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almlab / SmileTrain Public

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Scott Olesen edited this page May 12, 2014 · 8 revisions

Cloning

Editing user.cfg

Setting up your data

Toggle table of contents Pages 17

Home
Adding support for new clusters
Code & documentation standards
Common experience & wisdom
Common mistake & gotchas
Converting 3 file input to 2 file input
Example workflows
Getting started
How to contribute
How to get Greengenes taxonomies
How to process a filtered QIIME fasta
Pipeline basics
Pipeline overview
Preflight checks
Sequence tables
Translating output for oligotyping analysis
What is Smile Train?

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