From 9702b14a4624a07383fb965340590167b71bd89b Mon Sep 17 00:00:00 2001 From: FriederikeHanssen Date: Wed, 8 Jan 2025 09:28:02 +0000 Subject: [PATCH 1/3] back to dev and bump schema version --- CHANGELOG.md | 22 ++++++++++++++++++++++ assets/multiqc_config.yml | 2 +- nextflow.config | 4 ++-- 3 files changed, 25 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4e90ea7cac..548ca31e66 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,28 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## Dev + +### Added + +### Changed + +- [](https://github.com/nf-core/sarek/pull/) - Bump nf-schema version to 2.2.1 + +### Fixed + +### Removed + +### Dependencies + +| Dependency | Old version | New version | +| ---------- | ----------- | ----------- | + +### Parameters + +| Params | Status | +| ------ | ------ | + ## [3.5.0](https://github.com/nf-core/sarek/releases/tag/3.5.0) - Áhkájiegna A set of connecting glaciers. diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 4165fec686..a095dda137 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -3,7 +3,7 @@ custom_logo_url: https://github.com/nf-core/sarek/ custom_logo_title: "nf-core/sarek" report_comment: > - This report has been generated by the nf-core/sarek + This report has been generated by the nf-core/sarek analysis pipeline. For information about how to interpret these results, please see the documentation. report_section_order: diff --git a/nextflow.config b/nextflow.config index 1268aab63a..365a8e1832 100644 --- a/nextflow.config +++ b/nextflow.config @@ -381,13 +381,13 @@ manifest { description = """An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing""" mainScript = 'main.nf' nextflowVersion = '!>=24.04.2' - version = '3.5.0' + version = '3.6dev' doi = '10.12688/f1000research.16665.2, 10.1093/nargab/lqae031, 10.5281/zenodo.3476425' } // Nextflow plugins plugins { - id 'nf-schema@2.1.1' // Validation of pipeline parameters and creation of an input channel from a sample sheet + id 'nf-schema@2.2.1' // Validation of pipeline parameters and creation of an input channel from a sample sheet id 'nf-prov@1.2.2' // Provenance reports for pipeline runs } From ba7792156fd6d57c174f286c8a63ec9ffde79f6f Mon Sep 17 00:00:00 2001 From: Friederike Hanssen Date: Wed, 8 Jan 2025 10:29:04 +0100 Subject: [PATCH 2/3] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 548ca31e66..4f6606c990 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,7 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Changed -- [](https://github.com/nf-core/sarek/pull/) - Bump nf-schema version to 2.2.1 +- [1767](https://github.com/nf-core/sarek/pull/1767) - Bump nf-schema version to 2.2.1 ### Fixed From 2721da2a5aff8352105a365def2e69c8eff3f386 Mon Sep 17 00:00:00 2001 From: Friederike Hanssen Date: Wed, 8 Jan 2025 10:34:08 +0100 Subject: [PATCH 3/3] Update CHANGELOG.md --- CHANGELOG.md | 2 -- 1 file changed, 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4ed81840b6..6f3161eb42 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,8 +15,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [1767](https://github.com/nf-core/sarek/pull/1767) - Bump nf-schema version to 2.2.1 -### Changed - ### Fixed ### Removed