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<!DOCTYPE html>
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<title>RDM_system_connector documentation — RDM_system_connector documentation 0.1 documentation</title>
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<section id="rdm-system-connector-documentation">
<h1>RDM_system_connector documentation<a class="headerlink" href="#rdm-system-connector-documentation" title="Link to this heading"></a></h1>
</section>
<section id="project-synchronization-tool">
<h1>Project Synchronization Tool<a class="headerlink" href="#project-synchronization-tool" title="Link to this heading"></a></h1>
<a class="reference external image-reference" href="https://creativecommons.org/licenses/by/4.0/"><img alt="License: CC BY 4.0" src="https://img.shields.io/badge/License-CC%20BY%204.0-lightgrey.svg" />
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<p>This tool is designed to synchronize the entries in a four-tool system, which includes:</p>
<ul class="simple">
<li><p>A project registration system (eGroupware)</p></li>
<li><p>An electronic lab book (Rspace)</p></li>
<li><p>An image database (OMERO)</p></li>
<li><p>A long-term netstorage system (LINstore)</p></li>
</ul>
<p>The tool achieves this by running a daemon that continuously extracts the entries from these four tools and writes them into a database.</p>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="modules.html">RDM_system_connector</a><ul>
<li class="toctree-l2"><a class="reference internal" href="all_to_db.html">all_to_db module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.auto_insert_netstore_to_database"><code class="docutils literal notranslate"><span class="pre">auto_insert_netstore_to_database()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.auto_insert_omero_to_database"><code class="docutils literal notranslate"><span class="pre">auto_insert_omero_to_database()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.convert_omero_timestamp"><code class="docutils literal notranslate"><span class="pre">convert_omero_timestamp()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.convert_rspace_timestamp"><code class="docutils literal notranslate"><span class="pre">convert_rspace_timestamp()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.get_current_username"><code class="docutils literal notranslate"><span class="pre">get_current_username()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.get_file_stats"><code class="docutils literal notranslate"><span class="pre">get_file_stats()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.get_netstore_filelist"><code class="docutils literal notranslate"><span class="pre">get_netstore_filelist()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.get_rspace_workspace_folders"><code class="docutils literal notranslate"><span class="pre">get_rspace_workspace_folders()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.insert_egroupware"><code class="docutils literal notranslate"><span class="pre">insert_egroupware()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.insert_rspace_to_db"><code class="docutils literal notranslate"><span class="pre">insert_rspace_to_db()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.process_rspace_documents"><code class="docutils literal notranslate"><span class="pre">process_rspace_documents()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.process_rspace_folder"><code class="docutils literal notranslate"><span class="pre">process_rspace_folder()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="all_to_db.html#all_to_db.process_tags"><code class="docutils literal notranslate"><span class="pre">process_tags()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="db_to_all_synced.html">db_to_all_synced module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="db_to_all_synced.html#db_to_all_synced.create_links"><code class="docutils literal notranslate"><span class="pre">create_links()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="db_to_all_synced.html#db_to_all_synced.main"><code class="docutils literal notranslate"><span class="pre">main()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="db_to_all_synced.html#db_to_all_synced.sync_omero"><code class="docutils literal notranslate"><span class="pre">sync_omero()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="db_to_all_synced.html#db_to_all_synced.sync_rspace"><code class="docutils literal notranslate"><span class="pre">sync_rspace()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="folder_extract_mt.html">folder_extract_mt module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="folder_extract_mt.html#folder_extract_mt.list_files"><code class="docutils literal notranslate"><span class="pre">list_files()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="folder_extract_mt.html#folder_extract_mt.main"><code class="docutils literal notranslate"><span class="pre">main()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="folder_extract_mt.html#folder_extract_mt.write_files"><code class="docutils literal notranslate"><span class="pre">write_files()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="folder_extract_parallel.html">folder_extract_parallel module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="folder_extract_parallel.html#folder_extract_parallel.get_file_info"><code class="docutils literal notranslate"><span class="pre">get_file_info()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="folder_extract_parallel.html#folder_extract_parallel.main"><code class="docutils literal notranslate"><span class="pre">main()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="folder_extract_parallel.html#folder_extract_parallel.process_folder"><code class="docutils literal notranslate"><span class="pre">process_folder()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="folder_extract_parallel.html#folder_extract_parallel.save_to_database"><code class="docutils literal notranslate"><span class="pre">save_to_database()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="main.html">main module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="main.html#main.main"><code class="docutils literal notranslate"><span class="pre">main()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="ols_lookup.html">ols_lookup module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="ols_lookup.html#ols_lookup.calculate_overlap"><code class="docutils literal notranslate"><span class="pre">calculate_overlap()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="ols_lookup.html#ols_lookup.fetch_searchStr_info"><code class="docutils literal notranslate"><span class="pre">fetch_searchStr_info()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="ols_lookup.html#ols_lookup.find_best_match"><code class="docutils literal notranslate"><span class="pre">find_best_match()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="ols_lookup.html#ols_lookup.generate_substrings"><code class="docutils literal notranslate"><span class="pre">generate_substrings()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="ols_lookup.html#ols_lookup.get_matching_entries"><code class="docutils literal notranslate"><span class="pre">get_matching_entries()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="ols_lookup.html#ols_lookup.main"><code class="docutils literal notranslate"><span class="pre">main()</span></code></a></li>
<li class="toctree-l3"><a class="reference internal" href="ols_lookup.html#ols_lookup.read_json_file"><code class="docutils literal notranslate"><span class="pre">read_json_file()</span></code></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="src.html">src package</a><ul>
<li class="toctree-l3"><a class="reference internal" href="src.html#submodules">Submodules</a></li>
<li class="toctree-l3"><a class="reference internal" href="src.html#module-src.io_functions">src.io_functions module</a><ul>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.add_attachment_to_project"><code class="docutils literal notranslate"><span class="pre">add_attachment_to_project()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.auto_insert_fs_storage_to_database"><code class="docutils literal notranslate"><span class="pre">auto_insert_fs_storage_to_database()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.auto_insert_omero_to_database"><code class="docutils literal notranslate"><span class="pre">auto_insert_omero_to_database()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.calculate_binary_overlap"><code class="docutils literal notranslate"><span class="pre">calculate_binary_overlap()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.calculate_percentage"><code class="docutils literal notranslate"><span class="pre">calculate_percentage()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.check_db_table"><code class="docutils literal notranslate"><span class="pre">check_db_table()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.check_for_omero_entries"><code class="docutils literal notranslate"><span class="pre">check_for_omero_entries()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.check_if_entry_exists"><code class="docutils literal notranslate"><span class="pre">check_if_entry_exists()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.convert_abbreviation"><code class="docutils literal notranslate"><span class="pre">convert_abbreviation()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.convert_abbreviations"><code class="docutils literal notranslate"><span class="pre">convert_abbreviations()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.convert_omero_timestamp"><code class="docutils literal notranslate"><span class="pre">convert_omero_timestamp()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.convert_rspace_timestamp"><code class="docutils literal notranslate"><span class="pre">convert_rspace_timestamp()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.copy_author_from_projectcolumn"><code class="docutils literal notranslate"><span class="pre">copy_author_from_projectcolumn()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_bulk_import_file"><code class="docutils literal notranslate"><span class="pre">create_bulk_import_file()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_link"><code class="docutils literal notranslate"><span class="pre">create_link()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_object"><code class="docutils literal notranslate"><span class="pre">create_object()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_rspace_document"><code class="docutils literal notranslate"><span class="pre">create_rspace_document()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_rspace_document_header"><code class="docutils literal notranslate"><span class="pre">create_rspace_document_header()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_rspace_files_table"><code class="docutils literal notranslate"><span class="pre">create_rspace_files_table()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_rspace_folder"><code class="docutils literal notranslate"><span class="pre">create_rspace_folder()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_system_overlap"><code class="docutils literal notranslate"><span class="pre">create_system_overlap()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.create_tag"><code class="docutils literal notranslate"><span class="pre">create_tag()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.delete_duplicate_links"><code class="docutils literal notranslate"><span class="pre">delete_duplicate_links()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.delete_duplicate_objects"><code class="docutils literal notranslate"><span class="pre">delete_duplicate_objects()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.delete_duplicate_tags"><code class="docutils literal notranslate"><span class="pre">delete_duplicate_tags()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.delete_duplicates_bulk_import"><code class="docutils literal notranslate"><span class="pre">delete_duplicates_bulk_import()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.generate_html_table"><code class="docutils literal notranslate"><span class="pre">generate_html_table()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_abbreviation_dict"><code class="docutils literal notranslate"><span class="pre">get_abbreviation_dict()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_cleaned_tag_string"><code class="docutils literal notranslate"><span class="pre">get_cleaned_tag_string()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_col_overlap_df"><code class="docutils literal notranslate"><span class="pre">get_col_overlap_df()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_create_table_sql"><code class="docutils literal notranslate"><span class="pre">get_create_table_sql()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_current_username"><code class="docutils literal notranslate"><span class="pre">get_current_username()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_dataframe"><code class="docutils literal notranslate"><span class="pre">get_dataframe()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_dataset_fs_storage_name"><code class="docutils literal notranslate"><span class="pre">get_dataset_fs_storage_name()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_description_dict"><code class="docutils literal notranslate"><span class="pre">get_description_dict()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_df_if_exist"><code class="docutils literal notranslate"><span class="pre">get_df_if_exist()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_df_name"><code class="docutils literal notranslate"><span class="pre">get_df_name()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_egroupware_data"><code class="docutils literal notranslate"><span class="pre">get_egroupware_data()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_file_list"><code class="docutils literal notranslate"><span class="pre">get_file_list()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_file_stats"><code class="docutils literal notranslate"><span class="pre">get_file_stats()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_filelist_from_database"><code class="docutils literal notranslate"><span class="pre">get_filelist_from_database()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_int_from_date"><code class="docutils literal notranslate"><span class="pre">get_int_from_date()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_int_timestamp_from_iso"><code class="docutils literal notranslate"><span class="pre">get_int_timestamp_from_iso()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_iso_timestamp_from_int"><code class="docutils literal notranslate"><span class="pre">get_iso_timestamp_from_int()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_link_object_from_id"><code class="docutils literal notranslate"><span class="pre">get_link_object_from_id()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_netstore_data"><code class="docutils literal notranslate"><span class="pre">get_netstore_data()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_netstore_filelist"><code class="docutils literal notranslate"><span class="pre">get_netstore_filelist()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_object_by_id"><code class="docutils literal notranslate"><span class="pre">get_object_by_id()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_object_by_name"><code class="docutils literal notranslate"><span class="pre">get_object_by_name()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_object_id_from_netstore_name"><code class="docutils literal notranslate"><span class="pre">get_object_id_from_netstore_name()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_object_id_from_specific_id"><code class="docutils literal notranslate"><span class="pre">get_object_id_from_specific_id()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_placeholder_files_for_rspace"><code class="docutils literal notranslate"><span class="pre">get_placeholder_files_for_rspace()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_possible_tags_list"><code class="docutils literal notranslate"><span class="pre">get_possible_tags_list()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_project_timestamps_from_fs_storage"><code class="docutils literal notranslate"><span class="pre">get_project_timestamps_from_fs_storage()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_project_user_tuple"><code class="docutils literal notranslate"><span class="pre">get_project_user_tuple()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_remaining_path"><code class="docutils literal notranslate"><span class="pre">get_remaining_path()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_rspace_workspace_folders"><code class="docutils literal notranslate"><span class="pre">get_rspace_workspace_folders()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_sample_data_from_barcode"><code class="docutils literal notranslate"><span class="pre">get_sample_data_from_barcode()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_secret_api_parameters"><code class="docutils literal notranslate"><span class="pre">get_secret_api_parameters()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_stopwords"><code class="docutils literal notranslate"><span class="pre">get_stopwords()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_tag_description"><code class="docutils literal notranslate"><span class="pre">get_tag_description()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_tags_from_id"><code class="docutils literal notranslate"><span class="pre">get_tags_from_id()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.get_tags_tuple"><code class="docutils literal notranslate"><span class="pre">get_tags_tuple()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.insert_dict_to_database"><code class="docutils literal notranslate"><span class="pre">insert_dict_to_database()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.insert_egroupware"><code class="docutils literal notranslate"><span class="pre">insert_egroupware()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.is_string_in_list"><code class="docutils literal notranslate"><span class="pre">is_string_in_list()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.load_json_file"><code class="docutils literal notranslate"><span class="pre">load_json_file()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.omero_inplace_bulk_import"><code class="docutils literal notranslate"><span class="pre">omero_inplace_bulk_import()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.omero_inplace_import"><code class="docutils literal notranslate"><span class="pre">omero_inplace_import()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.process_rspace_documents"><code class="docutils literal notranslate"><span class="pre">process_rspace_documents()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.process_rspace_folder"><code class="docutils literal notranslate"><span class="pre">process_rspace_folder()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.process_tags"><code class="docutils literal notranslate"><span class="pre">process_tags()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.remove_stopwords"><code class="docutils literal notranslate"><span class="pre">remove_stopwords()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.save_df"><code class="docutils literal notranslate"><span class="pre">save_df()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.search_documents"><code class="docutils literal notranslate"><span class="pre">search_documents()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_functions.search_folder"><code class="docutils literal notranslate"><span class="pre">search_folder()</span></code></a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="src.html#module-src.io_metadata">src.io_metadata module</a><ul>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.extract_metadata"><code class="docutils literal notranslate"><span class="pre">extract_metadata()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.get_bf_metadata"><code class="docutils literal notranslate"><span class="pre">get_bf_metadata()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.get_init"><code class="docutils literal notranslate"><span class="pre">get_init()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.get_inputlist"><code class="docutils literal notranslate"><span class="pre">get_inputlist()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.is_tar_archive"><code class="docutils literal notranslate"><span class="pre">is_tar_archive()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.process_tar_gz"><code class="docutils literal notranslate"><span class="pre">process_tar_gz()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.save_metadata"><code class="docutils literal notranslate"><span class="pre">save_metadata()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.save_to_xml"><code class="docutils literal notranslate"><span class="pre">save_to_xml()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.io_metadata.search_string_in_file"><code class="docutils literal notranslate"><span class="pre">search_string_in_file()</span></code></a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="src.html#module-src.llm_response">src.llm_response module</a><ul>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.llm_response.get_base_prompt"><code class="docutils literal notranslate"><span class="pre">get_base_prompt()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="src.html#src.llm_response.get_mistral_response"><code class="docutils literal notranslate"><span class="pre">get_mistral_response()</span></code></a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="src.html#module-src">Module contents</a></li>
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