Can't access the data

[mildamarij]

I can not access the data from: https://www.pmgenomics.ca/bhklab/sites/default/files/downloads/

#

library(CoreGx)
library(PharmacoGx)
# Both commands do not work
availablePSets()
downloadPertSig("CMAP")

# `> sessionInfo()
R version 4.1.3 (2022-03-10)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: macOS 13.3

Matrix products: default
LAPACK: /Users/milda/miniforge3/envs/sesame/lib/liblapack-netlib.3.9.0.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base

other attached packages:
[1] PharmacoGx_2.6.0 CoreGx_1.6.0 SummarizedExperiment_1.24.0 Biobase_2.54.0
[5] GenomicRanges_1.46.1 GenomeInfoDb_1.30.1 IRanges_2.28.0 S4Vectors_0.32.4
[9] MatrixGenerics_1.6.0 matrixStats_1.0.0 BiocGenerics_0.40.0

loaded via a namespace (and not attached):
[1] lsa_0.73.3 bitops_1.0-7 RColorBrewer_1.1-3 BumpyMatrix_1.2.0
[5] SnowballC_0.7.1 tools_4.1.3 backports_1.4.1 utf8_1.2.3
[9] R6_2.5.1 DT_0.28 sm_2.2-5.7.1 KernSmooth_2.23-21
[13] colorspace_2.1-0 tidyselect_1.2.0 gridExtra_2.3 compiler_4.1.3
[17] cli_3.6.1 pacman_0.5.1 shinyjs_2.1.0 DelayedArray_0.20.0
[21] slam_0.1-50 caTools_1.18.2 scales_1.2.1 checkmate_2.2.0
[25] relations_0.6-13 stringr_1.5.0 digest_0.6.31 XVector_0.34.0
[29] pkgconfig_2.0.3 htmltools_0.5.5 plotrix_3.8-2 fastmap_1.1.1
[33] limma_3.50.3 maps_3.4.1 htmlwidgets_1.6.2 rlang_1.1.1
[37] rstudioapi_0.14 shiny_1.7.4 visNetwork_2.1.2 generics_0.1.3
[41] jsonlite_1.8.5 BiocParallel_1.28.3 gtools_3.9.4 dplyr_1.1.2
[45] RCurl_1.98-1.12 magrittr_2.0.3 GenomeInfoDbData_1.2.7 Matrix_1.5-4.1
[49] Rcpp_1.0.10 celestial_1.4.6 munsell_0.5.0 fansi_1.0.4
[53] lifecycle_1.0.3 stringi_1.7.12 piano_2.10.0 MASS_7.3-58.3
[57] zlibbioc_1.40.0 plyr_1.8.8 gplots_3.1.3 grid_4.1.3
[61] parallel_4.1.3 promises_1.2.0.1 shinydashboard_0.7.2 crayon_1.5.2
[65] lattice_0.21-8 mapproj_1.2.11 pillar_1.9.0 fgsea_1.20.0
[69] igraph_1.4.3 reshape2_1.4.4 marray_1.72.0 fastmatch_1.1-3
[73] NISTunits_1.0.1 glue_1.6.2 downloader_0.4 data.table_1.14.8
[77] MultiAssayExperiment_1.20.0 vctrs_0.6.2 httpuv_1.6.11 gtable_0.3.3
[81] RANN_2.6.1 ggplot2_3.4.2 mime_0.12 xtable_1.8-4
[85] pracma_2.4.2 later_1.3.1 tibble_3.2.1 sets_1.0-24
[89] cluster_2.1.4 ellipsis_0.3.2 magicaxis_2.2.14 `

[jjacobson95]

I'm running into the same issue - the R package is not able to retrieve the current datasets. Any update on when this data might be made available again?