Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Struct contents reference from a non-struct array object. #1

Open
kostrykin opened this issue Feb 15, 2022 · 0 comments
Open

Struct contents reference from a non-struct array object. #1

kostrykin opened this issue Feb 15, 2022 · 0 comments

Comments

@kostrykin
Copy link

I'm trying to reproduce the segmentation masks for the GOWT1 datasets which were used for the results reported in the paper. I have followed the steps described in the README.md.

In demo_test_tracker.m I have accordingly changed the line

dataset = 'Fluo-N2DL-HeLa';

to

dataset = 'Fluo-N2DH-GOWT1';

When running demo_test_tracker(), I get the following output:

>> demo_test_tracker()
Building with 'g++'.
Warning: You are using gcc version '9.3.0'. The version of gcc is not supported. The version currently
supported with MEX is '4.9.x'. For a list of currently supported compilers see:
http://www.mathworks.com/support/compilers/current_release. 
> In bia.compile (line 10)
  In demo_test_tracker (line 9) 
MEX completed successfully.
Normalizing: Fluo-N2DH-GOWT1-01Warning: figure JavaFrame property will be obsoleted in a future release. For more information see the
JavaFrame resource on the MathWorks web site. 
> In bia.plot.fig>fullscreen (line 103)
  In bia.plot.fig (line 89)
  In bia.datasets.import.ctc (line 72)
  In demo_test_tracker (line 18) 

Starting pass 1::1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 
Starting pass 2::1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 
ims saved in: data/datasets/Fluo-N2DH-GOWT1-01-norm.mat
gt saved in: data/datasets/Fluo-N2DH-GOWT1-01-GT.mat
Track processing finshed at: 44.92 sec
Normalizing: Fluo-N2DH-GOWT1-02Warning: figure JavaFrame property will be obsoleted in a future release. For more information see the
JavaFrame resource on the MathWorks web site. 
> In bia.plot.fig>fullscreen (line 103)
  In bia.plot.fig (line 89)
  In bia.datasets.import.ctc (line 72)
  In demo_test_tracker (line 18) 

Starting pass 1::1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 
Starting pass 2::1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 
ims saved in: data/datasets/Fluo-N2DH-GOWT1-02-norm.mat
gt saved in: data/datasets/Fluo-N2DH-GOWT1-02-GT.mat
Track processing finshed at: 40.29 sec
Normalizing: test-Fluo-N2DH-GOWT1-01Warning: figure JavaFrame property will be obsoleted in a future release. For more information see the
JavaFrame resource on the MathWorks web site. 
> In bia.plot.fig>fullscreen (line 103)
  In bia.plot.fig (line 89)
  In bia.datasets.import.ctc (line 72)
  In demo_test_tracker (line 18) 

Starting pass 1::1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 
Starting pass 2::1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 
ims saved in: data/datasets/test-Fluo-N2DH-GOWT1-01-norm.mat
gt saved in: data/datasets/test-Fluo-N2DH-GOWT1-01-GT.mat
Track processing finshed at: 40.04 sec
Normalizing: test-Fluo-N2DH-GOWT1-02Warning: figure JavaFrame property will be obsoleted in a future release. For more information see the
JavaFrame resource on the MathWorks web site. 
> In bia.plot.fig>fullscreen (line 103)
  In bia.plot.fig (line 89)
  In bia.datasets.import.ctc (line 72)
  In demo_test_tracker (line 18) 

Starting pass 1::1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 
Starting pass 2::1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 
ims saved in: data/datasets/test-Fluo-N2DH-GOWT1-02-norm.mat
gt saved in: data/datasets/test-Fluo-N2DH-GOWT1-02-GT.mat
Track processing finshed at: 35.37 sec
Warning: figure JavaFrame property will be obsoleted in a future release. For more information see the
JavaFrame resource on the MathWorks web site. 
> In bia.plot.fig>fullscreen (line 103)
  In bia.plot.fig (line 89)
  In bia.datasets.import.ctc_fluo_hela_aug (line 11)
  In demo_test_tracker (line 19) 
Fluo-N2DL-HeLa-01
Warning: data not found at: data/datasets/Fluo-N2DL-HeLa-01-GT.mat 
> In bia.datasets.load (line 68)
  In bia.datasets.import.ctc_fluo_hela_aug (line 16)
  In demo_test_tracker (line 19) 
Warning: data not found at: data/datasets/Fluo-N2DL-HeLa-01-norm.mat 
> In bia.datasets.load>load_ims (line 353)
  In bia.datasets.load (line 82)
  In bia.datasets.import.ctc_fluo_hela_aug (line 16)
  In demo_test_tracker (line 19) 
Warning: data was not loaded for: Fluo-N2DL-HeLa-01 
> In bia.datasets.import.ctc_fluo_hela_aug (line 18)
  In demo_test_tracker (line 19) 
Fluo-N2DL-HeLa-02
Warning: data not found at: data/datasets/Fluo-N2DL-HeLa-02-GT.mat 
> In bia.datasets.load (line 68)
  In bia.datasets.import.ctc_fluo_hela_aug (line 16)
  In demo_test_tracker (line 19) 
Warning: data not found at: data/datasets/Fluo-N2DL-HeLa-02-norm.mat 
> In bia.datasets.load>load_ims (line 353)
  In bia.datasets.load (line 82)
  In bia.datasets.import.ctc_fluo_hela_aug (line 16)
  In demo_test_tracker (line 19) 
Warning: data was not loaded for: Fluo-N2DL-HeLa-02 
> In bia.datasets.import.ctc_fluo_hela_aug (line 18)
  In demo_test_tracker (line 19) 
creating anchors (kmeans)
#### pid:65767 EXPERIMENT: [1-1] [1-2] ####
#################
Fluo-N2DH-GOWT1:: Class id:1, Rescale: 1.00
Warning: data not found at: data/datasets/v1/Fluo-N2DH-GOWT1-01-GT.mat 
> In bia.datasets.load (line 68)
  In cpn.io.get_imdb>prepare_imdb (line 51)
  In cpn.io.get_imdb (line 20)
  In cpn.train (line 17)
  In demo_test_tracker (line 26) 
Struct contents reference from a non-struct array object.

Error in cpn.io.get_imdb>prepare_imdb (line 53)
        tlist = gt.seg.info(gt.seg.info(:,3)==1,1);

Error in cpn.io.get_imdb (line 20)
    imdb = prepare_imdb(conf, root_cpn_data);

Error in cpn.train (line 17)
    imdb = cpn.io.get_imdb(conf_bb);

Error in demo_test_tracker (line 26)
    cpn.train(opts_cpn, conf_bb, conf_seg);

I'm widely unfamiliar with the code, so a hint on what is going wrong and how to fix it would be very much appreciated.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant