.com/ReproNim/repronim.org/issues/208 --- content/resources/tools/_index.md | 1 + .../tools/open-brain-consent/_index.md | 25 +++++++++++++++++++ 2 files changed, 26 insertions(+) create mode 100644 content/resources/tools/open-brain-consent/_index.md diff --git a/content/resources/tools/_index.md b/content/resources/tools/_index.md index f23664c..06e7b9e 100644 --- a/content/resources/tools/_index.md +++ b/content/resources/tools/_index.md @@ -28,3 +28,4 @@ This section describes core tools and standards produced by ReproNim. For a mor ## Best Practices - [ReproIn](reproin/index.html): Convention and helpers for naming and organization of MRI sequences for turnkey DICOM to BIDS conversion. +- [Open Brain Consent](open-brain-consent/): An "out of the box" consent form template to allow imaging data to be shared as openly as possible while providing adequate guarantees for research participants' privacy. diff --git a/content/resources/tools/open-brain-consent/_index.md b/content/resources/tools/open-brain-consent/_index.md new file mode 100644 index 0000000..473464a --- /dev/null +++ b/content/resources/tools/open-brain-consent/_index.md @@ -0,0 +1,25 @@ +--- +title: "Open Brain Consent" +weight: 120 +--- + +Open Brain Consent is a consent form template for consent form allow imaging data to be shared as openly as possible while providing adequate guarantees for research participants' privacy. + +## Development status + +Open Brain Consent is well-established and mature, with occasional minor updates and new [translations](https://open-brain-consent.readthedocs.io/en/stable/gdpr/ultimate_gdpr.html#translations) are occassionally added. + +## Innovation + +Prior to Open Brain Consent, there was no commonly accepted consent form template for neuroimaging. + +## Citation information + +Bannier E, Barker G, Borghesani V, Broeckx N, Clement P, Emblem KE, Ghosh S, Glerean E, Gorgolewski KJ, Havu M, Halchenko YO, Herholz P, Hespel A, Heunis S, Hu Y, Hu CP, Huijser D, de la Iglesia Vayá M, Jancalek R, Katsaros VK, Kieseler ML, Maumet C, Moreau CA, Mutsaerts HJ, Oostenveld R, Ozturk-Isik E, Pascual Leone Espinosa N, Pellman J, Pernet CR, Pizzini FB, Trbalić AŠ, Toussaint PJ, Visconti di Oleggio Castello M, Wang F, Wang C, Zhu H. The Open Brain Consent: Informing research participants and obtaining consent to share brain imaging data. Hum Brain Mapp. 2021 May;42(7):1945-1951. doi: [10.1002/hbm.25351](https://doi.org/10.1002/hbm.25351). Epub 2021 Feb 1. PMID: 33522661; PMCID: PMC8046140. + +## Links + +- Home Page: https://open-brain-consent.readthedocs.io/ +- GitHub Repository: https://github.com/con/open-brain-consent/ + +## Representative publications From 15acea02536bdd3e8f809bcfa00d08dd747803b0 Mon Sep 17 00:00:00 2001 From: Austin Macdonald Date: Fri, 10 Jan 2025 09:18:31 -0600 Subject: [PATCH 2/6] Fixup spelling and codespell --- content/resources/tools/open-brain-consent/_index.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/content/resources/tools/open-brain-consent/_index.md b/content/resources/tools/open-brain-consent/_index.md index 473464a..95f3300 100644 --- a/content/resources/tools/open-brain-consent/_index.md +++ b/content/resources/tools/open-brain-consent/_index.md @@ -7,7 +7,7 @@ Open Brain Consent is a consent form template for consent form allow imaging dat ## Development status -Open Brain Consent is well-established and mature, with occasional minor updates and new [translations](https://open-brain-consent.readthedocs.io/en/stable/gdpr/ultimate_gdpr.html#translations) are occassionally added. +Open Brain Consent is well-established and mature, with occasional minor updates and new [translations](https://open-brain-consent.readthedocs.io/en/stable/gdpr/ultimate_gdpr.html#translations). ## Innovation @@ -15,7 +15,7 @@ Prior to Open Brain Consent, there was no commonly accepted consent form templat ## Citation information -Bannier E, Barker G, Borghesani V, Broeckx N, Clement P, Emblem KE, Ghosh S, Glerean E, Gorgolewski KJ, Havu M, Halchenko YO, Herholz P, Hespel A, Heunis S, Hu Y, Hu CP, Huijser D, de la Iglesia Vayá M, Jancalek R, Katsaros VK, Kieseler ML, Maumet C, Moreau CA, Mutsaerts HJ, Oostenveld R, Ozturk-Isik E, Pascual Leone Espinosa N, Pellman J, Pernet CR, Pizzini FB, Trbalić AŠ, Toussaint PJ, Visconti di Oleggio Castello M, Wang F, Wang C, Zhu H. The Open Brain Consent: Informing research participants and obtaining consent to share brain imaging data. Hum Brain Mapp. 2021 May;42(7):1945-1951. doi: [10.1002/hbm.25351](https://doi.org/10.1002/hbm.25351). Epub 2021 Feb 1. PMID: 33522661; PMCID: PMC8046140. +Bannier E, Barker G, Borghesani V, Broeckx N, Clement P, Emblem KE, Ghosh S, Glerean E, Gorgolewski KJ, Havu M, Halchenko YO, Herholz P, Hespel A, Heunis S, Hu Y, Hu CP, Huijser D, de la Iglesia Vayá M, Jancalek R, Katsaros VK, Kieseler ML, Maumet C, Moreau CA, Mutsaerts HJ, Oostenveld R, Ozturk-Isik E, Pascual Leone Espinosa N, Pellman J, Pernet CR, Pizzini FB, Trbalić AŠ, Toussaint PJ, Visconti di Oleggio Castello M, Wang F, Wang C, Zhu H. The Open Brain Consent: Informing research participants and obtaining consent to share brain imaging data. Hum Brain Mapp. 2021 May;42(7):1945-1951. doi: [10.1002/hbm.25351](https://doi.org/10.1002/hbm.25351). Epub 2021 Feb 1. PMID: 33522661; PMCID: PMC8046140. ## Links From 0fcb28966d9612850ecd854a01ad7b5801d26e94 Mon Sep 17 00:00:00 2001 From: Austin Macdonald Date: Fri, 10 Jan 2025 14:48:38 -0600 Subject: [PATCH 3/6] codespell workaround Can be removed when fixed: https://github.com/codespell-project/codespell/issues/3617 --- .codespellrc | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/.codespellrc b/.codespellrc index 241d33c..036f247 100644 --- a/.codespellrc +++ b/.codespellrc @@ -1,7 +1,8 @@ [codespell] # Ref: https://github.com/codespell-project/codespell#using-a-config-file -skip = .git*,go.sum,i18n,*.css,.codespellrc +skip = .git*,go.sum,i18n,*.css,.codespellrc,public check-hidden = true # lines with names in publications -ignore-regex = (^- (name|.*\bdoi):.*|fnndsc\.childrens\.harvard\.edu) +# TODO remove codespell:ignore after issue fixed: https://github.com/codespell-project/codespell/issues/3617 +ignore-regex = (^- (name|.*\bdoi):.*|fnndsc\.childrens\.harvard\.edu|.*codespell:ignore.*) # ignore-words-list = From ddbbe24e3c1b814aadb96c3ad6dfb2e0fadab5ce Mon Sep 17 00:00:00 2001 From: Austin Macdonald Date: Fri, 10 Jan 2025 14:49:45 -0600 Subject: [PATCH 4/6] Fix grammar for code review --- content/resources/tools/open-brain-consent/_index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/resources/tools/open-brain-consent/_index.md b/content/resources/tools/open-brain-consent/_index.md index 95f3300..efdc965 100644 --- a/content/resources/tools/open-brain-consent/_index.md +++ b/content/resources/tools/open-brain-consent/_index.md @@ -3,7 +3,7 @@ title: "Open Brain Consent" weight: 120 --- -Open Brain Consent is a consent form template for consent form allow imaging data to be shared as openly as possible while providing adequate guarantees for research participants' privacy. +Open Brain Consent is a consent form template to allow imaging data to be shared as openly as possible while providing adequate guarantees for research participants' privacy. ## Development status From 5b2a87e778146fd6137f2c2404aa93aaa0f8bb1c Mon Sep 17 00:00:00 2001 From: Austin Macdonald Date: Fri, 10 Jan 2025 14:51:20 -0600 Subject: [PATCH 5/6] Fixup: Innovation, remove that it was first, which is not really relevant --- content/resources/tools/open-brain-consent/_index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/resources/tools/open-brain-consent/_index.md b/content/resources/tools/open-brain-consent/_index.md index efdc965..21d1442 100644 --- a/content/resources/tools/open-brain-consent/_index.md +++ b/content/resources/tools/open-brain-consent/_index.md @@ -11,7 +11,7 @@ Open Brain Consent is well-established and mature, with occasional minor updates ## Innovation -Prior to Open Brain Consent, there was no commonly accepted consent form template for neuroimaging. +Open Brain Consent provides consent form template for neuroimaging that is commonly accepted "out of the box". ## Citation information From 1c5b2bd69514132c44d5eb424a843d8dcefe3f24 Mon Sep 17 00:00:00 2001 From: Austin Macdonald Date: Mon, 20 Jan 2025 14:14:08 -0600 Subject: [PATCH 6/6] Update content/resources/tools/open-brain-consent/_index.md --- content/resources/tools/open-brain-consent/_index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/resources/tools/open-brain-consent/_index.md b/content/resources/tools/open-brain-consent/_index.md index 21d1442..73f3426 100644 --- a/content/resources/tools/open-brain-consent/_index.md +++ b/content/resources/tools/open-brain-consent/_index.md @@ -11,7 +11,7 @@ Open Brain Consent is well-established and mature, with occasional minor updates ## Innovation -Open Brain Consent provides consent form template for neuroimaging that is commonly accepted "out of the box". +Open Brain Consent provides a consent form template for neuroimaging that is commonly accepted "out of the box". ## Citation information