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Hi, if you found this page you are probably looking for some additional information on WISECONDOR.
The algorithm used is described in the paper which can be found here:
WISECONDOR: detection of fetal aberrations from shallow sequencing maternal plasma based on a within-sample comparison scheme
I'm currently in the process of updating WISECONDOR. Everything below is written for the legacy version, the new version has significant differences in implementation, inputs, outputs, and results in general. Please stand by.
If you are not very tech-savvy, I created an automated script to solve most complications: WISECONDOR on autopilot: run.sh. Be aware of its limitations: although it usually runs without issues, you have no control over the options and arguments available to tweak WISECONDOR to your likings.
Does WISECONDOR ... ?
Getting WISECONDOR to work
Understanding the input
Understanding the output
View results
To help people getting started, I created an Example Pipeline
I received word that an Ion Torrent plugin for WISECONDOR is now available. I have no such device myself so I cannot provide support but you can find the project here:
Ion-WISECONDOR
If you run into issues, please create a ticket so I can take care of it.
If you have other troubles running WISECONDOR or any related questions, feel free to contact me through the e-mail adress on my GitHub page.