File Pre-Processing and Post-Processing

[LimesKey]

File Pre-Processing and Post-Processing

In the program a user can upload a genome file of up to 5GB at max, the pre-processing removes unnecessary information that the program will not use. This information processing will come a step before @ImpossibleReality's FAB File Format and will be seamlessly incorporated into that. This will almost act as a log for the program, to simplify the inputted file and make the program quicker.

Pre-Processing

Pre-Processing will become before binary FAB conversion and will add information about gene metadata to the file including,

• Transcription Factor Binding Sites
• Start and Stop Codon Information
• Location & count of genes in a chromosome
• Removes FASTA Headers for interpretation & extraction
• Version of DNAnalyzer that processed the file
• Removing repetitive information such as lowercase characters

Processing

Processing will include performance measures to make the program run the file more efficiently.

• ASCII to Binary conversion
• Deflate Binary Compression

Post-Processing

May require database for completion. More to come as it becomes closer to completion...

• Grouping & Labeling genes that make up amino acids and proteins