From 230933182f452531939d239dd2fbe158740e2852 Mon Sep 17 00:00:00 2001
From: Nalika Palayoor <palayoor.n@northeastern.edu>
Date: Tue, 21 Jan 2025 14:47:38 -0500
Subject: [PATCH 1/2] Added dome as prefix. Updated json and tsv files

---
 src/bioregistry/data/bioregistry.json   | 29 +++++++++++++++++++++++++
 src/bioregistry/data/curated_papers.tsv |  1 +
 2 files changed, 30 insertions(+)

diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json
index a558cbae7..73b9e14dd 100644
--- a/src/bioregistry/data/bioregistry.json
+++ b/src/bioregistry/data/bioregistry.json
@@ -28681,6 +28681,35 @@
     },
     "name": "Descriptive Ontology for Linguistic and Cognitive Engineering"
   },
+  "dome": {
+    "contact": {
+      "email": "silvio.tosatto@unipd.it",
+      "name": "Silvio Tosatto",
+      "orcid": "0000-0003-4525-7793"
+    },
+    "contributor": {
+      "email": "palayoor.n@northeastern.edu",
+      "github": "nalikapalayoor",
+      "name": "Nalika Palayoor",
+      "orcid": "0009-0008-8406-631X"
+    },
+    "description": "The DOME registry is a curated set of papers related to machine learning methods in biology, each with its own unique DOME identifier.",
+    "example": "dfyn1yvtz3",
+    "github_request_issue": 1375,
+    "homepage": "https://registry.dome-ml.org/intro",
+    "name": "DOME Registry",
+    "pattern": "^[a-z0-9]{10}$",
+    "publications": [
+      {
+        "doi": "10.1093/gigascience/giae094",
+        "pmc": "PMC11633452",
+        "pubmed": "39661723",
+        "title": "DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology",
+        "year": 2024
+      }
+    ],
+    "uri_format": "https://registry.dome-ml.org/review/$1"
+  },
   "dommino": {
     "biocontext": {
       "prefix": "DOMMINO"
diff --git a/src/bioregistry/data/curated_papers.tsv b/src/bioregistry/data/curated_papers.tsv
index af86222eb..db69c41d1 100644
--- a/src/bioregistry/data/curated_papers.tsv
+++ b/src/bioregistry/data/curated_papers.tsv
@@ -134,6 +134,7 @@ pubmed	relevant	orcid	date_curated	relevancy_type	pr_added	notes
 39659497	0	0009-0008-8406-631X	2025-01-07	irrelevant_other	1351	
 39660292	0	0009-0008-8406-631X	2025-01-07	irrelevant_other	1351	
 39660842	0	0009-0008-8406-631X	2025-01-17	not_identifiers_resource	1364	
+39661723	1	0009-0008-8406-631X	2025-01-21	new_prefix	1375	
 39670819	0	0009-0008-8406-631X	2025-01-10	irrelevant_other	1351	
 39672676	0	0009-0008-8406-631X	2025-01-14	irrelevant_other	1364	
 39684768	0	0009-0008-8406-631X	2025-01-14	irrelevant_other	1364	

From 27b1605395c91f1c9848c150d09d7c2c30eaaa7d Mon Sep 17 00:00:00 2001
From: Nalika Palayoor <palayoor.n@northeastern.edu>
Date: Tue, 21 Jan 2025 14:50:51 -0500
Subject: [PATCH 2/2] Updated PR # for tsv and json files

---
 src/bioregistry/data/bioregistry.json   | 2 +-
 src/bioregistry/data/curated_papers.tsv | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json
index 73b9e14dd..d8af0ac97 100644
--- a/src/bioregistry/data/bioregistry.json
+++ b/src/bioregistry/data/bioregistry.json
@@ -28695,7 +28695,7 @@
     },
     "description": "The DOME registry is a curated set of papers related to machine learning methods in biology, each with its own unique DOME identifier.",
     "example": "dfyn1yvtz3",
-    "github_request_issue": 1375,
+    "github_request_issue": 1374,
     "homepage": "https://registry.dome-ml.org/intro",
     "name": "DOME Registry",
     "pattern": "^[a-z0-9]{10}$",
diff --git a/src/bioregistry/data/curated_papers.tsv b/src/bioregistry/data/curated_papers.tsv
index db69c41d1..8cd0ab65e 100644
--- a/src/bioregistry/data/curated_papers.tsv
+++ b/src/bioregistry/data/curated_papers.tsv
@@ -134,7 +134,7 @@ pubmed	relevant	orcid	date_curated	relevancy_type	pr_added	notes
 39659497	0	0009-0008-8406-631X	2025-01-07	irrelevant_other	1351	
 39660292	0	0009-0008-8406-631X	2025-01-07	irrelevant_other	1351	
 39660842	0	0009-0008-8406-631X	2025-01-17	not_identifiers_resource	1364	
-39661723	1	0009-0008-8406-631X	2025-01-21	new_prefix	1375	
+39661723	1	0009-0008-8406-631X	2025-01-21	new_prefix	1374	
 39670819	0	0009-0008-8406-631X	2025-01-10	irrelevant_other	1351	
 39672676	0	0009-0008-8406-631X	2025-01-14	irrelevant_other	1364	
 39684768	0	0009-0008-8406-631X	2025-01-14	irrelevant_other	1364