diff --git a/docs/_static/basic.css b/docs/_static/basic.css index 10301e1..18d05ab 100644 --- a/docs/_static/basic.css +++ b/docs/_static/basic.css @@ -731,8 +731,9 @@ dl.glossary dt { .classifier:before { font-style: normal; - margin: 0.5em; + margin: 0 0.5em; content: ":"; + display: inline-block; } abbr, acronym { diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js index f84e010..fba5013 100644 --- a/docs/_static/documentation_options.js +++ b/docs/_static/documentation_options.js @@ -1,6 +1,6 @@ var DOCUMENTATION_OPTIONS = { URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '0.1.20', + VERSION: '0.1.21', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/docs/_static/searchtools.js b/docs/_static/searchtools.js index 58ff35c..002e9c4 100644 --- a/docs/_static/searchtools.js +++ b/docs/_static/searchtools.js @@ -328,7 +328,9 @@ var Search = { var results = []; for (var prefix in objects) { - for (var name in objects[prefix]) { + for (var iMatch = 0; iMatch != objects[prefix].length; ++iMatch) { + var match = objects[prefix][iMatch]; + var name = match[4]; var fullname = (prefix ? prefix + '.' : '') + name; var fullnameLower = fullname.toLowerCase() if (fullnameLower.indexOf(object) > -1) { @@ -342,7 +344,6 @@ var Search = { } else if (parts[parts.length - 1].indexOf(object) > -1) { score += Scorer.objPartialMatch; } - var match = objects[prefix][name]; var objname = objnames[match[1]][2]; var title = titles[match[0]]; // If more than one term searched for, we require other words to be diff --git a/docs/about.html b/docs/about.html index a5dd958..4700f19 100644 --- a/docs/about.html +++ b/docs/about.html @@ -6,7 +6,7 @@ - About BioSimulators-COBRApy — BioSimulators-COBRApy 0.1.20 documentation + About BioSimulators-COBRApy — BioSimulators-COBRApy 0.1.21 documentation diff --git a/docs/genindex.html b/docs/genindex.html index 1d10e14..f3b2865 100644 --- a/docs/genindex.html +++ b/docs/genindex.html @@ -5,7 +5,7 @@ - Index — BioSimulators-COBRApy 0.1.20 documentation + Index — BioSimulators-COBRApy 0.1.21 documentation diff --git a/docs/index.html b/docs/index.html index 3318e8a..391d77d 100644 --- a/docs/index.html +++ b/docs/index.html @@ -6,7 +6,7 @@ - BioSimulators-COBRApy documentation — BioSimulators-COBRApy 0.1.20 documentation + BioSimulators-COBRApy documentation — BioSimulators-COBRApy 0.1.21 documentation diff --git a/docs/installation.html b/docs/installation.html index 3f58910..da6a8b4 100644 --- a/docs/installation.html +++ b/docs/installation.html @@ -6,7 +6,7 @@ - Installation instructions — BioSimulators-COBRApy 0.1.20 documentation + Installation instructions — BioSimulators-COBRApy 0.1.21 documentation diff --git a/docs/py-modindex.html b/docs/py-modindex.html index 50e48fe..6011789 100644 --- a/docs/py-modindex.html +++ b/docs/py-modindex.html @@ -5,7 +5,7 @@ - Python Module Index — BioSimulators-COBRApy 0.1.20 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Submodules
-class biosimulators_cobrapy.data_model.Solver(value)[source]
+class biosimulators_cobrapy.data_model.Solver(value)[source]

Bases: str, enum.Enum

-cplex = 'cplex'[source]
+cplex = 'cplex'[source]
-glpk = 'glpk'[source]
+glpk = 'glpk'[source]
-gurobi = 'gurobi'[source]
+gurobi = 'gurobi'[source]
diff --git a/docs/tutorial.html b/docs/tutorial.html index 75a62d8..84c0b0e 100644 --- a/docs/tutorial.html +++ b/docs/tutorial.html @@ -6,7 +6,7 @@ - Tutorial — BioSimulators-COBRApy 0.1.20 documentation + Tutorial — BioSimulators-COBRApy 0.1.21 documentation @@ -197,7 +197,7 @@

Tutorial

Creating COMBINE/OMEX archives and encoding simulation experiments into SED-ML

-

Information about how to create COMBINE/OMEX archives which can be executed by BioSimulators-COBRApy is available at BioSimulators.

+

Information about how to create COMBINE/OMEX archives which can be executed by BioSimulators-COBRApy is available here.

A list of the algorithms and algorithm parameters supported by COBRApy is available at BioSimulators.

SED-ML targets for simulation predictions

@@ -218,7 +218,7 @@

SED-ML targets for simulation predictionshttps://biosimulators.org/conventions/simulation-experiments for more information.

+

Please see https://docs.biosimulations.org for more information.