create_yml.py

from utils.parse_yaml import cpac_yaml

import os
import click

@click.command()
@click.option('--pipeline1', required=True, type=str, help='Path to output directory from CPAC run '
              'to correlate against pipeline2')
@click.option('--pipeline2', required=True, type=str, help='Path to output directory from CPAC run '
              'to correlate against pipeline1')
@click.option('--workspace', type=str, help = 'directory to save correlations')
@click.option('--branch', type=str, help = 'branch name')
@click.option('--data_source', type=str, help = 'Data site')


def main(pipeline1, pipeline2, workspace, branch, data_source):
    """
    Correlate outputs from regression run again another C-PAC version.
    """

    git_home = os.path.normpath(os.path.dirname(os.path.abspath(__file__)) + os.sep + os.pardir)
    run_name = f'{branch}_{data_source}'

    cpac_yaml(pipeline1, pipeline2, f'{workspace}/correlations', run_name, 1, branch, data_source)

    return

if __name__ == "__main__":
    main()