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Thanks for your interest. The function calc_npc() should never return 0. If you are able to send us your data, we could look into this for you; otherwise you could manually set data@nPC to a sensible value after inspecting the proportion of variation plot.
Hi, this package is really helpful! When I ran it on my data, I found the data@nPC is zero. Is it possible that the calc_npc() returns 0?
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