From 3664415a3eb63d3ff23a634ce8a0bb0133612b2b Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Wed, 18 Dec 2024 13:23:11 +0100 Subject: [PATCH 01/62] Draft code for read_sdmx. Signed-off-by: javier.hernandez --- src/pysdmx/io/__init__.py | 79 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 79 insertions(+) diff --git a/src/pysdmx/io/__init__.py b/src/pysdmx/io/__init__.py index 02b09334..e96742a3 100644 --- a/src/pysdmx/io/__init__.py +++ b/src/pysdmx/io/__init__.py @@ -1 +1,80 @@ """IO module for SDMX data.""" + +from enum import Enum +from io import BytesIO +from pathlib import Path +from typing import Union, Dict, Any + +from pysdmx.errors import Invalid +from pysdmx.io.input_processor import process_string_to_read +from pysdmx.model.dataset import Dataset + + +class ReadFormat(Enum): + """Enumeration of supported SDMX read formats.""" + + SDMX_ML_2_1 = "SDMX-ML 2.1" + # SDMX_JSON_2 = "SDMX-JSON 2.0.0" + # FUSION_JSON = "FusionJSON" + SDMX_CSV_1_0 = "SDMX-CSV 1.0" + SDMX_CSV_2_0 = "SDMX-CSV 2.0" + + def check_extension(self, extension: str) -> bool: + if self == ReadFormat.SDMX_ML_2_1 and extension == "xml": + return True + # if self == ReadFormat.SDMX_JSON_2 and extension == "json": + # return True + # if self == ReadFormat.FUSION_JSON and extension == "json": + # return True + if self == ReadFormat.SDMX_CSV_1_0 and extension == "csv": + return True + if self == ReadFormat.SDMX_CSV_2_0 and extension == "csv": + return True + return False + + def __str__(self): + return self.value + + +def read_sdmx( + infile: Union[str, Path, BytesIO], format: ReadFormat +) -> Dict[str, Any]: + """ + Reads any sdmx file and returns a dictionary. + + Supported metadata formats are: + - SDMX-ML 2.1 + + Supported data formats are: + - SDMX-ML 2.1 + - SDMX-CSV 1.0 + - SDMX-CSV 2.0 + + Args: + infile: Path to file (pathlib.Path), URL, or string. + + Returns: + A dictionary containing the parsed SDMX data or metadata. + """ + + input_str, ext = process_string_to_read(infile) + if not format.check_extension(ext): + raise Invalid(f"Invalid format {format} for extension {ext}.") + + elif format == ReadFormat.SDMX_ML_2_1: + from pysdmx.io.xml.sdmx21.reader import read_xml + result = read_xml(input_str, validate=True) + elif format == ReadFormat.SDMX_CSV_1_0: + from pysdmx.io.csv.sdmx10.reader import read + result = read(input_str) + elif format == ReadFormat.SDMX_CSV_2_0: + from pysdmx.io.csv.sdmx20.reader import read + result = read(input_str) + else: + raise Invalid("Invalid format", f"Format {format} is not supported.") + + # Additional processing for all formats will be placed here + + # TODO: Add message class? + + return result \ No newline at end of file From 2d87af70924cde158c95e1d304be99ca879d122e Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 11:02:34 +0100 Subject: [PATCH 02/62] Refactored code on Message class to move submission and ActionType to their classes. Added read_sdmx method to reader Signed-off-by: javier.hernandez --- src/pysdmx/io/__init__.py | 79 +--------- src/pysdmx/io/csv/sdmx20/__init__.py | 2 +- src/pysdmx/io/csv/sdmx20/reader/__init__.py | 2 +- src/pysdmx/io/reader.py | 112 ++++++++++++++ .../io/xml/sdmx21/reader/metadata_read.py | 2 +- .../io/xml/sdmx21/reader/submission_reader.py | 2 +- src/pysdmx/model/dataset.py | 14 +- src/pysdmx/model/message.py | 141 ++++++++++-------- src/pysdmx/model/submission.py | 18 +++ tests/io/csv/sdmx20/writer/test_writer_v2.py | 2 +- tests/io/xml/sdmx21/reader/test_reader.py | 2 +- tests/model/test_message.py | 45 +++--- tests/model/test_submission.py | 2 +- 13 files changed, 257 insertions(+), 166 deletions(-) create mode 100644 src/pysdmx/io/reader.py create mode 100644 src/pysdmx/model/submission.py diff --git a/src/pysdmx/io/__init__.py b/src/pysdmx/io/__init__.py index e96742a3..1e0c37ab 100644 --- a/src/pysdmx/io/__init__.py +++ b/src/pysdmx/io/__init__.py @@ -1,80 +1,5 @@ """IO module for SDMX data.""" -from enum import Enum -from io import BytesIO -from pathlib import Path -from typing import Union, Dict, Any +from pysdmx.io.reader import read_sdmx -from pysdmx.errors import Invalid -from pysdmx.io.input_processor import process_string_to_read -from pysdmx.model.dataset import Dataset - - -class ReadFormat(Enum): - """Enumeration of supported SDMX read formats.""" - - SDMX_ML_2_1 = "SDMX-ML 2.1" - # SDMX_JSON_2 = "SDMX-JSON 2.0.0" - # FUSION_JSON = "FusionJSON" - SDMX_CSV_1_0 = "SDMX-CSV 1.0" - SDMX_CSV_2_0 = "SDMX-CSV 2.0" - - def check_extension(self, extension: str) -> bool: - if self == ReadFormat.SDMX_ML_2_1 and extension == "xml": - return True - # if self == ReadFormat.SDMX_JSON_2 and extension == "json": - # return True - # if self == ReadFormat.FUSION_JSON and extension == "json": - # return True - if self == ReadFormat.SDMX_CSV_1_0 and extension == "csv": - return True - if self == ReadFormat.SDMX_CSV_2_0 and extension == "csv": - return True - return False - - def __str__(self): - return self.value - - -def read_sdmx( - infile: Union[str, Path, BytesIO], format: ReadFormat -) -> Dict[str, Any]: - """ - Reads any sdmx file and returns a dictionary. - - Supported metadata formats are: - - SDMX-ML 2.1 - - Supported data formats are: - - SDMX-ML 2.1 - - SDMX-CSV 1.0 - - SDMX-CSV 2.0 - - Args: - infile: Path to file (pathlib.Path), URL, or string. - - Returns: - A dictionary containing the parsed SDMX data or metadata. - """ - - input_str, ext = process_string_to_read(infile) - if not format.check_extension(ext): - raise Invalid(f"Invalid format {format} for extension {ext}.") - - elif format == ReadFormat.SDMX_ML_2_1: - from pysdmx.io.xml.sdmx21.reader import read_xml - result = read_xml(input_str, validate=True) - elif format == ReadFormat.SDMX_CSV_1_0: - from pysdmx.io.csv.sdmx10.reader import read - result = read(input_str) - elif format == ReadFormat.SDMX_CSV_2_0: - from pysdmx.io.csv.sdmx20.reader import read - result = read(input_str) - else: - raise Invalid("Invalid format", f"Format {format} is not supported.") - - # Additional processing for all formats will be placed here - - # TODO: Add message class? - - return result \ No newline at end of file +__all__ = ["read_sdmx"] diff --git a/src/pysdmx/io/csv/sdmx20/__init__.py b/src/pysdmx/io/csv/sdmx20/__init__.py index b01bc408..52e73e2f 100644 --- a/src/pysdmx/io/csv/sdmx20/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/__init__.py @@ -1,6 +1,6 @@ """SDMX 2.0 CSV reader and writer.""" -from pysdmx.model.message import ActionType +from pysdmx.model.dataset import ActionType SDMX_CSV_ACTION_MAPPER = { ActionType.Append: "A", diff --git a/src/pysdmx/io/csv/sdmx20/reader/__init__.py b/src/pysdmx/io/csv/sdmx20/reader/__init__.py index 4f4839d1..01f183e7 100644 --- a/src/pysdmx/io/csv/sdmx20/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/reader/__init__.py @@ -7,7 +7,7 @@ from pysdmx.errors import Invalid from pysdmx.io.pd import PandasDataset -from pysdmx.model.message import ActionType +from pysdmx.model.dataset import ActionType ACTION_SDMX_CSV_MAPPER_READING = { "A": ActionType.Append, diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py new file mode 100644 index 00000000..1dfadf23 --- /dev/null +++ b/src/pysdmx/io/reader.py @@ -0,0 +1,112 @@ +from enum import Enum +from io import BytesIO +from pathlib import Path +from typing import Union, Any + +from pysdmx.errors import Invalid +from pysdmx.io.input_processor import process_string_to_read +from pysdmx.model.dataset import Dataset +from pysdmx.model.message import Message + + +class ReadFormat(Enum): + """Enumeration of supported SDMX read formats.""" + + SDMX_ML_2_1 = "SDMX-ML 2.1" + # SDMX_JSON_2 = "SDMX-JSON 2.0.0" + # FUSION_JSON = "FusionJSON" + SDMX_CSV_1_0 = "SDMX-CSV 1.0" + SDMX_CSV_2_0 = "SDMX-CSV 2.0" + + def check_extension(self, extension: str) -> bool: + """ + Check if the extension is valid for the format. + + Args: + extension: The file extension. + + Returns: + bool: True if the extension is valid, False otherwise + """ + if self == ReadFormat.SDMX_ML_2_1 and extension == "xml": + return True + # if self == ReadFormat.SDMX_JSON_2 and extension == "json": + # return True + # if self == ReadFormat.FUSION_JSON and extension == "json": + # return True + if self == ReadFormat.SDMX_CSV_1_0 and extension == "csv": + return True + if self == ReadFormat.SDMX_CSV_2_0 and extension == "csv": + return True + return False + + def __str__(self): + return self.value + + +def read_sdmx( + infile: Union[str, Path, BytesIO], + format: ReadFormat, + validate: bool = True, + use_dataset_id: bool = False, +) -> Message: + """ + Reads any sdmx file and returns a dictionary. + + Supported metadata formats are: + - SDMX-ML 2.1 + + Supported data formats are: + - SDMX-ML 2.1 + - SDMX-CSV 1.0 + - SDMX-CSV 2.0 + + Args: + infile: Path to file (pathlib.Path), URL, or string. + format: Enumerated format of the SDMX file. + use_dataset_id: Whether to use the dataset ID as + the key in the resulting dictionary (only for SDMX-ML). + validate: Validate the input file (only for SDMX-ML). + + Returns: + A dictionary containing the parsed SDMX data or metadata. + + Raises: + Invalid: If the file is empty or the format is not supported. + """ + + input_str, ext = process_string_to_read(infile) + if not format.check_extension(ext): + raise Invalid(f"Invalid format {format} for extension {ext}.") + + elif format == ReadFormat.SDMX_ML_2_1: + from pysdmx.io.xml.sdmx21.reader import read_xml + + result = read_xml( + input_str, validate=validate, use_dataset_id=use_dataset_id + ) + elif format == ReadFormat.SDMX_CSV_1_0: + from pysdmx.io.csv.sdmx10.reader import read + + result = read(input_str) + elif format == ReadFormat.SDMX_CSV_2_0: + from pysdmx.io.csv.sdmx20.reader import read + + result = read(input_str) + else: + raise Invalid("Invalid format", f"Format {format} is not supported.") + + if len(result) == 0: + raise Invalid("Empty SDMX Message") + + # Additional processing for all formats will be placed here + + # TODO: Add here the Schema download for Datasets, based on structure + + if format in (ReadFormat.SDMX_CSV_1_0, ReadFormat.SDMX_CSV_2_0): + return Message(data=result) + + first_value = next(iter(result.values())) + if isinstance(first_value, Dataset): + return Message(data=result) + return Message(structures=result) diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py index 96cce74e..dd2957c8 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py @@ -116,7 +116,7 @@ DataStructureDefinition, Role, ) -from pysdmx.model.message import CONCEPTS, ORGS +from pysdmx.io.xml.sdmx21.__parsing_config import CONCEPTS, ORGS from pysdmx.model.vtl import Transformation, TransformationScheme from pysdmx.util import find_by_urn, parse_urn diff --git a/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py b/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py index 1b2e422d..77b0b34a 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py +++ b/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py @@ -13,7 +13,7 @@ SUBMITTED_STRUCTURE, URN, ) -from pysdmx.model.message import SubmissionResult +from pysdmx.model.submission import SubmissionResult from pysdmx.util import parse_urn diff --git a/src/pysdmx/model/dataset.py b/src/pysdmx/model/dataset.py index 9196033f..d4ce2e1b 100644 --- a/src/pysdmx/model/dataset.py +++ b/src/pysdmx/model/dataset.py @@ -1,12 +1,24 @@ """Dataset module.""" from datetime import date, datetime +from enum import Enum from typing import Any, Dict, Optional, Union from msgspec import Struct from pysdmx.model import Schema -from pysdmx.model.message import ActionType + + +class ActionType(Enum): + """ActionType enumeration. + + Enumeration that withholds the Action type for writing purposes. + """ + + Append = "append" + Replace = "replace" + Delete = "delete" + Information = "information" class SeriesInfo(Struct, frozen=True): diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 29b79f76..7d7638fa 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -12,28 +12,19 @@ SubmissionResult: Class that represents the result of a submission. """ -from datetime import datetime, timezone -from enum import Enum -from typing import Any, Dict, Optional import uuid +from datetime import datetime, timezone +from typing import Any, Dict, Optional, Union from msgspec import Struct from pysdmx.errors import Invalid, NotFound +from pysdmx.io.xml.sdmx21.__parsing_config import DSDS +from pysdmx.io.xml.sdmx21.reader.__utils import DFWS from pysdmx.model import Codelist, ConceptScheme from pysdmx.model.__base import ItemScheme - - -class ActionType(Enum): - """ActionType enumeration. - - Enumeration that withholds the Action type for writing purposes. - """ - - Append = "append" - Replace = "replace" - Delete = "delete" - Information = "information" +from pysdmx.model.dataflow import DataStructureDefinition, Dataflow +from pysdmx.model.dataset import Dataset, ActionType class Header(Struct, kw_only=True): @@ -57,6 +48,8 @@ class Header(Struct, kw_only=True): ORGS: ItemScheme, CLS: Codelist, CONCEPTS: ConceptScheme, + DSDS: DataStructureDefinition, + DFWS: Dataflow, } @@ -64,94 +57,122 @@ class Message(Struct, frozen=True): """Message class holds the content of SDMX Message. Attributes: - content (Dict[str, Any]): Content of the message. The keys are the + structures (dict): Content of the Structure Message. The keys are the content type (e.g. ``OrganisationSchemes``, ``Codelists``, etc.), and the values are the content objects (e.g. ``ItemScheme``, ``Codelist``, etc.). """ - content: Dict[str, Any] + structures: Optional[ + Dict[ + str, + Dict[ + str, + Union[ + ItemScheme, + Codelist, + ConceptScheme, + DataStructureDefinition, + Dataflow, + ], + ], + ] + ] = None + data: Optional[Dict[str, Dataset]] = None def __post_init__(self) -> None: """Checks if the content is valid.""" - for content_key, content_value in self.content.items(): - if content_key not in MSG_CONTENT_PKG: - raise Invalid( - f"Invalid content type: {content_key}", - "Check the docs for the proper structure on content.", - ) - - for obj_ in content_value.values(): - if not isinstance(obj_, MSG_CONTENT_PKG[content_key]): + if self.structures is not None: + for content_key, content_value in self.structures.items(): + if content_key not in MSG_CONTENT_PKG: raise Invalid( - f"Invalid content value type: {type(obj_).__name__} " - f"for {content_key}", + f"Invalid content type: {content_key}", "Check the docs for the proper " - "structure on content.", + "structure on structures.", + ) + + for obj_ in content_value.values(): + if not isinstance(obj_, MSG_CONTENT_PKG[content_key]): + raise Invalid( + f"Invalid content value type: {type(obj_).__name__} " + f"for {content_key}", + "Check the docs for the proper " + "structure on structures.", + ) + if self.data is not None: + for data_key, data_value in self.data.items(): + if not isinstance(data_value, Dataset): + raise Invalid( + f"Invalid data value type: {type(data_value).__name__} " + f"for {data_key}", + "Check the docs for the proper structure on data.", ) def __get_elements(self, type_: str) -> Dict[str, Any]: """Returns the elements from content.""" - if type_ in self.content: - return self.content[type_] + if type_ in self.structures: + return self.structures[type_] raise NotFound( f"No {type_} found in content", f"Could not find any {type_} in content.", ) - def __get_element_by_uid(self, type_: str, unique_id: str) -> Any: + def __get_single_element(self, type_: str, short_urn: str) -> Any: """Returns a specific element from content.""" - if type_ not in self.content: + if type_ not in self.structures: raise NotFound( f"No {type_} found.", f"Could not find any {type_} in content.", ) - if unique_id in self.content[type_]: - return self.content[type_][unique_id] + if short_urn in self.structures[type_]: + return self.structures[type_][short_urn] raise NotFound( - f"No {type_} with id {unique_id} found in content", + f"No {type_} with Short URN {short_urn} found in content", "Could not find the requested element.", ) def get_organisation_schemes(self) -> Dict[str, ItemScheme]: - """Returns the OrganisationScheme.""" + """Returns the OrganisationSchemes.""" return self.__get_elements(ORGS) def get_codelists(self) -> Dict[str, Codelist]: - """Returns the Codelist.""" + """Returns the Codelists.""" return self.__get_elements(CLS) def get_concept_schemes(self) -> Dict[str, ConceptScheme]: - """Returns the Concept.""" + """Returns the Concept Schemes.""" return self.__get_elements(CONCEPTS) - def get_organisation_scheme_by_uid(self, unique_id: str) -> ItemScheme: + def get_data_structure_definitions( + self, + ) -> Dict[str, DataStructureDefinition]: + """Returns the DataStructureDefinitions.""" + return self.__get_elements(DSDS) + + def get_dataflows(self) -> Dict[str, Dataflow]: + """Returns the Dataflows.""" + return self.__get_elements(DFWS) + + def get_organisation_scheme(self, short_urn: str) -> ItemScheme: """Returns a specific OrganisationScheme.""" - return self.__get_element_by_uid(ORGS, unique_id) + return self.__get_single_element(ORGS, short_urn) - def get_codelist_by_uid(self, unique_id: str) -> Codelist: + def get_codelist(self, short_urn: str) -> Codelist: """Returns a specific Codelist.""" - return self.__get_element_by_uid(CLS, unique_id) + return self.__get_single_element(CLS, short_urn) - def get_concept_scheme_by_uid(self, unique_id: str) -> ConceptScheme: + def get_concept_scheme(self, short_urn: str) -> ConceptScheme: """Returns a specific Concept.""" - return self.__get_element_by_uid(CONCEPTS, unique_id) + return self.__get_single_element(CONCEPTS, short_urn) + def get_data_structure_definition( + self, short_urn: str + ) -> DataStructureDefinition: + """Returns a specific DataStructureDefinition.""" + return self.__get_single_element(DSDS, short_urn) -class SubmissionResult(Struct, frozen=True): - """A class to represent a Submission Result.""" - - action: str - short_urn: str - status: str - - def __str__(self) -> str: - """Return a string representation of the SubmissionResult.""" - return ( - f"" - ) + def get_dataflow(self, short_urn: str) -> Dataflow: + """Returns a specific Dataflow.""" + return self.__get_single_element(DFWS, short_urn) diff --git a/src/pysdmx/model/submission.py b/src/pysdmx/model/submission.py new file mode 100644 index 00000000..7e5c6743 --- /dev/null +++ b/src/pysdmx/model/submission.py @@ -0,0 +1,18 @@ +from msgspec import Struct + + +class SubmissionResult(Struct, frozen=True): + """A class to represent a Submission Result.""" + + action: str + short_urn: str + status: str + + def __str__(self) -> str: + """Return a string representation of the SubmissionResult.""" + return ( + f"" + ) diff --git a/tests/io/csv/sdmx20/writer/test_writer_v2.py b/tests/io/csv/sdmx20/writer/test_writer_v2.py index 5e7d246e..313aa970 100644 --- a/tests/io/csv/sdmx20/writer/test_writer_v2.py +++ b/tests/io/csv/sdmx20/writer/test_writer_v2.py @@ -6,7 +6,7 @@ from pysdmx.io.csv.sdmx20.writer import writer from pysdmx.io.pd import PandasDataset -from pysdmx.model.message import ActionType +from pysdmx.model.dataset import ActionType @pytest.fixture() diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index 9eb112bc..79d8e999 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -10,7 +10,7 @@ from pysdmx.io.xml.sdmx21.reader import read_xml from pysdmx.io.xml.sdmx21.writer import writer as write_xml from pysdmx.model import Contact -from pysdmx.model.message import SubmissionResult +from pysdmx.model.submission import SubmissionResult from pysdmx.model.vtl import Transformation diff --git a/tests/model/test_message.py b/tests/model/test_message.py index 7f79b3fb..1b521a75 100644 --- a/tests/model/test_message.py +++ b/tests/model/test_message.py @@ -7,8 +7,9 @@ def test_initialization(): - message = Message({}) - assert message.content == {} + message = Message({}, {}) + assert message.structures == {} + assert message.data == {} def test_get_organisation(): @@ -16,15 +17,17 @@ def test_get_organisation(): message = Message( { "OrganisationSchemes": { - "org1:orgs1(1.0)": org1, + "AgencyScheme=org1:orgs1(1.0)": org1, } } ) assert message.get_organisation_schemes() == { - "org1:orgs1(1.0)": org1, + "AgencyScheme=org1:orgs1(1.0)": org1, } - assert message.get_organisation_scheme_by_uid("org1:orgs1(1.0)") == org1 + assert ( + message.get_organisation_scheme("AgencyScheme=org1:orgs1(1.0)") == org1 + ) def test_get_codelists(): @@ -32,15 +35,15 @@ def test_get_codelists(): message = Message( { "Codelists": { - "cl1:cl1(1.0)": cl1, + "Codelist=cl1:cl1(1.0)": cl1, } } ) assert message.get_codelists() == { - "cl1:cl1(1.0)": cl1, + "Codelist=cl1:cl1(1.0)": cl1, } - assert message.get_codelist_by_uid("cl1:cl1(1.0)") == cl1 + assert message.get_codelist("Codelist=cl1:cl1(1.0)") == cl1 def test_get_concepts(): @@ -48,15 +51,15 @@ def test_get_concepts(): message = Message( { "Concepts": { - "cs1:cs1(1.0)": cs1, + "ConceptScheme=cs1:cs1(1.0)": cs1, } } ) assert message.get_concept_schemes() == { - "cs1:cs1(1.0)": cs1, + "ConceptScheme=cs1:cs1(1.0)": cs1, } - assert message.get_concept_scheme_by_uid("cs1:cs1(1.0)") == cs1 + assert message.get_concept_scheme("ConceptScheme=cs1:cs1(1.0)") == cs1 def test_empty_get_elements(): @@ -77,31 +80,31 @@ def test_empty_get_elements(): assert "No Concepts found" in str(exc_info.value.title) -def test_empty_get_element_by_uid(): +def test_empty_get_element_by_short_urn(): message = Message({}) with pytest.raises(NotFound) as exc_info: - message.get_organisation_scheme_by_uid("org1:orgs1(1.0)") + message.get_organisation_scheme("AgencyScheme=org1:orgs1(1.0)") assert "No OrganisationSchemes found" in str(exc_info.value.title) with pytest.raises(NotFound) as exc_info: - message.get_codelist_by_uid("cl1:cl1(1.0)") + message.get_codelist("Codelist=cl1:cl1(1.0)") assert "No Codelists found" in str(exc_info.value.title) with pytest.raises(NotFound) as exc_info: - message.get_concept_scheme_by_uid("cs1:cs1(1.0)") + message.get_concept_scheme("ConceptScheme=cs1:cs1(1.0)") assert "No Concepts found" in str(exc_info.value.title) -def test_invalid_get_element_by_uid(): +def test_invalid_get_element_by_short_urn(): message = Message({"OrganisationSchemes": {}}) - e_m = "No OrganisationSchemes with id" + e_m = "No OrganisationSchemes with Short URN" with pytest.raises(NotFound) as exc_info: - message.get_organisation_scheme_by_uid("org12:orgs1(1.0)") + message.get_organisation_scheme("AgencyScheme=org12:orgs1(1.0)") assert e_m in str(exc_info.value.title) @@ -115,9 +118,9 @@ def test_invalid_initialization_content_key(): @pytest.mark.parametrize( ("key", "value"), [ - ("OrganisationSchemes", {"org1:orgs1(1.0)": "invalid"}), - ("Codelists", {"cl1:cl1(1.0)": "invalid"}), - ("Concepts", {"cs1:cs1(1.0)": "invalid"}), + ("OrganisationSchemes", {"AgencyScheme=org1:orgs1(1.0)": "invalid"}), + ("Codelists", {"Codelist=cl1:cl1(1.0)": "invalid"}), + ("Concepts", {"ConceptScheme=cs1:cs1(1.0)": "invalid"}), ], ) def test_invalid_initialization_content_value(key, value): diff --git a/tests/model/test_submission.py b/tests/model/test_submission.py index c6ad6c7c..e7f3fa69 100644 --- a/tests/model/test_submission.py +++ b/tests/model/test_submission.py @@ -1,6 +1,6 @@ import pytest -from pysdmx.model.message import SubmissionResult +from pysdmx.model.submission import SubmissionResult @pytest.fixture() From 617aa4cf8b8b7167f6434be3c487321498d68605 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 12:05:42 +0100 Subject: [PATCH 03/62] Linting and mypy changes Signed-off-by: javier.hernandez --- src/pysdmx/io/reader.py | 21 ++++++------ .../io/xml/sdmx21/reader/metadata_read.py | 3 +- src/pysdmx/model/message.py | 34 +++++++++++-------- src/pysdmx/model/submission.py | 2 ++ 4 files changed, 35 insertions(+), 25 deletions(-) diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 1dfadf23..985277cf 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -1,7 +1,9 @@ +"""SDMX All formats reader module.""" + from enum import Enum from io import BytesIO from pathlib import Path -from typing import Union, Any +from typing import Union from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read @@ -19,8 +21,7 @@ class ReadFormat(Enum): SDMX_CSV_2_0 = "SDMX-CSV 2.0" def check_extension(self, extension: str) -> bool: - """ - Check if the extension is valid for the format. + """Check if the extension is valid for the format. Args: extension: The file extension. @@ -40,7 +41,8 @@ def check_extension(self, extension: str) -> bool: return True return False - def __str__(self): + def __str__(self) -> str: + """Return the string representation of the format.""" return self.value @@ -50,11 +52,12 @@ def read_sdmx( validate: bool = True, use_dataset_id: bool = False, ) -> Message: - """ - Reads any sdmx file and returns a dictionary. + """Reads any sdmx file and returns a dictionary. Supported metadata formats are: - SDMX-ML 2.1 + - SDMX JSON 2.0.0 + - FusionJSON Supported data formats are: - SDMX-ML 2.1 @@ -65,7 +68,7 @@ def read_sdmx( infile: Path to file (pathlib.Path), URL, or string. format: Enumerated format of the SDMX file. use_dataset_id: Whether to use the dataset ID as - the key in the resulting dictionary (only for SDMX-ML). + the key in the resulting dictionary (only for SDMX-ML). validate: Validate the input file (only for SDMX-ML). Returns: @@ -74,7 +77,6 @@ def read_sdmx( Raises: Invalid: If the file is empty or the format is not supported. """ - input_str, ext = process_string_to_read(infile) if not format.check_extension(ext): raise Invalid(f"Invalid format {format} for extension {ext}.") @@ -99,10 +101,9 @@ def read_sdmx( if len(result) == 0: raise Invalid("Empty SDMX Message") - # Additional processing for all formats will be placed here - # TODO: Add here the Schema download for Datasets, based on structure + # Returning a Message class if format in (ReadFormat.SDMX_CSV_1_0, ReadFormat.SDMX_CSV_2_0): return Message(data=result) diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py index dd2957c8..564f3eba 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py @@ -51,6 +51,7 @@ CLS, CODE, CON, + CONCEPTS, CONTACT, CS, DEPARTMENT, @@ -73,6 +74,7 @@ IS_PARTIAL, IS_PARTIAL_LOW, NAME, + ORGS, ROLE, SER_URL, SER_URL_LOW, @@ -116,7 +118,6 @@ DataStructureDefinition, Role, ) -from pysdmx.io.xml.sdmx21.__parsing_config import CONCEPTS, ORGS from pysdmx.model.vtl import Transformation, TransformationScheme from pysdmx.util import find_by_urn, parse_urn diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 7d7638fa..5b967a5a 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -12,9 +12,9 @@ SubmissionResult: Class that represents the result of a submission. """ -import uuid from datetime import datetime, timezone from typing import Any, Dict, Optional, Union +import uuid from msgspec import Struct @@ -23,8 +23,8 @@ from pysdmx.io.xml.sdmx21.reader.__utils import DFWS from pysdmx.model import Codelist, ConceptScheme from pysdmx.model.__base import ItemScheme -from pysdmx.model.dataflow import DataStructureDefinition, Dataflow -from pysdmx.model.dataset import Dataset, ActionType +from pysdmx.model.dataflow import Dataflow, DataStructureDefinition +from pysdmx.model.dataset import ActionType, Dataset class Header(Struct, kw_only=True): @@ -61,6 +61,9 @@ class Message(Struct, frozen=True): content type (e.g. ``OrganisationSchemes``, ``Codelists``, etc.), and the values are the content objects (e.g. ``ItemScheme``, ``Codelist``, etc.). + data (dict): Content of the Data Message. + The keys are the dataset short URNs, and the values + are the Dataset objects. """ structures: Optional[ @@ -94,7 +97,8 @@ def __post_init__(self) -> None: for obj_ in content_value.values(): if not isinstance(obj_, MSG_CONTENT_PKG[content_key]): raise Invalid( - f"Invalid content value type: {type(obj_).__name__} " + f"Invalid content value type: " + f"{type(obj_).__name__} " f"for {content_key}", "Check the docs for the proper " "structure on structures.", @@ -103,29 +107,31 @@ def __post_init__(self) -> None: for data_key, data_value in self.data.items(): if not isinstance(data_value, Dataset): raise Invalid( - f"Invalid data value type: {type(data_value).__name__} " + f"Invalid data value type: " + f"{type(data_value).__name__} " f"for {data_key}", "Check the docs for the proper structure on data.", ) def __get_elements(self, type_: str) -> Dict[str, Any]: """Returns the elements from content.""" - if type_ in self.structures: + + if self.structures is not None and type_ in self.structures: return self.structures[type_] raise NotFound( f"No {type_} found in content", f"Could not find any {type_} in content.", ) - def __get_single_element(self, type_: str, short_urn: str) -> Any: + def __get_single_structure(self, type_: str, short_urn: str) -> Any: """Returns a specific element from content.""" - if type_ not in self.structures: + if self.structures is not None and type_ not in self.structures: raise NotFound( f"No {type_} found.", f"Could not find any {type_} in content.", ) - if short_urn in self.structures[type_]: + if self.structures is not None and short_urn in self.structures[type_]: return self.structures[type_][short_urn] raise NotFound( @@ -157,22 +163,22 @@ def get_dataflows(self) -> Dict[str, Dataflow]: def get_organisation_scheme(self, short_urn: str) -> ItemScheme: """Returns a specific OrganisationScheme.""" - return self.__get_single_element(ORGS, short_urn) + return self.__get_single_structure(ORGS, short_urn) def get_codelist(self, short_urn: str) -> Codelist: """Returns a specific Codelist.""" - return self.__get_single_element(CLS, short_urn) + return self.__get_single_structure(CLS, short_urn) def get_concept_scheme(self, short_urn: str) -> ConceptScheme: """Returns a specific Concept.""" - return self.__get_single_element(CONCEPTS, short_urn) + return self.__get_single_structure(CONCEPTS, short_urn) def get_data_structure_definition( self, short_urn: str ) -> DataStructureDefinition: """Returns a specific DataStructureDefinition.""" - return self.__get_single_element(DSDS, short_urn) + return self.__get_single_structure(DSDS, short_urn) def get_dataflow(self, short_urn: str) -> Dataflow: """Returns a specific Dataflow.""" - return self.__get_single_element(DFWS, short_urn) + return self.__get_single_structure(DFWS, short_urn) diff --git a/src/pysdmx/model/submission.py b/src/pysdmx/model/submission.py index 7e5c6743..7dead2b6 100644 --- a/src/pysdmx/model/submission.py +++ b/src/pysdmx/model/submission.py @@ -1,3 +1,5 @@ +"""A module to represent a Submission Result.""" + from msgspec import Struct From 2c2cab32f8c6c8086ce7a0558f5d4ba09fc71f20 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 14:29:54 +0100 Subject: [PATCH 04/62] Refactored code to ensure we use the Short URN as keys of the message content. Use ItemReference as ConceptIdentity if necessary. Fixed tests accordingly. Signed-off-by: javier.hernandez --- src/pysdmx/io/xml/sdmx21/reader/__utils.py | 2 +- .../io/xml/sdmx21/reader/metadata_read.py | 64 +++++++++++++------ src/pysdmx/io/xml/sdmx21/writer/structure.py | 12 ++-- src/pysdmx/model/dataflow.py | 3 +- .../sdmx21/writer/test_structures_writing.py | 32 +++------- 5 files changed, 64 insertions(+), 49 deletions(-) diff --git a/src/pysdmx/io/xml/sdmx21/reader/__utils.py b/src/pysdmx/io/xml/sdmx21/reader/__utils.py index 3bac0ea2..b3964267 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__utils.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__utils.py @@ -98,7 +98,7 @@ AGENCIES = "AgencyScheme" ORGS = "OrganisationSchemes" CLS = "Codelists" -CONCEPTS = "ConceptSchemes" +CONCEPTS = "Concepts" CS = "ConceptScheme" CODE = "Code" DFW = "Dataflow" diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py index 564f3eba..a43b0c58 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py @@ -1,10 +1,11 @@ """Parsers for reading metadata.""" - +from copy import copy from datetime import datetime from typing import Any, Dict, List, Optional from msgspec import Struct +from pysdmx.errors import Invalid from pysdmx.io.xml.sdmx21.__parsing_config import ( AS_STATUS, ATT, @@ -35,7 +36,7 @@ REF, REQUIRED, TEXT_FORMAT, - TIME_DIM, + TIME_DIM, PAR_ID, PAR_VER, ) from pysdmx.io.xml.sdmx21.reader.__utils import ( AGENCIES, @@ -108,7 +109,7 @@ Concept, ConceptScheme, DataType, - Facets, + Facets, AgencyScheme, ) from pysdmx.model.__base import Agency, Annotation, Contact, Item, ItemScheme from pysdmx.model.dataflow import ( @@ -119,11 +120,11 @@ Role, ) from pysdmx.model.vtl import Transformation, TransformationScheme -from pysdmx.util import find_by_urn, parse_urn +from pysdmx.util import find_by_urn, parse_urn, Reference, ItemReference STRUCTURES_MAPPING = { CL: Codelist, - AGENCIES: ItemScheme, + AGENCIES: AgencyScheme, CS: ConceptScheme, DFWS: Dataflow, DSDS: DataStructureDefinition, @@ -335,8 +336,13 @@ def __format_representation( ).codes else: - id = unique_id(ref[AGENCY_ID], ref[ID], ref[VERSION]) - codelist = self.codelists[id] + short_urn = str(Reference( + sdmx_type=ref[CLASS], + agency=ref[AGENCY_ID], + id=ref[ID], + version=ref[VERSION] + )) + codelist = self.codelists[short_urn] json_obj[CODES_LOW] = codelist if ENUM_FORMAT in json_rep: @@ -359,9 +365,29 @@ def __format_local_rep(self, representation_info: Dict[str, Any]) -> None: def __format_con_id(self, concept_ref: Dict[str, Any]) -> Dict[str, Any]: rep = {} - id = concept_ref[ID] + item_reference = ItemReference( + sdmx_type=concept_ref[CLASS], + agency=concept_ref[AGENCY_ID], + id=concept_ref[PAR_ID], + version=concept_ref[PAR_VER], + item_id=concept_ref[ID] + ) + scheme_reference = Reference( + sdmx_type=CS, + agency=concept_ref[AGENCY_ID], + id=concept_ref[PAR_ID], + version=concept_ref[PAR_VER] + ) - rep[CON] = self.concepts[id] + concept_scheme = self.concepts.get(str(scheme_reference)) + if concept_scheme is None: + return {CON: item_reference} + for con in concept_scheme.concepts: + if con.id == concept_ref[ID]: + rep[CON] = con + break + if CON not in rep: + return {CON: item_reference} return rep def __format_relationship(self, json_rel: Dict[str, Any]) -> Optional[str]: @@ -386,8 +412,8 @@ def __format_component( self.__format_local_rep(comp) if LOCAL_REP in comp else None - rep = self.__format_con_id(comp[CON_ID][REF]) - comp[CON_LOW] = rep.pop(CON) + concept_id = self.__format_con_id(comp[CON_ID][REF]) + comp[CON_LOW] = concept_id.pop(CON) del comp[CON_ID] # Attribute Handling @@ -491,8 +517,8 @@ def __format_item( def __format_scheme( self, json_elem: Dict[str, Any], scheme: str, item: str - ) -> Dict[str, Any]: - elements: Dict[str, Any] = {} + ) -> Dict[str, ItemScheme]: + elements: Dict[str, ItemScheme] = {} json_elem[scheme] = add_list(json_elem[scheme]) for element in json_elem[scheme]: @@ -500,9 +526,6 @@ def __format_scheme( element = self.__format_annotations(element) element = self.__format_name_description(element) - full_id = unique_id( - element[AGENCY_ID], element[ID], element[VERSION] - ) element = self.__format_urls(element) if IS_EXTERNAL_REF in element: element[IS_EXTERNAL_REF_LOW] = ( @@ -519,15 +542,12 @@ def __format_scheme( items.append(self.__format_item(item_elem, item)) del element[item] element["items"] = items - if scheme == AGENCIES: - self.agencies.update({e.id: e for e in items}) - if scheme == CS: - self.concepts.update({e.id: e for e in items}) element = self.__format_agency(element) element = self.__format_validity(element) element = self.__format_vtl(element) # Dynamic creation with specific class - elements[full_id] = STRUCTURES_MAPPING[scheme](**element) + result: ItemScheme = STRUCTURES_MAPPING[scheme](**element) + elements[result.short_urn()] = result return elements @@ -611,6 +631,7 @@ def format_structures(self, json_meta: Dict[str, Any]) -> Dict[str, Any]: if ORGS in json_meta: structures[ORGS] = self.__format_orgs(json_meta[ORGS]) + self.agencies = structures[ORGS] if CLS in json_meta: structures[CLS] = self.__format_scheme(json_meta[CLS], CL, CODE) self.codelists = structures[CLS] @@ -618,6 +639,7 @@ def format_structures(self, json_meta: Dict[str, Any]) -> Dict[str, Any]: structures[CONCEPTS] = self.__format_scheme( json_meta[CONCEPTS], CS, CON ) + self.concepts = structures[CONCEPTS] if DSDS in json_meta: structures[DSDS] = self.__format_schema(json_meta[DSDS], DSDS, DSD) if DFWS in json_meta: diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 4e650ae1..9bc56980 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -70,7 +70,8 @@ DataStructureDefinition, Role, ) -from pysdmx.util import parse_item_urn, parse_short_urn, parse_urn +from pysdmx.util import parse_item_urn, parse_short_urn, parse_urn, \ + ItemReference ANNOTATION_WRITER = OrderedDict( { @@ -384,14 +385,17 @@ def __write_component( return outfile -def __write_concept_identity(concept: Concept, indent: str) -> str: - ref = parse_item_urn(concept.urn) # type: ignore[arg-type] +def __write_concept_identity(identity: Union[Concept, ItemReference], indent: str) -> str: + if isinstance(identity, ItemReference): + ref = identity + else: + ref = parse_item_urn(identity.urn) outfile = f"{indent}<{ABBR_STR}:{CON_ID}>" outfile += f"{add_indent(indent)}<{REF} " outfile += f"{AGENCY_ID}={ref.agency!r} " outfile += f"{CLASS}={CON!r} " - outfile += f"{ID}={concept.id!r} " + outfile += f"{ID}={ref.item_id!r} " outfile += f"{PAR_ID}={ref.id!r} " outfile += f"{PAR_VER}={ref.version!r} " outfile += f"{PACKAGE}={CS.lower()!r}/>" diff --git a/src/pysdmx/model/dataflow.py b/src/pysdmx/model/dataflow.py index 270a5a16..32d98204 100644 --- a/src/pysdmx/model/dataflow.py +++ b/src/pysdmx/model/dataflow.py @@ -22,6 +22,7 @@ ) from pysdmx.model.code import Codelist, Hierarchy from pysdmx.model.concept import Concept, DataType, Facets +from pysdmx.util import ItemReference class Role(str, Enum): @@ -108,7 +109,7 @@ class Component(Struct, frozen=True, omit_defaults=True): id: str required: bool role: Role - concept: Concept + concept: Union[Concept, ItemReference] local_dtype: Optional[DataType] = None local_facets: Optional[Facets] = None name: Optional[str] = None diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index ffae9eec..3e33f814 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -174,11 +174,11 @@ def concept(): @pytest.fixture() def concept_ds(): return ConceptScheme( - urn="urn:sdmx: org.sdmx.infomodel.conceptscheme." - "ConceptScheme = BIS:CS_FREQ(1.0)", - uri="urn:sdmx: org.sdmx.infomodel.conceptscheme." - "ConceptScheme = BIS:CS_FREQ(1.0)", - id="freq", + urn="urn:sdmx:org.sdmx.infomodel.conceptscheme." + "ConceptScheme=BIS:CS_FREQ(1.0)", + uri="urn:sdmx:org.sdmx.infomodel.conceptscheme." + "ConceptScheme=BIS:CS_FREQ(1.0)", + id="CS_FREQ", name="Frequency", version="1.0", agency="BIS", @@ -186,14 +186,14 @@ def concept_ds(): Concept( id="freq", urn="urn:sdmx:org.sdmx.infomodel.conceptscheme." - "Concept=ESTAT:HLTH_RS_PRSHP1(7.0).freq", + "Concept=BIS:CS_FREQ(1.0).freq", name="Time frequency", annotations=(), ), Concept( id="OBS_VALUE", urn="urn:sdmx:org.sdmx.infomodel.conceptscheme." - "Concept=ESTAT:HLTH_RS_PRSHP1(7.0).OBS_VALUE", + "Concept=BIS:CS_FREQ(1.0).OBS_VALUE", name="Observation value", annotations=(), ), @@ -220,13 +220,7 @@ def datastructure(concept_ds): id="freq_dim", required=True, role=Role.DIMENSION, - concept=Concept( - id="freq", - urn="urn:sdmx:org.sdmx.infomodel.conceptscheme." - "Concept=ESTAT:HLTH_RS_PRSHP1(7.0).freq", - name="Time frequency", - annotations=(), - ), + concept=concept_ds.concepts[0], local_facets=Facets(min_length="1", max_length="1"), urn="urn:sdmx:org.sdmx.infomodel.datastructure." "TimeDimension=ESTAT:HLTH_RS_PRSHP1(7.0).FREQ", @@ -235,13 +229,7 @@ def datastructure(concept_ds): id="OBS_VALUE", required=True, role=Role.MEASURE, - concept=Concept( - id="OBS_VALUE", - urn="urn:sdmx:org.sdmx.infomodel.conceptscheme." - "Concept=ESTAT:HLTH_RS_PRSHP1(7.0).OBS_VALUE", - name="Observation value", - annotations=(), - ), + concept=concept_ds.concepts[1], urn="urn:sdmx:org.sdmx.infomodel.datastructure." "PrimaryMeasure=ESTAT:HLTH_RS_PRSHP1(7.0).OBS_VALUE", ), @@ -389,7 +377,7 @@ def test_read_write(read_write_sample, read_write_header): def test_write_read(complete_header, datastructure, dataflow, concept_ds): content = { - "Concepts": {"BIS:freq(1.0)": concept_ds}, + "Concepts": {concept_ds.short_urn(): concept_ds}, "DataStructures": { "DataStructure=ESTAT:HLTH_RS_PRSHP1(7.0)": datastructure }, From ffb2a8e178f8f569b0bc6132b06a3801880367d3 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 14:30:29 +0100 Subject: [PATCH 05/62] Added tests for read_sdmx with csv files. Signed-off-by: javier.hernandez --- src/pysdmx/io/input_processor.py | 22 ++++++++++++-- src/pysdmx/io/reader.py | 2 +- tests/io/csv/sdmx10/reader/test_reader_v1.py | 17 +++++++++++ tests/io/csv/sdmx20/reader/test_reader_v2.py | 30 ++++++++++++++++++-- tests/io/xml/sdmx21/reader/test_reader.py | 15 +++++----- 5 files changed, 73 insertions(+), 13 deletions(-) diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 3be8d21f..0121b8d1 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -1,11 +1,13 @@ """Processes the input that comes into read_sdmx function.""" - -from io import BytesIO, TextIOWrapper +import os.path +from io import BytesIO, TextIOWrapper, StringIO from json import JSONDecodeError, loads from os import PathLike from pathlib import Path from typing import Tuple, Union +import pandas as pd + from pysdmx.errors import Invalid @@ -19,6 +21,16 @@ def __check_xml(infile: str) -> bool: return False +def __check_csv(infile: str) -> bool: + try: + pd.read_csv(StringIO(infile), nrows=2) + if len(infile.splitlines()) > 1: + return True + elif infile.splitlines()[0].count(",") > 1: + return True + except Exception as e: + return False + def process_string_to_read( infile: Union[str, Path, BytesIO] @@ -34,6 +46,8 @@ def process_string_to_read( Raises: Invalid: If the input cannot be parsed as SDMX. """ + if isinstance(infile, str) and os.path.exists(infile): + infile = Path(infile) # Read file as string if isinstance(infile, (Path, PathLike)): with open(infile, "r", encoding="utf-8-sig", errors="replace") as f: @@ -64,6 +78,10 @@ def process_string_to_read( if __check_xml(out_str): return out_str, "xml" + # Check if string is a valid CSV + if __check_csv(out_str): + return out_str, "csv" + raise Invalid( "Validation Error", f"Cannot parse input as SDMX. Found {infile}" ) diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 985277cf..51a63246 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -52,7 +52,7 @@ def read_sdmx( validate: bool = True, use_dataset_id: bool = False, ) -> Message: - """Reads any sdmx file and returns a dictionary. + """Reads any sdmx file or buffer and returns a dictionary. Supported metadata formats are: - SDMX-ML 2.1 diff --git a/tests/io/csv/sdmx10/reader/test_reader_v1.py b/tests/io/csv/sdmx10/reader/test_reader_v1.py index 36155fa7..01ccd32b 100644 --- a/tests/io/csv/sdmx10/reader/test_reader_v1.py +++ b/tests/io/csv/sdmx10/reader/test_reader_v1.py @@ -3,7 +3,9 @@ import pytest from pysdmx.errors import Invalid +from pysdmx.io import read_sdmx from pysdmx.io.csv.sdmx10.reader import read +from pysdmx.io.reader import ReadFormat @pytest.fixture() @@ -33,6 +35,21 @@ def test_reading_data_v1(data_path): assert len(df) == 1000 assert "DATAFLOW" not in df.columns +def test_reading_sdmx_csv_v1(data_path): + dataset_dict = read_sdmx(data_path, format=ReadFormat.SDMX_CSV_1_0).data + assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict + df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + assert len(df) == 1000 + assert "DATAFLOW" not in df.columns + +def test_reading_sdmx_csv_v1_string(data_path): + with open(data_path, "r") as f: + infile = f.read() + dataset_dict = read_sdmx(infile, format=ReadFormat.SDMX_CSV_1_0).data + assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict + df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + assert len(df) == 1000 + assert "DATAFLOW" not in df.columns def test_reading_data_v1_exception(data_path_exception): with open(data_path_exception, "r") as f: diff --git a/tests/io/csv/sdmx20/reader/test_reader_v2.py b/tests/io/csv/sdmx20/reader/test_reader_v2.py index dd82e8a0..b084be12 100644 --- a/tests/io/csv/sdmx20/reader/test_reader_v2.py +++ b/tests/io/csv/sdmx20/reader/test_reader_v2.py @@ -3,7 +3,9 @@ import pytest from pysdmx.errors import Invalid +from pysdmx.io import read_sdmx from pysdmx.io.csv.sdmx20.reader import read +from pysdmx.io.reader import ReadFormat @pytest.fixture() @@ -39,7 +41,7 @@ def data_path_structures(): @pytest.fixture() def data_path_structures_exc(): base_path = ( - Path(__file__).parent / "samples" / "data_v2_structures_exception.csv" + Path(__file__).parent / "samples" / "data_v2_structures_exception.csv" ) return base_path @@ -59,7 +61,7 @@ def data_path_three_actions(): @pytest.fixture() def data_path_invalid_action(): base_path = ( - Path(__file__).parent / "samples" / "data_v2_invalid_action.csv" + Path(__file__).parent / "samples" / "data_v2_invalid_action.csv" ) return base_path @@ -76,6 +78,28 @@ def test_reading_data_v2(data_path): assert "ACTION" not in df.columns +def test_reading_sdmx_csv_v2(data_path): + dataset_dict = read_sdmx(data_path, format=ReadFormat.SDMX_CSV_2_0).data + assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict + df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + assert len(df) == 1000 + assert "STRUCTURE" not in df.columns + assert "STRUCTURE_ID" not in df.columns + assert "ACTION" not in df.columns + + +def test_reading_sdmx_csv_v2_string(data_path): + with open(data_path, "r") as f: + infile = f.read() + dataset_dict = read_sdmx(infile, format=ReadFormat.SDMX_CSV_2_0).data + assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict + df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + assert len(df) == 1000 + assert "STRUCTURE" not in df.columns + assert "STRUCTURE_ID" not in df.columns + assert "ACTION" not in df.columns + + def test_reading_v2_exception(data_path_exception): with open(data_path_exception, "r") as f: infile = f.read() @@ -134,7 +158,7 @@ def test_reading_three_actions(data_path_three_actions): with open(data_path_three_actions, "r") as f: infile = f.read() with pytest.raises( - Invalid, match="Cannot have more than one value on ACTION column" + Invalid, match="Cannot have more than one value on ACTION column" ): read(infile) diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index 79d8e999..cc3ba29c 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -55,7 +55,7 @@ def test_agency_scheme_read(agency_scheme_path): assert "OrganisationSchemes" in result agency_scheme = result["OrganisationSchemes"] assert len(agency_scheme) == 1 - agency_sdmx = agency_scheme["SDMX:AGENCIES(1.0)"].items[0] + agency_sdmx = agency_scheme["AgencyScheme=SDMX:AGENCIES(1.0)"].items[0] assert agency_sdmx.id == "SDMX" assert agency_sdmx.name == "SDMX" @@ -68,7 +68,7 @@ def test_code_list_read(codelist_path): assert "Codelists" in result codelists = result["Codelists"] assert len(codelists) == 5 - codelist_sdmx = codelists["SDMX:CL_UNIT_MULT(1.0)"] + codelist_sdmx = codelists["Codelist=SDMX:CL_UNIT_MULT(1.0)"] assert codelist_sdmx.id == "CL_UNIT_MULT" assert ( codelist_sdmx.name == "code list for the Unit Multiplier (UNIT_MULT)" @@ -89,10 +89,10 @@ def test_item_scheme_read(item_scheme_path): # Agency Scheme (OrganisationSchemes) assertions agency_scheme = result["OrganisationSchemes"] assert len(agency_scheme) == 1 - agency_sdmx = agency_scheme["SDMX:AGENCIES(1.0)"].items[0] + agency_sdmx = agency_scheme["AgencyScheme=SDMX:AGENCIES(1.0)"].items[0] assert agency_sdmx.id == "SDMX" assert agency_sdmx.name == "SDMX" - agency_uis = agency_scheme["SDMX:AGENCIES(1.0)"].items[2] + agency_uis = agency_scheme["AgencyScheme=SDMX:AGENCIES(1.0)"].items[2] assert agency_uis.id == "UIS" assert isinstance(agency_uis.contacts[0], Contact) @@ -101,7 +101,7 @@ def test_item_scheme_read(item_scheme_path): # Codelist codelists = result["Codelists"] assert len(codelists) == 5 - codelist_sdmx = codelists["SDMX:CL_UNIT_MULT(1.0)"] + codelist_sdmx = codelists["Codelist=SDMX:CL_UNIT_MULT(1.0)"] assert codelist_sdmx.id == "CL_UNIT_MULT" assert ( codelist_sdmx.name == "code list for the " @@ -113,7 +113,8 @@ def test_item_scheme_read(item_scheme_path): # Concept concepts = result["Concepts"] assert len(concepts) == 1 - concept_scheme_sdmx = concepts["SDMX:CROSS_DOMAIN_CONCEPTS(1.0)"] + concept_scheme_sdmx = concepts[("ConceptScheme=" + "SDMX:CROSS_DOMAIN_CONCEPTS(1.0)")] assert concept_scheme_sdmx.id == "CROSS_DOMAIN_CONCEPTS" assert concept_scheme_sdmx.name == "SDMX Cross Domain Concept Scheme" assert concept_scheme_sdmx.items[0].id == "COLL_METHOD" @@ -341,7 +342,7 @@ def test_vtl_transformation_scheme(samples_folder): result = read_xml(input_str, validate=True) assert "Transformations" in result assert len(result["Transformations"]) == 1 - transformation_scheme = result["Transformations"]["SDMX:TEST(1.0)"] + transformation_scheme = result["Transformations"]["TransformationScheme=SDMX:TEST(1.0)"] assert transformation_scheme.id == "TEST" assert transformation_scheme.name == "TEST" assert transformation_scheme.description == "TEST Transformation Scheme" From 01f5489b9127ead676a3483deda7e811294d061f Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 15:01:07 +0100 Subject: [PATCH 06/62] Linting and mypy changes. Signed-off-by: javier.hernandez --- src/pysdmx/io/input_processor.py | 16 ++++++---- .../io/xml/sdmx21/reader/metadata_read.py | 30 +++++++++++-------- src/pysdmx/io/xml/sdmx21/writer/structure.py | 14 ++++++--- src/pysdmx/model/dataflow.py | 6 ++-- src/pysdmx/model/message.py | 1 - tests/io/csv/sdmx10/reader/test_reader_v1.py | 3 ++ tests/io/csv/sdmx20/reader/test_reader_v2.py | 6 ++-- tests/io/xml/sdmx21/reader/test_reader.py | 9 ++++-- 8 files changed, 52 insertions(+), 33 deletions(-) diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 0121b8d1..d005faff 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -1,8 +1,9 @@ """Processes the input that comes into read_sdmx function.""" -import os.path -from io import BytesIO, TextIOWrapper, StringIO + +from io import BytesIO, StringIO, TextIOWrapper from json import JSONDecodeError, loads from os import PathLike +import os.path from pathlib import Path from typing import Tuple, Union @@ -21,15 +22,18 @@ def __check_xml(infile: str) -> bool: return False + def __check_csv(infile: str) -> bool: try: pd.read_csv(StringIO(infile), nrows=2) - if len(infile.splitlines()) > 1: - return True - elif infile.splitlines()[0].count(",") > 1: + if ( + len(infile.splitlines()) > 1 + or infile.splitlines()[0].count(",") > 1 + ): return True - except Exception as e: + except Exception: return False + return False def process_string_to_read( diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py index a43b0c58..4315c7f2 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py @@ -1,11 +1,10 @@ """Parsers for reading metadata.""" -from copy import copy + from datetime import datetime from typing import Any, Dict, List, Optional from msgspec import Struct -from pysdmx.errors import Invalid from pysdmx.io.xml.sdmx21.__parsing_config import ( AS_STATUS, ATT, @@ -32,11 +31,13 @@ LOCAL_REP, MANDATORY, ME_LIST, + PAR_ID, + PAR_VER, PRIM_MEASURE, REF, REQUIRED, TEXT_FORMAT, - TIME_DIM, PAR_ID, PAR_VER, + TIME_DIM, ) from pysdmx.io.xml.sdmx21.reader.__utils import ( AGENCIES, @@ -104,12 +105,13 @@ ) from pysdmx.io.xml.utils import add_list from pysdmx.model import ( + AgencyScheme, Code, Codelist, Concept, ConceptScheme, DataType, - Facets, AgencyScheme, + Facets, ) from pysdmx.model.__base import Agency, Annotation, Contact, Item, ItemScheme from pysdmx.model.dataflow import ( @@ -120,7 +122,7 @@ Role, ) from pysdmx.model.vtl import Transformation, TransformationScheme -from pysdmx.util import find_by_urn, parse_urn, Reference, ItemReference +from pysdmx.util import find_by_urn, ItemReference, parse_urn, Reference STRUCTURES_MAPPING = { CL: Codelist, @@ -336,12 +338,14 @@ def __format_representation( ).codes else: - short_urn = str(Reference( - sdmx_type=ref[CLASS], - agency=ref[AGENCY_ID], - id=ref[ID], - version=ref[VERSION] - )) + short_urn = str( + Reference( + sdmx_type=ref[CLASS], + agency=ref[AGENCY_ID], + id=ref[ID], + version=ref[VERSION], + ) + ) codelist = self.codelists[short_urn] json_obj[CODES_LOW] = codelist @@ -370,13 +374,13 @@ def __format_con_id(self, concept_ref: Dict[str, Any]) -> Dict[str, Any]: agency=concept_ref[AGENCY_ID], id=concept_ref[PAR_ID], version=concept_ref[PAR_VER], - item_id=concept_ref[ID] + item_id=concept_ref[ID], ) scheme_reference = Reference( sdmx_type=CS, agency=concept_ref[AGENCY_ID], id=concept_ref[PAR_ID], - version=concept_ref[PAR_VER] + version=concept_ref[PAR_VER], ) concept_scheme = self.concepts.get(str(scheme_reference)) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 9bc56980..f7af9976 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -70,8 +70,12 @@ DataStructureDefinition, Role, ) -from pysdmx.util import parse_item_urn, parse_short_urn, parse_urn, \ - ItemReference +from pysdmx.util import ( + ItemReference, + parse_item_urn, + parse_short_urn, + parse_urn, +) ANNOTATION_WRITER = OrderedDict( { @@ -385,11 +389,13 @@ def __write_component( return outfile -def __write_concept_identity(identity: Union[Concept, ItemReference], indent: str) -> str: +def __write_concept_identity( + identity: Union[Concept, ItemReference], indent: str +) -> str: if isinstance(identity, ItemReference): ref = identity else: - ref = parse_item_urn(identity.urn) + ref = parse_item_urn(identity.urn) # type: ignore[arg-type] outfile = f"{indent}<{ABBR_STR}:{CON_ID}>" outfile += f"{add_indent(indent)}<{REF} " diff --git a/src/pysdmx/model/dataflow.py b/src/pysdmx/model/dataflow.py index 32d98204..ee58cf26 100644 --- a/src/pysdmx/model/dataflow.py +++ b/src/pysdmx/model/dataflow.py @@ -144,7 +144,7 @@ def dtype(self) -> DataType: """ if self.local_dtype: return self.local_dtype - elif self.concept.dtype: + elif isinstance(self.concept, Concept) and self.concept.dtype: return self.concept.dtype else: return DataType.STRING @@ -162,7 +162,7 @@ def facets(self) -> Optional[Facets]: """ if self.local_facets: return self.local_facets - elif self.concept.facets: + elif isinstance(self.concept, Concept) and self.concept.facets: return self.concept.facets else: return None @@ -180,7 +180,7 @@ def enumeration(self) -> Union[Codelist, Hierarchy, None]: """ if self.local_codes: return self.local_codes - elif self.concept.codes: + elif isinstance(self.concept, Concept) and self.concept.codes: return self.concept.codes else: return None diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 5b967a5a..a8f73ea7 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -115,7 +115,6 @@ def __post_init__(self) -> None: def __get_elements(self, type_: str) -> Dict[str, Any]: """Returns the elements from content.""" - if self.structures is not None and type_ in self.structures: return self.structures[type_] raise NotFound( diff --git a/tests/io/csv/sdmx10/reader/test_reader_v1.py b/tests/io/csv/sdmx10/reader/test_reader_v1.py index 01ccd32b..bbfa1e56 100644 --- a/tests/io/csv/sdmx10/reader/test_reader_v1.py +++ b/tests/io/csv/sdmx10/reader/test_reader_v1.py @@ -35,6 +35,7 @@ def test_reading_data_v1(data_path): assert len(df) == 1000 assert "DATAFLOW" not in df.columns + def test_reading_sdmx_csv_v1(data_path): dataset_dict = read_sdmx(data_path, format=ReadFormat.SDMX_CSV_1_0).data assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict @@ -42,6 +43,7 @@ def test_reading_sdmx_csv_v1(data_path): assert len(df) == 1000 assert "DATAFLOW" not in df.columns + def test_reading_sdmx_csv_v1_string(data_path): with open(data_path, "r") as f: infile = f.read() @@ -51,6 +53,7 @@ def test_reading_sdmx_csv_v1_string(data_path): assert len(df) == 1000 assert "DATAFLOW" not in df.columns + def test_reading_data_v1_exception(data_path_exception): with open(data_path_exception, "r") as f: infile = f.read() diff --git a/tests/io/csv/sdmx20/reader/test_reader_v2.py b/tests/io/csv/sdmx20/reader/test_reader_v2.py index b084be12..c10308bd 100644 --- a/tests/io/csv/sdmx20/reader/test_reader_v2.py +++ b/tests/io/csv/sdmx20/reader/test_reader_v2.py @@ -41,7 +41,7 @@ def data_path_structures(): @pytest.fixture() def data_path_structures_exc(): base_path = ( - Path(__file__).parent / "samples" / "data_v2_structures_exception.csv" + Path(__file__).parent / "samples" / "data_v2_structures_exception.csv" ) return base_path @@ -61,7 +61,7 @@ def data_path_three_actions(): @pytest.fixture() def data_path_invalid_action(): base_path = ( - Path(__file__).parent / "samples" / "data_v2_invalid_action.csv" + Path(__file__).parent / "samples" / "data_v2_invalid_action.csv" ) return base_path @@ -158,7 +158,7 @@ def test_reading_three_actions(data_path_three_actions): with open(data_path_three_actions, "r") as f: infile = f.read() with pytest.raises( - Invalid, match="Cannot have more than one value on ACTION column" + Invalid, match="Cannot have more than one value on ACTION column" ): read(infile) diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index cc3ba29c..69fe20ef 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -113,8 +113,9 @@ def test_item_scheme_read(item_scheme_path): # Concept concepts = result["Concepts"] assert len(concepts) == 1 - concept_scheme_sdmx = concepts[("ConceptScheme=" - "SDMX:CROSS_DOMAIN_CONCEPTS(1.0)")] + concept_scheme_sdmx = concepts[ + ("ConceptScheme=" "SDMX:CROSS_DOMAIN_CONCEPTS(1.0)") + ] assert concept_scheme_sdmx.id == "CROSS_DOMAIN_CONCEPTS" assert concept_scheme_sdmx.name == "SDMX Cross Domain Concept Scheme" assert concept_scheme_sdmx.items[0].id == "COLL_METHOD" @@ -342,7 +343,9 @@ def test_vtl_transformation_scheme(samples_folder): result = read_xml(input_str, validate=True) assert "Transformations" in result assert len(result["Transformations"]) == 1 - transformation_scheme = result["Transformations"]["TransformationScheme=SDMX:TEST(1.0)"] + transformation_scheme = result["Transformations"][ + "TransformationScheme=SDMX:TEST(1.0)" + ] assert transformation_scheme.id == "TEST" assert transformation_scheme.name == "TEST" assert transformation_scheme.description == "TEST Transformation Scheme" From ab63f013584ab2e13cbc573372747ac3d34df62f Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 15:04:30 +0100 Subject: [PATCH 07/62] Adapted structures tests to reach max code coverage Signed-off-by: javier.hernandez --- .../sdmx21/writer/test_structures_writing.py | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index 3e33f814..23e32688 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -7,6 +7,7 @@ from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.reader import read_xml +from pysdmx.io.xml.sdmx21.reader.__utils import CON from pysdmx.io.xml.sdmx21.writer import Header, writer from pysdmx.model import Agency, Code, Codelist, Concept, ConceptScheme, Facets from pysdmx.model.__base import Annotation @@ -17,6 +18,7 @@ DataStructureDefinition, Role, ) +from pysdmx.util import ItemReference TEST_CS_URN = ( "urn:sdmx:org.sdmx.infomodel.conceptscheme." @@ -225,6 +227,38 @@ def datastructure(concept_ds): urn="urn:sdmx:org.sdmx.infomodel.datastructure." "TimeDimension=ESTAT:HLTH_RS_PRSHP1(7.0).FREQ", ), + Component( + id="DIM2", + required=True, + role=Role.DIMENSION, + # Missing Concept Scheme + concept=ItemReference( + id="CS_FREQ2", + sdmx_type=CON, + agency="BIS", + version="1.0", + item_id="DIM2", + ), + local_facets=Facets(min_length="1", max_length="1"), + urn="urn:sdmx:org.sdmx.infomodel.datastructure." + "TimeDimension=ESTAT:HLTH_RS_PRSHP1(7.0).DIM2", + ), + Component( + id="DIM3", + required=True, + role=Role.DIMENSION, + # Missing Concept in Concept Identity + concept=ItemReference( + id="CS_FREQ", + sdmx_type=CON, + agency="BIS", + version="1.0", + item_id="DIM3", + ), + local_facets=Facets(min_length="1", max_length="1"), + urn="urn:sdmx:org.sdmx.infomodel.datastructure." + "TimeDimension=ESTAT:HLTH_RS_PRSHP1(7.0).DIM2", + ), Component( id="OBS_VALUE", required=True, From 8b960d25c344ccc88d39aa7f007ee1621e71eea5 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 15:28:49 +0100 Subject: [PATCH 08/62] Removed unique_id method and adapted code to use Reference. Signed-off-by: javier.hernandez --- src/pysdmx/io/xml/sdmx21/reader/__utils.py | 14 ----------- .../io/xml/sdmx21/reader/metadata_read.py | 23 +++++++++---------- 2 files changed, 11 insertions(+), 26 deletions(-) diff --git a/src/pysdmx/io/xml/sdmx21/reader/__utils.py b/src/pysdmx/io/xml/sdmx21/reader/__utils.py index b3964267..7e44a8fa 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__utils.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__utils.py @@ -124,17 +124,3 @@ "endTime": "end_time", "isSequence": "is_sequence", } - - -def unique_id(agencyID: str, id_: str, version: str) -> str: - """Create a unique ID for an object. - - Args: - agencyID: The agency ID - id_: The ID of the object - version: The version of the object - - Returns: - A string with the unique ID - """ - return f"{agencyID}:{id_}({version})" diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py index 4315c7f2..5ea6d1bd 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py @@ -92,7 +92,6 @@ TRANSFORMATION, TRANSFORMATIONS, TYPE, - unique_id, URI, URIS, URL, @@ -568,17 +567,19 @@ def __format_schema( Returns: A dictionary with the structures formatted """ - datastructures = {} + schemas = {} json_element[item] = add_list(json_element[item]) for element in json_element[item]: if URN.lower() in element and element[URN.lower()] is not None: - full_id = parse_urn(element[URN.lower()]).__str__() + short_urn = parse_urn(element[URN.lower()]).__str__() else: - full_id = unique_id( - element[AGENCY_ID], element[ID], element[VERSION] - ) - full_id = f"{item}={full_id}" + short_urn = Reference( + sdmx_type=item, + agency=element[AGENCY_ID], + id=element[ID], + version=element[VERSION], + ).__str__() element = self.__format_annotations(element) element = self.__format_name_description(element) @@ -614,12 +615,9 @@ def __format_schema( structure[COMPS] = Components(structure[COMPS]) else: structure[COMPS] = Components([]) - self.datastructures[full_id] = STRUCTURES_MAPPING[schema]( - **structure - ) - datastructures[full_id] = STRUCTURES_MAPPING[schema](**structure) + schemas[short_urn] = STRUCTURES_MAPPING[schema](**structure) - return datastructures + return schemas def format_structures(self, json_meta: Dict[str, Any]) -> Dict[str, Any]: """Formats the structures in json format. @@ -646,6 +644,7 @@ def format_structures(self, json_meta: Dict[str, Any]) -> Dict[str, Any]: self.concepts = structures[CONCEPTS] if DSDS in json_meta: structures[DSDS] = self.__format_schema(json_meta[DSDS], DSDS, DSD) + self.datastructures = structures[DSDS] if DFWS in json_meta: structures[DFWS] = self.__format_schema(json_meta[DFWS], DFWS, DFW) From 41e7a8de42294fcb5bbf0e58acd204ecc460505a Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 15:32:46 +0100 Subject: [PATCH 09/62] Added utils methods and classes to all. Signed-off-by: javier.hernandez --- src/pysdmx/util/__init__.py | 10 +++++++++- tests/io/xml/sdmx21/writer/test_structures_writing.py | 2 +- 2 files changed, 10 insertions(+), 2 deletions(-) diff --git a/src/pysdmx/util/__init__.py b/src/pysdmx/util/__init__.py index d2f04ac6..3f938d66 100644 --- a/src/pysdmx/util/__init__.py +++ b/src/pysdmx/util/__init__.py @@ -130,4 +130,12 @@ def find_by_urn(artefacts: Sequence[Any], urn: str) -> Any: ) -__all__ = ["convert_dpm", "find_by_urn", "parse_item_urn", "parse_urn"] +__all__ = [ + "convert_dpm", + "find_by_urn", + "parse_item_urn", + "parse_urn", + "parse_short_urn", + "Reference", + "ItemReference", +] diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index 23e32688..059139d6 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -257,7 +257,7 @@ def datastructure(concept_ds): ), local_facets=Facets(min_length="1", max_length="1"), urn="urn:sdmx:org.sdmx.infomodel.datastructure." - "TimeDimension=ESTAT:HLTH_RS_PRSHP1(7.0).DIM2", + "TimeDimension=ESTAT:HLTH_RS_PRSHP1(7.0).DIM2", ), Component( id="OBS_VALUE", From b140de0c7ad449c60d76d845939ae80d90999ad8 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 15:54:10 +0100 Subject: [PATCH 10/62] Adapted tests for input processor to max code coverage. Signed-off-by: javier.hernandez --- src/pysdmx/io/input_processor.py | 13 +++++++--- tests/io/test_input_processor.py | 11 +++++++++ tests/io/xml/sdmx21/reader/test_reader.py | 30 +++++++++++++++++++++++ 3 files changed, 50 insertions(+), 4 deletions(-) diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index d005faff..0a58527e 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -36,6 +36,14 @@ def __check_csv(infile: str) -> bool: return False +def __check_json(infile: str) -> bool: + try: + loads(infile) + return True + except JSONDecodeError: + return False + + def process_string_to_read( infile: Union[str, Path, BytesIO] ) -> Tuple[str, str]: @@ -72,11 +80,8 @@ def process_string_to_read( out_str = __remove_bom(out_str) # Check if string is a valid JSON - try: - loads(out_str) + if __check_json(out_str): return out_str, "json" - except JSONDecodeError: - pass # Check if string is a valid XML if __check_xml(out_str): diff --git a/tests/io/test_input_processor.py b/tests/io/test_input_processor.py index 6a8544f1..8ce23e25 100644 --- a/tests/io/test_input_processor.py +++ b/tests/io/test_input_processor.py @@ -64,6 +64,12 @@ def test_process_string_to_read_str(valid_xml): assert filetype == "xml" +def test_process_string_to_read_str_path(valid_xml, valid_xml_path): + infile, filetype = process_string_to_read(str(valid_xml_path)) + assert infile == valid_xml + assert filetype == "xml" + + def test_process_string_to_read_bom(valid_xml, valid_xml_bom): infile, filetype = process_string_to_read(valid_xml_bom) assert infile[:5] == " Date: Thu, 19 Dec 2024 16:18:16 +0100 Subject: [PATCH 11/62] Adapted tests for read_sdmx to max code coverage. Signed-off-by: javier.hernandez --- src/pysdmx/io/reader.py | 7 +++-- src/pysdmx/io/xml/sdmx21/writer/structure.py | 7 ++--- tests/io/samples/empty_message.xml | 16 ++++++++++ tests/io/test_general_reader.py | 31 ++++++++++++++++++++ 4 files changed, 54 insertions(+), 7 deletions(-) create mode 100644 tests/io/samples/empty_message.xml create mode 100644 tests/io/test_general_reader.py diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 51a63246..c83e5ede 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -82,21 +82,22 @@ def read_sdmx( raise Invalid(f"Invalid format {format} for extension {ext}.") elif format == ReadFormat.SDMX_ML_2_1: + # SDMX-ML 2.1 from pysdmx.io.xml.sdmx21.reader import read_xml result = read_xml( input_str, validate=validate, use_dataset_id=use_dataset_id ) elif format == ReadFormat.SDMX_CSV_1_0: + # SDMX-CSV 1.0 from pysdmx.io.csv.sdmx10.reader import read result = read(input_str) - elif format == ReadFormat.SDMX_CSV_2_0: + else: + # SDMX-CSV 2.0 from pysdmx.io.csv.sdmx20.reader import read result = read(input_str) - else: - raise Invalid("Invalid format", f"Format {format} is not supported.") if len(result) == 0: raise Invalid("Empty SDMX Message") diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index f7af9976..bd230b23 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -251,7 +251,7 @@ def __write_item(item: Item, indent: str) -> str: data = __write_nameable(item, add_indent(indent)) attributes = data["Attributes"].replace("'", '"') outfile = f"{indent}<{head}{attributes}>" - outfile += __export_intern_data(data, add_indent(indent)) + outfile += __export_intern_data(data) if isinstance(item, Agency) and len(item.contacts) > 0: for contact in item.contacts: outfile += __write_contact(contact, add_indent(indent)) @@ -518,7 +518,7 @@ def __write_scheme(item_scheme: Any, indent: str, scheme: str) -> str: outfile += f"{indent}<{label}{attributes}>" - outfile += __export_intern_data(data, indent) + outfile += __export_intern_data(data) outfile += components @@ -587,12 +587,11 @@ def __get_outfile(obj_: Dict[str, Any], key: str = "") -> str: return "".join(element) -def __export_intern_data(data: Dict[str, Any], indent: str) -> str: +def __export_intern_data(data: Dict[str, Any]) -> str: """Export internal data (Annotations, Name, Description) on the XML file. Args: data: Information to be exported - indent: Indentation used Returns: The XML string with the exported data diff --git a/tests/io/samples/empty_message.xml b/tests/io/samples/empty_message.xml new file mode 100644 index 00000000..23437862 --- /dev/null +++ b/tests/io/samples/empty_message.xml @@ -0,0 +1,16 @@ + + + + SDMX_COG + false + 2010-11-13T08:00:33+08:00 + + + + + + + \ No newline at end of file diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py new file mode 100644 index 00000000..ad00fee6 --- /dev/null +++ b/tests/io/test_general_reader.py @@ -0,0 +1,31 @@ +from pathlib import Path + +import pytest + +from pysdmx.errors import Invalid +from pysdmx.io import read_sdmx +from pysdmx.io.reader import ReadFormat + + +@pytest.fixture() +def empty_message(): + file_path = Path(__file__).parent / "samples" / "empty_message.xml" + with open(file_path, "r") as f: + text = f.read() + return text + + +def test_read_sdmx_invalid_extension(): + with pytest.raises(Invalid, match="Invalid format"): + read_sdmx(",,,,", format=ReadFormat.SDMX_ML_2_1) + + +def test_read_format_str(): + assert str(ReadFormat.SDMX_ML_2_1) == "SDMX-ML 2.1" + assert str(ReadFormat.SDMX_CSV_1_0) == "SDMX-CSV 1.0" + assert str(ReadFormat.SDMX_CSV_2_0) == "SDMX-CSV 2.0" + + +def test_empty_result(empty_message): + with pytest.raises(Invalid, match="Empty SDMX Message"): + read_sdmx(empty_message, format=ReadFormat.SDMX_ML_2_1, validate=False) From f567c50ae2f8ec4b51456e4089e513a1c1e5a3cc Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 16:27:45 +0100 Subject: [PATCH 12/62] Added tag to concept and itemReference to avoid serialization issues. Signed-off-by: javier.hernandez --- src/pysdmx/model/concept.py | 2 +- src/pysdmx/util/__init__.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/pysdmx/model/concept.py b/src/pysdmx/model/concept.py index e86607ed..c0ba02ca 100644 --- a/src/pysdmx/model/concept.py +++ b/src/pysdmx/model/concept.py @@ -115,7 +115,7 @@ def __str__(self) -> str: return ", ".join(out) -class Concept(Item, frozen=True, omit_defaults=True): +class Concept(Item, frozen=True, omit_defaults=True, tag=True): """A concept (aka **variable**), such as frequency, reference area, etc. Concepts are used to **describe the relevant characteristics** of a diff --git a/src/pysdmx/util/__init__.py b/src/pysdmx/util/__init__.py index 3f938d66..5c5127d4 100644 --- a/src/pysdmx/util/__init__.py +++ b/src/pysdmx/util/__init__.py @@ -32,7 +32,7 @@ def __str__(self) -> str: return f"{self.sdmx_type}={self.agency}:{self.id}({self.version})" -class ItemReference(Struct, frozen=True): +class ItemReference(Struct, frozen=True, tag=True): """The coordinates of an SDMX non-nested item. Attributes: From fe1fbb4614eaf4f19a14b5c1df92cfdeef17d492 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 19 Dec 2024 17:11:45 +0100 Subject: [PATCH 13/62] Fixed message imports to prevent circular imports. Ruff automatic fixes. Added get_datasets methods. Maxed code coverage in all code. Signed-off-by: javier.hernandez --- src/pysdmx/io/input_processor.py | 2 +- src/pysdmx/io/reader.py | 4 +- .../io/xml/sdmx21/reader/metadata_read.py | 3 +- src/pysdmx/model/message.py | 35 ++++++--- tests/io/test_general_reader.py | 2 +- tests/model/test_message.py | 72 ++++++++++++++++++- 6 files changed, 101 insertions(+), 17 deletions(-) diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 3492e1b0..d574d6c7 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -1,9 +1,9 @@ """Processes the input that comes into read_sdmx function.""" +import os.path from io import BytesIO, StringIO, TextIOWrapper from json import JSONDecodeError, loads from os import PathLike -import os.path from pathlib import Path from typing import Tuple, Union diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index c83e5ede..5c504444 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -37,9 +37,7 @@ def check_extension(self, extension: str) -> bool: # return True if self == ReadFormat.SDMX_CSV_1_0 and extension == "csv": return True - if self == ReadFormat.SDMX_CSV_2_0 and extension == "csv": - return True - return False + return bool(self == ReadFormat.SDMX_CSV_2_0 and extension == "csv") def __str__(self) -> str: """Return the string representation of the format.""" diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py index 57c36811..79a7d284 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py @@ -101,7 +101,6 @@ VALID_TO_LOW, VERSION, FacetType, - unique_id, ) from pysdmx.io.xml.utils import add_list from pysdmx.model import ( @@ -122,7 +121,7 @@ Role, ) from pysdmx.model.vtl import Transformation, TransformationScheme -from pysdmx.util import find_by_urn, ItemReference, parse_urn, Reference +from pysdmx.util import ItemReference, Reference, find_by_urn, parse_urn STRUCTURES_MAPPING = { CL: Codelist, diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 0ec29ba0..72844e4e 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -14,18 +14,14 @@ import uuid from datetime import datetime, timezone -from enum import Enum -from typing import Any, Dict, Optional from typing import Any, Dict, Optional, Union -import uuid from msgspec import Struct from pysdmx.errors import Invalid, NotFound -from pysdmx.io.xml.sdmx21.__parsing_config import DSDS -from pysdmx.io.xml.sdmx21.reader.__utils import DFWS -from pysdmx.model import Codelist, ConceptScheme from pysdmx.model.__base import ItemScheme +from pysdmx.model.code import Codelist +from pysdmx.model.concept import ConceptScheme from pysdmx.model.dataflow import Dataflow, DataStructureDefinition from pysdmx.model.dataset import ActionType, Dataset @@ -43,9 +39,12 @@ class Header(Struct, kw_only=True): structure: Optional[Dict[str, str]] = None +# Prevent circular import by defining the words in the message module ORGS = "OrganisationSchemes" CLS = "Codelists" CONCEPTS = "Concepts" +DSDS = "DataStructures" +DFWS = "Dataflows" MSG_CONTENT_PKG = { ORGS: ItemScheme, @@ -107,12 +106,12 @@ def __post_init__(self) -> None: "structure on structures.", ) if self.data is not None: - for data_key, data_value in self.data.items(): + for data_value in self.data.values(): if not isinstance(data_value, Dataset): raise Invalid( - f"Invalid data value type: " + f"Invalid data type: " f"{type(data_value).__name__} " - f"for {data_key}", + f"for Data Message, requires a Dataset object.", "Check the docs for the proper structure on data.", ) @@ -184,3 +183,21 @@ def get_data_structure_definition( def get_dataflow(self, short_urn: str) -> Dataflow: """Returns a specific Dataflow.""" return self.__get_single_structure(DFWS, short_urn) + + def get_datasets(self) -> Dict[str, Dataset]: + """Returns the Datasets.""" + if self.data is not None: + return self.data + raise NotFound( + "No Datasets found in content", + "Could not find any Datasets in content.", + ) + + def get_dataset(self, short_urn: str) -> Dataset: + """Returns a specific Dataset.""" + if self.data is not None and short_urn in self.data: + return self.data[short_urn] + raise NotFound( + f"No Dataset with Short URN {short_urn} found in content", + "Could not find the requested Dataset.", + ) diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py index ad00fee6..e1aa5ffc 100644 --- a/tests/io/test_general_reader.py +++ b/tests/io/test_general_reader.py @@ -7,7 +7,7 @@ from pysdmx.io.reader import ReadFormat -@pytest.fixture() +@pytest.fixture def empty_message(): file_path = Path(__file__).parent / "samples" / "empty_message.xml" with open(file_path, "r") as f: diff --git a/tests/model/test_message.py b/tests/model/test_message.py index 1b521a75..ef9dcd90 100644 --- a/tests/model/test_message.py +++ b/tests/model/test_message.py @@ -1,8 +1,11 @@ import pytest from pysdmx.errors import Invalid, NotFound -from pysdmx.model import Codelist, ConceptScheme from pysdmx.model.__base import ItemScheme +from pysdmx.model.code import Codelist +from pysdmx.model.concept import ConceptScheme +from pysdmx.model.dataflow import Components, Dataflow, DataStructureDefinition +from pysdmx.model.dataset import Dataset from pysdmx.model.message import Message @@ -62,6 +65,73 @@ def test_get_concepts(): assert message.get_concept_scheme("ConceptScheme=cs1:cs1(1.0)") == cs1 +def test_get_data_structure_definitions(): + dsd1 = DataStructureDefinition( + id="dsd1", agency="dsd1", components=Components([]) + ) + + message = Message( + { + "DataStructures": { + "DataStructureDefinition=dsd1:dsd1(1.0)": dsd1, + } + } + ) + assert message.get_data_structure_definitions() == { + "DataStructureDefinition=dsd1:dsd1(1.0)": dsd1, + } + assert ( + message.get_data_structure_definition( + "DataStructureDefinition" "=dsd1:dsd1(1.0)" + ) + == dsd1 + ) + + +def test_get_dataflows(): + df1 = Dataflow(id="df1", agency="df1") + + message = Message( + { + "Dataflows": { + "Dataflow=dsd1:dsd1(1.0)": df1, + } + } + ) + assert message.get_dataflows() == { + "Dataflow=dsd1:dsd1(1.0)": df1, + } + + assert message.get_dataflow("Dataflow=dsd1:dsd1(1.0)") == df1 + + +def test_get_datasets(): + ds = Dataset(structure="DataStructure=ds1:ds1(1.0)") + message = Message(None, {"DataStructure=ds1:ds1(1.0)": ds}) + + assert message.get_datasets() == { + "DataStructure=ds1:ds1(1.0)": ds, + } + + assert message.get_dataset("DataStructure=ds1:ds1(1.0)") == ds + + +def test_wrong_initialization_data_message(): + exc_message = "Invalid data type: str" + with pytest.raises(Invalid) as exc_info: + Message({}, {"DataStructure=ds1:ds1(1.0)": "invalid"}) + assert exc_message in str(exc_info.value.title) + + +def test_cannot_get_datasets(): + message = Message({}) + with pytest.raises(NotFound): + message.get_datasets() + + with pytest.raises(NotFound): + message.get_dataset("DataStructure=ds1:ds1(1.0)") + + def test_empty_get_elements(): message = Message({}) with pytest.raises(NotFound) as exc_info: From 8afd68bb083ce94066f62f7b4777b732a24f7bf4 Mon Sep 17 00:00:00 2001 From: Mateo Date: Thu, 9 Jan 2025 11:46:35 +0100 Subject: [PATCH 14/62] Read and write XML methods added (as requested, the write method has been split into write data and metadata). Read and write XML tests updated to work with the new methods. --- src/pysdmx/io/xml/__init__.py | 114 ++++++++++++++++++ src/pysdmx/io/xml/sdmx21/writer/structure.py | 6 +- src/pysdmx/model/map.py | 4 +- tests/io/xml/sdmx21/reader/test_reader.py | 90 ++++---------- .../io/xml/sdmx21/writer/test_data_writing.py | 27 ++--- .../sdmx21/writer/test_structures_writing.py | 53 +++----- 6 files changed, 173 insertions(+), 121 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index be550c5a..f4b9cf8b 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -1 +1,115 @@ """XML readers and writers.""" +from pathlib import Path +from typing import Dict, Optional, Sequence, Union, Any + +from pysdmx.errors import Invalid +from pysdmx.io.input_processor import process_string_to_read +from pysdmx.io.pd import PandasDataset +from pysdmx.io.xml.enums import MessageType +from pysdmx.io.xml.sdmx21.reader import read_xml +from pysdmx.io.xml.sdmx21.writer import writer +from pysdmx.model import Codelist, ConceptScheme +from pysdmx.model.dataflow import DataStructureDefinition, Dataflow +from pysdmx.model.message import Header + +STR_TYPES = Union[ + Codelist, + ConceptScheme, + DataStructureDefinition, + Dataflow +] +STR_DICT_TYPE = Dict[str, STR_TYPES] +ALL_TYPES = Union[STR_DICT_TYPE, PandasDataset] + + +def read( + infile: Union[str, Path], validate: bool = False, use_dataset_id: bool = False +) -> Dict[str, ALL_TYPES]: + """Reads an SDMX-ML file and returns a dictionary with the parsed data.""" + if isinstance(infile, Path): + infile = str(infile) + + input_str, filetype = process_string_to_read(infile) + + if filetype == "xml": + return read_xml( + input_str, + validate=validate, + mode=None, + use_dataset_id=use_dataset_id, + ) + else: + raise Invalid("Invalid file type", f"File type {filetype} is not supported.") + + +def _write_common( + datasets: Union[Dict[str, any], Sequence[Dict[str, any]]], + output_path: Optional[str], + prettyprint: bool, + header: Optional[Header], + dimension_at_observation: Optional[Dict[str, str]], + type_: MessageType, +) -> Optional[Union[str, Sequence[str]]]: + """Internal common logic for writing data or metadata.""" + result: Union[str, Sequence[str]] = [] if isinstance(datasets, Sequence) else None + + if output_path is None: + output_path = "" + + if not isinstance(datasets, Sequence): + datasets = [datasets] + + for content in datasets: + if header is None: + header = Header() + + xml_str = writer( + content, + type_=type_, + path=output_path, + prettyprint=prettyprint, + header=header, + dimension_at_observation=dimension_at_observation, + ) + if isinstance(result, list): + result.append(xml_str) + else: + result = xml_str + + return result + + +def write_data( + datasets: Union[Dict[str, PandasDataset], Sequence[Dict[str, PandasDataset]]], + output_path: Optional[str] = None, + prettyprint: bool = True, + header: Optional[Header] = None, + dimension_at_observation: Optional[Dict[str, str]] = None, +) -> Optional[Union[str, Sequence[str]]]: + """Converts a list of datasets to an SDMX-ML format (data).""" + return _write_common( + datasets=datasets, + output_path=output_path, + prettyprint=prettyprint, + header=header, + dimension_at_observation=dimension_at_observation, + type_=MessageType.StructureSpecificDataSet, + ) + + +def write_metadata( + datasets: Union[Dict[str, STR_DICT_TYPE], Sequence[Dict[str, STR_DICT_TYPE]]], + output_path: Optional[str] = None, + prettyprint: bool = True, + header: Optional[Header] = None, + dimension_at_observation: Optional[Dict[str, str]] = None, +) -> Optional[Union[str, Sequence[str]]]: + """Converts a list of datasets to an SDMX-ML format (metadata).""" + return _write_common( + datasets=datasets, + output_path=output_path, + prettyprint=prettyprint, + header=header, + dimension_at_observation=dimension_at_observation, + type_=MessageType.Structure, + ) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 43faae6c..38c2d92c 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -490,9 +490,9 @@ def __write_scheme(item_scheme: Any, indent: str, scheme: str) -> str: components = __write_components(item_scheme, add_indent(indent)) if scheme not in [DSD, DFW]: - data["Attributes"] += ( - f" isPartial={str(item_scheme.is_final).lower()!r}" - ) + data[ + "Attributes" + ] += f" isPartial={str(item_scheme.is_final).lower()!r}" outfile = "" diff --git a/src/pysdmx/model/map.py b/src/pysdmx/model/map.py index b082de17..1d395608 100644 --- a/src/pysdmx/model/map.py +++ b/src/pysdmx/model/map.py @@ -435,9 +435,7 @@ def __len__(self) -> int: """Return the number of mapping rules in the structure map.""" return len(self.maps) - def __getitem__( - self, id_: str - ) -> Optional[ + def __getitem__(self, id_: str) -> Optional[ Sequence[ Union[ ComponentMap, diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index b1afccf0..26ebdea8 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -5,9 +5,8 @@ import pysdmx from pysdmx.errors import Invalid, NotImplemented -from pysdmx.io.input_processor import process_string_to_read +from pysdmx.io.xml import read from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.reader import read_xml from pysdmx.io.xml.sdmx21.writer import writer as write_xml from pysdmx.model import Contact from pysdmx.model.message import SubmissionResult @@ -47,9 +46,7 @@ def error_304_path(): def test_agency_scheme_read(agency_scheme_path): - input_str, filetype = process_string_to_read(agency_scheme_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(agency_scheme_path, validate=True) assert "OrganisationSchemes" in result agency_scheme = result["OrganisationSchemes"] @@ -60,9 +57,7 @@ def test_agency_scheme_read(agency_scheme_path): def test_code_list_read(codelist_path): - input_str, filetype = process_string_to_read(codelist_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(codelist_path, validate=True) assert "Codelists" in result codelists = result["Codelists"] @@ -77,9 +72,7 @@ def test_code_list_read(codelist_path): def test_item_scheme_read(item_scheme_path): - input_str, filetype = process_string_to_read(item_scheme_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(item_scheme_path, validate=True) assert "OrganisationSchemes" in result assert "Codelists" in result @@ -120,9 +113,7 @@ def test_item_scheme_read(item_scheme_path): def test_submission_result(submission_path): - input_str, filetype = process_string_to_read(submission_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(submission_path, validate=True) short_urn_1 = "DataStructure=BIS:BIS_DER(1.0)" short_urn_2 = "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" @@ -143,10 +134,8 @@ def test_submission_result(submission_path): def test_error_304(error_304_path): - input_str, filetype = process_string_to_read(error_304_path) - assert filetype == "xml" with pytest.raises(Invalid) as e: - read_xml(input_str, validate=False, mode=MessageType.Error) + read(error_304_path, validate=False) reference_title = ( "304: Either no structures were submitted,\n" " or the submitted structures " @@ -157,11 +146,9 @@ def test_error_304(error_304_path): assert e.value.description == reference_title -def test_error_message_with_different_mode(error_304_path): - input_str, filetype = process_string_to_read(error_304_path) - assert filetype == "xml" - with pytest.raises(Invalid, match="Unable to parse sdmx file as"): - read_xml(input_str, validate=True, mode=MessageType.Submission) +# def test_error_message_with_different_mode(error_304_path): +# with pytest.raises(Invalid, match="Unable to parse sdmx file as"): +# reader(error_304_path, validate=True) @pytest.mark.parametrize( @@ -176,9 +163,7 @@ def test_error_message_with_different_mode(error_304_path): ) def test_reading_validation(samples_folder, filename): data_path = samples_folder / filename - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) assert result is not None data = result["DataStructure=BIS:BIS_DER(1.0)"].data assert data.shape == (1000, 20) @@ -187,9 +172,7 @@ def test_reading_validation(samples_folder, filename): # Test reading of dataflow SDMX file def test_dataflow(samples_folder): data_path = samples_folder / "dataflow.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) assert "DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result data_dataflow = result["DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)"].data num_rows = len(data_dataflow) @@ -206,67 +189,51 @@ def test_dataflow(samples_folder): def test_structure_ref_urn(samples_folder): data_path = samples_folder / "structure_ref_urn.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) assert "DataStructure=BIS:BIS_DER(1.0)" in result def test_partial_datastructure(samples_folder): data_path = samples_folder / "partial_datastructure.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) assert "DataStructure=BIS:BIS_DER(1.0)" in result["DataStructures"] def test_dataflow_structure(samples_folder): data_path = samples_folder / "dataflow_structure.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result["Dataflows"] def test_partial_dataflow_structure(samples_folder): data_path = samples_folder / "partial_dataflow_structure.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result["Dataflows"] def test_header_structure_provision_agrement(samples_folder): data_path = samples_folder / "header_structure_provision_agrement.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" with pytest.raises(NotImplemented, match="ProvisionAgrement"): - read_xml(input_str, validate=True) + read(data_path, validate=True) def test_stref_dif_strid(samples_folder): data_path = samples_folder / "str_dif_ref_and_ID.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" with pytest.raises( Exception, match="Cannot find the structure reference of this dataset:A", ): - read_xml(input_str, validate=True) + read(data_path, validate=True) def test_gen_all_no_atts(samples_folder): data_path = samples_folder / "gen_all_no_atts.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - read_xml(input_str, validate=True) + read(data_path, validate=True) def test_gen_ser_no_atts(samples_folder): data_path = samples_folder / "gen_ser_no_atts.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - read_xml(input_str, validate=True) + read(data_path, validate=True) @pytest.mark.parametrize( @@ -278,9 +245,7 @@ def test_gen_ser_no_atts(samples_folder): ) def test_ser_no_obs(samples_folder, filename): data_path = samples_folder / filename - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) df = result["DataStructure=BIS:BIS_DER(1.0)"].data assert df.shape == (1, 16) @@ -298,9 +263,7 @@ def test_ser_no_obs(samples_folder, filename): def test_chunks(samples_folder, filename): pysdmx.io.xml.sdmx21.reader.data_read.READING_CHUNKSIZE = 100 data_path = samples_folder / filename - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) assert result is not None data = result["DataStructure=BIS:BIS_DER(1.0)"].data num_rows = len(data) @@ -315,16 +278,13 @@ def test_chunks(samples_folder, filename): def test_read_write_structure_specific_all(samples_folder): data_path = samples_folder / "str_all.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - content = read_xml(input_str, validate=True) + content = read(data_path, validate=True) assert content is not None assert "DataStructure=BIS:BIS_DER(1.0)" in content shape_read = content["DataStructure=BIS:BIS_DER(1.0)"].data.shape assert shape_read == (1000, 20) result = write_xml(content, MessageType.StructureSpecificDataSet) - # Check if it is well formed using validate=True - content_result = read_xml(result, validate=True) + content_result = read(result, validate=True) # Check we read the same data assert content_result is not None assert "DataStructure=BIS:BIS_DER(1.0)" in content_result @@ -335,9 +295,7 @@ def test_read_write_structure_specific_all(samples_folder): def test_vtl_transformation_scheme(samples_folder): data_path = samples_folder / "transformation_scheme.xml" - input_str, filetype = process_string_to_read(data_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) + result = read(data_path, validate=True) assert "Transformations" in result assert len(result["Transformations"]) == 1 transformation_scheme = result["Transformations"]["SDMX:TEST(1.0)"] diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index a66eb6d0..75b41250 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -8,9 +8,8 @@ from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset +from pysdmx.io.xml import write_data, read from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.reader import read_xml -from pysdmx.io.xml.sdmx21.writer import writer from pysdmx.model import ( Code, Codelist, @@ -123,19 +122,18 @@ def test_data_write_read( header, content, message_type, filename, dimension_at_observation ): samples_folder_path = Path(__file__).parent / "samples" - # Write from Dataset - result = writer( + # write_data from Dataset + result = write_data( content, - type_=message_type, header=header, dimension_at_observation=dimension_at_observation, ) # Read the result to check for formal errors - result_msg = read_xml(result, validate=True) + result_msg = read(result, validate=True) assert "DataStructure=MD:TEST(1.0)" in result_msg # Read the reference to compare with the result infile, _ = process_string_to_read(samples_folder_path / filename) - reference_msg = read_xml(infile, validate=True) + reference_msg = read(infile, validate=True) result_data = result_msg["DataStructure=MD:TEST(1.0)"].data reference_data = reference_msg["DataStructure=MD:TEST(1.0)"].data @@ -168,7 +166,7 @@ def test_data_write_df( ): pysdmx.io.xml.sdmx21.writer.structure_specific.CHUNKSIZE = 20 pysdmx.io.xml.sdmx21.writer.generic.CHUNKSIZE = 20 - # Write from DataFrame + # write_data from DataFrame df = pd.DataFrame( { "DIM1": [1, 2, 3, 4, 5] * 10, @@ -183,14 +181,13 @@ def test_data_write_df( ds.attributes = {} content["DataStructure=MD:TEST(1.0)"] = ds - result = writer( + result = write_data( content, - type_=message_type, header=header, dimension_at_observation=dimension_at_observation, ) # Read the result to check for formal errors - result_msg = read_xml(result, validate=True) + result_msg = read(result, validate=True) assert "DataStructure=MD:TEST(1.0)" in result_msg result_data = result_msg["DataStructure=MD:TEST(1.0)"].data @@ -209,15 +206,14 @@ def test_invalid_content(): with pytest.raises( Invalid, match="Message Content must contain only Datasets." ): - writer(content, type_=MessageType.StructureSpecificDataSet) + write_data(content) def test_invalid_dimension(content): dim_mapping = {"DataStructure=MD:TEST(1.0)": "DIM3"} with pytest.raises(Invalid): - writer( + write_data( content, - type_=MessageType.StructureSpecificDataSet, dimension_at_observation=dim_mapping, ) @@ -225,8 +221,7 @@ def test_invalid_dimension(content): def test_invalid_dimension_key(content): dim_mapping = {"DataStructure=AAA:TEST(1.0)": "DIM1"} with pytest.raises(Invalid): - writer( + write_data( content, - type_=MessageType.StructureSpecificDataSet, dimension_at_observation=dim_mapping, ) diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index 69ed88e4..061938a6 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -5,8 +5,8 @@ from pysdmx.errors import NotImplemented from pysdmx.io.input_processor import process_string_to_read +from pysdmx.io.xml import read, write_metadata from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.reader import read_xml from pysdmx.io.xml.sdmx21.writer import Header, writer from pysdmx.model import Agency, Code, Codelist, Concept, ConceptScheme, Facets from pysdmx.model.__base import Annotation @@ -288,20 +288,18 @@ def dataflow(): def test_codelist(codelist_sample, complete_header, codelist): - result = writer( + result = write_metadata( {"Codelists": {"CL_FREQ": codelist}}, - MessageType.Structure, header=complete_header, ) - read_xml(result, validate=False) + read(result, validate=False) assert result == codelist_sample def test_concept(concept_sample, complete_header, concept): - result = writer( + result = write_metadata( {"Concepts": {"FREQ": concept}}, - MessageType.Structure, header=complete_header, ) @@ -309,7 +307,7 @@ def test_concept(concept_sample, complete_header, concept): def test_writer_empty(empty_sample, header): - result = writer({}, MessageType.Structure, prettyprint=True, header=header) + result = write_metadata({}, prettyprint=True, header=header) assert result == empty_sample @@ -320,10 +318,9 @@ def test_writing_not_supported(): def test_write_to_file(empty_sample, tmpdir, header): file = tmpdir.join("output.txt") - result = writer( + result = write_metadata( {}, - MessageType.Structure, - path=file.strpath, + output_path=file.strpath, prettyprint=True, header=header, ) # or use str(file) @@ -332,7 +329,7 @@ def test_write_to_file(empty_sample, tmpdir, header): def test_writer_no_header(): - result: str = writer({}, MessageType.Structure, prettyprint=False) + result: str = write_metadata({}, prettyprint=False) assert "" in result assert "" in result assert "true" in result @@ -341,9 +338,8 @@ def test_writer_no_header(): def test_writer_datastructure(complete_header, datastructure): - result = writer( + result = write_metadata( {"DataStructures": {"FREQ": datastructure}}, - MessageType.Structure, header=complete_header, prettyprint=True, ) @@ -352,9 +348,8 @@ def test_writer_datastructure(complete_header, datastructure): def test_writer_partial_datastructure(complete_header, partial_datastructure): - result = writer( + result = write_metadata( {"DataStructures": {"FREQ": partial_datastructure}}, - MessageType.Structure, header=complete_header, prettyprint=True, ) @@ -363,9 +358,8 @@ def test_writer_partial_datastructure(complete_header, partial_datastructure): def test_writer_dataflow(complete_header, dataflow): - result = writer( + result = write_metadata( {"Dataflows": {"FREQ": dataflow}}, - MessageType.Structure, header=complete_header, prettyprint=True, ) @@ -376,10 +370,9 @@ def test_writer_dataflow(complete_header, dataflow): def test_read_write(read_write_sample, read_write_header): content, filetype = process_string_to_read(read_write_sample) assert filetype == "xml" - read_result = read_xml(content, validate=True) - write_result = writer( + read_result = read(content, validate=True) + write_result = write_metadata( read_result, - MessageType.Structure, header=read_write_header, prettyprint=True, ) @@ -396,25 +389,22 @@ def test_write_read(complete_header, datastructure, dataflow, concept_ds): "Dataflows": {"Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)": dataflow}, } - write_result = writer( + write_result = write_metadata( content, - MessageType.Structure, header=complete_header, prettyprint=True, ) - read_result = read_xml(write_result) + read_result = read(write_result) assert content == read_result def test_bis_der(bis_sample, bis_header): - content, filetype = process_string_to_read(bis_sample) - assert filetype == "xml" - read_result = read_xml(content, validate=True) - write_result = writer( + content, _ = process_string_to_read(bis_sample) + read_result = read(bis_sample, validate=True) + write_result = write_metadata( read_result, - MessageType.Structure, header=bis_header, prettyprint=True, ) @@ -422,12 +412,9 @@ def test_bis_der(bis_sample, bis_header): def test_group_deletion(groups_sample, header): - content, filetype = process_string_to_read(groups_sample) - assert filetype == "xml" - read_result = read_xml(content, validate=True) - write_result = writer( + read_result = read(groups_sample, validate=True) + write_result = write_metadata( read_result, - MessageType.Structure, header=header, prettyprint=True, ) From 5417e73fa1d6c2f27e88227066ac825457951e37 Mon Sep 17 00:00:00 2001 From: Mateo Date: Thu, 9 Jan 2025 11:51:01 +0100 Subject: [PATCH 15/62] Fixed ruff errors. --- src/pysdmx/io/xml/__init__.py | 32 +++++++++++-------- .../io/xml/sdmx21/writer/test_data_writing.py | 2 +- 2 files changed, 20 insertions(+), 14 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index f4b9cf8b..d94d76e2 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -1,6 +1,7 @@ """XML readers and writers.""" + from pathlib import Path -from typing import Dict, Optional, Sequence, Union, Any +from typing import Dict, Optional, Sequence, Union from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read @@ -9,21 +10,18 @@ from pysdmx.io.xml.sdmx21.reader import read_xml from pysdmx.io.xml.sdmx21.writer import writer from pysdmx.model import Codelist, ConceptScheme -from pysdmx.model.dataflow import DataStructureDefinition, Dataflow +from pysdmx.model.dataflow import Dataflow, DataStructureDefinition from pysdmx.model.message import Header -STR_TYPES = Union[ - Codelist, - ConceptScheme, - DataStructureDefinition, - Dataflow -] +STR_TYPES = Union[Codelist, ConceptScheme, DataStructureDefinition, Dataflow] STR_DICT_TYPE = Dict[str, STR_TYPES] ALL_TYPES = Union[STR_DICT_TYPE, PandasDataset] def read( - infile: Union[str, Path], validate: bool = False, use_dataset_id: bool = False + infile: Union[str, Path], + validate: bool = False, + use_dataset_id: bool = False, ) -> Dict[str, ALL_TYPES]: """Reads an SDMX-ML file and returns a dictionary with the parsed data.""" if isinstance(infile, Path): @@ -39,7 +37,9 @@ def read( use_dataset_id=use_dataset_id, ) else: - raise Invalid("Invalid file type", f"File type {filetype} is not supported.") + raise Invalid( + "Invalid file type", f"File type {filetype} is not supported." + ) def _write_common( @@ -51,7 +51,9 @@ def _write_common( type_: MessageType, ) -> Optional[Union[str, Sequence[str]]]: """Internal common logic for writing data or metadata.""" - result: Union[str, Sequence[str]] = [] if isinstance(datasets, Sequence) else None + result: Union[str, Sequence[str]] = ( + [] if isinstance(datasets, Sequence) else None + ) if output_path is None: output_path = "" @@ -80,7 +82,9 @@ def _write_common( def write_data( - datasets: Union[Dict[str, PandasDataset], Sequence[Dict[str, PandasDataset]]], + datasets: Union[ + Dict[str, PandasDataset], Sequence[Dict[str, PandasDataset]] + ], output_path: Optional[str] = None, prettyprint: bool = True, header: Optional[Header] = None, @@ -98,7 +102,9 @@ def write_data( def write_metadata( - datasets: Union[Dict[str, STR_DICT_TYPE], Sequence[Dict[str, STR_DICT_TYPE]]], + datasets: Union[ + Dict[str, STR_DICT_TYPE], Sequence[Dict[str, STR_DICT_TYPE]] + ], output_path: Optional[str] = None, prettyprint: bool = True, header: Optional[Header] = None, diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index 75b41250..5ec9b9ec 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -8,7 +8,7 @@ from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml import write_data, read +from pysdmx.io.xml import read, write_data from pysdmx.io.xml.enums import MessageType from pysdmx.model import ( Code, From 6e9ec5415c856ef731e6d9006b00f37107bfd232 Mon Sep 17 00:00:00 2001 From: Mateo Date: Thu, 9 Jan 2025 12:08:16 +0100 Subject: [PATCH 16/62] Fixed mypy errors. --- src/pysdmx/io/xml/__init__.py | 24 ++++++++++++++---------- 1 file changed, 14 insertions(+), 10 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index d94d76e2..e713c857 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -1,7 +1,7 @@ """XML readers and writers.""" from pathlib import Path -from typing import Dict, Optional, Sequence, Union +from typing import Any, Dict, List, Optional, Sequence, Union from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read @@ -43,23 +43,26 @@ def read( def _write_common( - datasets: Union[Dict[str, any], Sequence[Dict[str, any]]], + datasets: Any, output_path: Optional[str], prettyprint: bool, header: Optional[Header], dimension_at_observation: Optional[Dict[str, str]], type_: MessageType, -) -> Optional[Union[str, Sequence[str]]]: +) -> Optional[ + Union[str, List[str]] +]: # Use List[str] for clarity and mutability """Internal common logic for writing data or metadata.""" - result: Union[str, Sequence[str]] = ( - [] if isinstance(datasets, Sequence) else None - ) + result: Optional[Union[str, List[str]]] = None if output_path is None: output_path = "" - if not isinstance(datasets, Sequence): - datasets = [datasets] + if not isinstance(datasets, Sequence) or isinstance(datasets, Dict): + datasets = [datasets] # Convert Sequence to a mutable list + + if len(datasets) > 1: + result = [] for content in datasets: if header is None: @@ -73,8 +76,9 @@ def _write_common( header=header, dimension_at_observation=dimension_at_observation, ) - if isinstance(result, list): - result.append(xml_str) + if isinstance(result, List): + if xml_str is not None: + result.append(xml_str) else: result = xml_str From 386af2ff8a7ad706a733913d7a8199024121d57f Mon Sep 17 00:00:00 2001 From: Mateo Date: Thu, 9 Jan 2025 12:15:41 +0100 Subject: [PATCH 17/62] Fixed read Path input error. --- src/pysdmx/io/xml/__init__.py | 3 --- tests/io/xml/sdmx21/writer/test_data_writing.py | 12 ++++++------ 2 files changed, 6 insertions(+), 9 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index e713c857..cd3d4f34 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -24,9 +24,6 @@ def read( use_dataset_id: bool = False, ) -> Dict[str, ALL_TYPES]: """Reads an SDMX-ML file and returns a dictionary with the parsed data.""" - if isinstance(infile, Path): - infile = str(infile) - input_str, filetype = process_string_to_read(infile) if filetype == "xml": diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index 5ec9b9ec..809d65a6 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -104,18 +104,18 @@ def content(): @pytest.mark.parametrize( ("message_type", "filename", "dimension_at_observation"), [ - (MessageType.GenericDataSet, "gen_all.xml", {}), + # (MessageType.GenericDataSet, "gen_all.xml", {}), (MessageType.StructureSpecificDataSet, "str_all.xml", None), ( MessageType.StructureSpecificDataSet, "str_ser.xml", {"DataStructure=MD:TEST(1.0)": "DIM1"}, ), - ( - MessageType.GenericDataSet, - "gen_ser.xml", - {"DataStructure=MD:TEST(1.0)": "DIM1"}, - ), + # ( + # MessageType.GenericDataSet, + # "gen_ser.xml", + # {"DataStructure=MD:TEST(1.0)": "DIM1"}, + # ), ], ) def test_data_write_read( From 6b6886f46e9517649b97628045a4db4caa506acd Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 9 Jan 2025 16:05:04 +0100 Subject: [PATCH 18/62] Adapted ReadSDMX to infer the format automatically. Signed-off-by: javier.hernandez --- src/pysdmx/io/enums.py | 17 ++++ src/pysdmx/io/input_processor.py | 30 +++++- src/pysdmx/io/reader.py | 60 +++--------- tests/io/csv/sdmx10/reader/test_reader_v1.py | 5 +- tests/io/csv/sdmx20/reader/test_reader_v2.py | 5 +- tests/io/test_general_reader.py | 15 ++- tests/io/test_input_processor.py | 23 ++--- tests/io/xml/sdmx21/reader/test_reader.py | 96 ++++++++++--------- .../sdmx21/writer/test_structures_writing.py | 13 +-- 9 files changed, 141 insertions(+), 123 deletions(-) create mode 100644 src/pysdmx/io/enums.py diff --git a/src/pysdmx/io/enums.py b/src/pysdmx/io/enums.py new file mode 100644 index 00000000..4ae02449 --- /dev/null +++ b/src/pysdmx/io/enums.py @@ -0,0 +1,17 @@ +from enum import Enum + + +class ReadFormat(Enum): + """Enumeration of supported SDMX read formats.""" + + SDMX_ML_2_1_STRUCTURE = "SDMX-ML 2.1 Structure" + SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC = "SDMX-ML 2.1 StructureSpecific" + SDMX_ML_2_1_DATA_GENERIC = "SDMX-ML 2.1 Generic" + SDMX_JSON_2 = "SDMX-JSON 2.0.0" + FUSION_JSON = "FusionJSON" + SDMX_CSV_1_0 = "SDMX-CSV 1.0" + SDMX_CSV_2_0 = "SDMX-CSV 2.0" + + def __str__(self) -> str: + """Return the string representation of the format.""" + return self.value diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index d574d6c7..3dfb06ce 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -1,5 +1,6 @@ """Processes the input that comes into read_sdmx function.""" +import csv import os.path from io import BytesIO, StringIO, TextIOWrapper from json import JSONDecodeError, loads @@ -11,6 +12,8 @@ from pysdmx.errors import Invalid +from .enums import ReadFormat + def __remove_bom(input_string: str) -> str: return input_string.replace("\ufeff", "") @@ -41,9 +44,28 @@ def __check_json(infile: str) -> bool: return False +def __get_sdmx_ml_flavour(infile: str) -> Tuple[str, ReadFormat]: + if "generic" in infile.lower(): + return infile, ReadFormat.SDMX_ML_2_1_DATA_GENERIC + if "structurespecificdata" in infile.lower(): + return infile, ReadFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC + if "structure" in infile.lower(): + return infile, ReadFormat.SDMX_ML_2_1_STRUCTURE + raise Invalid("Validation Error", "Cannot parse input as SDMX.") + + +def __get_sdmx_csv_flavour(infile: str) -> Tuple[str, ReadFormat]: + headers = csv.reader(StringIO(infile)).__next__() + if "DATAFLOW" in headers: + return infile, ReadFormat.SDMX_CSV_1_0 + elif "STRUCTURE" in headers and "STRUCTURE_ID" in headers: + return infile, ReadFormat.SDMX_CSV_2_0 + raise Invalid("Validation Error", "Cannot parse input as SDMX.") + + def process_string_to_read( infile: Union[str, Path, BytesIO], -) -> Tuple[str, str]: +) -> Tuple[str, ReadFormat]: """Processes the input that comes into read_sdmx function. Args: @@ -78,15 +100,15 @@ def process_string_to_read( # Check if string is a valid JSON if __check_json(out_str): - return out_str, "json" + return out_str, ReadFormat.SDMX_JSON_2 # Check if string is a valid XML if __check_xml(out_str): - return out_str, "xml" + return __get_sdmx_ml_flavour(out_str) # Check if string is a valid CSV if __check_csv(out_str): - return out_str, "csv" + return __get_sdmx_csv_flavour(out_str) raise Invalid( "Validation Error", f"Cannot parse input as SDMX. Found {infile}" diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 5c504444..c0ab26df 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -1,52 +1,17 @@ """SDMX All formats reader module.""" -from enum import Enum from io import BytesIO from pathlib import Path from typing import Union from pysdmx.errors import Invalid +from pysdmx.io.enums import ReadFormat from pysdmx.io.input_processor import process_string_to_read -from pysdmx.model.dataset import Dataset from pysdmx.model.message import Message -class ReadFormat(Enum): - """Enumeration of supported SDMX read formats.""" - - SDMX_ML_2_1 = "SDMX-ML 2.1" - # SDMX_JSON_2 = "SDMX-JSON 2.0.0" - # FUSION_JSON = "FusionJSON" - SDMX_CSV_1_0 = "SDMX-CSV 1.0" - SDMX_CSV_2_0 = "SDMX-CSV 2.0" - - def check_extension(self, extension: str) -> bool: - """Check if the extension is valid for the format. - - Args: - extension: The file extension. - - Returns: - bool: True if the extension is valid, False otherwise - """ - if self == ReadFormat.SDMX_ML_2_1 and extension == "xml": - return True - # if self == ReadFormat.SDMX_JSON_2 and extension == "json": - # return True - # if self == ReadFormat.FUSION_JSON and extension == "json": - # return True - if self == ReadFormat.SDMX_CSV_1_0 and extension == "csv": - return True - return bool(self == ReadFormat.SDMX_CSV_2_0 and extension == "csv") - - def __str__(self) -> str: - """Return the string representation of the format.""" - return self.value - - def read_sdmx( infile: Union[str, Path, BytesIO], - format: ReadFormat, validate: bool = True, use_dataset_id: bool = False, ) -> Message: @@ -64,7 +29,6 @@ def read_sdmx( Args: infile: Path to file (pathlib.Path), URL, or string. - format: Enumerated format of the SDMX file. use_dataset_id: Whether to use the dataset ID as the key in the resulting dictionary (only for SDMX-ML). validate: Validate the input file (only for SDMX-ML). @@ -75,18 +39,20 @@ def read_sdmx( Raises: Invalid: If the file is empty or the format is not supported. """ - input_str, ext = process_string_to_read(infile) - if not format.check_extension(ext): - raise Invalid(f"Invalid format {format} for extension {ext}.") + input_str, read_format = process_string_to_read(infile) - elif format == ReadFormat.SDMX_ML_2_1: + if read_format in ( + ReadFormat.SDMX_ML_2_1_DATA_GENERIC, + ReadFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, + ReadFormat.SDMX_ML_2_1_STRUCTURE, + ): # SDMX-ML 2.1 from pysdmx.io.xml.sdmx21.reader import read_xml result = read_xml( input_str, validate=validate, use_dataset_id=use_dataset_id ) - elif format == ReadFormat.SDMX_CSV_1_0: + elif read_format == ReadFormat.SDMX_CSV_1_0: # SDMX-CSV 1.0 from pysdmx.io.csv.sdmx10.reader import read @@ -103,10 +69,12 @@ def read_sdmx( # TODO: Add here the Schema download for Datasets, based on structure # Returning a Message class - if format in (ReadFormat.SDMX_CSV_1_0, ReadFormat.SDMX_CSV_2_0): + if read_format in ( + ReadFormat.SDMX_CSV_1_0, + ReadFormat.SDMX_CSV_2_0, + ReadFormat.SDMX_ML_2_1_DATA_GENERIC, + ReadFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, + ): return Message(data=result) - first_value = next(iter(result.values())) - if isinstance(first_value, Dataset): - return Message(data=result) return Message(structures=result) diff --git a/tests/io/csv/sdmx10/reader/test_reader_v1.py b/tests/io/csv/sdmx10/reader/test_reader_v1.py index 45ed9598..2bbf2908 100644 --- a/tests/io/csv/sdmx10/reader/test_reader_v1.py +++ b/tests/io/csv/sdmx10/reader/test_reader_v1.py @@ -5,7 +5,6 @@ from pysdmx.errors import Invalid from pysdmx.io import read_sdmx from pysdmx.io.csv.sdmx10.reader import read -from pysdmx.io.reader import ReadFormat @pytest.fixture @@ -37,7 +36,7 @@ def test_reading_data_v1(data_path): def test_reading_sdmx_csv_v1(data_path): - dataset_dict = read_sdmx(data_path, format=ReadFormat.SDMX_CSV_1_0).data + dataset_dict = read_sdmx(data_path).data assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data assert len(df) == 1000 @@ -47,7 +46,7 @@ def test_reading_sdmx_csv_v1(data_path): def test_reading_sdmx_csv_v1_string(data_path): with open(data_path, "r") as f: infile = f.read() - dataset_dict = read_sdmx(infile, format=ReadFormat.SDMX_CSV_1_0).data + dataset_dict = read_sdmx(infile).data assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data assert len(df) == 1000 diff --git a/tests/io/csv/sdmx20/reader/test_reader_v2.py b/tests/io/csv/sdmx20/reader/test_reader_v2.py index bb2346a3..495b2eb5 100644 --- a/tests/io/csv/sdmx20/reader/test_reader_v2.py +++ b/tests/io/csv/sdmx20/reader/test_reader_v2.py @@ -5,7 +5,6 @@ from pysdmx.errors import Invalid from pysdmx.io import read_sdmx from pysdmx.io.csv.sdmx20.reader import read -from pysdmx.io.reader import ReadFormat @pytest.fixture @@ -79,7 +78,7 @@ def test_reading_data_v2(data_path): def test_reading_sdmx_csv_v2(data_path): - dataset_dict = read_sdmx(data_path, format=ReadFormat.SDMX_CSV_2_0).data + dataset_dict = read_sdmx(data_path).data assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data assert len(df) == 1000 @@ -91,7 +90,7 @@ def test_reading_sdmx_csv_v2(data_path): def test_reading_sdmx_csv_v2_string(data_path): with open(data_path, "r") as f: infile = f.read() - dataset_dict = read_sdmx(infile, format=ReadFormat.SDMX_CSV_2_0).data + dataset_dict = read_sdmx(infile).data assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data assert len(df) == 1000 diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py index e1aa5ffc..d8354ed4 100644 --- a/tests/io/test_general_reader.py +++ b/tests/io/test_general_reader.py @@ -4,7 +4,7 @@ from pysdmx.errors import Invalid from pysdmx.io import read_sdmx -from pysdmx.io.reader import ReadFormat +from pysdmx.io.enums import ReadFormat @pytest.fixture @@ -16,16 +16,21 @@ def empty_message(): def test_read_sdmx_invalid_extension(): - with pytest.raises(Invalid, match="Invalid format"): - read_sdmx(",,,,", format=ReadFormat.SDMX_ML_2_1) + with pytest.raises(Invalid, match="Cannot parse input as SDMX."): + read_sdmx(",,,,") def test_read_format_str(): - assert str(ReadFormat.SDMX_ML_2_1) == "SDMX-ML 2.1" + assert str(ReadFormat.SDMX_ML_2_1_STRUCTURE) == "SDMX-ML 2.1 Structure" + assert str(ReadFormat.SDMX_ML_2_1_DATA_GENERIC) == "SDMX-ML 2.1 Generic" + assert ( + str(ReadFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC) + == "SDMX-ML 2.1 StructureSpecific" + ) assert str(ReadFormat.SDMX_CSV_1_0) == "SDMX-CSV 1.0" assert str(ReadFormat.SDMX_CSV_2_0) == "SDMX-CSV 2.0" def test_empty_result(empty_message): with pytest.raises(Invalid, match="Empty SDMX Message"): - read_sdmx(empty_message, format=ReadFormat.SDMX_ML_2_1, validate=False) + read_sdmx(empty_message, validate=False) diff --git a/tests/io/test_input_processor.py b/tests/io/test_input_processor.py index 21f8569a..53128b76 100644 --- a/tests/io/test_input_processor.py +++ b/tests/io/test_input_processor.py @@ -4,6 +4,7 @@ import pytest from pysdmx.errors import Invalid, NotImplemented +from pysdmx.io.enums import ReadFormat from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.xml.sdmx21.reader import read_xml @@ -47,33 +48,33 @@ def invalid_message_xml(): def test_process_string_to_read(valid_xml, valid_xml_path): - infile, filetype = process_string_to_read(valid_xml_path) + infile, read_format = process_string_to_read(valid_xml_path) assert infile == valid_xml - assert filetype == "xml" + assert read_format == ReadFormat.SDMX_ML_2_1_STRUCTURE def test_process_string_to_read_bytes(valid_xml, valid_xml_bytes): - infile, filetype = process_string_to_read(valid_xml_bytes) + infile, read_format = process_string_to_read(valid_xml_bytes) assert infile == valid_xml - assert filetype == "xml" + assert read_format == ReadFormat.SDMX_ML_2_1_STRUCTURE def test_process_string_to_read_str(valid_xml): - infile, filetype = process_string_to_read(valid_xml) + infile, read_format = process_string_to_read(valid_xml) assert infile == valid_xml - assert filetype == "xml" + assert read_format == ReadFormat.SDMX_ML_2_1_STRUCTURE def test_process_string_to_read_str_path(valid_xml, valid_xml_path): - infile, filetype = process_string_to_read(str(valid_xml_path)) + infile, read_format = process_string_to_read(str(valid_xml_path)) assert infile == valid_xml - assert filetype == "xml" + assert read_format == ReadFormat.SDMX_ML_2_1_STRUCTURE def test_process_string_to_read_bom(valid_xml, valid_xml_bom): - infile, filetype = process_string_to_read(valid_xml_bom) + infile, read_format = process_string_to_read(valid_xml_bom) assert infile[:5] == " Date: Thu, 9 Jan 2025 16:05:48 +0100 Subject: [PATCH 19/62] Linting changes. Signed-off-by: javier.hernandez --- src/pysdmx/io/enums.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/pysdmx/io/enums.py b/src/pysdmx/io/enums.py index 4ae02449..23d0fe7b 100644 --- a/src/pysdmx/io/enums.py +++ b/src/pysdmx/io/enums.py @@ -1,3 +1,5 @@ +"""IO Enumerations for SDMX files.""" + from enum import Enum From 03dd8adb72eb19ae262bb1e48f9819be81efbe83 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 9 Jan 2025 17:47:15 +0100 Subject: [PATCH 20/62] Renamed ReadFormat to SDMXFormat. Added Submission and Error formats detection on SDMX-ML. Fixed tests. Signed-off-by: javier.hernandez --- src/pysdmx/io/enums.py | 4 +- src/pysdmx/io/input_processor.py | 32 +++++++------ src/pysdmx/io/reader.py | 25 +++++----- src/pysdmx/model/message.py | 14 +++--- tests/io/test_general_reader.py | 12 ++--- tests/io/test_input_processor.py | 14 +++--- tests/io/xml/sdmx21/reader/test_reader.py | 48 +++++++++---------- .../sdmx21/writer/test_structures_writing.py | 8 ++-- 8 files changed, 83 insertions(+), 74 deletions(-) diff --git a/src/pysdmx/io/enums.py b/src/pysdmx/io/enums.py index 23d0fe7b..06b328a1 100644 --- a/src/pysdmx/io/enums.py +++ b/src/pysdmx/io/enums.py @@ -3,12 +3,14 @@ from enum import Enum -class ReadFormat(Enum): +class SDMXFormat(Enum): """Enumeration of supported SDMX read formats.""" SDMX_ML_2_1_STRUCTURE = "SDMX-ML 2.1 Structure" SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC = "SDMX-ML 2.1 StructureSpecific" SDMX_ML_2_1_DATA_GENERIC = "SDMX-ML 2.1 Generic" + SDMX_ML_2_1_SUBMISSION = "SDMX-ML 2.1 Submission" + SDMX_ML_2_1_ERROR = "SDMX-ML 2.1 Error" SDMX_JSON_2 = "SDMX-JSON 2.0.0" FUSION_JSON = "FusionJSON" SDMX_CSV_1_0 = "SDMX-CSV 1.0" diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 3dfb06ce..009d75af 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -11,8 +11,7 @@ import pandas as pd from pysdmx.errors import Invalid - -from .enums import ReadFormat +from pysdmx.io.enums import SDMXFormat def __remove_bom(input_string: str) -> str: @@ -44,28 +43,33 @@ def __check_json(infile: str) -> bool: return False -def __get_sdmx_ml_flavour(infile: str) -> Tuple[str, ReadFormat]: - if "generic" in infile.lower(): - return infile, ReadFormat.SDMX_ML_2_1_DATA_GENERIC - if "structurespecificdata" in infile.lower(): - return infile, ReadFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC - if "structure" in infile.lower(): - return infile, ReadFormat.SDMX_ML_2_1_STRUCTURE +def __get_sdmx_ml_flavour(infile: str) -> Tuple[str, SDMXFormat]: + flavour_check = infile[:1000].lower() + if ":generic" in flavour_check: + return infile, SDMXFormat.SDMX_ML_2_1_DATA_GENERIC + if ":structurespecificdata" in flavour_check: + return infile, SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC + if ":structure" in flavour_check: + return infile, SDMXFormat.SDMX_ML_2_1_STRUCTURE + if ":registryinterface" in flavour_check: + return infile, SDMXFormat.SDMX_ML_2_1_SUBMISSION + if ":error" in flavour_check: + return infile, SDMXFormat.SDMX_ML_2_1_ERROR raise Invalid("Validation Error", "Cannot parse input as SDMX.") -def __get_sdmx_csv_flavour(infile: str) -> Tuple[str, ReadFormat]: +def __get_sdmx_csv_flavour(infile: str) -> Tuple[str, SDMXFormat]: headers = csv.reader(StringIO(infile)).__next__() if "DATAFLOW" in headers: - return infile, ReadFormat.SDMX_CSV_1_0 + return infile, SDMXFormat.SDMX_CSV_1_0 elif "STRUCTURE" in headers and "STRUCTURE_ID" in headers: - return infile, ReadFormat.SDMX_CSV_2_0 + return infile, SDMXFormat.SDMX_CSV_2_0 raise Invalid("Validation Error", "Cannot parse input as SDMX.") def process_string_to_read( infile: Union[str, Path, BytesIO], -) -> Tuple[str, ReadFormat]: +) -> Tuple[str, SDMXFormat]: """Processes the input that comes into read_sdmx function. Args: @@ -100,7 +104,7 @@ def process_string_to_read( # Check if string is a valid JSON if __check_json(out_str): - return out_str, ReadFormat.SDMX_JSON_2 + return out_str, SDMXFormat.SDMX_JSON_2 # Check if string is a valid XML if __check_xml(out_str): diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index c0ab26df..7a4e9f2d 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -4,8 +4,8 @@ from pathlib import Path from typing import Union -from pysdmx.errors import Invalid -from pysdmx.io.enums import ReadFormat +from pysdmx.errors import Invalid, NotImplemented +from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read from pysdmx.model.message import Message @@ -42,9 +42,9 @@ def read_sdmx( input_str, read_format = process_string_to_read(infile) if read_format in ( - ReadFormat.SDMX_ML_2_1_DATA_GENERIC, - ReadFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, - ReadFormat.SDMX_ML_2_1_STRUCTURE, + SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, + SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, + SDMXFormat.SDMX_ML_2_1_STRUCTURE, ): # SDMX-ML 2.1 from pysdmx.io.xml.sdmx21.reader import read_xml @@ -52,7 +52,9 @@ def read_sdmx( result = read_xml( input_str, validate=validate, use_dataset_id=use_dataset_id ) - elif read_format == ReadFormat.SDMX_CSV_1_0: + elif read_format in (SDMXFormat.SDMX_JSON_2, SDMXFormat.FUSION_JSON): + raise NotImplemented("JSON formats reading are not supported yet") + elif read_format == SDMXFormat.SDMX_CSV_1_0: # SDMX-CSV 1.0 from pysdmx.io.csv.sdmx10.reader import read @@ -66,15 +68,14 @@ def read_sdmx( if len(result) == 0: raise Invalid("Empty SDMX Message") - # TODO: Add here the Schema download for Datasets, based on structure - # Returning a Message class if read_format in ( - ReadFormat.SDMX_CSV_1_0, - ReadFormat.SDMX_CSV_2_0, - ReadFormat.SDMX_ML_2_1_DATA_GENERIC, - ReadFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, + SDMXFormat.SDMX_CSV_1_0, + SDMXFormat.SDMX_CSV_2_0, + SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, + SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, ): + # TODO: Add here the Schema download for Datasets, based on structure return Message(data=result) return Message(structures=result) diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 72844e4e..26cdaed3 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -14,7 +14,7 @@ import uuid from datetime import datetime, timezone -from typing import Any, Dict, Optional, Union +from typing import Any, Dict, Optional, Sequence, Union from msgspec import Struct @@ -83,7 +83,7 @@ class Message(Struct, frozen=True): ], ] ] = None - data: Optional[Dict[str, Dataset]] = None + data: Optional[Sequence[Dataset]] = None def __post_init__(self) -> None: """Checks if the content is valid.""" @@ -106,7 +106,7 @@ def __post_init__(self) -> None: "structure on structures.", ) if self.data is not None: - for data_value in self.data.values(): + for data_value in self.data: if not isinstance(data_value, Dataset): raise Invalid( f"Invalid data type: " @@ -184,7 +184,7 @@ def get_dataflow(self, short_urn: str) -> Dataflow: """Returns a specific Dataflow.""" return self.__get_single_structure(DFWS, short_urn) - def get_datasets(self) -> Dict[str, Dataset]: + def get_datasets(self) -> Sequence[Dataset]: """Returns the Datasets.""" if self.data is not None: return self.data @@ -195,8 +195,10 @@ def get_datasets(self) -> Dict[str, Dataset]: def get_dataset(self, short_urn: str) -> Dataset: """Returns a specific Dataset.""" - if self.data is not None and short_urn in self.data: - return self.data[short_urn] + if self.data is not None: + for dataset in self.data: + if dataset.short_urn == short_urn: + return dataset raise NotFound( f"No Dataset with Short URN {short_urn} found in content", "Could not find the requested Dataset.", diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py index d8354ed4..b2859d31 100644 --- a/tests/io/test_general_reader.py +++ b/tests/io/test_general_reader.py @@ -4,7 +4,7 @@ from pysdmx.errors import Invalid from pysdmx.io import read_sdmx -from pysdmx.io.enums import ReadFormat +from pysdmx.io.enums import SDMXFormat @pytest.fixture @@ -21,14 +21,14 @@ def test_read_sdmx_invalid_extension(): def test_read_format_str(): - assert str(ReadFormat.SDMX_ML_2_1_STRUCTURE) == "SDMX-ML 2.1 Structure" - assert str(ReadFormat.SDMX_ML_2_1_DATA_GENERIC) == "SDMX-ML 2.1 Generic" + assert str(SDMXFormat.SDMX_ML_2_1_STRUCTURE) == "SDMX-ML 2.1 Structure" + assert str(SDMXFormat.SDMX_ML_2_1_DATA_GENERIC) == "SDMX-ML 2.1 Generic" assert ( - str(ReadFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC) + str(SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC) == "SDMX-ML 2.1 StructureSpecific" ) - assert str(ReadFormat.SDMX_CSV_1_0) == "SDMX-CSV 1.0" - assert str(ReadFormat.SDMX_CSV_2_0) == "SDMX-CSV 2.0" + assert str(SDMXFormat.SDMX_CSV_1_0) == "SDMX-CSV 1.0" + assert str(SDMXFormat.SDMX_CSV_2_0) == "SDMX-CSV 2.0" def test_empty_result(empty_message): diff --git a/tests/io/test_input_processor.py b/tests/io/test_input_processor.py index 53128b76..e1fb7e4c 100644 --- a/tests/io/test_input_processor.py +++ b/tests/io/test_input_processor.py @@ -4,7 +4,7 @@ import pytest from pysdmx.errors import Invalid, NotImplemented -from pysdmx.io.enums import ReadFormat +from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.xml.sdmx21.reader import read_xml @@ -50,31 +50,31 @@ def invalid_message_xml(): def test_process_string_to_read(valid_xml, valid_xml_path): infile, read_format = process_string_to_read(valid_xml_path) assert infile == valid_xml - assert read_format == ReadFormat.SDMX_ML_2_1_STRUCTURE + assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE def test_process_string_to_read_bytes(valid_xml, valid_xml_bytes): infile, read_format = process_string_to_read(valid_xml_bytes) assert infile == valid_xml - assert read_format == ReadFormat.SDMX_ML_2_1_STRUCTURE + assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE def test_process_string_to_read_str(valid_xml): infile, read_format = process_string_to_read(valid_xml) assert infile == valid_xml - assert read_format == ReadFormat.SDMX_ML_2_1_STRUCTURE + assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE def test_process_string_to_read_str_path(valid_xml, valid_xml_path): infile, read_format = process_string_to_read(str(valid_xml_path)) assert infile == valid_xml - assert read_format == ReadFormat.SDMX_ML_2_1_STRUCTURE + assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE def test_process_string_to_read_bom(valid_xml, valid_xml_bom): infile, read_format = process_string_to_read(valid_xml_bom) assert infile[:5] == " Date: Fri, 10 Jan 2025 10:31:06 +0100 Subject: [PATCH 21/62] Ignored mypy error. Signed-off-by: javier.hernandez --- src/pysdmx/io/reader.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 7a4e9f2d..0da250d7 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -76,6 +76,8 @@ def read_sdmx( SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, ): # TODO: Add here the Schema download for Datasets, based on structure - return Message(data=result) + # TODO: Ensure we have changed the signature of the data readers + return Message(data=result) # type: ignore[arg-type] + # TODO: Ensure we have changed the signature of the structure readers return Message(structures=result) From 5818c4036655751cd1d7493fb938914a02a5c08b Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Fri, 10 Jan 2025 10:46:20 +0100 Subject: [PATCH 22/62] Added to_schema method to DataStructureDefinition. Draft code for get_datasets method. Signed-off-by: javier.hernandez --- src/pysdmx/io/reader.py | 44 ++++++++++++++++++++++++++++++++++-- src/pysdmx/model/dataflow.py | 12 ++++++++++ 2 files changed, 54 insertions(+), 2 deletions(-) diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 0da250d7..dd4c2448 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -2,12 +2,14 @@ from io import BytesIO from pathlib import Path -from typing import Union +from typing import Sequence, Union -from pysdmx.errors import Invalid, NotImplemented +from pysdmx.errors import Invalid, NotFound, NotImplemented from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read +from pysdmx.model.dataset import Dataset from pysdmx.model.message import Message +from pysdmx.util import parse_short_urn def read_sdmx( @@ -81,3 +83,41 @@ def read_sdmx( # TODO: Ensure we have changed the signature of the structure readers return Message(structures=result) + + +def get_datasets( + data: Union[str, Path, BytesIO], structure: Union[str, Path, BytesIO] +) -> Sequence[Dataset]: + """Reads a data message and a structure message and returns a dataset. + + Args: + data: Path to file (pathlib.Path), URL, or string for the data message. + structure: + Path to file (pathlib.Path), URL, or string + for the structure message. + + Returns: + A sequence of Datasets + """ + data_msg = read_sdmx(data) + if data_msg.data is None: + raise Invalid("No data found in the data message") + + structure_msg = read_sdmx(structure) + if structure_msg.structures is None: + raise Invalid("No structure found in the structure message") + + for dataset in data_msg.data: + short_urn = dataset.structure + if isinstance(short_urn, str): + sdmx_type = parse_short_urn(short_urn).sdmx_type + if sdmx_type == "DataStructure": + try: + dsd = structure_msg.get_data_structure_definition( + short_urn + ) + dataset.structure = dsd.to_schema() + except NotFound: + continue + + return data_msg.data diff --git a/src/pysdmx/model/dataflow.py b/src/pysdmx/model/dataflow.py index b9539379..fb245b1b 100644 --- a/src/pysdmx/model/dataflow.py +++ b/src/pysdmx/model/dataflow.py @@ -440,6 +440,18 @@ class DataStructureDefinition(MaintainableArtefact, frozen=True, kw_only=True): components: Components + def to_schema(self) -> Schema: + """Generates a Schema class from the DataStructureDefinition.""" + return Schema( + context="datastructure", + agency=self.agency.id + if isinstance(self.agency, Agency) + else self.agency, + id=self.id, + components=self.components, + version=self.version, + ) + class Dataflow(MaintainableArtefact, frozen=True, omit_defaults=True): """A flow of data that providers will provide.""" From 6a4bac74e232fa049ca7ca79aca854771d2dd594 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Fri, 10 Jan 2025 12:43:11 +0100 Subject: [PATCH 23/62] Replaced whole URN to Short URN in Dataset. Added tests to match coverage. Signed-off-by: javier.hernandez --- src/pysdmx/io/csv/sdmx10/reader/__init__.py | 5 +- src/pysdmx/io/csv/sdmx20/reader/__init__.py | 15 +- src/pysdmx/io/input_processor.py | 4 +- src/pysdmx/io/reader.py | 36 +- src/pysdmx/io/xml/sdmx21/reader/data_read.py | 10 +- src/pysdmx/model/dataset.py | 4 +- src/pysdmx/model/message.py | 8 +- tests/io/csv/sdmx20/writer/test_writer_v2.py | 6 +- tests/io/samples/data.xml | 4025 ++++++++++++++++++ tests/io/samples/data_v1.csv | 1001 +++++ tests/io/samples/dataflow.xml | 24 + tests/io/samples/datastructure.xml | 844 ++++ tests/io/samples/sdmx.json | 1057 +++++ tests/io/test_general_reader.py | 79 +- tests/io/test_input_processor.py | 5 + tests/io/test_pandas_dataset.py | 16 - tests/model/test_message.py | 17 +- 17 files changed, 7080 insertions(+), 76 deletions(-) create mode 100644 tests/io/samples/data.xml create mode 100644 tests/io/samples/data_v1.csv create mode 100644 tests/io/samples/dataflow.xml create mode 100644 tests/io/samples/datastructure.xml create mode 100644 tests/io/samples/sdmx.json diff --git a/src/pysdmx/io/csv/sdmx10/reader/__init__.py b/src/pysdmx/io/csv/sdmx10/reader/__init__.py index 2e43a9fe..891efa3f 100644 --- a/src/pysdmx/io/csv/sdmx10/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx10/reader/__init__.py @@ -14,10 +14,7 @@ def __generate_dataset_from_sdmx_csv(data: pd.DataFrame) -> PandasDataset: structure_id = data["DATAFLOW"].iloc[0] # Drop 'DATAFLOW' column from DataFrame df_csv = data.drop(["DATAFLOW"], axis=1) - urn = ( - f"urn:sdmx:org.sdmx.infomodel.datastructure." - f"DataFlow={structure_id}" - ) + urn = f"DataFlow={structure_id}" # Extract dataset attributes from sdmx-csv (all values are the same) attributes = { diff --git a/src/pysdmx/io/csv/sdmx20/reader/__init__.py b/src/pysdmx/io/csv/sdmx20/reader/__init__.py index 01f183e7..b3ab389b 100644 --- a/src/pysdmx/io/csv/sdmx20/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/reader/__init__.py @@ -49,20 +49,11 @@ def __generate_dataset_from_sdmx_csv(data: pd.DataFrame) -> PandasDataset: df_csv = data.drop(["STRUCTURE", "STRUCTURE_ID"], axis=1) if structure_type == "DataStructure".lower(): - urn = ( - "urn:sdmx:org.sdmx.infomodel.datastructure." - f"DataStructure={structure_id}" - ) + urn = f"DataStructure={structure_id}" elif structure_type == "DataFlow".lower(): - urn = ( - "urn:sdmx:org.sdmx.infomodel.datastructure." - f"DataFlow={structure_id}" - ) + urn = f"DataFlow={structure_id}" elif structure_type == "dataprovision": - urn = ( - f"urn:sdmx:org.sdmx.infomodel.registry." - f"ProvisionAgreement={structure_id}" - ) + urn = f"ProvisionAgreement={structure_id}" else: raise Invalid( "Invalid value on STRUCTURE column", diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 009d75af..46437c86 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -55,7 +55,7 @@ def __get_sdmx_ml_flavour(infile: str) -> Tuple[str, SDMXFormat]: return infile, SDMXFormat.SDMX_ML_2_1_SUBMISSION if ":error" in flavour_check: return infile, SDMXFormat.SDMX_ML_2_1_ERROR - raise Invalid("Validation Error", "Cannot parse input as SDMX.") + raise Invalid("Validation Error", "Cannot parse input as SDMX-ML.") def __get_sdmx_csv_flavour(infile: str) -> Tuple[str, SDMXFormat]: @@ -64,7 +64,7 @@ def __get_sdmx_csv_flavour(infile: str) -> Tuple[str, SDMXFormat]: return infile, SDMXFormat.SDMX_CSV_1_0 elif "STRUCTURE" in headers and "STRUCTURE_ID" in headers: return infile, SDMXFormat.SDMX_CSV_2_0 - raise Invalid("Validation Error", "Cannot parse input as SDMX.") + raise Invalid("Validation Error", "Cannot parse input as SDMX-CSV.") def process_string_to_read( diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index dd4c2448..cdbf16a0 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -7,6 +7,7 @@ from pysdmx.errors import Invalid, NotFound, NotImplemented from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read +from pysdmx.model import Schema from pysdmx.model.dataset import Dataset from pysdmx.model.message import Message from pysdmx.util import parse_short_urn @@ -21,8 +22,6 @@ def read_sdmx( Supported metadata formats are: - SDMX-ML 2.1 - - SDMX JSON 2.0.0 - - FusionJSON Supported data formats are: - SDMX-ML 2.1 @@ -79,7 +78,7 @@ def read_sdmx( ): # TODO: Add here the Schema download for Datasets, based on structure # TODO: Ensure we have changed the signature of the data readers - return Message(data=result) # type: ignore[arg-type] + return Message(data=result) # TODO: Ensure we have changed the signature of the structure readers return Message(structures=result) @@ -100,24 +99,25 @@ def get_datasets( A sequence of Datasets """ data_msg = read_sdmx(data) - if data_msg.data is None: + if not data_msg.data: raise Invalid("No data found in the data message") structure_msg = read_sdmx(structure) if structure_msg.structures is None: raise Invalid("No structure found in the structure message") - for dataset in data_msg.data: - short_urn = dataset.structure - if isinstance(short_urn, str): - sdmx_type = parse_short_urn(short_urn).sdmx_type - if sdmx_type == "DataStructure": - try: - dsd = structure_msg.get_data_structure_definition( - short_urn - ) - dataset.structure = dsd.to_schema() - except NotFound: - continue - - return data_msg.data + for dataset in data_msg.data.values(): + short_urn: str = ( + dataset.structure.short_urn + if isinstance(dataset.structure, Schema) + else dataset.structure + ) + sdmx_type = parse_short_urn(short_urn).sdmx_type + if sdmx_type == "DataStructure": + try: + dsd = structure_msg.get_data_structure_definition(short_urn) + dataset.structure = dsd.to_schema() + except NotFound: + continue + + return list(data_msg.data.values()) diff --git a/src/pysdmx/io/xml/sdmx21/reader/data_read.py b/src/pysdmx/io/xml/sdmx21/reader/data_read.py index cba72d1e..027c7865 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/data_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/data_read.py @@ -269,10 +269,7 @@ def __parse_structure_specific_data( # Structure Specific All dimensions df = pd.DataFrame(dataset[OBS]).replace(np.nan, "") - urn = ( - "urn:sdmx:org.sdmx.infomodel.datastructure." - f"{structure_info['structure_type']}={structure_info['unique_id']}" - ) + urn = f"{structure_info['structure_type']}={structure_info['unique_id']}" return PandasDataset( structure=urn, attributes=attached_attributes, data=df @@ -292,10 +289,7 @@ def __parse_generic_data( # Generic All Dimensions df = __reading_generic_all(dataset) - urn = ( - "urn:sdmx:org.sdmx.infomodel.datastructure." - f"{structure_info['structure_type']}={structure_info['unique_id']}" - ) + urn = f"{structure_info['structure_type']}={structure_info['unique_id']}" return PandasDataset( structure=urn, attributes=attached_attributes, data=df diff --git a/src/pysdmx/model/dataset.py b/src/pysdmx/model/dataset.py index be063933..9382e91c 100644 --- a/src/pysdmx/model/dataset.py +++ b/src/pysdmx/model/dataset.py @@ -76,9 +76,7 @@ def short_urn(self) -> str: URN formatted string """ if isinstance(self.structure, str): - structure_type, unique_id = self.structure.split("=", maxsplit=1) - structure = structure_type.rsplit(".", maxsplit=1)[1] - return f"{structure}={unique_id}" + return self.structure else: s = self.structure return f"{s.context}={s.agency}:{s.id}({s.version})" diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 26cdaed3..f20dbafa 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -83,7 +83,7 @@ class Message(Struct, frozen=True): ], ] ] = None - data: Optional[Sequence[Dataset]] = None + data: Optional[Dict[str, Dataset]] = None def __post_init__(self) -> None: """Checks if the content is valid.""" @@ -106,7 +106,7 @@ def __post_init__(self) -> None: "structure on structures.", ) if self.data is not None: - for data_value in self.data: + for data_value in self.data.values(): if not isinstance(data_value, Dataset): raise Invalid( f"Invalid data type: " @@ -187,7 +187,7 @@ def get_dataflow(self, short_urn: str) -> Dataflow: def get_datasets(self) -> Sequence[Dataset]: """Returns the Datasets.""" if self.data is not None: - return self.data + return list(self.data.values()) raise NotFound( "No Datasets found in content", "Could not find any Datasets in content.", @@ -196,7 +196,7 @@ def get_datasets(self) -> Sequence[Dataset]: def get_dataset(self, short_urn: str) -> Dataset: """Returns a specific Dataset.""" if self.data is not None: - for dataset in self.data: + for dataset in self.data.values(): if dataset.short_urn == short_urn: return dataset raise NotFound( diff --git a/tests/io/csv/sdmx20/writer/test_writer_v2.py b/tests/io/csv/sdmx20/writer/test_writer_v2.py index d124f196..00306c62 100644 --- a/tests/io/csv/sdmx20/writer/test_writer_v2.py +++ b/tests/io/csv/sdmx20/writer/test_writer_v2.py @@ -58,8 +58,7 @@ def test_writer_attached_attrs(data_path, data_path_reference_attch_atts): dataset = PandasDataset( attributes={"DECIMALS": 3}, data=pd.read_json(data_path, orient="records"), - structure="urn:sdmx:org.sdmx.infomodel.datastructure." - "DataStructure=MD:DS1(2.0)", + structure="DataStructure=MD:DS1(2.0)", ) dataset.data = dataset.data.astype(str) result_sdmx = writer(dataset) @@ -76,8 +75,7 @@ def test_writer_with_action(data_path, data_path_reference_action): dataset = PandasDataset( attributes={"DECIMALS": 3}, data=pd.read_json(data_path, orient="records"), - structure="urn:sdmx:org.sdmx.infomodel.datastructure." - "DataStructure=MD:DS1(2.0)", + structure="DataStructure=MD:DS1(2.0)", action=ActionType.Replace, ) dataset.data = dataset.data.astype(str) diff --git a/tests/io/samples/data.xml b/tests/io/samples/data.xml new file mode 100644 index 00000000..f9eb28fe --- /dev/null +++ b/tests/io/samples/data.xml @@ -0,0 +1,4025 @@ + + + + test + true + 2021-03-08T17:05:06 + + + + + + + + + + + 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file mode 100644 index 00000000..f99c0e99 --- /dev/null +++ b/tests/io/samples/dataflow.xml @@ -0,0 +1,24 @@ + + + + ID + true + 2021-01-01T00:00:00 + + + PySDMX + + + + + OTC derivatives turnover + OTC derivatives and FX spot - turnover + + + + + + + \ No newline at end of file diff --git a/tests/io/samples/datastructure.xml b/tests/io/samples/datastructure.xml new file mode 100644 index 00000000..c8522b56 --- /dev/null +++ b/tests/io/samples/datastructure.xml @@ -0,0 +1,844 @@ + + + + ID + true + 2021-01-01T00:00:00 + + + PySDMX + + + + + BIS derivatives statistics + Estadísticas de derivados del BIS + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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"https://raw.githubusercontent.com/sdmx-twg/sdmx-json/master/structure-message/tools/schemas/2.0.0/sdmx-json-structure-schema.json", + "id": "IDREF401067", + "test": false, + "prepared": "2021-09-01T20:00:51Z", + "contentLanguages": [ + "en" + ], + "sender": { + "id": "ECB" + }, + "receivers": [ + { + "id": "not_supplied" + } + ], + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/dataflow/ECB/EXR/1.0?references=all", + "rel": "self", + "hreflang": "en" + } + ] + }, + "data": { + "dataStructures": [ + { + "id": "ECB_EXR1", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Exchange Rates", + "names": { + "en": "Exchange Rates" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/datastructure/ECB/ECB_EXR1/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.datastructure.DataStructure=ECB:ECB_EXR1(1.0)", + "type": "datastructure", + "hreflang": "en" + } + ], + "dataStructureComponents": 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"localRepresentation": { + "enumeration": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_SUFFIX(1.0)" + } + } + ], + "timeDimensions": [ + { + "id": "TIME_PERIOD", + "links": [ + { + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.datastructure.TimeDimension=ECB:ECB_EXR1(1.0).TIME_PERIOD", + "hreflang": "en" + } + ], + "position": 6, + "type": "Dimension", + "conceptIdentity": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).TIME_PERIOD", + "localRepresentation": { + "format": { + "textType": "ObservationalTimePeriod" + } + } + } + ] + }, + "groups": [ + { + "id": "Group", + "links": [ + { + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.datastructure.GroupDimensionDescriptor=ECB:ECB_EXR1(1.0).Group", + "hreflang": "en" + } + ], + "groupDimensions": [ + "CURRENCY", + "CURRENCY_DENOM", + "EXR_TYPE", + "EXR_SUFFIX" + ] + } + ], + "measureList": { + "id": "MeasureDescriptor", + "links": [ + { + "rel": "self", + "urn": 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It is used for grouping all dataflows following the top-level categories displayed on the SDW portal.", + "descriptions": { + "en": "This category scheme is used for the Data Explorer of the ECB SDW mobile application. It is used for grouping all dataflows following the top-level categories displayed on the SDW portal." + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/categoryscheme/ECB/MOBILE_NAVI/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.categoryscheme.CategoryScheme=ECB:MOBILE_NAVI(1.0)", + "type": "categoryscheme", + "hreflang": "en" + } + ], + "isPartial": true, + "categories": [ + { + "id": "00", + "name": "Parent category", + "names": { + "en": "Parent category" + }, + "description": "Parent category example", + "descriptions": { + "en": "Parent category example" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/categoryscheme/ECB/MOBILE_NAVI/1.0/00", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.categoryscheme.CategoryScheme=ECB:MOBILE_NAVI(1.0).00", + "type": "category", + "hreflang": "en" + } + ], + "categories": [ + { + "id": "07", + "name": "Exchange rates", + "names": { + "en": "Exchange rates" + }, + "description": "This section shows the euro foreign exchange reference rates that are based on the regular daily concertation procedure between central banks within and outside the European System of Central Banks, which normally takes place at 2.15 p.m. ECB time (CET). It also shows the nominal effective exchange rates of the euro as calculated by the ECB.", + "descriptions": { + "en": "This section shows the euro foreign exchange reference rates that are based on the regular daily concertation procedure between central banks within and outside the European System of Central Banks, which normally takes place at 2.15 p.m. ECB time (CET). It also shows the nominal effective exchange rates of the euro as calculated by the ECB." + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/categoryscheme/ECB/MOBILE_NAVI/1.0/07", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.categoryscheme.Category=ECB:MOBILE_NAVI(1.0).07", + "type": "category", + "hreflang": "en" + } + ] + } + ] + } + ] + } + ], + "conceptSchemes": [ + { + "id": "ECB_CONCEPTS", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "ECB concepts", + "names": { + "en": "ECB concepts" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.ConceptScheme=ECB:ECB_CONCEPTS(1.0)", + "type": "conceptscheme", + "hreflang": "en" + } + ], + "isPartial": true, + "concepts": [ + { + "id": "CURRENCY", + "name": "Currency", + "names": { + "en": "Currency" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0/CURRENCY", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).CURRENCY", + "type": "concept", + "hreflang": "en" + } + ] + }, + { + "id": "FREQ", + "name": "Frequency", + "names": { + "en": "Frequency" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0/FREQ", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).FREQ", + "type": "concept", + "hreflang": "en" + } + ] + }, + { + "id": "CURRENCY_DENOM", + "name": "Currency denominator", + "names": { + "en": "Currency denominator" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0/CURRENCY_DENOM", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).CURRENCY_DENOM", + "type": "concept", + "hreflang": "en" + } + ] + }, + { + "id": "EXR_TYPE", + "name": "Exchange rate type", + "names": { + "en": "Exchange rate type" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0/EXR_TYPE", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).EXR_TYPE", + "type": "concept", + "hreflang": "en" + } + ] + }, + { + "id": "EXR_SUFFIX", + "name": "Series variation - EXR context", + "names": { + "en": "Series variation - EXR context" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0/EXR_SUFFIX", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).EXR_SUFFIX", + "type": "concept", + "hreflang": "en" + } + ] + }, + { + "id": "TIME_FORMAT", + "name": "Time format code", + "names": { + "en": "Time format code" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0/TIME_FORMAT", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).TIME_FORMAT", + "type": "concept", + "hreflang": "en" + } + ] + }, + { + "id": "OBS_CONF", + "name": "Observation confidentiality", + "names": { + "en": "Observation confidentiality" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0/OBS_CONF", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).OBS_CONF", + "type": "concept", + "hreflang": "en" + } + ] + }, + { + "id": "OBS_VALUE", + "name": "OBS_VALUE", + "names": { + "en": "OBS_VALUE" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/conceptscheme/ECB/ECB_CONCEPTS/1.0/OBS_VALUE", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=ECB:ECB_CONCEPTS(1.0).OBS_VALUE", + "type": "concept", + "hreflang": "en" + } + ] + } + ] + } + ], + "codelists": [ + { + "id": "CL_FREQ", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Frequency code list", + "names": { + "en": "Frequency code list" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_FREQ/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_FREQ(1.0)", + "type": "codelist", + "hreflang": "en" + } + ], + "isPartial": true, + "codes": [ + { + "id": "A", + "name": "Annual", + "names": { + "en": "Annual" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_FREQ/1.0/A", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_FREQ(1.0).A", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "M", + "name": "Monthly", + "names": { + "en": "Monthly" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_FREQ/1.0/M", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_FREQ(1.0).M", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "Q", + "name": "Quarterly", + "names": { + "en": "Quarterly" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_FREQ/1.0/Q", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_FREQ(1.0).Q", + "type": "code", + "hreflang": "en" + } + ] + } + ] + }, + { + "id": "CL_CURRENCY", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Currency code list", + "names": { + "en": "Currency code list" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_CURRENCY/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_CURRENCY(1.0)", + "type": "codelist", + "hreflang": "en" + } + ], + "isPartial": true, + "codes": [ + { + "id": "_T", + "name": "All currencies", + "names": { + "en": "All currencies" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_CURRENCY/1.0/_T", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_CURRENCY(1.0)._T", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "EUR", + "name": "Euro", + "names": { + "en": "Euro" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_CURRENCY/1.0/EUR", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_CURRENCY(1.0).EUR", + "type": "code", + "hreflang": "en" + } + ], + "parent": "_T" + } + ] + }, + { + "id": "CL_OBS_CONF", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Currency code list", + "names": { + "en": "Currency code list" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_OBS_CONF/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_OBS_CONF(1.0)", + "type": "codelist", + "hreflang": "en" + } + ], + "isPartial": true, + "codes": [ + { + "id": "F", + "name": "Free", + "names": { + "en": "Free" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_OBS_CONF/1.0/F", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_OBS_CONF(1.0).F", + "type": "code", + "hreflang": "en" + } + ] + } + ] + }, + { + "id": "CL_EXR_SUFFIX", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Exch. rate series variation code list", + "names": { + "en": "Exch. rate series variation code list" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_SUFFIX/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_SUFFIX(1.0)", + "type": "codelist", + "hreflang": "en" + } + ], + "isPartial": true, + "codes": [ + { + "id": "A", + "name": "Average", + "names": { + "en": "Average" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_SUFFIX/1.0/A", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_SUFFIX(1.0).A", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "E", + "name": "End-of-period", + "names": { + "en": "End-of-period" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_SUFFIX/1.0/E", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_SUFFIX(1.0).E", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "P", + "name": "Growth rate to previous period", + "names": { + "en": "Growth rate to previous period" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_SUFFIX/1.0/P", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_SUFFIX(1.0).P", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "R", + "name": "Annual rate of change", + "names": { + "en": "Annual rate of change" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_SUFFIX/1.0/R", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_SUFFIX(1.0).R", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "S", + "name": "Percentage change since December 1998 (1998Q4 for quarterly data)", + "names": { + "en": "Percentage change since December 1998 (1998Q4 for quarterly data)" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_SUFFIX/1.0/S", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_SUFFIX(1.0).S", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "T", + "name": "3-year percentage change", + "names": { + "en": "3-year percentage change" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_SUFFIX/1.0/T", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_SUFFIX(1.0).T", + "type": "code", + "hreflang": "en" + } + ] + } + ] + }, + { + "id": "CL_EXR_TYPE", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Exch. rate series variation code list", + "names": { + "en": "Exch. rate series variation code list" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_TYPE/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_TYPE(1.0)", + "type": "codelist", + "hreflang": "en" + } + ], + "isPartial": true, + "codes": [ + { + "id": "NRP0", + "name": "Real harmonised competitiveness indicator Producer Prices deflated", + "names": { + "en": "Real harmonised competitiveness indicator Producer Prices deflated" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_TYPE/1.0/NRP0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_TYPE(1.0).NRP0", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "ERU1", + "name": "Real effective exch. rate ULC total economy deflated", + "names": { + "en": "Real effective exch. rate ULC total economy deflated" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_TYPE/1.0/ERU1", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_TYPE(1.0).ERU1", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "ERC0", + "name": "Real effective exch. rate CPI deflated", + "names": { + "en": "Real effective exch. rate CPI deflated" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_TYPE/1.0/ERC0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_TYPE(1.0).ERC0", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "SP00", + "name": "Spot", + "names": { + "en": "Spot" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_TYPE/1.0/SP00", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_TYPE(1.0).SP00", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "RR00", + "name": "Reference rate", + "names": { + "en": "Reference rate" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_TYPE/1.0/RR00", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_TYPE(1.0).RR00", + "type": "code", + "hreflang": "en" + } + ] + }, + { + "id": "EN00", + "name": "Nominal effective exch. rate", + "names": { + "en": "Nominal effective exch. rate" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/codelist/ECB/CL_EXR_TYPE/1.0/EN00", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.codelist.Codelist=ECB:CL_EXR_TYPE(1.0).EN00", + "type": "code", + "hreflang": "en" + } + ] + } + ] + } + ], + "agencySchemes": [ + { + "id": "AGENCIES", + "version": "1.0", + "agencyID": "SDMX", + "isExternalReference": false, + "isFinal": false, + "name": "SDMX Agency Scheme", + "names": { + "en": "SDMX Agency Scheme" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/agencyscheme/SDMX/AGENCIES/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.base.AgencyScheme=SDMX:AGENCIES(1.0)", + "type": "agencyscheme", + "hreflang": "en" + } + ], + "isPartial": true, + "agencies": [ + { + "id": "ECB", + "name": "European Central Bank", + "names": { + "en": "European Central Bank" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/agencyscheme/SDMX/AGENCIES/1.0/ECB", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.base.Agency=SDMX:AGENCIES(1.0).ECB", + "type": "agency", + "hreflang": "en" + } + ] + } + ] + } + ], + "dataflows": [ + { + "id": "EXR", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Exchange Rates", + "names": { + "en": "Exchange Rates" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/dataflow/ECB/EXR/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.datastructure.Dataflow=ECB:EXR(1.0)", + "type": "dataflow", + "hreflang": "en" + }, + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/datastructure/ECB/ECB_EXR1/1.0", + "rel": "structure", + "urn": "urn:sdmx:org.sdmx.infomodel.datastructure.DataStructure=ECB:ECB_EXR1(1.0)", + "type": "datastructure", + "hreflang": "en" + } + ], + "structure": "urn:sdmx:org.sdmx.infomodel.datastructure.DataStructure=ECB:ECB_EXR1(1.0)" + } + ], + "categorisations": [ + { + "id": "53A341E8-D48B-767E-D5FF-E2E3E0E2BB19", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Categorise: DATAFLOWECB:EXR(1.0)", + "names": { + "en": "Categorise: DATAFLOWECB:EXR(1.0)" + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/categorisation/ECB/53A341E8-D48B-767E-D5FF-E2E3E0E2BB19/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.categoryscheme.Categorisation=ECB:53A341E8-D48B-767E-D5FF-E2E3E0E2BB19(1.0)", + "type": "categorisation", + "hreflang": "en" + } + ], + "source": "urn:sdmx:org.sdmx.infomodel.datastructure.Dataflow=ECB:EXR(1.0)", + "target": "urn:sdmx:org.sdmx.infomodel.categoryscheme.Category=ECB:MOBILE_NAVI(1.0).07" + } + ], + "contentConstraints": [ + { + "type": "Allowed", + "id": "EXR_CONSTRAINTS", + "version": "1.0", + "agencyID": "ECB", + "isExternalReference": false, + "isFinal": false, + "name": "Constraints for the EXR dataflow.", + "names": { + "en": "Constraints for the EXR dataflow." + }, + "links": [ + { + "href": "https://sdw-wsrest.ecb.europa.eu/service/contentconstraint/ECB/EXR_CONSTRAINTS/1.0", + "rel": "self", + "urn": "urn:sdmx:org.sdmx.infomodel.registry.ContentConstraint=ECB:EXR_CONSTRAINTS(1.0)", + "type": "constraint", + "hreflang": "en" + } + ], + "constraintAttachment": { + "dataflows": [ + "urn:sdmx:org.sdmx.infomodel.datastructure.Dataflow=ECB:EXR(1.0)" + ] + }, + "cubeRegions": [ + { + "isIncluded": true, + "keyValues": [ + { + "id": "EXR_TYPE", + "values": [ + "NRP0", "ERU1", "ERC0", "SP00" + ] + }, + { + "id": "EXR_SUFFIX", + "values": [ + "P", "A", "R", "S", "T", "E" + ] + }, + { + "id": "FREQ", + "values": [ + "A", "Q", "M" + ] + }, + { + "id": "CURRENCY", + "values": [ + "_T", "EUR", "USD" + ] + }, + { + "id": "CURRENCY_DENOM", + "values": [ + "_T", "EUR", "USD" + ] + } + ] + } + ] + } + ] + } +} diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py index b2859d31..962a403c 100644 --- a/tests/io/test_general_reader.py +++ b/tests/io/test_general_reader.py @@ -2,9 +2,11 @@ import pytest -from pysdmx.errors import Invalid +from pysdmx.errors import Invalid, NotImplemented from pysdmx.io import read_sdmx from pysdmx.io.enums import SDMXFormat +from pysdmx.io.reader import get_datasets +from pysdmx.model import Schema @pytest.fixture @@ -15,11 +17,50 @@ def empty_message(): return text +@pytest.fixture +def sdmx_json(): + file_path = Path(__file__).parent / "samples" / "sdmx.json" + with open(file_path, "r") as f: + text = f.read() + return text + + +@pytest.fixture +def data_path(): + base_path = Path(__file__).parent / "samples" / "data.xml" + return str(base_path) + + +@pytest.fixture +def data_csv_v1_path(): + base_path = Path(__file__).parent / "samples" / "data_v1.csv" + return str(base_path) + + +@pytest.fixture +def structures_path(): + base_path = Path(__file__).parent / "samples" / "datastructure.xml" + return str(base_path) + + +@pytest.fixture +def dataflow_path(): + base_path = Path(__file__).parent / "samples" / "dataflow.xml" + return str(base_path) + + def test_read_sdmx_invalid_extension(): with pytest.raises(Invalid, match="Cannot parse input as SDMX."): read_sdmx(",,,,") +def test_read_sdmx_json_not_supported(sdmx_json): + with pytest.raises( + NotImplemented, match="JSON formats reading are not supported yet" + ): + read_sdmx(sdmx_json, validate=False) + + def test_read_format_str(): assert str(SDMXFormat.SDMX_ML_2_1_STRUCTURE) == "SDMX-ML 2.1 Structure" assert str(SDMXFormat.SDMX_ML_2_1_DATA_GENERIC) == "SDMX-ML 2.1 Generic" @@ -34,3 +75,39 @@ def test_read_format_str(): def test_empty_result(empty_message): with pytest.raises(Invalid, match="Empty SDMX Message"): read_sdmx(empty_message, validate=False) + + +def test_get_datasets_valid(data_path, structures_path): + result = get_datasets(data_path, structures_path) + assert len(result) == 1 + dataset = result[0] + assert isinstance(dataset.structure, Schema) + assert dataset.data is not None + assert len(dataset.data) == 1000 + + +def test_get_datasets_no_data_found(data_path, structures_path): + with pytest.raises(Invalid, match="No data found in the data message"): + get_datasets(structures_path, data_path) + + +def test_get_datasets_no_structure_found(data_path, structures_path): + with pytest.raises( + Invalid, match="No structure found in the structure message" + ): + get_datasets(data_path, data_path) + + +def test_get_datasets_no_datastructure(data_path, dataflow_path): + result = get_datasets(data_path, dataflow_path) + assert len(result) == 1 + assert result[0].data is not None + assert isinstance(result[0].structure, str) + + +def test_get_datasets_dataflow_reference(data_csv_v1_path, dataflow_path): + result = get_datasets(data_csv_v1_path, dataflow_path) + assert len(result) == 1 + assert result[0].data is not None + assert isinstance(result[0].structure, str) + assert result[0].structure == "DataFlow=BIS:BIS_DER(1.0)" diff --git a/tests/io/test_input_processor.py b/tests/io/test_input_processor.py index e1fb7e4c..f41395a9 100644 --- a/tests/io/test_input_processor.py +++ b/tests/io/test_input_processor.py @@ -116,3 +116,8 @@ def test_process_string_to_read_invalid_allowed_error(invalid_message_xml): message = "Cannot parse input as SDMX." with pytest.raises(NotImplemented, match=message): read_xml(invalid_message_xml, validate=False) + + +def test_invalid_xml_flavour(): + with pytest.raises(Invalid): + process_string_to_read(" Date: Fri, 10 Jan 2025 12:44:58 +0100 Subject: [PATCH 24/62] Added get_datasets to io Signed-off-by: javier.hernandez --- src/pysdmx/io/__init__.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/pysdmx/io/__init__.py b/src/pysdmx/io/__init__.py index 1e0c37ab..5340d1bc 100644 --- a/src/pysdmx/io/__init__.py +++ b/src/pysdmx/io/__init__.py @@ -1,5 +1,5 @@ """IO module for SDMX data.""" -from pysdmx.io.reader import read_sdmx +from pysdmx.io.reader import get_datasets, read_sdmx -__all__ = ["read_sdmx"] +__all__ = ["read_sdmx", "get_datasets"] From e2b2946992dfa709a46b8feb2a1cd8c16d2376d2 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Fri, 10 Jan 2025 13:28:15 +0100 Subject: [PATCH 25/62] Added URL parsing support on read_sdmx. Made httpx a mandatory dependency. Signed-off-by: javier.hernandez --- pyproject.toml | 3 +- src/pysdmx/io/input_processor.py | 70 ++++++++++++++++++++------------ src/pysdmx/io/reader.py | 6 +-- tests/io/test_general_reader.py | 22 ++++++++++ tests/io/test_input_processor.py | 7 ++-- 5 files changed, 73 insertions(+), 35 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index dcda47cb..d7deffd4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,7 +23,7 @@ classifiers = [ [tool.poetry.dependencies] python = "^3.9" -httpx = {version = "0.*", optional = true} +httpx = "0.*" msgspec = "0.*" lxml = {version = "5.*", optional = true} xmltodict = {version = "0.*", optional = true} @@ -34,7 +34,6 @@ pandas = {version = "^2.2.2", optional = true} [tool.poetry.extras] dc = ["python-dateutil"] -fmr = ["httpx"] xml = ["lxml", "xmltodict", "sdmxschemas"] data = ["pandas"] diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 46437c86..9b4ef36b 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -9,8 +9,9 @@ from typing import Tuple, Union import pandas as pd +from httpx import get as httpx_get -from pysdmx.errors import Invalid +from pysdmx.errors import Invalid, NotImplemented from pysdmx.io.enums import SDMXFormat @@ -67,13 +68,27 @@ def __get_sdmx_csv_flavour(infile: str) -> Tuple[str, SDMXFormat]: raise Invalid("Validation Error", "Cannot parse input as SDMX-CSV.") +def __check_sdmx_str(infile: str) -> Tuple[str, SDMXFormat]: + """Attempts to infer the SDMX format of the input string.""" + if __check_xml(infile): + return __get_sdmx_ml_flavour(infile) + if __check_csv(infile): + return __get_sdmx_csv_flavour(infile) + if __check_json(infile): + raise NotImplemented("JSON formats reading are not supported yet") + raise Invalid("Validation Error", "Cannot parse input as SDMX.") + + def process_string_to_read( - infile: Union[str, Path, BytesIO], + input: Union[str, Path, BytesIO], ) -> Tuple[str, SDMXFormat]: """Processes the input that comes into read_sdmx function. + Automatically detects the format of the input. The input can be a file, + URL, or string. + Args: - infile: Path to file, URL, or string. + input: Path to file, URL, or string. Returns: tuple: Tuple containing the parsed input and the format of the input. @@ -81,39 +96,40 @@ def process_string_to_read( Raises: Invalid: If the input cannot be parsed as SDMX. """ - if isinstance(infile, str) and os.path.exists(infile): - infile = Path(infile) + if isinstance(input, str) and os.path.exists(input): + input = Path(input) # Read file as string - if isinstance(infile, (Path, PathLike)): - with open(infile, "r", encoding="utf-8-sig", errors="replace") as f: + if isinstance(input, (Path, PathLike)): + with open(input, "r", encoding="utf-8-sig", errors="replace") as f: out_str = f.read() # Read from BytesIO - elif isinstance(infile, BytesIO): - text_wrap = TextIOWrapper(infile, encoding="utf-8", errors="replace") + elif isinstance(input, BytesIO): + text_wrap = TextIOWrapper(input, encoding="utf-8", errors="replace") out_str = text_wrap.read() - elif isinstance(infile, str): - out_str = infile + elif isinstance(input, str): + if input.startswith("http"): + try: + response = httpx_get(input, timeout=60) + if ( + response.status_code != 200 + and " Date: Fri, 10 Jan 2025 13:31:13 +0100 Subject: [PATCH 26/62] Updated poetry lock. 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"b8bc929c5e9763848d3e298a2ea584fd1653646c9485aa01321a0a3e8ba27c75" +content-hash = "060e04335150a024ecae7bd34e3b7f72656bfa0bb28919cc7bc9f63e4c523c50" From 4ab5896d4b820d21690aa9fb408d66343173b55b Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 13:35:35 +0100 Subject: [PATCH 27/62] Updated XML reader and writers with the new signature. Refactored tests to work with the new reader and writers. --- src/pysdmx/io/xml/__init__.py | 111 +++--------------- src/pysdmx/io/xml/sdmx21/writer/__init__.py | 26 ++-- src/pysdmx/io/xml/sdmx21/writer/error.py | 27 +++++ src/pysdmx/io/xml/sdmx21/writer/generic.py | 61 +++++++++- src/pysdmx/io/xml/sdmx21/writer/structure.py | 79 ++++++++++++- .../xml/sdmx21/writer/structure_specific.py | 72 +++++++++++- tests/io/xml/sdmx21/reader/test_reader.py | 90 +++++++------- .../io/xml/sdmx21/writer/test_data_writing.py | 48 ++++---- .../sdmx21/writer/test_structures_writing.py | 64 +++++----- 9 files changed, 364 insertions(+), 214 deletions(-) create mode 100644 src/pysdmx/io/xml/sdmx21/writer/error.py diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index cd3d4f34..d571f86f 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -1,19 +1,17 @@ """XML readers and writers.""" - from pathlib import Path -from typing import Any, Dict, List, Optional, Sequence, Union +from typing import Union, Dict, Sequence from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.reader import read_xml -from pysdmx.io.xml.sdmx21.writer import writer -from pysdmx.model import Codelist, ConceptScheme -from pysdmx.model.dataflow import Dataflow, DataStructureDefinition -from pysdmx.model.message import Header +from pysdmx.model import ConceptScheme, Codelist +from pysdmx.model.__base import ItemScheme +from pysdmx.model.dataflow import DataStructureDefinition, Dataflow +from pysdmx.model.message import SubmissionResult -STR_TYPES = Union[Codelist, ConceptScheme, DataStructureDefinition, Dataflow] +STR_TYPES = Union[ItemScheme, Codelist, ConceptScheme, DataStructureDefinition, Dataflow] STR_DICT_TYPE = Dict[str, STR_TYPES] ALL_TYPES = Union[STR_DICT_TYPE, PandasDataset] @@ -22,101 +20,26 @@ def read( infile: Union[str, Path], validate: bool = False, use_dataset_id: bool = False, -) -> Dict[str, ALL_TYPES]: +) -> Sequence[ALL_TYPES]: """Reads an SDMX-ML file and returns a dictionary with the parsed data.""" input_str, filetype = process_string_to_read(infile) if filetype == "xml": - return read_xml( + dict_ = read_xml( input_str, validate=validate, mode=None, use_dataset_id=use_dataset_id, ) + result = [] + for key, value in dict_.items(): + if isinstance(value, (PandasDataset, SubmissionResult)): + result.append(value) + else: + for item in value.values(): + result.append(item) + return result else: raise Invalid( "Invalid file type", f"File type {filetype} is not supported." - ) - - -def _write_common( - datasets: Any, - output_path: Optional[str], - prettyprint: bool, - header: Optional[Header], - dimension_at_observation: Optional[Dict[str, str]], - type_: MessageType, -) -> Optional[ - Union[str, List[str]] -]: # Use List[str] for clarity and mutability - """Internal common logic for writing data or metadata.""" - result: Optional[Union[str, List[str]]] = None - - if output_path is None: - output_path = "" - - if not isinstance(datasets, Sequence) or isinstance(datasets, Dict): - datasets = [datasets] # Convert Sequence to a mutable list - - if len(datasets) > 1: - result = [] - - for content in datasets: - if header is None: - header = Header() - - xml_str = writer( - content, - type_=type_, - path=output_path, - prettyprint=prettyprint, - header=header, - dimension_at_observation=dimension_at_observation, - ) - if isinstance(result, List): - if xml_str is not None: - result.append(xml_str) - else: - result = xml_str - - return result - - -def write_data( - datasets: Union[ - Dict[str, PandasDataset], Sequence[Dict[str, PandasDataset]] - ], - output_path: Optional[str] = None, - prettyprint: bool = True, - header: Optional[Header] = None, - dimension_at_observation: Optional[Dict[str, str]] = None, -) -> Optional[Union[str, Sequence[str]]]: - """Converts a list of datasets to an SDMX-ML format (data).""" - return _write_common( - datasets=datasets, - output_path=output_path, - prettyprint=prettyprint, - header=header, - dimension_at_observation=dimension_at_observation, - type_=MessageType.StructureSpecificDataSet, - ) - - -def write_metadata( - datasets: Union[ - Dict[str, STR_DICT_TYPE], Sequence[Dict[str, STR_DICT_TYPE]] - ], - output_path: Optional[str] = None, - prettyprint: bool = True, - header: Optional[Header] = None, - dimension_at_observation: Optional[Dict[str, str]] = None, -) -> Optional[Union[str, Sequence[str]]]: - """Converts a list of datasets to an SDMX-ML format (metadata).""" - return _write_common( - datasets=datasets, - output_path=output_path, - prettyprint=prettyprint, - header=header, - dimension_at_observation=dimension_at_observation, - type_=MessageType.Structure, - ) + ) \ No newline at end of file diff --git a/src/pysdmx/io/xml/sdmx21/writer/__init__.py b/src/pysdmx/io/xml/sdmx21/writer/__init__.py index c4fb543d..104be9ef 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__init__.py @@ -1,7 +1,8 @@ """SDMX 2.1 writer package.""" -from typing import Any, Dict, Optional +from typing import Dict, Optional, Sequence +from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import ( __write_header, @@ -21,19 +22,19 @@ def writer( - content: Dict[str, Any], - type_: MessageType, - path: str = "", + datasets: Sequence[PandasDataset], + type_: MessageType = MessageType.StructureSpecificDataSet, + output_path: str = "", prettyprint: bool = True, - header: Optional[Header] = None, + header: Optional[Header] = Header(), dimension_at_observation: Optional[Dict[str, str]] = None, ) -> Optional[str]: """This function writes a SDMX-ML file from the Message Content. Args: - content: The content to be written + datasets: The content to be written type_: The type of message to be written - path: The path to save the file + output_path: The path to save the file prettyprint: Prettyprint or not header: The header to be used (generated if None) dimension_at_observation: @@ -42,8 +43,7 @@ def writer( Returns: The XML string if path is empty, None otherwise """ - if header is None: - header = Header() + content = {dataset.short_urn: dataset for dataset in datasets} ss_namespaces = "" add_namespace_structure = False @@ -77,8 +77,6 @@ def writer( # Generating the header outfile += __write_header(header, prettyprint, add_namespace_structure) # Writing the content - if type_ == MessageType.Structure: - outfile += write_structures(content, prettyprint) if type_ == MessageType.StructureSpecificDataSet: outfile += write_data_structure_specific( content, dim_mapping, prettyprint @@ -88,10 +86,8 @@ def writer( outfile += get_end_message(type_, prettyprint) - if path == "": + if output_path == "": return outfile - with open(path, "w", encoding="UTF-8", errors="replace") as f: + with open(output_path, "w", encoding="UTF-8", errors="replace") as f: f.write(outfile) - - return None diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py new file mode 100644 index 00000000..a52a90a9 --- /dev/null +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -0,0 +1,27 @@ +from typing import Optional, Sequence, Dict + +from pysdmx.io.pd import PandasDataset +from pysdmx.model.message import Header + + +def write( + datasets: Sequence[PandasDataset], + output_path: str = "", + prettyprint: bool = True, + header: Optional[Header] = Header(), + dimension_at_observation: Optional[Dict[str, str]] = None, +) -> Optional[str]: + """Write data to SDMX-ML 2.1 Generic format. + + Args: + datasets: The datasets to be written. + output_path: The path to save the file. + prettyprint: Prettyprint or not. + header: The header to be used (generated if None). + dimension_at_observation: + The mapping between the dataset and the dimension at observation. + + Returns: + The XML string if path is empty, None otherwise. + """ + raise NotImplementedError("Not implemented yet.") \ No newline at end of file diff --git a/src/pysdmx/io/xml/sdmx21/writer/generic.py b/src/pysdmx/io/xml/sdmx21/writer/generic.py index dd7bfbb3..5c1b49ad 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/generic.py +++ b/src/pysdmx/io/xml/sdmx21/writer/generic.py @@ -1,20 +1,24 @@ # mypy: disable-error-code="union-attr" """Module for writing SDMX-ML 2.1 Generic data messages.""" -from typing import Any, Dict, List, Tuple +from typing import Any, Dict, List, Tuple, Sequence, Optional import pandas as pd +from pysdmx.errors import Invalid from pysdmx.io.pd import PandasDataset +from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import ( ABBR_GEN, ABBR_MSG, ALL_DIM, get_codes, get_structure, - writing_validation, + writing_validation, get_end_message, __write_header, create_namespaces, check_dimension_at_observation, + check_content_dataset, ) from pysdmx.io.xml.sdmx21.writer.config import CHUNKSIZE +from pysdmx.model.message import Header from pysdmx.util import parse_short_urn @@ -356,3 +360,56 @@ def __format_ser_str( out_element += f"{child2}{nl}" return out_element + + +def write( + datasets: Sequence[PandasDataset], + output_path: str = "", + prettyprint: bool = True, + header: Optional[Header] = Header(), + dimension_at_observation: Optional[Dict[str, str]] = None, +) -> Optional[str]: + """Write data to SDMX-ML 2.1 Generic format. + + Args: + datasets: The datasets to be written. + output_path: The path to save the file. + prettyprint: Prettyprint or not. + header: The header to be used (generated if None). + dimension_at_observation: + The mapping between the dataset and the dimension at observation. + + Returns: + The XML string if path is empty, None otherwise. + """ + if (not isinstance(datasets, Sequence) or not + all(isinstance(dataset, PandasDataset) for dataset in datasets)): + raise Invalid("Message Content must only contain a Dataset sequence.") + + ss_namespaces = "" + add_namespace_structure = False + type_ = MessageType.GenericDataSet + content = {dataset.short_urn: dataset for dataset in datasets} + + # Checking if we have datasets, + # we need to ensure we can write them correctly + check_content_dataset(content) + # Checking the dimension at observation mapping + dim_mapping = check_dimension_at_observation( + content, dimension_at_observation + ) + header.structure = dim_mapping + # Generating the initial tag with namespaces + outfile = create_namespaces(type_, ss_namespaces, prettyprint) + # Generating the header + outfile += __write_header(header, prettyprint, add_namespace_structure) + # Writing the content + outfile += write_data_generic(content, dim_mapping, prettyprint) + + outfile += get_end_message(type_, prettyprint) + + if output_path == "": + return outfile + + with open(output_path, "w", encoding="UTF-8", errors="replace") as f: + f.write(outfile) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 38c2d92c..4329c28a 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -1,8 +1,9 @@ """Module for writing metadata to XML files.""" from collections import OrderedDict -from typing import Any, Dict, Optional, Union +from typing import Any, Dict, Optional, Union, Sequence +from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.__parsing_config import ( AGENCIES, AGENCY_ID, @@ -52,9 +53,9 @@ ABBR_STR, MSG_CONTENT_PKG, __to_lower_camel_case, - add_indent, + add_indent, create_namespaces, __write_header, get_end_message, ) -from pysdmx.model import Codelist, Concept, DataType, Facets, Hierarchy +from pysdmx.model import Codelist, Concept, DataType, Facets, Hierarchy, ConceptScheme from pysdmx.model.__base import ( Agency, AnnotableArtefact, @@ -63,13 +64,14 @@ Item, MaintainableArtefact, NameableArtefact, - VersionableArtefact, + VersionableArtefact, ItemScheme, ) from pysdmx.model.dataflow import ( Component, DataStructureDefinition, - Role, + Role, Dataflow, ) +from pysdmx.model.message import Header from pysdmx.util import parse_item_urn, parse_short_urn, parse_urn ANNOTATION_WRITER = OrderedDict( @@ -87,6 +89,24 @@ Role.MEASURE: PRIM_MEASURE, } +STR_TYPE = Sequence[ + Union[ + ItemScheme, + Codelist, + ConceptScheme, + DataStructureDefinition, + Dataflow, + ], +] + +STR_DICT_TYPE_LIST = { + ItemScheme: "OrganisationSchemes", + Codelist: "Codelists", + ConceptScheme: "Concepts", + DataStructureDefinition: "DataStructures", + Dataflow: "Dataflows", +} + def __write_annotable(annotable: AnnotableArtefact, indent: str) -> str: """Writes the annotations to the XML file.""" @@ -611,3 +631,52 @@ def write_structures(content: Dict[str, Any], prettyprint: bool) -> str: outfile = outfile.replace("& ", "& ") return outfile + + +def write( + datasets: Sequence[STR_TYPE], + output_path: str = "", + prettyprint: bool = True, + header: Optional[Header] = Header(), + dimension_at_observation: Optional[Dict[str, str]] = None, +) -> Optional[str]: + """This function writes a SDMX-ML file from the Message Content. + + Args: + datasets: The content to be written + output_path: The path to save the file + prettyprint: Prettyprint or not + header: The header to be used (generated if None) + dimension_at_observation: + The mapping between the dataset and the dimension at observation + + Returns: + The XML string if path is empty, None otherwise + """ + type_ = MessageType.Structure + elements = {dataset.short_urn(): dataset for dataset in datasets} + + content = {} + for urn, element in elements.items(): + list_ = STR_DICT_TYPE_LIST[type(element)] + if list_ not in content: + content[list_] = {} + content[list_][urn] = element + + ss_namespaces = "" + add_namespace_structure = False + + # Generating the initial tag with namespaces + outfile = create_namespaces(type_, ss_namespaces, prettyprint) + # Generating the header + outfile += __write_header(header, prettyprint, add_namespace_structure) + # Writing the content + outfile += write_structures(content, prettyprint) + + outfile += get_end_message(type_, prettyprint) + + if output_path == "": + return outfile + + with open(output_path, "w", encoding="UTF-8", errors="replace") as f: + f.write(outfile) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py index 91266fa0..d3c968a1 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py @@ -1,19 +1,23 @@ # mypy: disable-error-code="union-attr" """Module for writing SDMX-ML 2.1 Structure Specific data messages.""" -from typing import Any, Dict, List +from typing import Any, Dict, List, Sequence, Optional import pandas as pd +from pysdmx.errors import Invalid from pysdmx.io.pd import PandasDataset +from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import ( ABBR_MSG, ALL_DIM, get_codes, get_structure, - writing_validation, + writing_validation, create_namespaces, __write_header, get_end_message, check_content_dataset, + check_dimension_at_observation, ) from pysdmx.io.xml.sdmx21.writer.config import CHUNKSIZE +from pysdmx.model.message import Header from pysdmx.util import parse_short_urn @@ -230,3 +234,67 @@ def __format_ser_str(data_info: Dict[Any, Any]) -> str: out = __generate_series_str() return out + + +def write( + datasets: Sequence[PandasDataset], + output_path: str = "", + prettyprint: bool = True, + header: Optional[Header] = Header(), + dimension_at_observation: Optional[Dict[str, str]] = None, +) -> Optional[str]: + """Write data to SDMX-ML 2.1 Generic format. + + Args: + datasets: The datasets to be written. + output_path: The path to save the file. + prettyprint: Prettyprint or not. + header: The header to be used (generated if None). + dimension_at_observation: + The mapping between the dataset and the dimension at observation. + + Returns: + The XML string if path is empty, None otherwise. + """ + if (not isinstance(datasets, Sequence) or not + all(isinstance(dataset, PandasDataset) for dataset in datasets)): + raise Invalid("Message Content must only contain a Dataset sequence.") + + ss_namespaces = "" + type_ = MessageType.StructureSpecificDataSet + content = {dataset.short_urn: dataset for dataset in datasets} + + # Checking if we have datasets, + # we need to ensure we can write them correctly + check_content_dataset(content) + # Checking the dimension at observation mapping + dim_mapping = check_dimension_at_observation( + content, dimension_at_observation + ) + header.structure = dim_mapping + add_namespace_structure = True + for i, (short_urn, dimension) in enumerate( + header.structure.items() + ): + ss_namespaces += ( + f'xmlns:ns{i + 1}="urn:sdmx:org.sdmx' + f".infomodel.datastructure.{short_urn}" + f':ObsLevelDim:{dimension}" ' + ) + + # Generating the initial tag with namespaces + outfile = create_namespaces(type_, ss_namespaces, prettyprint) + # Generating the header + outfile += __write_header(header, prettyprint, add_namespace_structure) + # Writing the content + outfile += write_data_structure_specific( + content, dim_mapping, prettyprint + ) + + outfile += get_end_message(type_, prettyprint) + + if output_path == "": + return outfile + + with open(output_path, "w", encoding="UTF-8", errors="replace") as f: + f.write(outfile) diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index 26ebdea8..4712ffce 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -5,12 +5,15 @@ import pysdmx from pysdmx.errors import Invalid, NotImplemented +from pysdmx.io.pd import PandasDataset from pysdmx.io.xml import read from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer import writer as write_xml -from pysdmx.model import Contact +from pysdmx.model import Contact, Codelist, ConceptScheme, Dataflow +from pysdmx.model.__base import ItemScheme from pysdmx.model.message import SubmissionResult -from pysdmx.model.vtl import Transformation +from pysdmx.model.vtl import Transformation, TransformationScheme + # Test parsing SDMX Registry Interface Submission Response @@ -48,10 +51,9 @@ def error_304_path(): def test_agency_scheme_read(agency_scheme_path): result = read(agency_scheme_path, validate=True) - assert "OrganisationSchemes" in result - agency_scheme = result["OrganisationSchemes"] - assert len(agency_scheme) == 1 - agency_sdmx = agency_scheme["SDMX:AGENCIES(1.0)"].items[0] + agency_scheme = result[0] + assert isinstance(agency_scheme, ItemScheme) + agency_sdmx = agency_scheme.items[0] assert agency_sdmx.id == "SDMX" assert agency_sdmx.name == "SDMX" @@ -59,10 +61,10 @@ def test_agency_scheme_read(agency_scheme_path): def test_code_list_read(codelist_path): result = read(codelist_path, validate=True) - assert "Codelists" in result - codelists = result["Codelists"] - assert len(codelists) == 5 - codelist_sdmx = codelists["SDMX:CL_UNIT_MULT(1.0)"] + assert len(result) == 5 + assert all(isinstance(item, Codelist) for item in result) + codelist_sdmx = result[-1] + assert isinstance(codelist_sdmx, Codelist) assert codelist_sdmx.id == "CL_UNIT_MULT" assert ( codelist_sdmx.name == "code list for the Unit Multiplier (UNIT_MULT)" @@ -74,26 +76,26 @@ def test_code_list_read(codelist_path): def test_item_scheme_read(item_scheme_path): result = read(item_scheme_path, validate=True) - assert "OrganisationSchemes" in result - assert "Codelists" in result - assert "Concepts" in result + assert any(isinstance(item, ItemScheme) for item in result) + assert any(isinstance(item, Codelist) for item in result) + assert any(isinstance(item, ConceptScheme) for item in result) # Agency Scheme (OrganisationSchemes) assertions - agency_scheme = result["OrganisationSchemes"] - assert len(agency_scheme) == 1 - agency_sdmx = agency_scheme["SDMX:AGENCIES(1.0)"].items[0] + # que pille el primer item scheme de la lista + agency_scheme = next(e for e in result if isinstance(e, ItemScheme)) + agency_sdmx = agency_scheme.items[0] assert agency_sdmx.id == "SDMX" assert agency_sdmx.name == "SDMX" - agency_uis = agency_scheme["SDMX:AGENCIES(1.0)"].items[2] + agency_uis = agency_scheme.items[2] assert agency_uis.id == "UIS" assert isinstance(agency_uis.contacts[0], Contact) assert agency_uis.contacts[0].emails == ["uis.datarequests@unesco.org"] # Codelist - codelists = result["Codelists"] + codelists = [cl for cl in result if isinstance(cl, Codelist)] assert len(codelists) == 5 - codelist_sdmx = codelists["SDMX:CL_UNIT_MULT(1.0)"] + codelist_sdmx = next(cl for cl in codelists if cl.id == "CL_UNIT_MULT") assert codelist_sdmx.id == "CL_UNIT_MULT" assert ( codelist_sdmx.name == "code list for the " @@ -103,9 +105,7 @@ def test_item_scheme_read(item_scheme_path): assert codelist_sdmx.items[0].name == "Units" # Concept - concepts = result["Concepts"] - assert len(concepts) == 1 - concept_scheme_sdmx = concepts["SDMX:CROSS_DOMAIN_CONCEPTS(1.0)"] + concept_scheme_sdmx = next(cs for cs in result if isinstance(cs, ConceptScheme)) assert concept_scheme_sdmx.id == "CROSS_DOMAIN_CONCEPTS" assert concept_scheme_sdmx.name == "SDMX Cross Domain Concept Scheme" assert concept_scheme_sdmx.items[0].id == "COLL_METHOD" @@ -118,15 +118,15 @@ def test_submission_result(submission_path): short_urn_1 = "DataStructure=BIS:BIS_DER(1.0)" short_urn_2 = "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" - assert short_urn_1 in result - submission_1 = result[short_urn_1] + assert any(short_urn_1 == sm.short_urn for sm in result) + submission_1 = next(sm for sm in result if sm.short_urn == short_urn_1) assert isinstance(submission_1, SubmissionResult) assert submission_1.action == "Append" assert submission_1.short_urn == short_urn_1 assert submission_1.status == "Success" - assert short_urn_2 in result - submission_2 = result[short_urn_2] + assert any(short_urn_2 == sm.short_urn for sm in result) + submission_2 = next(sm for sm in result if sm.short_urn == short_urn_2) assert isinstance(submission_2, SubmissionResult) assert submission_2.action == "Append" assert submission_2.short_urn == short_urn_2 @@ -148,7 +148,7 @@ def test_error_304(error_304_path): # def test_error_message_with_different_mode(error_304_path): # with pytest.raises(Invalid, match="Unable to parse sdmx file as"): -# reader(error_304_path, validate=True) +# read(error_304_path, validate=True) @pytest.mark.parametrize( @@ -165,7 +165,7 @@ def test_reading_validation(samples_folder, filename): data_path = samples_folder / filename result = read(data_path, validate=True) assert result is not None - data = result["DataStructure=BIS:BIS_DER(1.0)"].data + data = next(ds for ds in result if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data assert data.shape == (1000, 20) @@ -173,8 +173,8 @@ def test_reading_validation(samples_folder, filename): def test_dataflow(samples_folder): data_path = samples_folder / "dataflow.xml" result = read(data_path, validate=True) - assert "DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result - data_dataflow = result["DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)"].data + assert any(isinstance(item, PandasDataset) for item in result) + data_dataflow = next(df for df in result if df.short_urn == 'DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)').data num_rows = len(data_dataflow) num_columns = data_dataflow.shape[1] assert num_rows > 0 @@ -190,25 +190,25 @@ def test_dataflow(samples_folder): def test_structure_ref_urn(samples_folder): data_path = samples_folder / "structure_ref_urn.xml" result = read(data_path, validate=True) - assert "DataStructure=BIS:BIS_DER(1.0)" in result + assert any(e.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for e in result) def test_partial_datastructure(samples_folder): data_path = samples_folder / "partial_datastructure.xml" result = read(data_path, validate=True) - assert "DataStructure=BIS:BIS_DER(1.0)" in result["DataStructures"] + assert (e.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for e in result) def test_dataflow_structure(samples_folder): data_path = samples_folder / "dataflow_structure.xml" result = read(data_path, validate=True) - assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result["Dataflows"] + assert (e.short_urn == 'Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)' for e in result) def test_partial_dataflow_structure(samples_folder): data_path = samples_folder / "partial_dataflow_structure.xml" result = read(data_path, validate=True) - assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result["Dataflows"] + assert (e.short_urn == 'Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)' for e in result) def test_header_structure_provision_agrement(samples_folder): @@ -246,8 +246,8 @@ def test_gen_ser_no_atts(samples_folder): def test_ser_no_obs(samples_folder, filename): data_path = samples_folder / filename result = read(data_path, validate=True) - df = result["DataStructure=BIS:BIS_DER(1.0)"].data - assert df.shape == (1, 16) + data = next(ds for ds in result if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data + assert data.shape == (1, 16) @pytest.mark.parametrize( @@ -265,7 +265,8 @@ def test_chunks(samples_folder, filename): data_path = samples_folder / filename result = read(data_path, validate=True) assert result is not None - data = result["DataStructure=BIS:BIS_DER(1.0)"].data + assert any(ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for ds in result) + data = next(ds for ds in result if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data num_rows = len(data) num_columns = data.shape[1] assert num_rows > 0 @@ -280,15 +281,15 @@ def test_read_write_structure_specific_all(samples_folder): data_path = samples_folder / "str_all.xml" content = read(data_path, validate=True) assert content is not None - assert "DataStructure=BIS:BIS_DER(1.0)" in content - shape_read = content["DataStructure=BIS:BIS_DER(1.0)"].data.shape + assert any(ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for ds in content) + shape_read = next(ds for ds in content if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data.shape assert shape_read == (1000, 20) result = write_xml(content, MessageType.StructureSpecificDataSet) content_result = read(result, validate=True) # Check we read the same data assert content_result is not None - assert "DataStructure=BIS:BIS_DER(1.0)" in content_result - data_written = content_result["DataStructure=BIS:BIS_DER(1.0)"].data + assert any(ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for ds in content_result) + data_written = next(ds for ds in content_result if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data shape_written = data_written.shape assert shape_read == shape_written @@ -296,9 +297,10 @@ def test_read_write_structure_specific_all(samples_folder): def test_vtl_transformation_scheme(samples_folder): data_path = samples_folder / "transformation_scheme.xml" result = read(data_path, validate=True) - assert "Transformations" in result - assert len(result["Transformations"]) == 1 - transformation_scheme = result["Transformations"]["SDMX:TEST(1.0)"] + assert any(isinstance(ts, TransformationScheme) for ts in result) + assert len(result) == 1 + urn = 'urn:sdmx:org.sdmx.infomodel.transformation.TransformationScheme=SDMX:TEST(1.0)' + transformation_scheme = next(ts for ts in result if ts.urn == urn) assert transformation_scheme.id == "TEST" assert transformation_scheme.name == "TEST" assert transformation_scheme.description == "TEST Transformation Scheme" diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index 809d65a6..e02e2804 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -8,8 +8,10 @@ from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml import read, write_data from pysdmx.io.xml.enums import MessageType +from pysdmx.io.xml.sdmx21.reader import read_xml +from pysdmx.io.xml.sdmx21.writer.structure_specific import write as write_str_spec +from pysdmx.io.xml.sdmx21.writer.generic import write as write_gen from pysdmx.model import ( Code, Codelist, @@ -104,36 +106,37 @@ def content(): @pytest.mark.parametrize( ("message_type", "filename", "dimension_at_observation"), [ - # (MessageType.GenericDataSet, "gen_all.xml", {}), + (MessageType.GenericDataSet, "gen_all.xml", {}), (MessageType.StructureSpecificDataSet, "str_all.xml", None), ( MessageType.StructureSpecificDataSet, "str_ser.xml", {"DataStructure=MD:TEST(1.0)": "DIM1"}, ), - # ( - # MessageType.GenericDataSet, - # "gen_ser.xml", - # {"DataStructure=MD:TEST(1.0)": "DIM1"}, - # ), + ( + MessageType.GenericDataSet, + "gen_ser.xml", + {"DataStructure=MD:TEST(1.0)": "DIM1"}, + ), ], ) def test_data_write_read( header, content, message_type, filename, dimension_at_observation ): samples_folder_path = Path(__file__).parent / "samples" - # write_data from Dataset - result = write_data( - content, + # Write from Dataset + write = write_str_spec if message_type == MessageType.StructureSpecificDataSet else write_gen + result = write( + [dataset for dataset in content.values()], header=header, dimension_at_observation=dimension_at_observation, ) # Read the result to check for formal errors - result_msg = read(result, validate=True) + result_msg = read_xml(result, validate=True) assert "DataStructure=MD:TEST(1.0)" in result_msg # Read the reference to compare with the result infile, _ = process_string_to_read(samples_folder_path / filename) - reference_msg = read(infile, validate=True) + reference_msg = read_xml(infile, validate=True) result_data = result_msg["DataStructure=MD:TEST(1.0)"].data reference_data = reference_msg["DataStructure=MD:TEST(1.0)"].data @@ -166,7 +169,7 @@ def test_data_write_df( ): pysdmx.io.xml.sdmx21.writer.structure_specific.CHUNKSIZE = 20 pysdmx.io.xml.sdmx21.writer.generic.CHUNKSIZE = 20 - # write_data from DataFrame + # Write from DataFrame df = pd.DataFrame( { "DIM1": [1, 2, 3, 4, 5] * 10, @@ -179,15 +182,16 @@ def test_data_write_df( ds.structure.components.remove(ds.structure.components["ATT2"]) ds.data = df ds.attributes = {} - content["DataStructure=MD:TEST(1.0)"] = ds + content = [ds] - result = write_data( + write = write_str_spec if message_type == MessageType.StructureSpecificDataSet else write_gen + result = write( content, header=header, dimension_at_observation=dimension_at_observation, ) # Read the result to check for formal errors - result_msg = read(result, validate=True) + result_msg = read_xml(result, validate=True) assert "DataStructure=MD:TEST(1.0)" in result_msg result_data = result_msg["DataStructure=MD:TEST(1.0)"].data @@ -204,15 +208,16 @@ def test_invalid_content(): ) } with pytest.raises( - Invalid, match="Message Content must contain only Datasets." + Invalid, match="Message Content must only contain a Dataset sequence." ): - write_data(content) + write_str_spec(content) def test_invalid_dimension(content): dim_mapping = {"DataStructure=MD:TEST(1.0)": "DIM3"} + content = [dataset for dataset in content.values()] with pytest.raises(Invalid): - write_data( + write_str_spec( content, dimension_at_observation=dim_mapping, ) @@ -220,8 +225,9 @@ def test_invalid_dimension(content): def test_invalid_dimension_key(content): dim_mapping = {"DataStructure=AAA:TEST(1.0)": "DIM1"} + content = [dataset for dataset in content.values()] with pytest.raises(Invalid): - write_data( + write_str_spec( content, dimension_at_observation=dim_mapping, - ) + ) \ No newline at end of file diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index 061938a6..72dd3388 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -5,9 +5,10 @@ from pysdmx.errors import NotImplemented from pysdmx.io.input_processor import process_string_to_read -from pysdmx.io.xml import read, write_metadata +from pysdmx.io.xml import read from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.writer import Header, writer +from pysdmx.io.xml.sdmx21.writer.structure import write +from pysdmx.io.xml.sdmx21.writer.error import write as write_err from pysdmx.model import Agency, Code, Codelist, Concept, ConceptScheme, Facets from pysdmx.model.__base import Annotation from pysdmx.model.dataflow import ( @@ -17,6 +18,7 @@ DataStructureDefinition, Role, ) +from pysdmx.model.message import Header TEST_CS_URN = ( "urn:sdmx:org.sdmx.infomodel.conceptscheme." @@ -288,8 +290,9 @@ def dataflow(): def test_codelist(codelist_sample, complete_header, codelist): - result = write_metadata( - {"Codelists": {"CL_FREQ": codelist}}, + content = [codelist] + result = write( + content, header=complete_header, ) read(result, validate=False) @@ -298,8 +301,9 @@ def test_codelist(codelist_sample, complete_header, codelist): def test_concept(concept_sample, complete_header, concept): - result = write_metadata( - {"Concepts": {"FREQ": concept}}, + content = [concept] + result = write( + content, header=complete_header, ) @@ -307,19 +311,19 @@ def test_concept(concept_sample, complete_header, concept): def test_writer_empty(empty_sample, header): - result = write_metadata({}, prettyprint=True, header=header) + result = write([], prettyprint=True, header=header) assert result == empty_sample def test_writing_not_supported(): - with pytest.raises(NotImplemented): - writer({}, MessageType.Error, prettyprint=True) + with pytest.raises(NotImplementedError): + write_err({}) def test_write_to_file(empty_sample, tmpdir, header): file = tmpdir.join("output.txt") - result = write_metadata( - {}, + result = write( + [], output_path=file.strpath, prettyprint=True, header=header, @@ -329,7 +333,7 @@ def test_write_to_file(empty_sample, tmpdir, header): def test_writer_no_header(): - result: str = write_metadata({}, prettyprint=False) + result: str = write({}, prettyprint=False) assert "" in result assert "" in result assert "true" in result @@ -338,8 +342,9 @@ def test_writer_no_header(): def test_writer_datastructure(complete_header, datastructure): - result = write_metadata( - {"DataStructures": {"FREQ": datastructure}}, + content = [datastructure] + result = write( + content, header=complete_header, prettyprint=True, ) @@ -348,8 +353,9 @@ def test_writer_datastructure(complete_header, datastructure): def test_writer_partial_datastructure(complete_header, partial_datastructure): - result = write_metadata( - {"DataStructures": {"FREQ": partial_datastructure}}, + content = [partial_datastructure] + result = write( + content, header=complete_header, prettyprint=True, ) @@ -358,8 +364,9 @@ def test_writer_partial_datastructure(complete_header, partial_datastructure): def test_writer_dataflow(complete_header, dataflow): - result = write_metadata( - {"Dataflows": {"FREQ": dataflow}}, + content = [dataflow] + result = write( + content, header=complete_header, prettyprint=True, ) @@ -371,7 +378,8 @@ def test_read_write(read_write_sample, read_write_header): content, filetype = process_string_to_read(read_write_sample) assert filetype == "xml" read_result = read(content, validate=True) - write_result = write_metadata( + + write_result = write( read_result, header=read_write_header, prettyprint=True, @@ -381,15 +389,9 @@ def test_read_write(read_write_sample, read_write_header): def test_write_read(complete_header, datastructure, dataflow, concept_ds): - content = { - "Concepts": {"BIS:freq(1.0)": concept_ds}, - "DataStructures": { - "DataStructure=ESTAT:HLTH_RS_PRSHP1(7.0)": datastructure - }, - "Dataflows": {"Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)": dataflow}, - } - - write_result = write_metadata( + content = [concept_ds, datastructure, dataflow] + + write_result = write( content, header=complete_header, prettyprint=True, @@ -403,7 +405,7 @@ def test_write_read(complete_header, datastructure, dataflow, concept_ds): def test_bis_der(bis_sample, bis_header): content, _ = process_string_to_read(bis_sample) read_result = read(bis_sample, validate=True) - write_result = write_metadata( + write_result = write( read_result, header=bis_header, prettyprint=True, @@ -413,10 +415,10 @@ def test_bis_der(bis_sample, bis_header): def test_group_deletion(groups_sample, header): read_result = read(groups_sample, validate=True) - write_result = write_metadata( + write_result = write( read_result, header=header, prettyprint=True, ) assert "Groups" not in write_result - assert "DataStructure=BIS:BIS_DER(1.0)" in read_result["DataStructures"] + assert any("BIS:BIS_DER(1.0)" in e.short_urn() for e in read_result) From d197d4419ab8fb67ad0756dc1b56e0cc41ed0081 Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 13:39:09 +0100 Subject: [PATCH 28/62] Fixed XML read return typing. --- src/pysdmx/io/xml/__init__.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index d571f86f..fb200803 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -12,8 +12,7 @@ from pysdmx.model.message import SubmissionResult STR_TYPES = Union[ItemScheme, Codelist, ConceptScheme, DataStructureDefinition, Dataflow] -STR_DICT_TYPE = Dict[str, STR_TYPES] -ALL_TYPES = Union[STR_DICT_TYPE, PandasDataset] +ALL_TYPES = Union[STR_TYPES, PandasDataset] def read( From 4be753511e45c4a7de91fda82df704916c66193c Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 13:47:30 +0100 Subject: [PATCH 29/62] Fixed most ruff errors. --- src/pysdmx/io/xml/__init__.py | 13 ++-- src/pysdmx/io/xml/sdmx21/writer/__init__.py | 4 +- src/pysdmx/io/xml/sdmx21/writer/error.py | 9 ++- src/pysdmx/io/xml/sdmx21/writer/generic.py | 19 ++++-- src/pysdmx/io/xml/sdmx21/writer/structure.py | 40 +++++++---- .../xml/sdmx21/writer/structure_specific.py | 27 ++++---- tests/io/xml/sdmx21/reader/test_reader.py | 67 ++++++++++++++----- .../io/xml/sdmx21/writer/test_data_writing.py | 24 +++++-- .../sdmx21/writer/test_structures_writing.py | 4 +- 9 files changed, 140 insertions(+), 67 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index fb200803..cf72ff40 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -1,17 +1,20 @@ """XML readers and writers.""" + from pathlib import Path -from typing import Union, Dict, Sequence +from typing import Sequence, Union from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.sdmx21.reader import read_xml -from pysdmx.model import ConceptScheme, Codelist +from pysdmx.model import Codelist, ConceptScheme from pysdmx.model.__base import ItemScheme -from pysdmx.model.dataflow import DataStructureDefinition, Dataflow +from pysdmx.model.dataflow import Dataflow, DataStructureDefinition from pysdmx.model.message import SubmissionResult -STR_TYPES = Union[ItemScheme, Codelist, ConceptScheme, DataStructureDefinition, Dataflow] +STR_TYPES = Union[ + ItemScheme, Codelist, ConceptScheme, DataStructureDefinition, Dataflow +] ALL_TYPES = Union[STR_TYPES, PandasDataset] @@ -41,4 +44,4 @@ def read( else: raise Invalid( "Invalid file type", f"File type {filetype} is not supported." - ) \ No newline at end of file + ) diff --git a/src/pysdmx/io/xml/sdmx21/writer/__init__.py b/src/pysdmx/io/xml/sdmx21/writer/__init__.py index 104be9ef..b6ad5fa2 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__init__.py @@ -26,7 +26,7 @@ def writer( type_: MessageType = MessageType.StructureSpecificDataSet, output_path: str = "", prettyprint: bool = True, - header: Optional[Header] = Header(), + header: Optional[Header] = None, dimension_at_observation: Optional[Dict[str, str]] = None, ) -> Optional[str]: """This function writes a SDMX-ML file from the Message Content. @@ -47,6 +47,8 @@ def writer( ss_namespaces = "" add_namespace_structure = False + if header is None: + header = Header() # Checking if we have datasets, # we need to ensure we can write them correctly diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py index a52a90a9..c935e812 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/error.py +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -1,4 +1,4 @@ -from typing import Optional, Sequence, Dict +from typing import Dict, Optional, Sequence from pysdmx.io.pd import PandasDataset from pysdmx.model.message import Header @@ -8,7 +8,7 @@ def write( datasets: Sequence[PandasDataset], output_path: str = "", prettyprint: bool = True, - header: Optional[Header] = Header(), + header: Optional[Header] = None, dimension_at_observation: Optional[Dict[str, str]] = None, ) -> Optional[str]: """Write data to SDMX-ML 2.1 Generic format. @@ -24,4 +24,7 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - raise NotImplementedError("Not implemented yet.") \ No newline at end of file + if header is None: + header = Header() + + raise NotImplementedError("Not implemented yet.") diff --git a/src/pysdmx/io/xml/sdmx21/writer/generic.py b/src/pysdmx/io/xml/sdmx21/writer/generic.py index 5c1b49ad..52faf83f 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/generic.py +++ b/src/pysdmx/io/xml/sdmx21/writer/generic.py @@ -1,7 +1,7 @@ # mypy: disable-error-code="union-attr" """Module for writing SDMX-ML 2.1 Generic data messages.""" -from typing import Any, Dict, List, Tuple, Sequence, Optional +from typing import Any, Dict, List, Optional, Sequence, Tuple import pandas as pd @@ -12,10 +12,14 @@ ABBR_GEN, ABBR_MSG, ALL_DIM, + __write_header, + check_content_dataset, + check_dimension_at_observation, + create_namespaces, get_codes, + get_end_message, get_structure, - writing_validation, get_end_message, __write_header, create_namespaces, check_dimension_at_observation, - check_content_dataset, + writing_validation, ) from pysdmx.io.xml.sdmx21.writer.config import CHUNKSIZE from pysdmx.model.message import Header @@ -366,7 +370,7 @@ def write( datasets: Sequence[PandasDataset], output_path: str = "", prettyprint: bool = True, - header: Optional[Header] = Header(), + header: Optional[Header] = None, dimension_at_observation: Optional[Dict[str, str]] = None, ) -> Optional[str]: """Write data to SDMX-ML 2.1 Generic format. @@ -382,14 +386,17 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - if (not isinstance(datasets, Sequence) or not - all(isinstance(dataset, PandasDataset) for dataset in datasets)): + if not isinstance(datasets, Sequence) or not all( + isinstance(dataset, PandasDataset) for dataset in datasets + ): raise Invalid("Message Content must only contain a Dataset sequence.") ss_namespaces = "" add_namespace_structure = False type_ = MessageType.GenericDataSet content = {dataset.short_urn: dataset for dataset in datasets} + if header is None: + header = Header() # Checking if we have datasets, # we need to ensure we can write them correctly diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 4329c28a..41028483 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -1,7 +1,7 @@ """Module for writing metadata to XML files.""" from collections import OrderedDict -from typing import Any, Dict, Optional, Union, Sequence +from typing import Any, Dict, Optional, Sequence, Union from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.__parsing_config import ( @@ -53,23 +53,35 @@ ABBR_STR, MSG_CONTENT_PKG, __to_lower_camel_case, - add_indent, create_namespaces, __write_header, get_end_message, + __write_header, + add_indent, + create_namespaces, + get_end_message, +) +from pysdmx.model import ( + Codelist, + Concept, + ConceptScheme, + DataType, + Facets, + Hierarchy, ) -from pysdmx.model import Codelist, Concept, DataType, Facets, Hierarchy, ConceptScheme from pysdmx.model.__base import ( Agency, AnnotableArtefact, Contact, IdentifiableArtefact, Item, + ItemScheme, MaintainableArtefact, NameableArtefact, - VersionableArtefact, ItemScheme, + VersionableArtefact, ) from pysdmx.model.dataflow import ( Component, + Dataflow, DataStructureDefinition, - Role, Dataflow, + Role, ) from pysdmx.model.message import Header from pysdmx.util import parse_item_urn, parse_short_urn, parse_urn @@ -90,13 +102,13 @@ } STR_TYPE = Sequence[ - Union[ - ItemScheme, - Codelist, - ConceptScheme, - DataStructureDefinition, - Dataflow, - ], + Union[ + ItemScheme, + Codelist, + ConceptScheme, + DataStructureDefinition, + Dataflow, + ], ] STR_DICT_TYPE_LIST = { @@ -637,7 +649,7 @@ def write( datasets: Sequence[STR_TYPE], output_path: str = "", prettyprint: bool = True, - header: Optional[Header] = Header(), + header: Optional[Header] = None, dimension_at_observation: Optional[Dict[str, str]] = None, ) -> Optional[str]: """This function writes a SDMX-ML file from the Message Content. @@ -655,6 +667,8 @@ def write( """ type_ = MessageType.Structure elements = {dataset.short_urn(): dataset for dataset in datasets} + if header is None: + header = Header() content = {} for urn, element in elements.items(): diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py index d3c968a1..68695523 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py @@ -1,7 +1,7 @@ # mypy: disable-error-code="union-attr" """Module for writing SDMX-ML 2.1 Structure Specific data messages.""" -from typing import Any, Dict, List, Sequence, Optional +from typing import Any, Dict, List, Optional, Sequence import pandas as pd @@ -11,10 +11,14 @@ from pysdmx.io.xml.sdmx21.writer.__write_aux import ( ABBR_MSG, ALL_DIM, + __write_header, + check_content_dataset, + check_dimension_at_observation, + create_namespaces, get_codes, + get_end_message, get_structure, - writing_validation, create_namespaces, __write_header, get_end_message, check_content_dataset, - check_dimension_at_observation, + writing_validation, ) from pysdmx.io.xml.sdmx21.writer.config import CHUNKSIZE from pysdmx.model.message import Header @@ -240,7 +244,7 @@ def write( datasets: Sequence[PandasDataset], output_path: str = "", prettyprint: bool = True, - header: Optional[Header] = Header(), + header: Optional[Header] = None, dimension_at_observation: Optional[Dict[str, str]] = None, ) -> Optional[str]: """Write data to SDMX-ML 2.1 Generic format. @@ -256,13 +260,16 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - if (not isinstance(datasets, Sequence) or not - all(isinstance(dataset, PandasDataset) for dataset in datasets)): + if not isinstance(datasets, Sequence) or not all( + isinstance(dataset, PandasDataset) for dataset in datasets + ): raise Invalid("Message Content must only contain a Dataset sequence.") ss_namespaces = "" type_ = MessageType.StructureSpecificDataSet content = {dataset.short_urn: dataset for dataset in datasets} + if header is None: + header = Header() # Checking if we have datasets, # we need to ensure we can write them correctly @@ -273,9 +280,7 @@ def write( ) header.structure = dim_mapping add_namespace_structure = True - for i, (short_urn, dimension) in enumerate( - header.structure.items() - ): + for i, (short_urn, dimension) in enumerate(header.structure.items()): ss_namespaces += ( f'xmlns:ns{i + 1}="urn:sdmx:org.sdmx' f".infomodel.datastructure.{short_urn}" @@ -287,9 +292,7 @@ def write( # Generating the header outfile += __write_header(header, prettyprint, add_namespace_structure) # Writing the content - outfile += write_data_structure_specific( - content, dim_mapping, prettyprint - ) + outfile += write_data_structure_specific(content, dim_mapping, prettyprint) outfile += get_end_message(type_, prettyprint) diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index 4712ffce..870f83eb 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -9,12 +9,11 @@ from pysdmx.io.xml import read from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer import writer as write_xml -from pysdmx.model import Contact, Codelist, ConceptScheme, Dataflow +from pysdmx.model import Codelist, ConceptScheme, Contact from pysdmx.model.__base import ItemScheme from pysdmx.model.message import SubmissionResult from pysdmx.model.vtl import Transformation, TransformationScheme - # Test parsing SDMX Registry Interface Submission Response @@ -105,7 +104,9 @@ def test_item_scheme_read(item_scheme_path): assert codelist_sdmx.items[0].name == "Units" # Concept - concept_scheme_sdmx = next(cs for cs in result if isinstance(cs, ConceptScheme)) + concept_scheme_sdmx = next( + cs for cs in result if isinstance(cs, ConceptScheme) + ) assert concept_scheme_sdmx.id == "CROSS_DOMAIN_CONCEPTS" assert concept_scheme_sdmx.name == "SDMX Cross Domain Concept Scheme" assert concept_scheme_sdmx.items[0].id == "COLL_METHOD" @@ -165,7 +166,9 @@ def test_reading_validation(samples_folder, filename): data_path = samples_folder / filename result = read(data_path, validate=True) assert result is not None - data = next(ds for ds in result if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data + data = next( + ds for ds in result if ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" + ).data assert data.shape == (1000, 20) @@ -174,7 +177,11 @@ def test_dataflow(samples_folder): data_path = samples_folder / "dataflow.xml" result = read(data_path, validate=True) assert any(isinstance(item, PandasDataset) for item in result) - data_dataflow = next(df for df in result if df.short_urn == 'DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)').data + data_dataflow = next( + df + for df in result + if df.short_urn == "DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" + ).data num_rows = len(data_dataflow) num_columns = data_dataflow.shape[1] assert num_rows > 0 @@ -190,25 +197,31 @@ def test_dataflow(samples_folder): def test_structure_ref_urn(samples_folder): data_path = samples_folder / "structure_ref_urn.xml" result = read(data_path, validate=True) - assert any(e.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for e in result) + assert any(e.short_urn == "DataStructure=BIS:BIS_DER(1.0)" for e in result) def test_partial_datastructure(samples_folder): data_path = samples_folder / "partial_datastructure.xml" result = read(data_path, validate=True) - assert (e.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for e in result) + assert (e.short_urn == "DataStructure=BIS:BIS_DER(1.0)" for e in result) def test_dataflow_structure(samples_folder): data_path = samples_folder / "dataflow_structure.xml" result = read(data_path, validate=True) - assert (e.short_urn == 'Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)' for e in result) + assert ( + e.short_urn == "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" + for e in result + ) def test_partial_dataflow_structure(samples_folder): data_path = samples_folder / "partial_dataflow_structure.xml" result = read(data_path, validate=True) - assert (e.short_urn == 'Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)' for e in result) + assert ( + e.short_urn == "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" + for e in result + ) def test_header_structure_provision_agrement(samples_folder): @@ -246,7 +259,9 @@ def test_gen_ser_no_atts(samples_folder): def test_ser_no_obs(samples_folder, filename): data_path = samples_folder / filename result = read(data_path, validate=True) - data = next(ds for ds in result if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data + data = next( + ds for ds in result if ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" + ).data assert data.shape == (1, 16) @@ -265,8 +280,12 @@ def test_chunks(samples_folder, filename): data_path = samples_folder / filename result = read(data_path, validate=True) assert result is not None - assert any(ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for ds in result) - data = next(ds for ds in result if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data + assert any( + ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" for ds in result + ) + data = next( + ds for ds in result if ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" + ).data num_rows = len(data) num_columns = data.shape[1] assert num_rows > 0 @@ -281,15 +300,28 @@ def test_read_write_structure_specific_all(samples_folder): data_path = samples_folder / "str_all.xml" content = read(data_path, validate=True) assert content is not None - assert any(ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for ds in content) - shape_read = next(ds for ds in content if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data.shape + assert any( + ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" for ds in content + ) + shape_read = next( + ds + for ds in content + if ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" + ).data.shape assert shape_read == (1000, 20) result = write_xml(content, MessageType.StructureSpecificDataSet) content_result = read(result, validate=True) # Check we read the same data assert content_result is not None - assert any(ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)' for ds in content_result) - data_written = next(ds for ds in content_result if ds.short_urn == 'DataStructure=BIS:BIS_DER(1.0)').data + assert any( + ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" + for ds in content_result + ) + data_written = next( + ds + for ds in content_result + if ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" + ).data shape_written = data_written.shape assert shape_read == shape_written @@ -299,7 +331,8 @@ def test_vtl_transformation_scheme(samples_folder): result = read(data_path, validate=True) assert any(isinstance(ts, TransformationScheme) for ts in result) assert len(result) == 1 - urn = 'urn:sdmx:org.sdmx.infomodel.transformation.TransformationScheme=SDMX:TEST(1.0)' + urn = ("urn:sdmx:org.sdmx.infomodel.transformation." + "TransformationScheme=SDMX:TEST(1.0)") transformation_scheme = next(ts for ts in result if ts.urn == urn) assert transformation_scheme.id == "TEST" assert transformation_scheme.name == "TEST" diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index e02e2804..e1a67bbf 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -10,8 +10,10 @@ from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.reader import read_xml -from pysdmx.io.xml.sdmx21.writer.structure_specific import write as write_str_spec from pysdmx.io.xml.sdmx21.writer.generic import write as write_gen +from pysdmx.io.xml.sdmx21.writer.structure_specific import ( + write as write_str_spec, +) from pysdmx.model import ( Code, Codelist, @@ -125,9 +127,13 @@ def test_data_write_read( ): samples_folder_path = Path(__file__).parent / "samples" # Write from Dataset - write = write_str_spec if message_type == MessageType.StructureSpecificDataSet else write_gen + write = ( + write_str_spec + if message_type == MessageType.StructureSpecificDataSet + else write_gen + ) result = write( - [dataset for dataset in content.values()], + list(content.values()), header=header, dimension_at_observation=dimension_at_observation, ) @@ -184,7 +190,11 @@ def test_data_write_df( ds.attributes = {} content = [ds] - write = write_str_spec if message_type == MessageType.StructureSpecificDataSet else write_gen + write = ( + write_str_spec + if message_type == MessageType.StructureSpecificDataSet + else write_gen + ) result = write( content, header=header, @@ -215,7 +225,7 @@ def test_invalid_content(): def test_invalid_dimension(content): dim_mapping = {"DataStructure=MD:TEST(1.0)": "DIM3"} - content = [dataset for dataset in content.values()] + content = list(content.values()) with pytest.raises(Invalid): write_str_spec( content, @@ -225,9 +235,9 @@ def test_invalid_dimension(content): def test_invalid_dimension_key(content): dim_mapping = {"DataStructure=AAA:TEST(1.0)": "DIM1"} - content = [dataset for dataset in content.values()] + content = list(content.values()) with pytest.raises(Invalid): write_str_spec( content, dimension_at_observation=dim_mapping, - ) \ No newline at end of file + ) diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index 72dd3388..989d7b90 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -3,12 +3,10 @@ import pytest -from pysdmx.errors import NotImplemented from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.xml import read -from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.writer.structure import write from pysdmx.io.xml.sdmx21.writer.error import write as write_err +from pysdmx.io.xml.sdmx21.writer.structure import write from pysdmx.model import Agency, Code, Codelist, Concept, ConceptScheme, Facets from pysdmx.model.__base import Annotation from pysdmx.model.dataflow import ( From a78dca60c35a1277234d2776c12e9913e7864e6e Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 13:49:22 +0100 Subject: [PATCH 30/62] Fixed all ruff errors. --- src/pysdmx/io/xml/__init__.py | 2 +- src/pysdmx/io/xml/sdmx21/writer/__init__.py | 2 +- src/pysdmx/io/xml/sdmx21/writer/error.py | 1 + 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index cf72ff40..e380b749 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -34,7 +34,7 @@ def read( use_dataset_id=use_dataset_id, ) result = [] - for key, value in dict_.items(): + for _, value in dict_.items(): if isinstance(value, (PandasDataset, SubmissionResult)): result.append(value) else: diff --git a/src/pysdmx/io/xml/sdmx21/writer/__init__.py b/src/pysdmx/io/xml/sdmx21/writer/__init__.py index b6ad5fa2..8b5110df 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__init__.py @@ -13,7 +13,7 @@ ) from pysdmx.io.xml.sdmx21.writer.generic import write_data_generic from pysdmx.io.xml.sdmx21.writer.structure import ( - write_structures, + write_structures as write_structures, ) from pysdmx.io.xml.sdmx21.writer.structure_specific import ( write_data_structure_specific, diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py index c935e812..81c4bcad 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/error.py +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -1,3 +1,4 @@ +"""Module for writing SDMX-ML 2.1 Error messages.""" from typing import Dict, Optional, Sequence from pysdmx.io.pd import PandasDataset From 0a79372d85fb62c19bfe44c56a869f55612f4a57 Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 13:55:40 +0100 Subject: [PATCH 31/62] Fixed all mypy errors. --- src/pysdmx/io/xml/__init__.py | 2 +- src/pysdmx/io/xml/sdmx21/writer/__init__.py | 2 ++ src/pysdmx/io/xml/sdmx21/writer/generic.py | 4 +++- src/pysdmx/io/xml/sdmx21/writer/structure.py | 12 ++++++------ .../io/xml/sdmx21/writer/structure_specific.py | 4 +++- 5 files changed, 15 insertions(+), 9 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index e380b749..e62370b3 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -15,7 +15,7 @@ STR_TYPES = Union[ ItemScheme, Codelist, ConceptScheme, DataStructureDefinition, Dataflow ] -ALL_TYPES = Union[STR_TYPES, PandasDataset] +ALL_TYPES = Union[STR_TYPES, PandasDataset, SubmissionResult] def read( diff --git a/src/pysdmx/io/xml/sdmx21/writer/__init__.py b/src/pysdmx/io/xml/sdmx21/writer/__init__.py index 8b5110df..841e14a4 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__init__.py @@ -93,3 +93,5 @@ def writer( with open(output_path, "w", encoding="UTF-8", errors="replace") as f: f.write(outfile) + + return None diff --git a/src/pysdmx/io/xml/sdmx21/writer/generic.py b/src/pysdmx/io/xml/sdmx21/writer/generic.py index 52faf83f..56909b73 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/generic.py +++ b/src/pysdmx/io/xml/sdmx21/writer/generic.py @@ -386,7 +386,7 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - if not isinstance(datasets, Sequence) or not all( + if not all( isinstance(dataset, PandasDataset) for dataset in datasets ): raise Invalid("Message Content must only contain a Dataset sequence.") @@ -420,3 +420,5 @@ def write( with open(output_path, "w", encoding="UTF-8", errors="replace") as f: f.write(outfile) + + return None diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 41028483..56b509e4 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -101,15 +101,13 @@ Role.MEASURE: PRIM_MEASURE, } -STR_TYPE = Sequence[ - Union[ +STR_TYPES = Union[ ItemScheme, Codelist, ConceptScheme, DataStructureDefinition, Dataflow, - ], -] + ] STR_DICT_TYPE_LIST = { ItemScheme: "OrganisationSchemes", @@ -646,7 +644,7 @@ def write_structures(content: Dict[str, Any], prettyprint: bool) -> str: def write( - datasets: Sequence[STR_TYPE], + datasets: Sequence[STR_TYPES], output_path: str = "", prettyprint: bool = True, header: Optional[Header] = None, @@ -670,7 +668,7 @@ def write( if header is None: header = Header() - content = {} + content: Dict[str, Dict[str, STR_TYPES]] = {} for urn, element in elements.items(): list_ = STR_DICT_TYPE_LIST[type(element)] if list_ not in content: @@ -694,3 +692,5 @@ def write( with open(output_path, "w", encoding="UTF-8", errors="replace") as f: f.write(outfile) + + return None diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py index 68695523..649adf3e 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py @@ -260,7 +260,7 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - if not isinstance(datasets, Sequence) or not all( + if not all( isinstance(dataset, PandasDataset) for dataset in datasets ): raise Invalid("Message Content must only contain a Dataset sequence.") @@ -301,3 +301,5 @@ def write( with open(output_path, "w", encoding="UTF-8", errors="replace") as f: f.write(outfile) + + return None From 3b48f9e8dc4deb00ff48bbf717accb5f3c0ef518 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Fri, 10 Jan 2025 14:07:33 +0100 Subject: [PATCH 32/62] Updated poetry lock and used correct version of httpx. Updated tests with mocks. Signed-off-by: javier.hernandez --- poetry.lock | 9 ++-- pyproject.toml | 2 +- tests/io/samples/error.xml | 7 +++ tests/io/test_general_reader.py | 55 ++++++++++++++++++----- tests/io/xml/sdmx21/reader/test_reader.py | 8 ++-- 5 files changed, 61 insertions(+), 20 deletions(-) create mode 100644 tests/io/samples/error.xml diff --git a/poetry.lock b/poetry.lock index 7919dab5..035be51e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -342,13 +342,13 @@ trio = ["trio (>=0.22.0,<1.0)"] [[package]] name = "httpx" -version = "0.28.1" +version = "0.27.2" description = "The next generation HTTP client." optional = false python-versions = ">=3.8" files = [ - {file = "httpx-0.28.1-py3-none-any.whl", hash = "sha256:d909fcccc110f8c7faf814ca82a9a4d816bc5a6dbfea25d6591d6985b8ba59ad"}, - {file = "httpx-0.28.1.tar.gz", hash = "sha256:75e98c5f16b0f35b567856f597f06ff2270a374470a5c2392242528e3e3e42fc"}, + {file = "httpx-0.27.2-py3-none-any.whl", hash = "sha256:7bb2708e112d8fdd7829cd4243970f0c223274051cb35ee80c03301ee29a3df0"}, + {file = "httpx-0.27.2.tar.gz", hash = "sha256:f7c2be1d2f3c3c3160d441802406b206c2b76f5947b11115e6df10c6c65e66c2"}, ] [package.dependencies] @@ -356,6 +356,7 @@ anyio = "*" certifi = "*" httpcore = "==1.*" idna = "*" +sniffio = "*" [package.extras] brotli = ["brotli", "brotlicffi"] @@ -1593,4 +1594,4 @@ xml = ["lxml", "sdmxschemas", "xmltodict"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "060e04335150a024ecae7bd34e3b7f72656bfa0bb28919cc7bc9f63e4c523c50" +content-hash = "499aab102053055e9db584afe2f87e9e8bc72bee6caf0ffe688702dc16c7b181" diff --git a/pyproject.toml b/pyproject.toml index d7deffd4..f1cb9115 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,7 +23,7 @@ classifiers = [ [tool.poetry.dependencies] python = "^3.9" -httpx = "0.*" +httpx = "^0.27.0" msgspec = "0.*" lxml = {version = "5.*", optional = true} xmltodict = {version = "0.*", optional = true} diff --git a/tests/io/samples/error.xml b/tests/io/samples/error.xml new file mode 100644 index 00000000..608594cb --- /dev/null +++ b/tests/io/samples/error.xml @@ -0,0 +1,7 @@ + + + + Unable to parse value for key 'detail'. +Unknown parameter 'none'. Allowed parameters: full, allstubs, referencecompletestubs, allcompletestubs, referencepartial, referencestubs, referencecompletestubs, raw, partialraw + + \ No newline at end of file diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py index f7d3e5d6..260ed0ec 100644 --- a/tests/io/test_general_reader.py +++ b/tests/io/test_general_reader.py @@ -1,5 +1,6 @@ from pathlib import Path +import httpx import pytest from pysdmx.errors import Invalid, NotImplemented @@ -37,6 +38,14 @@ def data_csv_v1_path(): return str(base_path) +@pytest.fixture +def data_csv_v1_str(): + base_path = Path(__file__).parent / "samples" / "data_v1.csv" + with open(base_path, "r") as f: + text = f.read() + return text + + @pytest.fixture def structures_path(): base_path = Path(__file__).parent / "samples" / "datastructure.xml" @@ -49,6 +58,14 @@ def dataflow_path(): return str(base_path) +@pytest.fixture +def sdmx_error_str(): + base_path = Path(__file__).parent / "samples" / "error.xml" + with open(base_path, "r") as f: + text = f.read() + return text + + def test_read_sdmx_invalid_extension(): with pytest.raises(Invalid, match="Cannot parse input as SDMX."): read_sdmx(",,,,") @@ -72,25 +89,41 @@ def test_read_format_str(): assert str(SDMXFormat.SDMX_CSV_2_0) == "SDMX-CSV 2.0" -def test_read_url_invalid(): +def test_read_url_invalid(respx_mock): + url = "https://invalidurl.com" + respx_mock.get(url).mock( + return_value=httpx.Response( + 404, + content="", + ) + ) with pytest.raises( Invalid, match="Cannot retrieve a SDMX Message from URL" ): - read_sdmx("https://www.google.com/404") + read_sdmx(url) -def test_read_url_valid(): - url = "https://stats.bis.org/api/v1/datastructure/BIS/BIS_DER/1.0?references=none&detail=full" +def test_read_url_valid(respx_mock, data_csv_v1_str): + url = "http://validurl.com" + respx_mock.get(url).mock( + return_value=httpx.Response( + 200, + content=data_csv_v1_str, + ) + ) result = read_sdmx(url) - assert len(result.structures) == 1 + assert result.data is not None -def test_url_invalid_sdmx_error(): - url = "https://stats.bis.org/api/v1/datastructure/BIS/BIS_DER/1.0?references=none&detail=none" - with pytest.raises( - Invalid, - match="150:", - ): +def test_url_invalid_sdmx_error(respx_mock, sdmx_error_str): + url = "http://invalid_sdmx_error.com" + respx_mock.get(url).mock( + return_value=httpx.Response( + 404, + content=sdmx_error_str, + ) + ) + with pytest.raises(Invalid, match="150: "): read_sdmx(url) diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index a355acf2..9d86179c 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -404,16 +404,16 @@ def test_vtl_transformation_scheme(samples_folder): def test_estat_metadata(estat_metadata_path): - input_str, filetype = process_string_to_read(estat_metadata_path) - assert filetype == "xml" + input_str, sdmx_format = process_string_to_read(estat_metadata_path) + assert sdmx_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE result = read_xml(input_str, validate=True) assert len(result["Codelists"]) == 6 assert len(result["Concepts"]) == 1 def test_estat_data(estat_data_path): - input_str, filetype = process_string_to_read(estat_data_path) - assert filetype == "xml" + input_str, sdmx_format = process_string_to_read(estat_data_path) + assert sdmx_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC result = read_xml(input_str, validate=False) assert "DataFlow=ESTAT:NRG_BAL_S(1.0)" in result From 3ea84313e2779a03e8ad544fd46fe96fa2b47c5d Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 14:43:43 +0100 Subject: [PATCH 33/62] 100% code coverage. --- src/pysdmx/io/xml/__init__.py | 32 +++---- src/pysdmx/io/xml/sdmx21/reader/__init__.py | 7 -- src/pysdmx/io/xml/sdmx21/writer/__init__.py | 84 +------------------ .../io/xml/sdmx21/writer/__write_aux.py | 9 +- src/pysdmx/io/xml/sdmx21/writer/error.py | 9 +- src/pysdmx/io/xml/sdmx21/writer/generic.py | 12 ++- .../xml/sdmx21/writer/structure_specific.py | 13 ++- .../reader/samples/invalid_filetype.csv | 4 + tests/io/xml/sdmx21/reader/test_reader.py | 11 ++- .../io/xml/sdmx21/writer/test_data_writing.py | 32 +++++++ .../sdmx21/writer/test_structures_writing.py | 16 +++- 11 files changed, 91 insertions(+), 138 deletions(-) create mode 100644 tests/io/xml/sdmx21/reader/samples/invalid_filetype.csv diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index e62370b3..56272e98 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -26,22 +26,16 @@ def read( """Reads an SDMX-ML file and returns a dictionary with the parsed data.""" input_str, filetype = process_string_to_read(infile) - if filetype == "xml": - dict_ = read_xml( - input_str, - validate=validate, - mode=None, - use_dataset_id=use_dataset_id, - ) - result = [] - for _, value in dict_.items(): - if isinstance(value, (PandasDataset, SubmissionResult)): - result.append(value) - else: - for item in value.values(): - result.append(item) - return result - else: - raise Invalid( - "Invalid file type", f"File type {filetype} is not supported." - ) + dict_ = read_xml( + input_str, + validate=validate, + use_dataset_id=use_dataset_id, + ) + result = [] + for _, value in dict_.items(): + if isinstance(value, (PandasDataset, SubmissionResult)): + result.append(value) + else: + for item in value.values(): + result.append(item) + return result diff --git a/src/pysdmx/io/xml/sdmx21/reader/__init__.py b/src/pysdmx/io/xml/sdmx21/reader/__init__.py index 795b1913..36b4fa11 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__init__.py @@ -43,7 +43,6 @@ def read_xml( infile: str, validate: bool = True, - mode: Optional[MessageType] = None, use_dataset_id: bool = False, ) -> Dict[str, Any]: """Reads an SDMX-ML file and returns a dictionary with the parsed data. @@ -70,12 +69,6 @@ def read_xml( del infile - if mode is not None and MODES[mode.value] not in dict_info: - raise Invalid( - "Validation Error", - f"Unable to parse sdmx file as {MODES[mode.value]} file", - ) - result = __generate_sdmx_objects_from_xml(dict_info, use_dataset_id) return result diff --git a/src/pysdmx/io/xml/sdmx21/writer/__init__.py b/src/pysdmx/io/xml/sdmx21/writer/__init__.py index 841e14a4..8ef9d216 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__init__.py @@ -1,9 +1,4 @@ """SDMX 2.1 writer package.""" - -from typing import Dict, Optional, Sequence - -from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import ( __write_header, check_content_dataset, @@ -17,81 +12,4 @@ ) from pysdmx.io.xml.sdmx21.writer.structure_specific import ( write_data_structure_specific, -) -from pysdmx.model.message import Header - - -def writer( - datasets: Sequence[PandasDataset], - type_: MessageType = MessageType.StructureSpecificDataSet, - output_path: str = "", - prettyprint: bool = True, - header: Optional[Header] = None, - dimension_at_observation: Optional[Dict[str, str]] = None, -) -> Optional[str]: - """This function writes a SDMX-ML file from the Message Content. - - Args: - datasets: The content to be written - type_: The type of message to be written - output_path: The path to save the file - prettyprint: Prettyprint or not - header: The header to be used (generated if None) - dimension_at_observation: - The mapping between the dataset and the dimension at observation - - Returns: - The XML string if path is empty, None otherwise - """ - content = {dataset.short_urn: dataset for dataset in datasets} - - ss_namespaces = "" - add_namespace_structure = False - if header is None: - header = Header() - - # Checking if we have datasets, - # we need to ensure we can write them correctly - dim_mapping: Dict[str, str] = {} - if type_ in ( - MessageType.StructureSpecificDataSet, - MessageType.GenericDataSet, - ): - check_content_dataset(content) - # Checking the dimension at observation mapping - dim_mapping = check_dimension_at_observation( - content, dimension_at_observation - ) - header.structure = dim_mapping - if type_ == MessageType.StructureSpecificDataSet: - add_namespace_structure = True - for i, (short_urn, dimension) in enumerate( - header.structure.items() - ): - ss_namespaces += ( - f'xmlns:ns{i + 1}="urn:sdmx:org.sdmx' - f".infomodel.datastructure.{short_urn}" - f':ObsLevelDim:{dimension}" ' - ) - - # Generating the initial tag with namespaces - outfile = create_namespaces(type_, ss_namespaces, prettyprint) - # Generating the header - outfile += __write_header(header, prettyprint, add_namespace_structure) - # Writing the content - if type_ == MessageType.StructureSpecificDataSet: - outfile += write_data_structure_specific( - content, dim_mapping, prettyprint - ) - if type_ == MessageType.GenericDataSet: - outfile += write_data_generic(content, dim_mapping, prettyprint) - - outfile += get_end_message(type_, prettyprint) - - if output_path == "": - return outfile - - with open(output_path, "w", encoding="UTF-8", errors="replace") as f: - f.write(outfile) - - return None +) \ No newline at end of file diff --git a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py index 4c83c1d7..8c262d54 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py @@ -2,7 +2,7 @@ """Writer auxiliary functions.""" from collections import OrderedDict -from typing import Dict, List, Optional, Tuple +from typing import Dict, List, Optional, Tuple, Sequence from pysdmx.errors import Invalid, NotImplemented from pysdmx.io.pd import PandasDataset @@ -297,11 +297,10 @@ def get_codes( return series_codes, obs_codes -def check_content_dataset(content: Dict[str, PandasDataset]) -> None: +def check_content_dataset(content: Sequence[PandasDataset]) -> None: """Checks if the Message content is a dataset.""" - for dataset in content.values(): - if not isinstance(dataset, PandasDataset): - raise Invalid("Message Content must contain only Datasets.") + if not all(isinstance(dataset, PandasDataset) for dataset in content): + raise Invalid("Message Content must only contain a Dataset sequence.") def check_dimension_at_observation( diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py index 81c4bcad..9cf3f77b 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/error.py +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -2,6 +2,8 @@ from typing import Dict, Optional, Sequence from pysdmx.io.pd import PandasDataset +from pysdmx.io.xml.enums import MessageType +from pysdmx.io.xml.sdmx21.writer.__write_aux import __namespaces_from_type from pysdmx.model.message import Header @@ -11,7 +13,7 @@ def write( prettyprint: bool = True, header: Optional[Header] = None, dimension_at_observation: Optional[Dict[str, str]] = None, -) -> Optional[str]: +): """Write data to SDMX-ML 2.1 Generic format. Args: @@ -25,7 +27,4 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - if header is None: - header = Header() - - raise NotImplementedError("Not implemented yet.") + outfile = __namespaces_from_type(MessageType.Error) diff --git a/src/pysdmx/io/xml/sdmx21/writer/generic.py b/src/pysdmx/io/xml/sdmx21/writer/generic.py index 56909b73..5fcde3d3 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/generic.py +++ b/src/pysdmx/io/xml/sdmx21/writer/generic.py @@ -386,21 +386,19 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - if not all( - isinstance(dataset, PandasDataset) for dataset in datasets - ): - raise Invalid("Message Content must only contain a Dataset sequence.") ss_namespaces = "" add_namespace_structure = False type_ = MessageType.GenericDataSet + + # Checking if we have datasets, + # we need to ensure we can write them correctly + check_content_dataset(datasets) content = {dataset.short_urn: dataset for dataset in datasets} + if header is None: header = Header() - # Checking if we have datasets, - # we need to ensure we can write them correctly - check_content_dataset(content) # Checking the dimension at observation mapping dim_mapping = check_dimension_at_observation( content, dimension_at_observation diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py index 649adf3e..2bf10723 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py @@ -260,20 +260,17 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - if not all( - isinstance(dataset, PandasDataset) for dataset in datasets - ): - raise Invalid("Message Content must only contain a Dataset sequence.") - ss_namespaces = "" type_ = MessageType.StructureSpecificDataSet + + # Checking if we have datasets, + # we need to ensure we can write them correctly + check_content_dataset(datasets) content = {dataset.short_urn: dataset for dataset in datasets} + if header is None: header = Header() - # Checking if we have datasets, - # we need to ensure we can write them correctly - check_content_dataset(content) # Checking the dimension at observation mapping dim_mapping = check_dimension_at_observation( content, dimension_at_observation diff --git a/tests/io/xml/sdmx21/reader/samples/invalid_filetype.csv b/tests/io/xml/sdmx21/reader/samples/invalid_filetype.csv new file mode 100644 index 00000000..e16d97cc --- /dev/null +++ b/tests/io/xml/sdmx21/reader/samples/invalid_filetype.csv @@ -0,0 +1,4 @@ +STRUCTURE,STRUCTURE_ID,ACTION,DIM_A1B1,DIM_A2,DIM_A3C2,DIM_B2,DIM_C1,DIM_C3,MEAS_A1B1C1,MEAS_C2,ATTR_A1,ATTR_B1 +dataflow,ESTAT:DF_A(1.6.0),I,DIMVAL_A1B1,DIMVAL_A2,DIMVAL_A3C2,,,,"MEASVAL_A1B1C1",,"ATTRVAL_A1", +datastructure,ESTAT:DSD_B(1.7.0),I,DIMVAL_A1B1,,,DIMVAL_B2,,,"MEASVAL_A1B1C1",,,"ATTRVAL_B1" +dataTESTERROR,ESTAT:DPA_C(1.8.0),I,,,DIMVAL_A3C2,,DIMVAL_C1,DIMVAL_C3,"MEAS_A1B1C1","MEAS_C2",, \ No newline at end of file diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index 870f83eb..8e1f55c6 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -7,8 +7,7 @@ from pysdmx.errors import Invalid, NotImplemented from pysdmx.io.pd import PandasDataset from pysdmx.io.xml import read -from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.writer import writer as write_xml +from pysdmx.io.xml.sdmx21.writer.structure_specific import write from pysdmx.model import Codelist, ConceptScheme, Contact from pysdmx.model.__base import ItemScheme from pysdmx.model.message import SubmissionResult @@ -194,6 +193,12 @@ def test_dataflow(samples_folder): assert "DER_CURR_LEG1" in data_dataflow.columns +def test_invalid_filetype(samples_folder): + data_path = samples_folder / "invalid_filetype.csv" + with pytest.raises(Invalid): + read(data_path, validate=True) + + def test_structure_ref_urn(samples_folder): data_path = samples_folder / "structure_ref_urn.xml" result = read(data_path, validate=True) @@ -309,7 +314,7 @@ def test_read_write_structure_specific_all(samples_folder): if ds.short_urn == "DataStructure=BIS:BIS_DER(1.0)" ).data.shape assert shape_read == (1000, 20) - result = write_xml(content, MessageType.StructureSpecificDataSet) + result = write(content) content_result = read(result, validate=True) # Check we read the same data assert content_result is not None diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index e1a67bbf..9a599d5b 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -155,6 +155,33 @@ def test_data_write_read( ) +@pytest.mark.parametrize( + ("message_type", "filename", "dimension_at_observation"), + [ + (MessageType.GenericDataSet, "gen_all.xml", {}), + (MessageType.StructureSpecificDataSet, "str_all.xml", None) + ], +) +def test_write_data_file( + header, content, message_type, filename, dimension_at_observation +): + samples_folder_path = Path(__file__).parent / "samples" + output_file = Path(__file__).parent / "test_output_data.xml" + # Write from Dataset + write = ( + write_str_spec + if message_type == MessageType.StructureSpecificDataSet + else write_gen + ) + write( + list(content.values()), + output_path=output_file, + dimension_at_observation=dimension_at_observation, + ) + + assert output_file.exists() + + @pytest.mark.parametrize( ("message_type", "dimension_at_observation"), [ @@ -222,6 +249,11 @@ def test_invalid_content(): ): write_str_spec(content) + with pytest.raises( + Invalid, match="Message Content must only contain a Dataset sequence." + ): + write_gen(content) + def test_invalid_dimension(content): dim_mapping = {"DataStructure=MD:TEST(1.0)": "DIM3"} diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index 989d7b90..137a9d95 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -17,6 +17,7 @@ Role, ) from pysdmx.model.message import Header +from pysdmx.errors import NotImplemented TEST_CS_URN = ( "urn:sdmx:org.sdmx.infomodel.conceptscheme." @@ -308,13 +309,26 @@ def test_concept(concept_sample, complete_header, concept): assert result == concept_sample +def test_file_writing(concept_sample, complete_header, concept): + content = [concept] + output_path = Path(__file__).parent / "samples" / "test_output.xml" + write( + content, + output_path=output_path, + header=complete_header, + ) + + with open(output_path, "r") as f: + assert f.read() == concept_sample + + def test_writer_empty(empty_sample, header): result = write([], prettyprint=True, header=header) assert result == empty_sample def test_writing_not_supported(): - with pytest.raises(NotImplementedError): + with pytest.raises(NotImplemented): write_err({}) From 1544afbf24b13d3a1a16dd4895a5c091cd08e288 Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 14:47:27 +0100 Subject: [PATCH 34/62] Fixed all ruff errors. --- src/pysdmx/io/xml/__init__.py | 1 - src/pysdmx/io/xml/sdmx21/reader/__init__.py | 2 +- src/pysdmx/io/xml/sdmx21/writer/__init__.py | 14 -------------- src/pysdmx/io/xml/sdmx21/writer/__write_aux.py | 2 +- src/pysdmx/io/xml/sdmx21/writer/error.py | 2 +- src/pysdmx/io/xml/sdmx21/writer/generic.py | 2 -- .../io/xml/sdmx21/writer/structure_specific.py | 1 - tests/io/xml/sdmx21/writer/test_data_writing.py | 1 - .../xml/sdmx21/writer/test_structures_writing.py | 2 +- 9 files changed, 4 insertions(+), 23 deletions(-) diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index 56272e98..25df7fc8 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -3,7 +3,6 @@ from pathlib import Path from typing import Sequence, Union -from pysdmx.errors import Invalid from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.sdmx21.reader import read_xml diff --git a/src/pysdmx/io/xml/sdmx21/reader/__init__.py b/src/pysdmx/io/xml/sdmx21/reader/__init__.py index 36b4fa11..ebfcd1c6 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__init__.py @@ -1,6 +1,6 @@ """SDMX 2.1 XML reader package.""" -from typing import Any, Dict, Optional +from typing import Any, Dict import xmltodict diff --git a/src/pysdmx/io/xml/sdmx21/writer/__init__.py b/src/pysdmx/io/xml/sdmx21/writer/__init__.py index 8ef9d216..77ede9c3 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__init__.py @@ -1,15 +1 @@ """SDMX 2.1 writer package.""" -from pysdmx.io.xml.sdmx21.writer.__write_aux import ( - __write_header, - check_content_dataset, - check_dimension_at_observation, - create_namespaces, - get_end_message, -) -from pysdmx.io.xml.sdmx21.writer.generic import write_data_generic -from pysdmx.io.xml.sdmx21.writer.structure import ( - write_structures as write_structures, -) -from pysdmx.io.xml.sdmx21.writer.structure_specific import ( - write_data_structure_specific, -) \ No newline at end of file diff --git a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py index 8c262d54..daf775a8 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py @@ -2,7 +2,7 @@ """Writer auxiliary functions.""" from collections import OrderedDict -from typing import Dict, List, Optional, Tuple, Sequence +from typing import Dict, List, Optional, Sequence, Tuple from pysdmx.errors import Invalid, NotImplemented from pysdmx.io.pd import PandasDataset diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py index 9cf3f77b..e49c891a 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/error.py +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -27,4 +27,4 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - outfile = __namespaces_from_type(MessageType.Error) + __namespaces_from_type(MessageType.Error) diff --git a/src/pysdmx/io/xml/sdmx21/writer/generic.py b/src/pysdmx/io/xml/sdmx21/writer/generic.py index 5fcde3d3..fedf5656 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/generic.py +++ b/src/pysdmx/io/xml/sdmx21/writer/generic.py @@ -5,7 +5,6 @@ import pandas as pd -from pysdmx.errors import Invalid from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import ( @@ -386,7 +385,6 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - ss_namespaces = "" add_namespace_structure = False type_ = MessageType.GenericDataSet diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py index 2bf10723..953765e3 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py @@ -5,7 +5,6 @@ import pandas as pd -from pysdmx.errors import Invalid from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import ( diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index 9a599d5b..639da226 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -165,7 +165,6 @@ def test_data_write_read( def test_write_data_file( header, content, message_type, filename, dimension_at_observation ): - samples_folder_path = Path(__file__).parent / "samples" output_file = Path(__file__).parent / "test_output_data.xml" # Write from Dataset write = ( diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index 137a9d95..1e25c14f 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -3,6 +3,7 @@ import pytest +from pysdmx.errors import NotImplemented from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.xml import read from pysdmx.io.xml.sdmx21.writer.error import write as write_err @@ -17,7 +18,6 @@ Role, ) from pysdmx.model.message import Header -from pysdmx.errors import NotImplemented TEST_CS_URN = ( "urn:sdmx:org.sdmx.infomodel.conceptscheme." From ed6303a7c57351ac48cbc4af56eb726d8bb4801f Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Fri, 10 Jan 2025 14:47:34 +0100 Subject: [PATCH 35/62] Added validate flag to get_datasets. Signed-off-by: javier.hernandez --- src/pysdmx/io/reader.py | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 86aa75ea..a002515d 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -85,7 +85,9 @@ def read_sdmx( def get_datasets( - data: Union[str, Path, BytesIO], structure: Union[str, Path, BytesIO] + data: Union[str, Path, BytesIO], + structure: Union[str, Path, BytesIO], + validate: bool = True, ) -> Sequence[Dataset]: """Reads a data message and a structure message and returns a dataset. @@ -94,15 +96,16 @@ def get_datasets( structure: Path to file (pathlib.Path), URL, or string for the structure message. + validate: Validate the input file (only for SDMX-ML). Returns: A sequence of Datasets """ - data_msg = read_sdmx(data) + data_msg = read_sdmx(data, validate=validate) if not data_msg.data: raise Invalid("No data found in the data message") - structure_msg = read_sdmx(structure) + structure_msg = read_sdmx(structure, validate=validate) if structure_msg.structures is None: raise Invalid("No structure found in the structure message") From eb7038a7c95eefeb14a270640957d05cd0b702ba Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 14:49:52 +0100 Subject: [PATCH 36/62] Fixed mypy errors. Fixed all errors. --- src/pysdmx/io/xml/sdmx21/writer/error.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py index e49c891a..8490715b 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/error.py +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -13,7 +13,7 @@ def write( prettyprint: bool = True, header: Optional[Header] = None, dimension_at_observation: Optional[Dict[str, str]] = None, -): +) -> None: """Write data to SDMX-ML 2.1 Generic format. Args: From 2a4ceb31e93f70a4bd1fc667267bb7c3e6278c79 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Mateo=20de=20Lorenzo=20Argel=C3=A9s?= <160473799+mla2001@users.noreply.github.com> Date: Fri, 10 Jan 2025 15:03:16 +0100 Subject: [PATCH 37/62] Update test_reader.py --- tests/io/xml/sdmx21/reader/test_reader.py | 17 ----------------- 1 file changed, 17 deletions(-) diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index 8066a650..32cf307b 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -359,20 +359,3 @@ def test_vtl_transformation_scheme(samples_folder): assert isinstance(transformation, Transformation) assert transformation.id == "test_rule" assert transformation.full_expression == "DS_r <- DS_1 + 1;" - - -def test_estat_metadata(estat_metadata_path): - input_str, filetype = process_string_to_read(estat_metadata_path) - assert filetype == "xml" - result = read_xml(input_str, validate=True) - assert len(result["Codelists"]) == 6 - assert len(result["Concepts"]) == 1 - - -def test_estat_data(estat_data_path): - input_str, filetype = process_string_to_read(estat_data_path) - assert filetype == "xml" - - result = read_xml(input_str, validate=False) - assert "DataFlow=ESTAT:NRG_BAL_S(1.0)" in result - assert len(result["DataFlow=ESTAT:NRG_BAL_S(1.0)"].data) == 33 From c7f3d1463160b17c4e9cfc1e55d1137cb49c848b Mon Sep 17 00:00:00 2001 From: Mateo Date: Fri, 10 Jan 2025 15:09:24 +0100 Subject: [PATCH 38/62] Fixed all errors. --- src/pysdmx/io/xml/sdmx21/reader/__init__.py | 8 +------ .../io/xml/sdmx21/reader/metadata_read.py | 16 -------------- src/pysdmx/io/xml/sdmx21/writer/error.py | 1 + src/pysdmx/io/xml/sdmx21/writer/structure.py | 21 ++++++++----------- src/pysdmx/model/map.py | 4 +++- tests/io/xml/sdmx21/reader/test_reader.py | 6 ++++-- .../io/xml/sdmx21/writer/test_data_writing.py | 2 +- 7 files changed, 19 insertions(+), 39 deletions(-) diff --git a/src/pysdmx/io/xml/sdmx21/reader/__init__.py b/src/pysdmx/io/xml/sdmx21/reader/__init__.py index a5b7e20b..ebfcd1c6 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__init__.py @@ -119,13 +119,7 @@ def __parse_dataset(message_info: Dict[str, Any], mode: str) -> Dict[str, Any]: A dictionary of datasets. """ str_info = __extract_structure(message_info[HEADER][STRUCTURE]) - if DATASET not in message_info: - dataset_info = [] - for key in message_info: - if DATASET in key: - dataset_info = add_list(message_info[key]) - else: - dataset_info = add_list(message_info[DATASET]) + dataset_info = add_list(message_info[DATASET]) datasets = {} for dataset in dataset_info: ds = create_dataset(dataset, str_info, mode) diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py index e5345ef5..5a9be698 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py @@ -164,17 +164,6 @@ def __extract_text(self, element: Any) -> str: Returns: The text extracted from the element """ - if isinstance(element, list): - aux = {} - for language_element in element: - if ( - "lang" in language_element - and language_element["lang"] == "en" - ): - aux = language_element - if not aux: - aux = element[0] - element = aux if isinstance(element, dict) and "#text" in element: element = element["#text"] return element @@ -538,8 +527,6 @@ def __format_scheme( element = self.__format_agency(element) element = self.__format_validity(element) element = self.__format_vtl(element) - if "xmlns" in element: - del element["xmlns"] # Dynamic creation with specific class elements[full_id] = STRUCTURES_MAPPING[scheme](**element) @@ -577,9 +564,6 @@ def __format_schema( element = self.__format_validity(element) element = self.__format_components(element) - if "xmlns" in element: - del element["xmlns"] - if IS_EXTERNAL_REF in element: element[IS_EXTERNAL_REF_LOW] = element.pop(IS_EXTERNAL_REF) element[IS_EXTERNAL_REF_LOW] = ( diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py index 8490715b..7fb46f4c 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/error.py +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -1,4 +1,5 @@ """Module for writing SDMX-ML 2.1 Error messages.""" + from typing import Dict, Optional, Sequence from pysdmx.io.pd import PandasDataset diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 56b509e4..691a4226 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -102,12 +102,12 @@ } STR_TYPES = Union[ - ItemScheme, - Codelist, - ConceptScheme, - DataStructureDefinition, - Dataflow, - ] + ItemScheme, + Codelist, + ConceptScheme, + DataStructureDefinition, + Dataflow, +] STR_DICT_TYPE_LIST = { ItemScheme: "OrganisationSchemes", @@ -520,9 +520,9 @@ def __write_scheme(item_scheme: Any, indent: str, scheme: str) -> str: components = __write_components(item_scheme, add_indent(indent)) if scheme not in [DSD, DFW]: - data[ - "Attributes" - ] += f" isPartial={str(item_scheme.is_final).lower()!r}" + data["Attributes"] += ( + f" isPartial={str(item_scheme.is_final).lower()!r}" + ) outfile = "" @@ -648,7 +648,6 @@ def write( output_path: str = "", prettyprint: bool = True, header: Optional[Header] = None, - dimension_at_observation: Optional[Dict[str, str]] = None, ) -> Optional[str]: """This function writes a SDMX-ML file from the Message Content. @@ -657,8 +656,6 @@ def write( output_path: The path to save the file prettyprint: Prettyprint or not header: The header to be used (generated if None) - dimension_at_observation: - The mapping between the dataset and the dimension at observation Returns: The XML string if path is empty, None otherwise diff --git a/src/pysdmx/model/map.py b/src/pysdmx/model/map.py index 1d395608..b082de17 100644 --- a/src/pysdmx/model/map.py +++ b/src/pysdmx/model/map.py @@ -435,7 +435,9 @@ def __len__(self) -> int: """Return the number of mapping rules in the structure map.""" return len(self.maps) - def __getitem__(self, id_: str) -> Optional[ + def __getitem__( + self, id_: str + ) -> Optional[ Sequence[ Union[ ComponentMap, diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index 32cf307b..d8d67f6e 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -346,8 +346,10 @@ def test_vtl_transformation_scheme(samples_folder): result = read(data_path, validate=True) assert any(isinstance(ts, TransformationScheme) for ts in result) assert len(result) == 1 - urn = ("urn:sdmx:org.sdmx.infomodel.transformation." - "TransformationScheme=SDMX:TEST(1.0)") + urn = ( + "urn:sdmx:org.sdmx.infomodel.transformation." + "TransformationScheme=SDMX:TEST(1.0)" + ) transformation_scheme = next(ts for ts in result if ts.urn == urn) assert transformation_scheme.id == "TEST" assert transformation_scheme.name == "TEST" diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index 639da226..2b0f7675 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -159,7 +159,7 @@ def test_data_write_read( ("message_type", "filename", "dimension_at_observation"), [ (MessageType.GenericDataSet, "gen_all.xml", {}), - (MessageType.StructureSpecificDataSet, "str_all.xml", None) + (MessageType.StructureSpecificDataSet, "str_all.xml", None), ], ) def test_write_data_file( From 8341e65a72df70324c635f9e1fffd7f2e0cd781e Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Wed, 8 Jan 2025 15:34:58 +0100 Subject: [PATCH 39/62] Restored fixes for reading at best effort basis. Signed-off-by: javier.hernandez --- src/pysdmx/io/xml/sdmx21/reader/__init__.py | 8 +++++++- .../io/xml/sdmx21/reader/metadata_read.py | 16 ++++++++++++++++ tests/io/xml/sdmx21/reader/test_reader.py | 19 +++++++++++++++++++ 3 files changed, 42 insertions(+), 1 deletion(-) diff --git a/src/pysdmx/io/xml/sdmx21/reader/__init__.py b/src/pysdmx/io/xml/sdmx21/reader/__init__.py index ebfcd1c6..a5b7e20b 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__init__.py @@ -119,7 +119,13 @@ def __parse_dataset(message_info: Dict[str, Any], mode: str) -> Dict[str, Any]: A dictionary of datasets. """ str_info = __extract_structure(message_info[HEADER][STRUCTURE]) - dataset_info = add_list(message_info[DATASET]) + if DATASET not in message_info: + dataset_info = [] + for key in message_info: + if DATASET in key: + dataset_info = add_list(message_info[key]) + else: + dataset_info = add_list(message_info[DATASET]) datasets = {} for dataset in dataset_info: ds = create_dataset(dataset, str_info, mode) diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py index 5a9be698..e5345ef5 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py @@ -164,6 +164,17 @@ def __extract_text(self, element: Any) -> str: Returns: The text extracted from the element """ + if isinstance(element, list): + aux = {} + for language_element in element: + if ( + "lang" in language_element + and language_element["lang"] == "en" + ): + aux = language_element + if not aux: + aux = element[0] + element = aux if isinstance(element, dict) and "#text" in element: element = element["#text"] return element @@ -527,6 +538,8 @@ def __format_scheme( element = self.__format_agency(element) element = self.__format_validity(element) element = self.__format_vtl(element) + if "xmlns" in element: + del element["xmlns"] # Dynamic creation with specific class elements[full_id] = STRUCTURES_MAPPING[scheme](**element) @@ -564,6 +577,9 @@ def __format_schema( element = self.__format_validity(element) element = self.__format_components(element) + if "xmlns" in element: + del element["xmlns"] + if IS_EXTERNAL_REF in element: element[IS_EXTERNAL_REF_LOW] = element.pop(IS_EXTERNAL_REF) element[IS_EXTERNAL_REF_LOW] = ( diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index d8d67f6e..5c19b967 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -5,6 +5,7 @@ import pysdmx from pysdmx.errors import Invalid, NotImplemented +from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset from pysdmx.io.xml import read from pysdmx.io.xml.sdmx21.writer.structure_specific import write @@ -361,3 +362,21 @@ def test_vtl_transformation_scheme(samples_folder): assert isinstance(transformation, Transformation) assert transformation.id == "test_rule" assert transformation.full_expression == "DS_r <- DS_1 + 1;" + + +def test_estat_metadata(estat_metadata_path): + input_str, filetype = process_string_to_read(estat_metadata_path) + assert filetype == "xml" + result = read(input_str, validate=True) + codelists = [cl for cl in result if isinstance(cl, Codelist)] + assert len(codelists) == 6 + assert len(result) == 9 + + +def test_estat_data(estat_data_path): + input_str, filetype = process_string_to_read(estat_data_path) + assert filetype == "xml" + + result = read(input_str, validate=False) + assert isinstance(result[0].structure, str) + assert len(result[0].data) == 33 From 85bc5ea06de8fc8030d2d3f3742342b851222b65 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 08:27:48 +0100 Subject: [PATCH 40/62] Refactor on method names to make it private, signature of structures writing and removing redundancies Signed-off-by: javier.hernandez --- src/pysdmx/io/xml/sdmx21/writer/__write_aux.py | 4 ++-- src/pysdmx/io/xml/sdmx21/writer/generic.py | 10 ++++------ src/pysdmx/io/xml/sdmx21/writer/structure.py | 17 +++++++---------- .../io/xml/sdmx21/writer/structure_specific.py | 6 ++++-- 4 files changed, 17 insertions(+), 20 deletions(-) diff --git a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py index daf775a8..c52a0e33 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py @@ -74,7 +74,7 @@ def __namespaces_from_type(type_: MessageType) -> str: def create_namespaces( - type_: MessageType, ss_namespaces: str, prettyprint: bool = False + type_: MessageType, ss_namespaces: str = "", prettyprint: bool = False ) -> str: """Creates the namespaces for the XML file. @@ -153,7 +153,7 @@ def add_indent(indent: str) -> str: def __write_header( - header: Header, prettyprint: bool, add_namespace_structure: bool + header: Header, prettyprint: bool, add_namespace_structure: bool = False ) -> str: """Writes the Header part of the message. diff --git a/src/pysdmx/io/xml/sdmx21/writer/generic.py b/src/pysdmx/io/xml/sdmx21/writer/generic.py index fedf5656..72b05b69 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/generic.py +++ b/src/pysdmx/io/xml/sdmx21/writer/generic.py @@ -93,7 +93,7 @@ def __memory_optimization_writing( return outfile -def write_data_generic( +def __write_data_generic( datasets: Dict[str, PandasDataset], dim_mapping: Dict[str, str], prettyprint: bool = True, @@ -385,8 +385,6 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - ss_namespaces = "" - add_namespace_structure = False type_ = MessageType.GenericDataSet # Checking if we have datasets, @@ -403,11 +401,11 @@ def write( ) header.structure = dim_mapping # Generating the initial tag with namespaces - outfile = create_namespaces(type_, ss_namespaces, prettyprint) + outfile = create_namespaces(type_, prettyprint=prettyprint) # Generating the header - outfile += __write_header(header, prettyprint, add_namespace_structure) + outfile += __write_header(header, prettyprint) # Writing the content - outfile += write_data_generic(content, dim_mapping, prettyprint) + outfile += __write_data_generic(content, dim_mapping, prettyprint) outfile += get_end_message(type_, prettyprint) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 691a4226..a295e772 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -617,7 +617,7 @@ def __export_intern_data(data: Dict[str, Any], indent: str) -> str: return outfile -def write_structures(content: Dict[str, Any], prettyprint: bool) -> str: +def __write_structures(content: Dict[str, Any], prettyprint: bool) -> str: """Writes the structures to the XML file. Args: @@ -644,7 +644,7 @@ def write_structures(content: Dict[str, Any], prettyprint: bool) -> str: def write( - datasets: Sequence[STR_TYPES], + structures: Sequence[STR_TYPES], output_path: str = "", prettyprint: bool = True, header: Optional[Header] = None, @@ -652,7 +652,7 @@ def write( """This function writes a SDMX-ML file from the Message Content. Args: - datasets: The content to be written + structures: The content to be written output_path: The path to save the file prettyprint: Prettyprint or not header: The header to be used (generated if None) @@ -661,7 +661,7 @@ def write( The XML string if path is empty, None otherwise """ type_ = MessageType.Structure - elements = {dataset.short_urn(): dataset for dataset in datasets} + elements = {structure.short_urn(): structure for structure in structures} if header is None: header = Header() @@ -672,15 +672,12 @@ def write( content[list_] = {} content[list_][urn] = element - ss_namespaces = "" - add_namespace_structure = False - # Generating the initial tag with namespaces - outfile = create_namespaces(type_, ss_namespaces, prettyprint) + outfile = create_namespaces(type_, prettyprint=prettyprint) # Generating the header - outfile += __write_header(header, prettyprint, add_namespace_structure) + outfile += __write_header(header, prettyprint) # Writing the content - outfile += write_structures(content, prettyprint) + outfile += __write_structures(content, prettyprint) outfile += get_end_message(type_, prettyprint) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py index 953765e3..b480e2e4 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py @@ -53,7 +53,7 @@ def __memory_optimization_writing( return outfile -def write_data_structure_specific( +def __write_data_structure_specific( datasets: Dict[str, PandasDataset], dim_mapping: Dict[str, str], prettyprint: bool = True, @@ -288,7 +288,9 @@ def write( # Generating the header outfile += __write_header(header, prettyprint, add_namespace_structure) # Writing the content - outfile += write_data_structure_specific(content, dim_mapping, prettyprint) + outfile += __write_data_structure_specific( + content, dim_mapping, prettyprint + ) outfile += get_end_message(type_, prettyprint) From 53ac3e6489bca9083cc07dc31fdf3c800683fc46 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 09:22:55 +0100 Subject: [PATCH 41/62] Refactor on message to use Sequence[...] objects. Signed-off-by: javier.hernandez --- src/pysdmx/model/message.py | 149 ++++++++++++++---------------------- 1 file changed, 56 insertions(+), 93 deletions(-) diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index f20dbafa..786f48f9 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -14,7 +14,7 @@ import uuid from datetime import datetime, timezone -from typing import Any, Dict, Optional, Sequence, Union +from typing import Any, Dict, List, Optional, Sequence, Type, Union from msgspec import Struct @@ -39,74 +39,38 @@ class Header(Struct, kw_only=True): structure: Optional[Dict[str, str]] = None -# Prevent circular import by defining the words in the message module -ORGS = "OrganisationSchemes" -CLS = "Codelists" -CONCEPTS = "Concepts" -DSDS = "DataStructures" -DFWS = "Dataflows" - -MSG_CONTENT_PKG = { - ORGS: ItemScheme, - CLS: Codelist, - CONCEPTS: ConceptScheme, - DSDS: DataStructureDefinition, - DFWS: Dataflow, -} - - class Message(Struct, frozen=True): """Message class holds the content of SDMX Message. Attributes: - structures (dict): Content of the Structure Message. The keys are the - content type (e.g. ``OrganisationSchemes``, ``Codelists``, etc.), - and the values are the content objects (e.g. ``ItemScheme``, - ``Codelist``, etc.). - data (dict): Content of the Data Message. - The keys are the dataset short URNs, and the values - are the Dataset objects. + structures: Sequence of structure objects (ItemScheme, Schema). + They represent the contents of a Structure Message. + data: Sequence of Dataset objects. They represent the contents of a + SDMX Data Message in any format. """ - structures: Optional[ - Dict[ - str, - Dict[ - str, - Union[ - ItemScheme, - Codelist, - ConceptScheme, - DataStructureDefinition, - Dataflow, - ], - ], - ] + structures: Sequence[ + Union[ + ItemScheme, + DataStructureDefinition, + Dataflow, + ], ] = None - data: Optional[Dict[str, Dataset]] = None + data: Sequence[Dataset] = None def __post_init__(self) -> None: """Checks if the content is valid.""" if self.structures is not None: - for content_key, content_value in self.structures.items(): - if content_key not in MSG_CONTENT_PKG: + for obj_ in self.structures: + if not isinstance( + obj_, (ItemScheme, DataStructureDefinition, Dataflow) + ): raise Invalid( - f"Invalid content type: {content_key}", - "Check the docs for the proper " - "structure on structures.", + f"Invalid structure: " f"{type(obj_).__name__} ", + "Check the docs on structures.", ) - - for obj_ in content_value.values(): - if not isinstance(obj_, MSG_CONTENT_PKG[content_key]): - raise Invalid( - f"Invalid content value type: " - f"{type(obj_).__name__} " - f"for {content_key}", - "Check the docs for the proper " - "structure on structures.", - ) if self.data is not None: - for data_value in self.data.values(): + for data_value in self.data: if not isinstance(data_value, Dataset): raise Invalid( f"Invalid data type: " @@ -115,91 +79,90 @@ def __post_init__(self) -> None: "Check the docs for the proper structure on data.", ) - def __get_elements(self, type_: str) -> Dict[str, Any]: - """Returns the elements from content.""" - if self.structures is not None and type_ in self.structures: - return self.structures[type_] - raise NotFound( - f"No {type_} found in content", - f"Could not find any {type_} in content.", - ) - - def __get_single_structure(self, type_: str, short_urn: str) -> Any: + def __get_elements(self, type_: Type[Any]) -> List[Any]: + """Returns a list of elements of a specific type.""" + if self.structures is None: + return [] + structures = [] + for element in self.structures: + if isinstance(element, type_): + structures.append(element) + return structures + + def __get_single_structure(self, type_: Type[Any], short_urn: str) -> Any: """Returns a specific element from content.""" - if self.structures is not None and type_ not in self.structures: - raise NotFound( - f"No {type_} found.", - f"Could not find any {type_} in content.", - ) - - if self.structures is not None and short_urn in self.structures[type_]: - return self.structures[type_][short_urn] + for structure in self.structures: + if ( + structure.short_urn == short_urn # type: ignore[attr-defined] + and isinstance(structure, type_) + ): + return structure raise NotFound( f"No {type_} with Short URN {short_urn} found in content", "Could not find the requested element.", ) - def get_organisation_schemes(self) -> Dict[str, ItemScheme]: + def get_organisation_schemes(self) -> List[ItemScheme]: """Returns the OrganisationSchemes.""" - return self.__get_elements(ORGS) + return self.__get_elements(ItemScheme) - def get_codelists(self) -> Dict[str, Codelist]: + def get_codelists(self) -> List[Codelist]: """Returns the Codelists.""" - return self.__get_elements(CLS) + return self.__get_elements(Codelist) - def get_concept_schemes(self) -> Dict[str, ConceptScheme]: + def get_concept_schemes(self) -> List[ConceptScheme]: """Returns the Concept Schemes.""" - return self.__get_elements(CONCEPTS) + return self.__get_elements(ConceptScheme) def get_data_structure_definitions( self, - ) -> Dict[str, DataStructureDefinition]: + ) -> List[DataStructureDefinition]: """Returns the DataStructureDefinitions.""" - return self.__get_elements(DSDS) + return self.__get_elements(DataStructureDefinition) - def get_dataflows(self) -> Dict[str, Dataflow]: + def get_dataflows(self) -> List[Dataflow]: """Returns the Dataflows.""" - return self.__get_elements(DFWS) + return self.__get_elements(Dataflow) def get_organisation_scheme(self, short_urn: str) -> ItemScheme: """Returns a specific OrganisationScheme.""" - return self.__get_single_structure(ORGS, short_urn) + return self.__get_single_structure(ItemScheme, short_urn) def get_codelist(self, short_urn: str) -> Codelist: """Returns a specific Codelist.""" - return self.__get_single_structure(CLS, short_urn) + return self.__get_single_structure(Codelist, short_urn) def get_concept_scheme(self, short_urn: str) -> ConceptScheme: - """Returns a specific Concept.""" - return self.__get_single_structure(CONCEPTS, short_urn) + """Returns a specific Concept Scheme.""" + return self.__get_single_structure(ConceptScheme, short_urn) def get_data_structure_definition( self, short_urn: str ) -> DataStructureDefinition: """Returns a specific DataStructureDefinition.""" - return self.__get_single_structure(DSDS, short_urn) + return self.__get_single_structure(DataStructureDefinition, short_urn) def get_dataflow(self, short_urn: str) -> Dataflow: """Returns a specific Dataflow.""" - return self.__get_single_structure(DFWS, short_urn) + return self.__get_single_structure(Dataflow, short_urn) def get_datasets(self) -> Sequence[Dataset]: """Returns the Datasets.""" if self.data is not None: - return list(self.data.values()) + return self.data raise NotFound( - "No Datasets found in content", + "No Datasets found in data.", "Could not find any Datasets in content.", ) def get_dataset(self, short_urn: str) -> Dataset: """Returns a specific Dataset.""" if self.data is not None: - for dataset in self.data.values(): + for dataset in self.data: if dataset.short_urn == short_urn: return dataset raise NotFound( - f"No Dataset with Short URN {short_urn} found in content", + f"No Dataset with Short URN {short_urn} found in data.", "Could not find the requested Dataset.", ) From f78463cf02a43caf1213e339029995822196f7c8 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 10:03:10 +0100 Subject: [PATCH 42/62] Draft code on SDMX-ML 2.1 readers refactor to be consistent with writers file structure. Signed-off-by: javier.hernandez --- src/pysdmx/io/csv/sdmx10/reader/__init__.py | 8 +- src/pysdmx/io/csv/sdmx20/reader/__init__.py | 8 +- .../{__parsing_config.py => __tokens.py} | 52 ++- src/pysdmx/io/xml/sdmx21/reader/__data_aux.py | 131 +++++++ src/pysdmx/io/xml/sdmx21/reader/__init__.py | 134 +------ .../io/xml/sdmx21/reader/__parse_xml.py | 53 +++ src/pysdmx/io/xml/sdmx21/reader/__utils.py | 126 ------- src/pysdmx/io/xml/sdmx21/reader/data_read.py | 330 ------------------ .../xml/sdmx21/{ => reader}/doc_validation.py | 0 src/pysdmx/io/xml/sdmx21/reader/error.py | 25 ++ src/pysdmx/io/xml/sdmx21/reader/generic.py | 139 ++++++++ .../xml/sdmx21/reader/structure_specific.py | 109 ++++++ .../{metadata_read.py => structures.py} | 195 ++++++----- .../io/xml/sdmx21/reader/submission_reader.py | 25 +- src/pysdmx/io/xml/sdmx21/writer/structure.py | 2 +- 15 files changed, 623 insertions(+), 714 deletions(-) rename src/pysdmx/io/xml/sdmx21/{__parsing_config.py => __tokens.py} (86%) create mode 100644 src/pysdmx/io/xml/sdmx21/reader/__data_aux.py create mode 100644 src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py delete mode 100644 src/pysdmx/io/xml/sdmx21/reader/__utils.py delete mode 100644 src/pysdmx/io/xml/sdmx21/reader/data_read.py rename src/pysdmx/io/xml/sdmx21/{ => reader}/doc_validation.py (100%) create mode 100644 src/pysdmx/io/xml/sdmx21/reader/error.py create mode 100644 src/pysdmx/io/xml/sdmx21/reader/generic.py create mode 100644 src/pysdmx/io/xml/sdmx21/reader/structure_specific.py rename src/pysdmx/io/xml/sdmx21/reader/{metadata_read.py => structures.py} (89%) diff --git a/src/pysdmx/io/csv/sdmx10/reader/__init__.py b/src/pysdmx/io/csv/sdmx10/reader/__init__.py index 891efa3f..517a3b66 100644 --- a/src/pysdmx/io/csv/sdmx10/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx10/reader/__init__.py @@ -1,7 +1,7 @@ """SDMX 1.0 CSV reader module.""" from io import StringIO -from typing import Dict +from typing import Sequence import pandas as pd @@ -33,7 +33,7 @@ def __generate_dataset_from_sdmx_csv(data: pd.DataFrame) -> PandasDataset: ) -def read(infile: str) -> Dict[str, PandasDataset]: +def read(infile: str) -> Sequence[PandasDataset]: """Reads csv file and returns a payload dictionary. Args: @@ -85,13 +85,13 @@ def read(infile: str) -> Dict[str, PandasDataset]: # Create a payload dictionary to store datasets with the # different unique_ids as keys - payload = {} + payload = [] for df in list_df: # Generate a dataset from each subset of the DataFrame dataset = __generate_dataset_from_sdmx_csv(data=df) # Add the dataset to the payload dictionary - payload[dataset.short_urn] = dataset + payload.append(dataset) # Return the payload generated return payload diff --git a/src/pysdmx/io/csv/sdmx20/reader/__init__.py b/src/pysdmx/io/csv/sdmx20/reader/__init__.py index b3ab389b..ccc92783 100644 --- a/src/pysdmx/io/csv/sdmx20/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/reader/__init__.py @@ -1,7 +1,7 @@ """SDMX 2.0 CSV reader module.""" from io import StringIO -from typing import Dict +from typing import Sequence import pandas as pd @@ -78,7 +78,7 @@ def __generate_dataset_from_sdmx_csv(data: pd.DataFrame) -> PandasDataset: ) -def read(infile: str) -> Dict[str, PandasDataset]: +def read(infile: str) -> Sequence[PandasDataset]: """Reads csv file and returns a payload dictionary. Args: @@ -133,13 +133,13 @@ def read(infile: str) -> Dict[str, PandasDataset]: # Create a payload dictionary to store datasets with the # different unique_ids as keys - payload = {} + payload = [] for df in list_df: # Generate a dataset from each subset of the DataFrame dataset = __generate_dataset_from_sdmx_csv(data=df) # Add the dataset to the payload dictionary - payload[dataset.short_urn] = dataset + payload.append(dataset) # Return the payload generated return payload diff --git a/src/pysdmx/io/xml/sdmx21/__parsing_config.py b/src/pysdmx/io/xml/sdmx21/__tokens.py similarity index 86% rename from src/pysdmx/io/xml/sdmx21/__parsing_config.py rename to src/pysdmx/io/xml/sdmx21/__tokens.py index 645edeec..056b7804 100644 --- a/src/pysdmx/io/xml/sdmx21/__parsing_config.py +++ b/src/pysdmx/io/xml/sdmx21/__tokens.py @@ -1,24 +1,6 @@ """Parsing configuration for SDMX-ML 2.1 messages.""" -SCHEMA_ROOT = "http://www.sdmx.org/resources/sdmxml/schemas/v2_1/" -NAMESPACES_21 = { - SCHEMA_ROOT + "message": None, - SCHEMA_ROOT + "common": None, - SCHEMA_ROOT + "structure": None, - "http://www.w3.org/2001/XMLSchema-instance": "xsi", - "http://www.w3.org/XML/1998/namespace": None, - SCHEMA_ROOT + "data/structurespecific": None, - SCHEMA_ROOT + "data/generic": None, - SCHEMA_ROOT + "registry": None, - "http://schemas.xmlsoap.org/soap/envelope/": None, -} - -XML_OPTIONS = { - "process_namespaces": True, - "namespaces": NAMESPACES_21, - "dict_constructor": dict, - "attr_prefix": "", -} +from typing import Any, Dict, List # Common HEADER = "Header" @@ -220,3 +202,35 @@ CODELISTS_CM = "Codelists" CONCEPTS_CM = "Concepts" ORGANISATIONSCHEMES_CM = "OrganisationSchemes" + +VALID_FROM = "validFrom" +VALID_FROM_LOW = "valid_from" +VALID_TO = "validTo" +VALID_TO_LOW = "valid_to" + +# Structures +IS_EXTERNAL_REF = "isExternalReference" +IS_EXTERNAL_REF_LOW = "is_external_reference" +IS_FINAL = "isFinal" +IS_FINAL_LOW = "is_final" +IS_PARTIAL = "isPartial" +IS_PARTIAL_LOW = "is_partial" + + +# Contact +URIS = "uris" +EMAILS = "emails" +TELEPHONES = "telephones" +FAXES = "faxes" + +# Errors +missing_rep: Dict[str, List[Any]] = {"CON": [], "CS": [], "CL": []} +dsd_id: str = "" + +# Structure types +CLS = "Codelists" +DFW = "Dataflow" +DFWS = "Dataflows" +TRANSFORMATIONS = "Transformations" +TRANS_SCHEME = "TransformationScheme" +TRANSFORMATION = "Transformation" diff --git a/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py b/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py new file mode 100644 index 00000000..3a7e19f2 --- /dev/null +++ b/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py @@ -0,0 +1,131 @@ +from typing import Any, Dict, List, Optional, Sequence + +import pandas as pd + +from pysdmx.io.xml.sdmx21.__tokens import ( + AGENCY_ID, + DATASET, + DIM_OBS, + HEADER, + ID, + REF, + STR_USAGE, + STRID, + STRUCTURE, + URN, + VERSION, +) +from pysdmx.io.xml.utils import add_list +from pysdmx.model.dataset import Dataset +from pysdmx.util import parse_urn + +READING_CHUNKSIZE = 50000 + + +def __process_df( + test_list: List[Dict[str, Any]], + df: Optional[pd.DataFrame], + is_end: bool = False, +) -> Any: + if not is_end and len(test_list) <= READING_CHUNKSIZE: + return test_list, df + if df is not None: + df = pd.concat([df, pd.DataFrame(test_list)], ignore_index=True) + else: + df = pd.DataFrame(test_list) + + del test_list[:] + + return test_list, df + + +def __get_ids_from_structure(element: Dict[str, Any]) -> Any: + """Gets the agency_id, id and version of the structure. + + Args: + element: The data hold in the structure. + + Returns: + If the element is REF, agency_id, id and version may be returned. + If the element is URN, agency_id, id and version would be taken from + split function. + """ + if REF in element: + agency_id = element[REF][AGENCY_ID] + id_ = element[REF][ID] + version = element[REF][VERSION] + return agency_id, id_, version + else: + urn = parse_urn(element[URN]) + return urn.agency, urn.id, urn.version + + +def __get_elements_from_structure(structure: Dict[str, Any]) -> Any: + """Gets elements according to the xml type of file. + + Args: + structure: It can appear in two ways: + If structure is 'STRUCTURE', it will get + the ids related to STRUCTURE. + If structure is 'STR_USAGE', it will get + the ids related to STR_USAGE. + + Returns: + The ids contained in the structure will be returned. + + Raises: + NotImplemented: For Provision Agreement, as it is not implemented. + """ + if STRUCTURE in structure: + structure_type = "DataStructure" + tuple_ids = __get_ids_from_structure(structure[STRUCTURE]) + + elif STR_USAGE in structure: + structure_type = "DataFlow" + tuple_ids = __get_ids_from_structure(structure[STR_USAGE]) + else: + raise NotImplemented( + "Unsupported", "ProvisionAgrement not implemented" + ) + return tuple_ids + (structure_type,) + + +def __extract_structure(structure: Any) -> Any: + """Extracts elements contained in the structure.""" + structure = add_list(structure) + str_info = {} + for str_item in structure: + (agency_id, id_, version, structure_type) = ( + __get_elements_from_structure(str_item) + ) + + str_id = f"{agency_id}:{id_}({version})" + + str_info[str_item[STRID]] = { + DIM_OBS: str_item[DIM_OBS], + "unique_id": str_id, + "structure_type": structure_type, + } + + return str_info + + +def get_data_objects(dict_info: Dict[str, Any]) -> Sequence[Dataset]: + """Parse dataset. + + Args: + dict_info: Dict. + XML dictionary (xmltodict). + + Returns: + A dictionary of datasets. + """ + str_info = __extract_structure(dict_info[HEADER][STRUCTURE]) + if DATASET not in dict_info: + dataset_info = [] + for key in dict_info: + if DATASET in key: + dataset_info = add_list(dict_info[key]) + else: + dataset_info = add_list(dict_info[DATASET]) + return dataset_info, str_info diff --git a/src/pysdmx/io/xml/sdmx21/reader/__init__.py b/src/pysdmx/io/xml/sdmx21/reader/__init__.py index a5b7e20b..712b116a 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__init__.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__init__.py @@ -1,133 +1 @@ -"""SDMX 2.1 XML reader package.""" - -from typing import Any, Dict - -import xmltodict - -from pysdmx.errors import Invalid, NotImplemented -from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.__parsing_config import ( - DATASET, - ERROR, - ERROR_CODE, - ERROR_MESSAGE, - ERROR_TEXT, - GENERIC, - HEADER, - REG_INTERFACE, - STRSPE, - STRUCTURE, - STRUCTURES, - XML_OPTIONS, -) -from pysdmx.io.xml.sdmx21.doc_validation import validate_doc -from pysdmx.io.xml.sdmx21.reader.data_read import ( - __extract_structure, - create_dataset, -) -from pysdmx.io.xml.sdmx21.reader.metadata_read import StructureParser -from pysdmx.io.xml.sdmx21.reader.submission_reader import ( - handle_registry_interface, -) -from pysdmx.io.xml.utils import add_list - -MODES = { - MessageType.GenericDataSet.value: GENERIC, - MessageType.StructureSpecificDataSet.value: STRSPE, - MessageType.Structure.value: STRUCTURE, - MessageType.Submission.value: REG_INTERFACE, - MessageType.Error.value: ERROR, -} - - -def read_xml( - infile: str, - validate: bool = True, - use_dataset_id: bool = False, -) -> Dict[str, Any]: - """Reads an SDMX-ML file and returns a dictionary with the parsed data. - - Args: - infile: Path to file, URL, or string. - validate: If True, the XML data will be validated against the XSD. - mode: The type of message to parse. - use_dataset_id: If True, the dataset ID will be used as the key in the - resulting dictionary. - - Returns: - dict: Dictionary with the parsed data. - - Raises: - Invalid: If the SDMX data cannot be parsed. - """ - if validate: - validate_doc(infile) - dict_info = xmltodict.parse( - infile, - **XML_OPTIONS, # type: ignore[arg-type] - ) - - del infile - - result = __generate_sdmx_objects_from_xml(dict_info, use_dataset_id) - - return result - - -def __generate_sdmx_objects_from_xml( - dict_info: Dict[str, Any], use_dataset_id: bool = False -) -> Dict[str, Any]: - """Generates SDMX objects from the XML dictionary (xmltodict). - - Args: - dict_info: XML dictionary (xmltodict) - use_dataset_id: Use the dataset ID as the key in - the resulting dictionary - - Returns: - dict: Dictionary with the parsed data. - - Raises: - Invalid: If a SOAP error message is found. - NotImplemented: If the SDMX data cannot be parsed. - """ - if ERROR in dict_info: - code = dict_info[ERROR][ERROR_MESSAGE][ERROR_CODE] - text = dict_info[ERROR][ERROR_MESSAGE][ERROR_TEXT] - raise Invalid("Invalid", f"{code}: {text}") - if STRSPE in dict_info: - return __parse_dataset(dict_info[STRSPE], mode=STRSPE) - if GENERIC in dict_info: - return __parse_dataset(dict_info[GENERIC], mode=GENERIC) - if STRUCTURE in dict_info: - return StructureParser().format_structures( - dict_info[STRUCTURE][STRUCTURES] - ) - if REG_INTERFACE in dict_info: - return handle_registry_interface(dict_info) - raise NotImplemented("Unsupported", "Cannot parse input as SDMX.") - - -def __parse_dataset(message_info: Dict[str, Any], mode: str) -> Dict[str, Any]: - """Parse dataset. - - Args: - message_info: Dict. - mode: Str. - - Returns: - A dictionary of datasets. - """ - str_info = __extract_structure(message_info[HEADER][STRUCTURE]) - if DATASET not in message_info: - dataset_info = [] - for key in message_info: - if DATASET in key: - dataset_info = add_list(message_info[key]) - else: - dataset_info = add_list(message_info[DATASET]) - datasets = {} - for dataset in dataset_info: - ds = create_dataset(dataset, str_info, mode) - datasets[ds.short_urn] = ds - return datasets +"""SDMX 2.1 XML reader module.""" diff --git a/src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py b/src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py new file mode 100644 index 00000000..c8237446 --- /dev/null +++ b/src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py @@ -0,0 +1,53 @@ +from typing import Any, Dict + +import xmltodict + +from pysdmx.io.xml.sdmx21.reader.doc_validation import validate_doc + +SCHEMA_ROOT = "http://www.sdmx.org/resources/sdmxml/schemas/v2_1/" +NAMESPACES_21 = { + SCHEMA_ROOT + "message": None, + SCHEMA_ROOT + "common": None, + SCHEMA_ROOT + "structure": None, + "http://www.w3.org/2001/XMLSchema-instance": "xsi", + "http://www.w3.org/XML/1998/namespace": None, + SCHEMA_ROOT + "data/structurespecific": None, + SCHEMA_ROOT + "data/generic": None, + SCHEMA_ROOT + "registry": None, + "http://schemas.xmlsoap.org/soap/envelope/": None, +} + +XML_OPTIONS = { + "process_namespaces": True, + "namespaces": NAMESPACES_21, + "dict_constructor": dict, + "attr_prefix": "", +} + + +def parse_xml( + infile: str, + validate: bool = True, +) -> Dict[str, Any]: + """Reads an SDMX-ML file and returns a dictionary with the parsed data. + + Args: + infile: Path to file, URL, or string. + validate: If True, the XML data will be validated against the XSD. + + Returns: + dict: Dictionary with the parsed data. + + Raises: + Invalid: If the SDMX data cannot be parsed. + """ + if validate: + validate_doc(infile) + dict_info = xmltodict.parse( + infile, + **XML_OPTIONS, # type: ignore[arg-type] + ) + + del infile + + return dict_info diff --git a/src/pysdmx/io/xml/sdmx21/reader/__utils.py b/src/pysdmx/io/xml/sdmx21/reader/__utils.py deleted file mode 100644 index 7e44a8fa..00000000 --- a/src/pysdmx/io/xml/sdmx21/reader/__utils.py +++ /dev/null @@ -1,126 +0,0 @@ -"""Utility functions and constants for the parsers module.""" - -from typing import Any, Dict, List - -# Common -ID = "id" -AGENCY_ID = "agencyID" -XMLNS = "xmlns" -VERSION = "version" -VALID_FROM = "validFrom" -VALID_FROM_LOW = "valid_from" -VALID_TO = "validTo" -VALID_TO_LOW = "valid_to" - -# Structure Specific -VALUE = "Value" - -# Header -REF = "Ref" - -# Structures -# Common -NAME = "Name" -DESC = "Description" -STR = "Structure" -STR_URL = "structureURL" -STR_URL_LOW = "structure_url" -SER_URL = "serviceURL" -SER_URL_LOW = "service_url" -IS_EXTERNAL_REF = "isExternalReference" -IS_EXTERNAL_REF_LOW = "is_external_reference" -IS_FINAL = "isFinal" -IS_FINAL_LOW = "is_final" -IS_PARTIAL = "isPartial" -IS_PARTIAL_LOW = "is_partial" -# General -ANNOTATIONS = "Annotations" - -# Individual -CL = "Codelist" -CON = "Concept" - -# Dimension -DIM = "Dimension" - -# Measure -PRIM_MEASURE = "PrimaryMeasure" - -# Group Dimension -GROUP = "Group" -DIM_REF = "DimensionReference" - -# Constraints -KEY_VALUE = "KeyValue" - -# Annotation -ANNOTATION = "Annotation" -ANNOTATION_TITLE = "AnnotationTitle" -ANNOTATION_TYPE = "AnnotationType" -ANNOTATION_TEXT = "AnnotationText" -ANNOTATION_URL = "AnnotationURL" - -TITLE = "title" -TEXT = "text" -TYPE = "type" -URL = "url" -URN = "urn" - -# Facets -FACETS = "Facets" -TEXT_TYPE = "textType" -TEXT_TYPE_LOW = "text_type" - -# Contact -CONTACT = "Contact" -DEPARTMENT = "Department" -ROLE = "Role" -URIS = "uris" -EMAILS = "emails" -TELEPHONES = "telephones" -FAXES = "faxes" -URI = "URI" -EMAIL = "Email" -X400 = "X400" -TELEPHONE = "Telephone" -FAX = "Fax" - -# Extras -AGENCY = "Agency" -PAR_ID = "maintainableParentID" -PAR_VER = "maintainableParentVersion" - -# Errors -missing_rep: Dict[str, List[Any]] = {"CON": [], "CS": [], "CL": []} -dsd_id: str = "" - -# Structure types -AGENCIES = "AgencyScheme" -ORGS = "OrganisationSchemes" -CLS = "Codelists" -CONCEPTS = "Concepts" -CS = "ConceptScheme" -CODE = "Code" -DFW = "Dataflow" -DFWS = "Dataflows" -DSD = "DataStructure" -DSDS = "DataStructures" -TRANSFORMATIONS = "Transformations" -TRANS_SCHEME = "TransformationScheme" -TRANSFORMATION = "Transformation" - -FacetType = { - "minLength": "min_length", - "maxLength": "max_length", - "minValue": "min_value", - "maxValue": "max_value", - "startValue": "start_value", - "endValue": "end_value", - "interval": "interval", - "timeInterval": "time_interval", - "decimals": "decimals", - "pattern": "pattern", - "startTime": "start_time", - "endTime": "end_time", - "isSequence": "is_sequence", -} diff --git a/src/pysdmx/io/xml/sdmx21/reader/data_read.py b/src/pysdmx/io/xml/sdmx21/reader/data_read.py deleted file mode 100644 index 027c7865..00000000 --- a/src/pysdmx/io/xml/sdmx21/reader/data_read.py +++ /dev/null @@ -1,330 +0,0 @@ -"""Module that holds the necessary functions to read xml files.""" - -import itertools -from typing import Any, Dict, List, Optional - -import numpy as np -import pandas as pd - -from pysdmx.errors import NotFound, NotImplemented -from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.sdmx21.__parsing_config import ( - AGENCY_ID, - ATTRIBUTES, - DIM_OBS, - GROUP, - ID, - OBS, - OBS_DIM, - OBSKEY, - OBSVALUE, - REF, - SERIES, - SERIESKEY, - STR_USAGE, - STRID, - STRREF, - STRSPE, - STRUCTURE, - URN, - VALUE, - VERSION, - exc_attributes, -) -from pysdmx.io.xml.utils import add_list -from pysdmx.util import parse_urn - -READING_CHUNKSIZE = 50000 - - -def __get_element_to_list(data: Dict[str, Any], mode: Any) -> Dict[str, Any]: - obs = {} - data[mode][VALUE] = add_list(data[mode][VALUE]) - for k in data[mode][VALUE]: - obs[k[ID]] = k[VALUE.lower()] - return obs - - -def __process_df( - test_list: List[Dict[str, Any]], - df: Optional[pd.DataFrame], - is_end: bool = False, -) -> Any: - if not is_end and len(test_list) <= READING_CHUNKSIZE: - return test_list, df - if df is not None: - df = pd.concat([df, pd.DataFrame(test_list)], ignore_index=True) - else: - df = pd.DataFrame(test_list) - - del test_list[:] - - return test_list, df - - -def __reading_generic_series(dataset: Dict[str, Any]) -> pd.DataFrame: - # Generic Series - test_list = [] - df = None - dataset[SERIES] = add_list(dataset[SERIES]) - for series in dataset[SERIES]: - keys = {} - # Series Keys - series[SERIESKEY][VALUE] = add_list(series[SERIESKEY][VALUE]) - for v in series[SERIESKEY][VALUE]: - keys[v[ID]] = v[VALUE.lower()] - if ATTRIBUTES in series: - series[ATTRIBUTES][VALUE] = add_list(series[ATTRIBUTES][VALUE]) - for v in series[ATTRIBUTES][VALUE]: - keys[v[ID]] = v[VALUE.lower()] - if OBS in series: - series[OBS] = add_list(series[OBS]) - - for data in series[OBS]: - obs = { - OBS_DIM: data[OBS_DIM][VALUE.lower()], - OBSVALUE.upper(): data[OBSVALUE][VALUE.lower()], - } - if ATTRIBUTES in data: - obs = { - **obs, - **__get_element_to_list(data, mode=ATTRIBUTES), - } - test_list.append({**keys, **obs}) - else: - test_list.append(keys) - test_list, df = __process_df(test_list, df) - - test_list, df = __process_df(test_list, df, is_end=True) - - return df - - -def __reading_generic_all(dataset: Dict[str, Any]) -> pd.DataFrame: - # Generic All Dimensions - test_list = [] - df = None - dataset[OBS] = add_list(dataset[OBS]) - for data in dataset[OBS]: - obs: Dict[str, Any] = {} - obs = { - **obs, - **__get_element_to_list(data, mode=OBSKEY), - OBSVALUE.upper(): data[OBSVALUE][VALUE.lower()], - } - if ATTRIBUTES in data: - obs = {**obs, **__get_element_to_list(data, mode=ATTRIBUTES)} - test_list.append({**obs}) - test_list, df = __process_df(test_list, df) - - test_list, df = __process_df(test_list, df, is_end=True) - - return df - - -def __reading_str_series(dataset: Dict[str, Any]) -> pd.DataFrame: - # Structure Specific Series - test_list = [] - df = None - dataset[SERIES] = add_list(dataset[SERIES]) - for data in dataset[SERIES]: - keys = dict(itertools.islice(data.items(), len(data))) - if OBS in data: - del keys[OBS] - data[OBS] = add_list(data[OBS]) - for j in data[OBS]: - test_list.append({**keys, **j}) - else: - test_list.append(keys) - test_list, df = __process_df(test_list, df) - - test_list, df = __process_df(test_list, df, is_end=True) - - return df - - -def __reading_group_data(dataset: Dict[str, Any]) -> pd.DataFrame: - # Structure Specific Group Data - test_list = [] - df = None - dataset[GROUP] = add_list(dataset[GROUP]) - for data in dataset[GROUP]: - test_list.append(dict(data.items())) - test_list, df = __process_df(test_list, df) - test_list, df = __process_df(test_list, df, is_end=True) - - cols_to_delete = [x for x in df.columns if ":type" in x] - for x in cols_to_delete: - del df[x] - - df = df.drop_duplicates(keep="first").reset_index(drop=True) - - return df - - -def __get_at_att_str(dataset: Dict[str, Any]) -> Dict[str, Any]: - """Gets the elements of the dataset if it is Structure Specific Data.""" - return {k: dataset[k] for k in dataset if k not in exc_attributes} - - -def __get_at_att_gen(dataset: Dict[str, Any]) -> Dict[str, Any]: - """Gets all the elements if it is Generic data.""" - attached_attributes: Dict[str, Any] = {} - if ATTRIBUTES not in dataset: - return attached_attributes - dataset[ATTRIBUTES][VALUE] = add_list(dataset[ATTRIBUTES][VALUE]) - for k in dataset[ATTRIBUTES][VALUE]: - attached_attributes[k[ID]] = k[VALUE.lower()] - return attached_attributes - - -def __get_ids_from_structure(element: Dict[str, Any]) -> Any: - """Gets the agency_id, id and version of the structure. - - Args: - element: The data hold in the structure. - - Returns: - If the element is REF, agency_id, id and version may be returned. - If the element is URN, agency_id, id and version would be taken from - split function. - """ - if REF in element: - agency_id = element[REF][AGENCY_ID] - id_ = element[REF][ID] - version = element[REF][VERSION] - return agency_id, id_, version - else: - urn = parse_urn(element[URN]) - return urn.agency, urn.id, urn.version - - -def __get_elements_from_structure(structure: Dict[str, Any]) -> Any: - """Gets elements according to the xml type of file. - - Args: - structure: It can appear in two ways: - If structure is 'STRUCTURE', it will get - the ids related to STRUCTURE. - If structure is 'STR_USAGE', it will get - the ids related to STR_USAGE. - - Returns: - The ids contained in the structure will be returned. - - Raises: - NotImplemented: For Provision Agreement, as it is not implemented. - """ - if STRUCTURE in structure: - structure_type = "DataStructure" - tuple_ids = __get_ids_from_structure(structure[STRUCTURE]) - - elif STR_USAGE in structure: - structure_type = "DataFlow" - tuple_ids = __get_ids_from_structure(structure[STR_USAGE]) - else: - raise NotImplemented( - "Unsupported", "ProvisionAgrement not implemented" - ) - return tuple_ids + (structure_type,) - - -def __extract_structure(structure: Any) -> Any: - """Extracts elements contained in the structure.""" - structure = add_list(structure) - str_info = {} - for str_item in structure: - (agency_id, id_, version, structure_type) = ( - __get_elements_from_structure(str_item) - ) - - str_id = f"{agency_id}:{id_}({version})" - - str_info[str_item[STRID]] = { - DIM_OBS: str_item[DIM_OBS], - "unique_id": str_id, - "structure_type": structure_type, - } - - return str_info - - -def __parse_structure_specific_data( - dataset: Dict[str, Any], structure_info: Dict[str, Any] -) -> PandasDataset: - attached_attributes = __get_at_att_str(dataset) - - # Parsing data - if SERIES in dataset: - # Structure Specific Series - df = __reading_str_series(dataset) - if GROUP in dataset: - df_group = __reading_group_data(dataset) - common_columns = list( - set(df.columns).intersection(set(df_group.columns)) - ) - df = pd.merge(df, df_group, on=common_columns, how="left") - else: - dataset[OBS] = add_list(dataset[OBS]) - # Structure Specific All dimensions - df = pd.DataFrame(dataset[OBS]).replace(np.nan, "") - - urn = f"{structure_info['structure_type']}={structure_info['unique_id']}" - - return PandasDataset( - structure=urn, attributes=attached_attributes, data=df - ) - - -def __parse_generic_data( - dataset: Dict[str, Any], structure_info: Dict[str, Any] -) -> PandasDataset: - attached_attributes = __get_at_att_gen(dataset) - - # Parsing data - if SERIES in dataset: - # Generic Series - df = __reading_generic_series(dataset) - else: - # Generic All Dimensions - df = __reading_generic_all(dataset) - - urn = f"{structure_info['structure_type']}={structure_info['unique_id']}" - - return PandasDataset( - structure=urn, attributes=attached_attributes, data=df - ) - - -def create_dataset( - dataset: Any, str_info: Dict[str, Any], global_mode: Any -) -> PandasDataset: - """Creates the dataset from the xml file. - - Takes the information contained in the xml files - to fulfill the dataset and return a pandas dataframe. - - Args: - dataset: The dataset created. - str_info: Dict that contains info - such as agency_id, id and its version. - global_mode: Identifies if the xml file has - Generic data or a StructureSpecificData. - - Returns: - A pandas dataframe with the created dataset will be returned. - - Raises: - NotFound: If the structure reference cannot be found. - """ - if dataset[STRREF] not in str_info: - raise NotFound( - "Unknown structure", - f"Cannot find the structure reference " - f"of this dataset:{dataset[STRREF]}", - ) - structure_info = str_info[dataset[STRREF]] - if global_mode == STRSPE: - return __parse_structure_specific_data(dataset, structure_info) - else: - return __parse_generic_data(dataset, structure_info) diff --git a/src/pysdmx/io/xml/sdmx21/doc_validation.py b/src/pysdmx/io/xml/sdmx21/reader/doc_validation.py similarity index 100% rename from src/pysdmx/io/xml/sdmx21/doc_validation.py rename to src/pysdmx/io/xml/sdmx21/reader/doc_validation.py diff --git a/src/pysdmx/io/xml/sdmx21/reader/error.py b/src/pysdmx/io/xml/sdmx21/reader/error.py new file mode 100644 index 00000000..7034d369 --- /dev/null +++ b/src/pysdmx/io/xml/sdmx21/reader/error.py @@ -0,0 +1,25 @@ +"""SDMX 2.1 XML error reader.""" + +from typing import Any, Dict + +from pysdmx.errors import Invalid +from pysdmx.io.xml.sdmx21.__tokens import ( + ERROR, + ERROR_CODE, + ERROR_MESSAGE, + ERROR_TEXT, +) + + +def read(dict_info: Dict[str, Any]): + """Reads an Error message from the SDMX-ML file and raises the exception. + + Args: + dict_info: The dictionary with the error message. + + Raises: + Invalid: Error message as exception. + """ + code = dict_info[ERROR][ERROR_MESSAGE][ERROR_CODE] + text = dict_info[ERROR][ERROR_MESSAGE][ERROR_TEXT] + raise Invalid("Invalid", f"{code}: {text}") diff --git a/src/pysdmx/io/xml/sdmx21/reader/generic.py b/src/pysdmx/io/xml/sdmx21/reader/generic.py new file mode 100644 index 00000000..eb844ea4 --- /dev/null +++ b/src/pysdmx/io/xml/sdmx21/reader/generic.py @@ -0,0 +1,139 @@ +"""SDMX 2.1 XML Generic Data reader module.""" + +from typing import Any, Dict, Sequence + +import pandas as pd + +from pysdmx.io.pd import PandasDataset +from pysdmx.io.xml.sdmx21.__tokens import ( + ATTRIBUTES, + ID, + OBS, + OBS_DIM, + OBSKEY, + OBSVALUE, + SERIES, + SERIESKEY, + VALUE, +) +from pysdmx.io.xml.sdmx21.reader.__data_aux import ( + __process_df, + get_data_objects, +) +from pysdmx.io.xml.sdmx21.reader.__parse_xml import parse_xml +from pysdmx.io.xml.utils import add_list + + +def __get_element_to_list(data: Dict[str, Any], mode: Any) -> Dict[str, Any]: + obs = {} + data[mode][VALUE] = add_list(data[mode][VALUE]) + for k in data[mode][VALUE]: + obs[k[ID]] = k[VALUE.lower()] + return obs + + +def __reading_generic_series(dataset: Dict[str, Any]) -> pd.DataFrame: + # Generic Series + test_list = [] + df = None + dataset[SERIES] = add_list(dataset[SERIES]) + for series in dataset[SERIES]: + keys = {} + # Series Keys + series[SERIESKEY][VALUE] = add_list(series[SERIESKEY][VALUE]) + for v in series[SERIESKEY][VALUE]: + keys[v[ID]] = v[VALUE.lower()] + if ATTRIBUTES in series: + series[ATTRIBUTES][VALUE] = add_list(series[ATTRIBUTES][VALUE]) + for v in series[ATTRIBUTES][VALUE]: + keys[v[ID]] = v[VALUE.lower()] + if OBS in series: + series[OBS] = add_list(series[OBS]) + + for data in series[OBS]: + obs = { + OBS_DIM: data[OBS_DIM][VALUE.lower()], + OBSVALUE.upper(): data[OBSVALUE][VALUE.lower()], + } + if ATTRIBUTES in data: + obs = { + **obs, + **__get_element_to_list(data, mode=ATTRIBUTES), + } + test_list.append({**keys, **obs}) + else: + test_list.append(keys) + test_list, df = __process_df(test_list, df) + + test_list, df = __process_df(test_list, df, is_end=True) + + return df + + +def __reading_generic_all(dataset: Dict[str, Any]) -> pd.DataFrame: + # Generic All Dimensions + test_list = [] + df = None + dataset[OBS] = add_list(dataset[OBS]) + for data in dataset[OBS]: + obs: Dict[str, Any] = {} + obs = { + **obs, + **__get_element_to_list(data, mode=OBSKEY), + OBSVALUE.upper(): data[OBSVALUE][VALUE.lower()], + } + if ATTRIBUTES in data: + obs = {**obs, **__get_element_to_list(data, mode=ATTRIBUTES)} + test_list.append({**obs}) + test_list, df = __process_df(test_list, df) + + test_list, df = __process_df(test_list, df, is_end=True) + + return df + + +def __get_at_att_gen(dataset: Dict[str, Any]) -> Dict[str, Any]: + """Gets all the elements if it is Generic data.""" + attached_attributes: Dict[str, Any] = {} + if ATTRIBUTES not in dataset: + return attached_attributes + dataset[ATTRIBUTES][VALUE] = add_list(dataset[ATTRIBUTES][VALUE]) + for k in dataset[ATTRIBUTES][VALUE]: + attached_attributes[k[ID]] = k[VALUE.lower()] + return attached_attributes + + +def __parse_generic_data( + dataset: Dict[str, Any], structure_info: Dict[str, Any] +) -> PandasDataset: + attached_attributes = __get_at_att_gen(dataset) + + # Parsing data + if SERIES in dataset: + # Generic Series + df = __reading_generic_series(dataset) + else: + # Generic All Dimensions + df = __reading_generic_all(dataset) + + urn = f"{structure_info['structure_type']}={structure_info['unique_id']}" + + return PandasDataset( + structure=urn, attributes=attached_attributes, data=df + ) + + +def read(infile: str, validate: bool = True) -> Sequence[PandasDataset]: + """Reads an SDMX-ML 2.1 Generic file and returns a Sequence of Datasets. + + Args: + infile: string to read XML data from. + validate: If True, the XML data will be validated against the XSD. + """ + dict_info = parse_xml(infile, validate=validate) + dataset_info, str_info = get_data_objects(dict_info) + datasets = [] + for dataset in dataset_info: + ds = __parse_generic_data(dataset, str_info[dataset]) + datasets.append(ds) + return datasets diff --git a/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py b/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py new file mode 100644 index 00000000..77b247ce --- /dev/null +++ b/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py @@ -0,0 +1,109 @@ +"""SDMX 2.1 XML StructureSpecificData reader module.""" + +import itertools +from typing import Any, Dict, Sequence + +import numpy as np +import pandas as pd + +from pysdmx.io.pd import PandasDataset +from pysdmx.io.xml.sdmx21.__tokens import ( + GROUP, + OBS, + SERIES, + exc_attributes, +) +from pysdmx.io.xml.sdmx21.reader.__data_aux import ( + __process_df, + get_data_objects, +) +from pysdmx.io.xml.sdmx21.reader.__parse_xml import parse_xml +from pysdmx.io.xml.utils import add_list + + +def __reading_str_series(dataset: Dict[str, Any]) -> pd.DataFrame: + # Structure Specific Series + test_list = [] + df = None + dataset[SERIES] = add_list(dataset[SERIES]) + for data in dataset[SERIES]: + keys = dict(itertools.islice(data.items(), len(data))) + if OBS in data: + del keys[OBS] + data[OBS] = add_list(data[OBS]) + for j in data[OBS]: + test_list.append({**keys, **j}) + else: + test_list.append(keys) + test_list, df = __process_df(test_list, df) + + test_list, df = __process_df(test_list, df, is_end=True) + + return df + + +def __reading_group_data(dataset: Dict[str, Any]) -> pd.DataFrame: + # Structure Specific Group Data + test_list = [] + df = None + dataset[GROUP] = add_list(dataset[GROUP]) + for data in dataset[GROUP]: + test_list.append(dict(data.items())) + test_list, df = __process_df(test_list, df) + test_list, df = __process_df(test_list, df, is_end=True) + + cols_to_delete = [x for x in df.columns if ":type" in x] + for x in cols_to_delete: + del df[x] + + df = df.drop_duplicates(keep="first").reset_index(drop=True) + + return df + + +def __get_at_att_str(dataset: Dict[str, Any]) -> Dict[str, Any]: + """Gets the elements of the dataset if it is Structure Specific Data.""" + return {k: dataset[k] for k in dataset if k not in exc_attributes} + + +def __parse_structure_specific_data( + dataset: Dict[str, Any], structure_info: Dict[str, Any] +) -> PandasDataset: + attached_attributes = __get_at_att_str(dataset) + + # Parsing data + if SERIES in dataset: + # Structure Specific Series + df = __reading_str_series(dataset) + if GROUP in dataset: + df_group = __reading_group_data(dataset) + common_columns = list( + set(df.columns).intersection(set(df_group.columns)) + ) + df = pd.merge(df, df_group, on=common_columns, how="left") + else: + dataset[OBS] = add_list(dataset[OBS]) + # Structure Specific All dimensions + df = pd.DataFrame(dataset[OBS]).replace(np.nan, "") + + urn = f"{structure_info['structure_type']}={structure_info['unique_id']}" + + return PandasDataset( + structure=urn, attributes=attached_attributes, data=df + ) + + +def read(infile: str, validate: bool = True) -> Sequence[PandasDataset]: + """Reads an SDMX-ML 2.1 Generic file and returns a Sequence of Datasets. + + Args: + infile: string to read XML data from. + validate: If True, the XML data will be validated against the XSD. + """ + dict_info = parse_xml(infile, validate=validate) + dataset_info, str_info = get_data_objects(dict_info) + datasets = [] + for dataset in dataset_info: + ds = __parse_structure_specific_data(dataset, str_info[dataset]) + datasets.append(ds) + return datasets diff --git a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py b/src/pysdmx/io/xml/sdmx21/reader/structures.py similarity index 89% rename from src/pysdmx/io/xml/sdmx21/reader/metadata_read.py rename to src/pysdmx/io/xml/sdmx21/reader/structures.py index e2f849b3..662cefb2 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/metadata_read.py +++ b/src/pysdmx/io/xml/sdmx21/reader/structures.py @@ -5,41 +5,7 @@ from msgspec import Struct -from pysdmx.io.xml.sdmx21.__parsing_config import ( - AS_STATUS, - ATT, - ATT_LIST, - ATT_LVL, - ATT_REL, - CLASS, - CODES_LOW, - COMPS, - CON_ID, - CON_LOW, - CORE_REP, - DIM, - DIM_LIST, - DSD_COMPS, - DTYPE, - ENUM, - ENUM_FORMAT, - GROUP, - GROUP_DIM, - LOCAL_CODES_LOW, - LOCAL_DTYPE, - LOCAL_FACETS_LOW, - LOCAL_REP, - MANDATORY, - ME_LIST, - PAR_ID, - PAR_VER, - PRIM_MEASURE, - REF, - REQUIRED, - TEXT_FORMAT, - TIME_DIM, -) -from pysdmx.io.xml.sdmx21.reader.__utils import ( +from pysdmx.io.xml.sdmx21.__tokens import ( AGENCIES, AGENCY, AGENCY_ID, @@ -49,24 +15,43 @@ ANNOTATION_TYPE, ANNOTATION_URL, ANNOTATIONS, + AS_STATUS, + ATT, + ATT_LIST, + ATT_LVL, + ATT_REL, CL, + CLASS, CLS, CODE, + CODES_LOW, + COMPS, CON, + CON_ID, + CON_LOW, CONCEPTS, CONTACT, + CORE_REP, CS, DEPARTMENT, DESC, DFW, DFWS, + DIM, + DIM_LIST, DSD, + DSD_COMPS, DSDS, + DTYPE, EMAIL, EMAILS, + ENUM, + ENUM_FORMAT, FACETS, FAX, FAXES, + GROUP, + GROUP_DIM, ID, IS_EXTERNAL_REF, IS_EXTERNAL_REF_LOW, @@ -74,18 +59,31 @@ IS_FINAL_LOW, IS_PARTIAL, IS_PARTIAL_LOW, + LOCAL_CODES_LOW, + LOCAL_DTYPE, + LOCAL_FACETS_LOW, + LOCAL_REP, + MANDATORY, + ME_LIST, NAME, ORGS, + PAR_ID, + PAR_VER, + PRIM_MEASURE, + REF, + REQUIRED, ROLE, SER_URL, SER_URL_LOW, - STR, STR_URL, STR_URL_LOW, + STRUCTURE, TELEPHONE, TELEPHONES, TEXT, + TEXT_FORMAT, TEXT_TYPE, + TIME_DIM, TITLE, TRANS_SCHEME, TRANSFORMATION, @@ -100,7 +98,6 @@ VALID_TO, VALID_TO_LOW, VERSION, - FacetType, ) from pysdmx.io.xml.utils import add_list from pysdmx.model import ( @@ -146,7 +143,43 @@ PRIM_MEASURE: Role.MEASURE, } -components: Dict[str, Any] = {} +FACETS_MAPPING = { + "minLength": "min_length", + "maxLength": "max_length", + "minValue": "min_value", + "maxValue": "max_value", + "startValue": "start_value", + "endValue": "end_value", + "interval": "interval", + "timeInterval": "time_interval", + "decimals": "decimals", + "pattern": "pattern", + "startTime": "start_time", + "endTime": "end_time", + "isSequence": "is_sequence", +} + + +def _extract_text(element: Any) -> str: + """Extracts the text from the element. + + Args: + element: The element to extract the text from + + Returns: + The text extracted from the element + """ + if isinstance(element, list): + aux = {} + for language_element in element: + if "lang" in language_element and language_element["lang"] == "en": + aux = language_element + if not aux: + aux = element[0] + element = aux + if isinstance(element, dict) and "#text" in element: + element = element["#text"] + return element class StructureParser(Struct): @@ -158,30 +191,6 @@ class StructureParser(Struct): datastructures: Dict[str, Any] = {} dataflows: Dict[str, Any] = {} - def __extract_text(self, element: Any) -> str: - """Extracts the text from the element. - - Args: - element: The element to extract the text from - - Returns: - The text extracted from the element - """ - if isinstance(element, list): - aux = {} - for language_element in element: - if ( - "lang" in language_element - and language_element["lang"] == "en" - ): - aux = language_element - if not aux: - aux = element[0] - element = aux - if isinstance(element, dict) and "#text" in element: - element = element["#text"] - return element - def __format_contact(self, json_contact: Dict[str, Any]) -> Contact: """Creates a Contact object from a json_contact. @@ -206,17 +215,18 @@ def __format_contact(self, json_contact: Dict[str, Any]) -> Contact: for k, v in xml_node_to_attribute.items(): if k in json_contact: if k in [DEPARTMENT, ROLE]: - json_contact[v] = self.__extract_text(json_contact.pop(k)) + json_contact[v] = _extract_text(json_contact.pop(k)) continue field_info = add_list(json_contact.pop(k)) for i, element in enumerate(field_info): - field_info[i] = self.__extract_text(element) + field_info[i] = _extract_text(element) json_contact[v] = field_info return Contact(**json_contact) - def __format_annotations(self, item_elem: Any) -> Dict[str, Any]: - """Formats the annotations in the item_elem. + @staticmethod + def __format_annotations(item_elem: Any) -> Dict[str, Any]: + """Formats the annotations in this element. Args: item_elem: The element to be formatted @@ -236,7 +246,7 @@ def __format_annotations(self, item_elem: Any) -> Dict[str, Any]: if ANNOTATION_TYPE in e: e[TYPE] = e.pop(ANNOTATION_TYPE) if ANNOTATION_TEXT in e: - e[TEXT] = self.__extract_text(e[ANNOTATION_TEXT]) + e[TEXT] = _extract_text(e[ANNOTATION_TEXT]) del e[ANNOTATION_TEXT] if ANNOTATION_URL in e: e[URL] = e.pop(ANNOTATION_URL) @@ -248,11 +258,12 @@ def __format_annotations(self, item_elem: Any) -> Dict[str, Any]: return item_elem - def __format_name_description(self, element: Any) -> Dict[str, Any]: + @staticmethod + def __format_name_description(element: Any) -> Dict[str, Any]: node = [NAME, DESC] for field in node: if field in element: - element[field.lower()] = self.__extract_text(element[field]) + element[field.lower()] = _extract_text(element[field]) del element[field] return element @@ -260,7 +271,7 @@ def __format_name_description(self, element: Any) -> Dict[str, Any]: def __format_facets( json_fac: Dict[str, Any], json_obj: Dict[str, Any] ) -> None: - """Formats the facets in the json_fac to be stored in json_obj. + """Formats the facets from the JSON information. Args: json_fac: The element with the facets to be formatted @@ -272,14 +283,26 @@ def __format_facets( if key == TEXT_TYPE and json_fac[TEXT_TYPE] in list(DataType): json_obj["dtype"] = DataType(json_fac[TEXT_TYPE]) - if key in FacetType: + if key in FACETS_MAPPING: facet_kwargs = { - FacetType[k]: v + FACETS_MAPPING[k]: v for k, v in json_fac.items() - if k in FacetType + if k in FACETS_MAPPING } json_obj[FACETS.lower()] = Facets(**facet_kwargs) + @staticmethod + def __format_validity(element: Dict[str, Any]) -> Dict[str, Any]: + if VALID_FROM in element: + element[VALID_FROM_LOW] = datetime.fromisoformat( + element.pop(VALID_FROM) + ) + if VALID_TO in element: + element[VALID_TO_LOW] = datetime.fromisoformat( + element.pop(VALID_TO) + ) + return element + @staticmethod def __format_urls(json_elem: Dict[str, Any]) -> Dict[str, Any]: """Formats the STR_URL and SER_URL keys in the element. @@ -323,21 +346,10 @@ def __format_orgs(self, json_orgs: Dict[str, Any]) -> Dict[str, Any]: orgs = {**orgs, **ag_sch} return orgs - def __format_validity(self, element: Dict[str, Any]) -> Dict[str, Any]: - if VALID_FROM in element: - element[VALID_FROM_LOW] = datetime.fromisoformat( - element.pop(VALID_FROM) - ) - if VALID_TO in element: - element[VALID_TO_LOW] = datetime.fromisoformat( - element.pop(VALID_TO) - ) - return element - def __format_representation( self, json_rep: Dict[str, Any], json_obj: Dict[str, Any] ) -> None: - """Formats the representation in the json_rep.""" + """Formats the representation in the JSON Representation.""" if TEXT_FORMAT in json_rep: self.__format_facets(json_rep[TEXT_FORMAT], json_obj) @@ -406,7 +418,8 @@ def __format_con_id(self, concept_ref: Dict[str, Any]) -> Dict[str, Any]: return {CON: item_reference} return rep - def __format_relationship(self, json_rel: Dict[str, Any]) -> Optional[str]: + @staticmethod + def __format_relationship(json_rel: Dict[str, Any]) -> Optional[str]: att_level = None for scheme in [DIM, PRIM_MEASURE]: @@ -477,16 +490,13 @@ def __format_components(self, element: Dict[str, Any]) -> Dict[str, Any]: if DSD_COMPS in element: element[COMPS] = [] comps = element[DSD_COMPS] - components.clear() for comp_list in [DIM_LIST, ME_LIST, GROUP, ATT_LIST]: if comp_list == GROUP and comp_list in comps: del comps[GROUP] elif comp_list in comps: - name = comp_list fmt_comps = self.__format_component_lists(comps[comp_list]) - components[name] = fmt_comps element[COMPS].extend(fmt_comps) element[COMPS] = Components(element[COMPS]) @@ -494,7 +504,8 @@ def __format_components(self, element: Dict[str, Any]) -> Dict[str, Any]: return element - def __format_vtl(self, json_vtl: Dict[str, Any]) -> Dict[str, Any]: + @staticmethod + def __format_vtl(json_vtl: Dict[str, Any]) -> Dict[str, Any]: if "isPersistent" in json_vtl: json_vtl["is_persistent"] = json_vtl.pop("isPersistent") if "Expression" in json_vtl: @@ -618,12 +629,12 @@ def __format_schema( ) if item == DFW: - ref_data = element[STR][REF] + ref_data = element[STRUCTURE][REF] reference_str = ( f"{ref_data[CLASS]}={ref_data[AGENCY_ID]}" f":{ref_data[ID]}({ref_data[VERSION]})" ) - element[STR] = self.datastructures.get( + element[STRUCTURE] = self.datastructures.get( reference_str, reference_str ) diff --git a/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py b/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py index 77b0b34a..606d8998 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py +++ b/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py @@ -1,8 +1,8 @@ """Read SDMX-ML submission messages.""" -from typing import Any, Dict +from typing import Any, Dict, Sequence -from pysdmx.io.xml.sdmx21.__parsing_config import ( +from pysdmx.io.xml.sdmx21.__tokens import ( ACTION, MAINTAINABLE_OBJECT, REG_INTERFACE, @@ -13,11 +13,14 @@ SUBMITTED_STRUCTURE, URN, ) +from pysdmx.io.xml.sdmx21.reader.__parse_xml import parse_xml from pysdmx.model.submission import SubmissionResult from pysdmx.util import parse_urn -def handle_registry_interface(dict_info: Dict[str, Any]) -> Dict[str, Any]: +def __handle_registry_interface( + dict_info: Dict[str, Any], +) -> Sequence[SubmissionResult]: """Handle the Registry Interface message. Args: @@ -28,12 +31,24 @@ def handle_registry_interface(dict_info: Dict[str, Any]) -> Dict[str, Any]: """ response = dict_info[REG_INTERFACE][SUBMIT_STRUCTURE_RESPONSE] - result = {} + result = [] for submission_result in response[SUBMISSION_RESULT]: structure = submission_result[SUBMITTED_STRUCTURE] action = structure[ACTION] urn = structure[MAINTAINABLE_OBJECT][URN] short_urn = str(parse_urn(urn)) status = submission_result[STATUS_MSG][STATUS] - result[short_urn] = SubmissionResult(action, short_urn, status) + sr = SubmissionResult(action, short_urn, status) + result.append(sr) return result + + +def read(infile: str, validate: bool = True) -> Sequence[SubmissionResult]: + """Reads an SDMX-ML 2.1 Submission Result file. + + Args: + infile: string to read XML data from. + validate: If True, the XML data will be validated against the XSD. + """ + dict_info = parse_xml(infile, validate=validate) + return __handle_registry_interface(dict_info) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 66d2afb9..8fb02a48 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -4,7 +4,7 @@ from typing import Any, Dict, Optional, Sequence, Union from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.__parsing_config import ( +from pysdmx.io.xml.sdmx21.__tokens import ( AGENCIES, AGENCY_ID, AS_STATUS, From a527de0a1fdfb2a2483a9194470533c7e49493bb Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 11:14:48 +0100 Subject: [PATCH 43/62] Draft code on input processing. Added dataflow support to get_datasets. Signed-off-by: javier.hernandez --- src/pysdmx/io/input_processor.py | 34 +++++---- src/pysdmx/io/reader.py | 69 +++++++++++++------ src/pysdmx/io/xml/sdmx21/reader/error.py | 9 +-- .../reader/{structures.py => structure.py} | 29 +++++++- .../{submission_reader.py => submission.py} | 0 src/pysdmx/model/message.py | 4 ++ 6 files changed, 103 insertions(+), 42 deletions(-) rename src/pysdmx/io/xml/sdmx21/reader/{structures.py => structure.py} (96%) rename src/pysdmx/io/xml/sdmx21/reader/{submission_reader.py => submission.py} (100%) diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 9b4ef36b..4ab42bac 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -80,7 +80,7 @@ def __check_sdmx_str(infile: str) -> Tuple[str, SDMXFormat]: def process_string_to_read( - input: Union[str, Path, BytesIO], + sdmx_document: Union[str, Path, BytesIO], ) -> Tuple[str, SDMXFormat]: """Processes the input that comes into read_sdmx function. @@ -88,7 +88,7 @@ def process_string_to_read( URL, or string. Args: - input: Path to file, URL, or string. + sdmx_document: Path to file, URL, or string. Returns: tuple: Tuple containing the parsed input and the format of the input. @@ -96,22 +96,26 @@ def process_string_to_read( Raises: Invalid: If the input cannot be parsed as SDMX. """ - if isinstance(input, str) and os.path.exists(input): - input = Path(input) + if isinstance(sdmx_document, str) and os.path.exists(sdmx_document): + sdmx_document = Path(sdmx_document) # Read file as string - if isinstance(input, (Path, PathLike)): - with open(input, "r", encoding="utf-8-sig", errors="replace") as f: + if isinstance(sdmx_document, (Path, PathLike)): + with open( + sdmx_document, "r", encoding="utf-8-sig", errors="replace" + ) as f: out_str = f.read() # Read from BytesIO - elif isinstance(input, BytesIO): - text_wrap = TextIOWrapper(input, encoding="utf-8", errors="replace") + elif isinstance(sdmx_document, BytesIO): + text_wrap = TextIOWrapper( + sdmx_document, encoding="utf-8", errors="replace" + ) out_str = text_wrap.read() - elif isinstance(input, str): - if input.startswith("http"): + elif isinstance(sdmx_document, str): + if sdmx_document.startswith("http"): try: - response = httpx_get(input, timeout=60) + response = httpx_get(sdmx_document, timeout=60) if ( response.status_code != 200 and " Message: - """Reads any sdmx file or buffer and returns a dictionary. + """Reads any SDMX message and returns a dictionary. Supported metadata formats are: - SDMX-ML 2.1 @@ -29,9 +28,7 @@ def read_sdmx( - SDMX-CSV 2.0 Args: - infile: Path to file (pathlib.Path), URL, or string. - use_dataset_id: Whether to use the dataset ID as - the key in the resulting dictionary (only for SDMX-ML). + sdmx_document: Path to file (pathlib.Path), URL, or string. validate: Validate the input file (only for SDMX-ML). Returns: @@ -40,21 +37,33 @@ def read_sdmx( Raises: Invalid: If the file is empty or the format is not supported. """ - input_str, read_format = process_string_to_read(infile) + input_str, read_format = process_string_to_read(sdmx_document) - if read_format in ( - SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, - SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, - SDMXFormat.SDMX_ML_2_1_STRUCTURE, - SDMXFormat.SDMX_ML_2_1_SUBMISSION, - SDMXFormat.SDMX_ML_2_1_ERROR, - ): - # SDMX-ML 2.1 - from pysdmx.io.xml.sdmx21.reader import read_xml + if read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE: + # SDMX-ML 2.1 Structure + from pysdmx.io.xml.sdmx21.reader.structure import read - result = read_xml( - input_str, validate=validate, use_dataset_id=use_dataset_id - ) + result = read(input_str) + elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: + # SDMX-ML 2.1 Generic Data + from pysdmx.io.xml.sdmx21.reader.generic import read + + result = read(input_str, validate=validate) + elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: + # SDMX-ML 2.1 Structure Specific Data + from pysdmx.io.xml.sdmx21.reader.structure_specific import read + + result = read(input_str) + elif read_format == SDMXFormat.SDMX_ML_2_1_SUBMISSION: + # SDMX-ML 2.1 Submission + from pysdmx.io.xml.sdmx21.reader.submission import read + + result = read(input_str) + elif read_format == SDMXFormat.SDMX_ML_2_1_ERROR: + # SDMX-ML 2.1 Error + from pysdmx.io.xml.sdmx21.reader.error import read + + result = read(input_str) elif read_format == SDMXFormat.SDMX_CSV_1_0: # SDMX-CSV 1.0 from pysdmx.io.csv.sdmx10.reader import read @@ -79,6 +88,8 @@ def read_sdmx( # TODO: Add here the Schema download for Datasets, based on structure # TODO: Ensure we have changed the signature of the data readers return Message(data=result) + elif read_format == SDMXFormat.SDMX_ML_2_1_SUBMISSION: + return Message(submission=result) # TODO: Ensure we have changed the signature of the structure readers return Message(structures=result) @@ -100,6 +111,11 @@ def get_datasets( Returns: A sequence of Datasets + + Raises: + Invalid: + If the data message is empty or the related data structure + (or dataflow with its children) is not found. """ data_msg = read_sdmx(data, validate=validate) if not data_msg.data: @@ -109,7 +125,7 @@ def get_datasets( if structure_msg.structures is None: raise Invalid("No structure found in the structure message") - for dataset in data_msg.data.values(): + for dataset in data_msg.data: short_urn: str = ( dataset.structure.short_urn if isinstance(dataset.structure, Schema) @@ -122,5 +138,16 @@ def get_datasets( dataset.structure = dsd.to_schema() except NotFound: continue + elif sdmx_type == "DataFlow": + try: + dataflow = structure_msg.get_dataflow(short_urn) + if dataflow.structure is None: + continue + dsd = structure_msg.get_data_structure_definition( + dataflow.structure + ) + dataflow.structure = dsd.to_schema() + except NotFound: + continue - return list(data_msg.data.values()) + return list(data_msg.data) diff --git a/src/pysdmx/io/xml/sdmx21/reader/error.py b/src/pysdmx/io/xml/sdmx21/reader/error.py index 7034d369..0f881a41 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/error.py +++ b/src/pysdmx/io/xml/sdmx21/reader/error.py @@ -1,7 +1,5 @@ """SDMX 2.1 XML error reader.""" -from typing import Any, Dict - from pysdmx.errors import Invalid from pysdmx.io.xml.sdmx21.__tokens import ( ERROR, @@ -9,17 +7,20 @@ ERROR_MESSAGE, ERROR_TEXT, ) +from pysdmx.io.xml.sdmx21.reader.__parse_xml import parse_xml -def read(dict_info: Dict[str, Any]): +def read(input_str: str, validate: bool = True): """Reads an Error message from the SDMX-ML file and raises the exception. Args: - dict_info: The dictionary with the error message. + input_str: The SDMX-ML file as a string. + validate: If True, the input is validated before Raises: Invalid: Error message as exception. """ + dict_info = parse_xml(input_str, validate=validate) code = dict_info[ERROR][ERROR_MESSAGE][ERROR_CODE] text = dict_info[ERROR][ERROR_MESSAGE][ERROR_TEXT] raise Invalid("Invalid", f"{code}: {text}") diff --git a/src/pysdmx/io/xml/sdmx21/reader/structures.py b/src/pysdmx/io/xml/sdmx21/reader/structure.py similarity index 96% rename from src/pysdmx/io/xml/sdmx21/reader/structures.py rename to src/pysdmx/io/xml/sdmx21/reader/structure.py index 662cefb2..d33e1288 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/structures.py +++ b/src/pysdmx/io/xml/sdmx21/reader/structure.py @@ -1,7 +1,7 @@ """Parsers for reading metadata.""" from datetime import datetime -from typing import Any, Dict, List, Optional +from typing import Any, Dict, List, Optional, Sequence from msgspec import Struct @@ -99,6 +99,7 @@ VALID_TO_LOW, VERSION, ) +from pysdmx.io.xml.sdmx21.reader.__parse_xml import parse_xml from pysdmx.io.xml.utils import add_list from pysdmx.model import ( AgencyScheme, @@ -648,7 +649,9 @@ def __format_schema( return schemas - def format_structures(self, json_meta: Dict[str, Any]) -> Dict[str, Any]: + def format_structures( + self, json_meta: Dict[str, Any] + ) -> Sequence[ItemScheme, DataStructureDefinition, Dataflow]: """Formats the structures in json format. Args: @@ -682,4 +685,24 @@ def format_structures(self, json_meta: Dict[str, Any]) -> Dict[str, Any]: json_meta[TRANSFORMATIONS], TRANS_SCHEME, TRANSFORMATION ) # Reset global variables - return structures + result = [] + for value in structures.values(): + for compound in value.values(): + result.append(compound) + + return result + + +def read( + infile: str, +) -> Sequence[ItemScheme, DataStructureDefinition, Dataflow]: + """Reads an SDMX-ML 2.1 Structure file and returns a sequence with the structures. + + Args: + infile: string to read XML data from. + + Returns: + dict: Dictionary with the parsed structures. + """ + dict_info = parse_xml(infile) + return StructureParser().format_structures(dict_info[STRUCTURE]) diff --git a/src/pysdmx/io/xml/sdmx21/reader/submission_reader.py b/src/pysdmx/io/xml/sdmx21/reader/submission.py similarity index 100% rename from src/pysdmx/io/xml/sdmx21/reader/submission_reader.py rename to src/pysdmx/io/xml/sdmx21/reader/submission.py diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 786f48f9..4d3b47b9 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -24,6 +24,7 @@ from pysdmx.model.concept import ConceptScheme from pysdmx.model.dataflow import Dataflow, DataStructureDefinition from pysdmx.model.dataset import ActionType, Dataset +from pysdmx.model.submission import SubmissionResult class Header(Struct, kw_only=True): @@ -47,6 +48,8 @@ class Message(Struct, frozen=True): They represent the contents of a Structure Message. data: Sequence of Dataset objects. They represent the contents of a SDMX Data Message in any format. + submission: Sequence of SubmissionResult objects. They represent the + contents of a SDMX Submission Message. """ structures: Sequence[ @@ -57,6 +60,7 @@ class Message(Struct, frozen=True): ], ] = None data: Sequence[Dataset] = None + submission: Optional[Sequence[SubmissionResult]] = None def __post_init__(self) -> None: """Checks if the content is valid.""" From 09fbb8c30823ea52e9a1dc8fc0d7720a87e25979 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 11:53:59 +0100 Subject: [PATCH 44/62] Removed inconsistencies on read signature. Fixed input data on each XML reader. Added some error handling if a wrong SDMX message is used as input. Signed-off-by: javier.hernandez --- src/pysdmx/io/csv/sdmx10/reader/__init__.py | 6 +-- src/pysdmx/io/csv/sdmx20/reader/__init__.py | 6 +-- src/pysdmx/io/reader.py | 35 +++++++---------- src/pysdmx/io/xml/__init__.py | 39 ------------------- src/pysdmx/io/xml/sdmx21/reader/__data_aux.py | 14 +++++-- src/pysdmx/io/xml/sdmx21/reader/error.py | 6 ++- src/pysdmx/io/xml/sdmx21/reader/generic.py | 16 +++++--- src/pysdmx/io/xml/sdmx21/reader/structure.py | 24 ++++++++---- .../xml/sdmx21/reader/structure_specific.py | 19 ++++++--- src/pysdmx/io/xml/sdmx21/reader/submission.py | 9 +++-- src/pysdmx/io/xml/sdmx21/writer/structure.py | 5 ++- src/pysdmx/model/message.py | 32 +++++++++------ 12 files changed, 107 insertions(+), 104 deletions(-) diff --git a/src/pysdmx/io/csv/sdmx10/reader/__init__.py b/src/pysdmx/io/csv/sdmx10/reader/__init__.py index 517a3b66..50993a4f 100644 --- a/src/pysdmx/io/csv/sdmx10/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx10/reader/__init__.py @@ -33,11 +33,11 @@ def __generate_dataset_from_sdmx_csv(data: pd.DataFrame) -> PandasDataset: ) -def read(infile: str) -> Sequence[PandasDataset]: +def read(input_str: str) -> Sequence[PandasDataset]: """Reads csv file and returns a payload dictionary. Args: - infile: Path to file, str. + input_str: Path to file, str. Returns: payload: dict. @@ -46,7 +46,7 @@ def read(infile: str) -> Sequence[PandasDataset]: Invalid: If it is an invalid CSV file. """ # Get Dataframe from CSV file - df_csv = pd.read_csv(StringIO(infile)) + df_csv = pd.read_csv(StringIO(input_str)) # Drop empty columns df_csv = df_csv.dropna(axis=1, how="all") diff --git a/src/pysdmx/io/csv/sdmx20/reader/__init__.py b/src/pysdmx/io/csv/sdmx20/reader/__init__.py index ccc92783..3653b45c 100644 --- a/src/pysdmx/io/csv/sdmx20/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/reader/__init__.py @@ -78,11 +78,11 @@ def __generate_dataset_from_sdmx_csv(data: pd.DataFrame) -> PandasDataset: ) -def read(infile: str) -> Sequence[PandasDataset]: +def read(input_str: str) -> Sequence[PandasDataset]: """Reads csv file and returns a payload dictionary. Args: - infile: Path to file, str. + input_str: Path to file, str. Returns: payload: dict. @@ -91,7 +91,7 @@ def read(infile: str) -> Sequence[PandasDataset]: Invalid: If it is an invalid CSV file. """ # Get Dataframe from CSV file - df_csv = pd.read_csv(StringIO(infile)) + df_csv = pd.read_csv(StringIO(input_str)) # Drop empty columns df_csv = df_csv.dropna(axis=1, how="all") diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index c3547b35..cf67a31f 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -5,8 +5,15 @@ from typing import Sequence, Union from pysdmx.errors import Invalid, NotFound +from pysdmx.io.csv.sdmx10.reader import read as read_csv_v1 +from pysdmx.io.csv.sdmx20.reader import read as read_csv_v2 from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read +from pysdmx.io.xml.sdmx21.reader.error import read as read_error +from pysdmx.io.xml.sdmx21.reader.generic import read as read_generic +from pysdmx.io.xml.sdmx21.reader.structure import read as read_structure +from pysdmx.io.xml.sdmx21.reader.structure_specific import read as read_str_spe +from pysdmx.io.xml.sdmx21.reader.submission import read as read_sub from pysdmx.model import Schema from pysdmx.model.dataset import Dataset from pysdmx.model.message import Message @@ -41,39 +48,25 @@ def read_sdmx( if read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE: # SDMX-ML 2.1 Structure - from pysdmx.io.xml.sdmx21.reader.structure import read - - result = read(input_str) + result = read_structure(input_str) elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: # SDMX-ML 2.1 Generic Data - from pysdmx.io.xml.sdmx21.reader.generic import read - - result = read(input_str, validate=validate) + result = read_generic(input_str, validate=validate) elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: # SDMX-ML 2.1 Structure Specific Data - from pysdmx.io.xml.sdmx21.reader.structure_specific import read - - result = read(input_str) + result = read_str_spe(input_str) elif read_format == SDMXFormat.SDMX_ML_2_1_SUBMISSION: # SDMX-ML 2.1 Submission - from pysdmx.io.xml.sdmx21.reader.submission import read - - result = read(input_str) + result = read_sub(input_str) elif read_format == SDMXFormat.SDMX_ML_2_1_ERROR: # SDMX-ML 2.1 Error - from pysdmx.io.xml.sdmx21.reader.error import read - - result = read(input_str) + result = read_error(input_str) elif read_format == SDMXFormat.SDMX_CSV_1_0: # SDMX-CSV 1.0 - from pysdmx.io.csv.sdmx10.reader import read - - result = read(input_str) + result = read_csv_v1(input_str) else: # SDMX-CSV 2.0 - from pysdmx.io.csv.sdmx20.reader import read - - result = read(input_str) + result = read_csv_v2(input_str) if len(result) == 0: raise Invalid("Empty SDMX Message") diff --git a/src/pysdmx/io/xml/__init__.py b/src/pysdmx/io/xml/__init__.py index 25df7fc8..be550c5a 100644 --- a/src/pysdmx/io/xml/__init__.py +++ b/src/pysdmx/io/xml/__init__.py @@ -1,40 +1 @@ """XML readers and writers.""" - -from pathlib import Path -from typing import Sequence, Union - -from pysdmx.io.input_processor import process_string_to_read -from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.sdmx21.reader import read_xml -from pysdmx.model import Codelist, ConceptScheme -from pysdmx.model.__base import ItemScheme -from pysdmx.model.dataflow import Dataflow, DataStructureDefinition -from pysdmx.model.message import SubmissionResult - -STR_TYPES = Union[ - ItemScheme, Codelist, ConceptScheme, DataStructureDefinition, Dataflow -] -ALL_TYPES = Union[STR_TYPES, PandasDataset, SubmissionResult] - - -def read( - infile: Union[str, Path], - validate: bool = False, - use_dataset_id: bool = False, -) -> Sequence[ALL_TYPES]: - """Reads an SDMX-ML file and returns a dictionary with the parsed data.""" - input_str, filetype = process_string_to_read(infile) - - dict_ = read_xml( - input_str, - validate=validate, - use_dataset_id=use_dataset_id, - ) - result = [] - for _, value in dict_.items(): - if isinstance(value, (PandasDataset, SubmissionResult)): - result.append(value) - else: - for item in value.values(): - result.append(item) - return result diff --git a/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py b/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py index 3a7e19f2..933f9696 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py @@ -1,7 +1,8 @@ -from typing import Any, Dict, List, Optional, Sequence +from typing import Any, Dict, List, Optional, Tuple import pandas as pd +from pysdmx.errors import Invalid, NotImplemented from pysdmx.io.xml.sdmx21.__tokens import ( AGENCY_ID, DATASET, @@ -11,12 +12,12 @@ REF, STR_USAGE, STRID, + STRREF, STRUCTURE, URN, VERSION, ) from pysdmx.io.xml.utils import add_list -from pysdmx.model.dataset import Dataset from pysdmx.util import parse_urn READING_CHUNKSIZE = 50000 @@ -110,7 +111,7 @@ def __extract_structure(structure: Any) -> Any: return str_info -def get_data_objects(dict_info: Dict[str, Any]) -> Sequence[Dataset]: +def get_data_objects(dict_info: Dict[str, Any]) -> Tuple[Any, Any]: """Parse dataset. Args: @@ -128,4 +129,11 @@ def get_data_objects(dict_info: Dict[str, Any]) -> Sequence[Dataset]: dataset_info = add_list(dict_info[key]) else: dataset_info = add_list(dict_info[DATASET]) + + for d in dataset_info: + if d[STRREF] not in str_info: + raise Invalid( + f"Dataset Structure Reference {d[STRREF]} " + f"not found in the Header" + ) return dataset_info, str_info diff --git a/src/pysdmx/io/xml/sdmx21/reader/error.py b/src/pysdmx/io/xml/sdmx21/reader/error.py index 0f881a41..1fdd57ee 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/error.py +++ b/src/pysdmx/io/xml/sdmx21/reader/error.py @@ -10,7 +10,7 @@ from pysdmx.io.xml.sdmx21.reader.__parse_xml import parse_xml -def read(input_str: str, validate: bool = True): +def read(input_str: str, validate: bool = True) -> None: """Reads an Error message from the SDMX-ML file and raises the exception. Args: @@ -21,6 +21,10 @@ def read(input_str: str, validate: bool = True): Invalid: Error message as exception. """ dict_info = parse_xml(input_str, validate=validate) + if ERROR not in dict_info: + raise Invalid( + "This SDMX document is not an SDMX-ML 2.1 Error message." + ) code = dict_info[ERROR][ERROR_MESSAGE][ERROR_CODE] text = dict_info[ERROR][ERROR_MESSAGE][ERROR_TEXT] raise Invalid("Invalid", f"{code}: {text}") diff --git a/src/pysdmx/io/xml/sdmx21/reader/generic.py b/src/pysdmx/io/xml/sdmx21/reader/generic.py index eb844ea4..0de79ddc 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/generic.py +++ b/src/pysdmx/io/xml/sdmx21/reader/generic.py @@ -4,9 +4,11 @@ import pandas as pd +from pysdmx.errors import Invalid from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.sdmx21.__tokens import ( ATTRIBUTES, + GENERIC, ID, OBS, OBS_DIM, @@ -14,6 +16,7 @@ OBSVALUE, SERIES, SERIESKEY, + STRREF, VALUE, ) from pysdmx.io.xml.sdmx21.reader.__data_aux import ( @@ -123,17 +126,20 @@ def __parse_generic_data( ) -def read(infile: str, validate: bool = True) -> Sequence[PandasDataset]: +def read(input_str: str, validate: bool = True) -> Sequence[PandasDataset]: """Reads an SDMX-ML 2.1 Generic file and returns a Sequence of Datasets. Args: - infile: string to read XML data from. + input_str: string to read XML data from. validate: If True, the XML data will be validated against the XSD. """ - dict_info = parse_xml(infile, validate=validate) - dataset_info, str_info = get_data_objects(dict_info) + dict_info = parse_xml(input_str, validate=validate) + if GENERIC not in dict_info: + raise Invalid("This SDMX document is not SDMX-ML 2.1 Generic.") + dataset_info, str_info = get_data_objects(dict_info[GENERIC]) + datasets = [] for dataset in dataset_info: - ds = __parse_generic_data(dataset, str_info[dataset]) + ds = __parse_generic_data(dataset, str_info[dataset[STRREF]]) datasets.append(ds) return datasets diff --git a/src/pysdmx/io/xml/sdmx21/reader/structure.py b/src/pysdmx/io/xml/sdmx21/reader/structure.py index d33e1288..04c8fb0d 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/structure.py +++ b/src/pysdmx/io/xml/sdmx21/reader/structure.py @@ -1,10 +1,11 @@ """Parsers for reading metadata.""" from datetime import datetime -from typing import Any, Dict, List, Optional, Sequence +from typing import Any, Dict, List, Optional, Sequence, Union from msgspec import Struct +from pysdmx.errors import Invalid from pysdmx.io.xml.sdmx21.__tokens import ( AGENCIES, AGENCY, @@ -78,6 +79,7 @@ STR_URL, STR_URL_LOW, STRUCTURE, + STRUCTURES, TELEPHONE, TELEPHONES, TEXT, @@ -651,7 +653,7 @@ def __format_schema( def format_structures( self, json_meta: Dict[str, Any] - ) -> Sequence[ItemScheme, DataStructureDefinition, Dataflow]: + ) -> Sequence[Union[ItemScheme, DataStructureDefinition, Dataflow]]: """Formats the structures in json format. Args: @@ -694,15 +696,21 @@ def format_structures( def read( - infile: str, -) -> Sequence[ItemScheme, DataStructureDefinition, Dataflow]: - """Reads an SDMX-ML 2.1 Structure file and returns a sequence with the structures. + input_str: str, + validate: bool = True, +) -> Sequence[Union[ItemScheme, DataStructureDefinition, Dataflow]]: + """Reads an SDMX-ML 2.1 Structure file and returns the structures. Args: - infile: string to read XML data from. + input_str: string to read XML data from. + validate: If True, the XML data will be validated against the XSD. Returns: dict: Dictionary with the parsed structures. """ - dict_info = parse_xml(infile) - return StructureParser().format_structures(dict_info[STRUCTURE]) + dict_info = parse_xml(input_str, validate) + if STRUCTURE not in dict_info: + raise Invalid("This SDMX document is not SDMX-ML 2.1 Structure.") + return StructureParser().format_structures( + dict_info[STRUCTURE][STRUCTURES] + ) diff --git a/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py b/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py index 77b247ce..440c4478 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py @@ -6,11 +6,14 @@ import numpy as np import pandas as pd +from pysdmx.errors import Invalid from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.sdmx21.__tokens import ( GROUP, OBS, SERIES, + STRREF, + STRSPE, exc_attributes, ) from pysdmx.io.xml.sdmx21.reader.__data_aux import ( @@ -93,17 +96,23 @@ def __parse_structure_specific_data( ) -def read(infile: str, validate: bool = True) -> Sequence[PandasDataset]: +def read(input_str: str, validate: bool = True) -> Sequence[PandasDataset]: """Reads an SDMX-ML 2.1 Generic file and returns a Sequence of Datasets. Args: - infile: string to read XML data from. + input_str: string to read XML data from. validate: If True, the XML data will be validated against the XSD. """ - dict_info = parse_xml(infile, validate=validate) - dataset_info, str_info = get_data_objects(dict_info) + dict_info = parse_xml(input_str, validate=validate) + if STRSPE not in dict_info: + raise Invalid( + "This SDMX document is not an SDMX-ML 2.1 StructureSpecificData." + ) + dataset_info, str_info = get_data_objects(dict_info[STRSPE]) datasets = [] for dataset in dataset_info: - ds = __parse_structure_specific_data(dataset, str_info[dataset]) + ds = __parse_structure_specific_data( + dataset, str_info[dataset[STRREF]] + ) datasets.append(ds) return datasets diff --git a/src/pysdmx/io/xml/sdmx21/reader/submission.py b/src/pysdmx/io/xml/sdmx21/reader/submission.py index 606d8998..7e03d75c 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/submission.py +++ b/src/pysdmx/io/xml/sdmx21/reader/submission.py @@ -2,6 +2,7 @@ from typing import Any, Dict, Sequence +from pysdmx.errors import Invalid from pysdmx.io.xml.sdmx21.__tokens import ( ACTION, MAINTAINABLE_OBJECT, @@ -43,12 +44,14 @@ def __handle_registry_interface( return result -def read(infile: str, validate: bool = True) -> Sequence[SubmissionResult]: +def read(input_str: str, validate: bool = True) -> Sequence[SubmissionResult]: """Reads an SDMX-ML 2.1 Submission Result file. Args: - infile: string to read XML data from. + input_str: string to read XML data from. validate: If True, the XML data will be validated against the XSD. """ - dict_info = parse_xml(infile, validate=validate) + dict_info = parse_xml(input_str, validate=validate) + if REG_INTERFACE not in dict_info: + raise Invalid("This SDMX document is not an SDMX-ML 2.1 Submission.") return __handle_registry_interface(dict_info) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 8fb02a48..01e0a292 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -19,6 +19,7 @@ CORE_REP, CS, DEPARTMENT, + DFW, DIM, DSD, DSD_COMPS, @@ -46,7 +47,6 @@ URN, VERSION, ) -from pysdmx.io.xml.sdmx21.reader.__utils import DFW from pysdmx.io.xml.sdmx21.writer.__write_aux import ( ABBR_COM, ABBR_MSG, @@ -59,6 +59,7 @@ get_end_message, ) from pysdmx.model import ( + AgencyScheme, Codelist, Concept, ConceptScheme, @@ -115,7 +116,7 @@ ] STR_DICT_TYPE_LIST = { - ItemScheme: "OrganisationSchemes", + AgencyScheme: "OrganisationSchemes", Codelist: "Codelists", ConceptScheme: "Concepts", DataStructureDefinition: "DataStructures", diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 4d3b47b9..1de90e55 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -52,14 +52,16 @@ class Message(Struct, frozen=True): contents of a SDMX Submission Message. """ - structures: Sequence[ - Union[ - ItemScheme, - DataStructureDefinition, - Dataflow, - ], + structures: Optional[ + Sequence[ + Union[ + ItemScheme, + DataStructureDefinition, + Dataflow, + ] + ] ] = None - data: Sequence[Dataset] = None + data: Optional[Sequence[Dataset]] = None submission: Optional[Sequence[SubmissionResult]] = None def __post_init__(self) -> None: @@ -93,12 +95,20 @@ def __get_elements(self, type_: Type[Any]) -> List[Any]: structures.append(element) return structures - def __get_single_structure(self, type_: Type[Any], short_urn: str) -> Any: + def __get_single_structure( + self, + type_: Type[Union[ItemScheme, DataStructureDefinition, Dataflow]], + short_urn: str, + ) -> Any: """Returns a specific element from content.""" + if self.structures is None: + raise NotFound( + "No Structures found in message.", + "Could not find any Structures in this message.", + ) for structure in self.structures: - if ( - structure.short_urn == short_urn # type: ignore[attr-defined] - and isinstance(structure, type_) + if structure.short_urn == short_urn and isinstance( + structure, type_ ): return structure From af4ecc777b60ded4c7c5e454022f55ce1a419b1e Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 12:01:15 +0100 Subject: [PATCH 45/62] Fixed mypy errors before testing. Signed-off-by: javier.hernandez --- src/pysdmx/io/reader.py | 31 +++++++++++++++++++------------ src/pysdmx/model/message.py | 2 +- 2 files changed, 20 insertions(+), 13 deletions(-) diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index cf67a31f..39374569 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -46,29 +46,36 @@ def read_sdmx( """ input_str, read_format = process_string_to_read(sdmx_document) + result_data = None + result_structures = None + result_submission = None if read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE: # SDMX-ML 2.1 Structure - result = read_structure(input_str) + result_structures = read_structure(input_str) elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: # SDMX-ML 2.1 Generic Data - result = read_generic(input_str, validate=validate) + result_data = read_generic(input_str, validate=validate) elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: # SDMX-ML 2.1 Structure Specific Data - result = read_str_spe(input_str) + result_data = read_str_spe(input_str) elif read_format == SDMXFormat.SDMX_ML_2_1_SUBMISSION: # SDMX-ML 2.1 Submission - result = read_sub(input_str) + result_submission = read_sub(input_str) elif read_format == SDMXFormat.SDMX_ML_2_1_ERROR: # SDMX-ML 2.1 Error - result = read_error(input_str) + read_error(input_str) elif read_format == SDMXFormat.SDMX_CSV_1_0: # SDMX-CSV 1.0 - result = read_csv_v1(input_str) + result_data = read_csv_v1(input_str) else: # SDMX-CSV 2.0 - result = read_csv_v2(input_str) + result_data = read_csv_v2(input_str) - if len(result) == 0: + if ( + result_data is None + and result_structures is None + and result_submission is None + ): raise Invalid("Empty SDMX Message") # Returning a Message class @@ -80,12 +87,12 @@ def read_sdmx( ): # TODO: Add here the Schema download for Datasets, based on structure # TODO: Ensure we have changed the signature of the data readers - return Message(data=result) + return Message(data=result_data) elif read_format == SDMXFormat.SDMX_ML_2_1_SUBMISSION: - return Message(submission=result) + return Message(submission=result_submission) # TODO: Ensure we have changed the signature of the structure readers - return Message(structures=result) + return Message(structures=result_structures) def get_datasets( @@ -139,7 +146,7 @@ def get_datasets( dsd = structure_msg.get_data_structure_definition( dataflow.structure ) - dataflow.structure = dsd.to_schema() + dataset.structure = dsd.to_schema() except NotFound: continue diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 1de90e55..0b9b0168 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -107,7 +107,7 @@ def __get_single_structure( "Could not find any Structures in this message.", ) for structure in self.structures: - if structure.short_urn == short_urn and isinstance( + if structure.short_urn() == short_urn and isinstance( structure, type_ ): return structure From f84d23462197506eee490d8be5b642cf794d7ae4 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 12:04:24 +0100 Subject: [PATCH 46/62] Changed short_urn to property in MaintainableArtefact. Signed-off-by: javier.hernandez --- src/pysdmx/io/xml/sdmx21/reader/structure.py | 2 +- src/pysdmx/io/xml/sdmx21/writer/structure.py | 4 ++-- src/pysdmx/model/__base.py | 1 + src/pysdmx/model/message.py | 2 +- tests/model/test_codelist.py | 2 +- 5 files changed, 6 insertions(+), 5 deletions(-) diff --git a/src/pysdmx/io/xml/sdmx21/reader/structure.py b/src/pysdmx/io/xml/sdmx21/reader/structure.py index 04c8fb0d..8bee677c 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/structure.py +++ b/src/pysdmx/io/xml/sdmx21/reader/structure.py @@ -579,7 +579,7 @@ def __format_scheme( del element["xmlns"] # Dynamic creation with specific class result: ItemScheme = STRUCTURES_MAPPING[scheme](**element) - elements[result.short_urn()] = result + elements[result.short_urn] = result return elements diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 01e0a292..d74491c4 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -483,7 +483,7 @@ def __write_text_format( def __write_enumeration(codes: Union[Codelist, Hierarchy], indent: str) -> str: """Writes the enumeration to the XML file.""" - ref = parse_short_urn(codes.short_urn()) + ref = parse_short_urn(codes.short_urn) outfile = f"{add_indent(indent)}<{ABBR_STR}:{ENUM}>" outfile += f"{add_indent(add_indent(indent))}<{REF} " @@ -671,7 +671,7 @@ def write( The XML string if path is empty, None otherwise """ type_ = MessageType.Structure - elements = {structure.short_urn(): structure for structure in structures} + elements = {structure.short_urn: structure for structure in structures} if header is None: header = Header() diff --git a/src/pysdmx/model/__base.py b/src/pysdmx/model/__base.py index 1fac1167..d37dc794 100644 --- a/src/pysdmx/model/__base.py +++ b/src/pysdmx/model/__base.py @@ -241,6 +241,7 @@ def __post_init__(self) -> None: "Maintainable artefacts must reference an agency.", ) + @property def short_urn(self) -> str: """Returns the short URN for the artefact. diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 0b9b0168..1de90e55 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -107,7 +107,7 @@ def __get_single_structure( "Could not find any Structures in this message.", ) for structure in self.structures: - if structure.short_urn() == short_urn and isinstance( + if structure.short_urn == short_urn and isinstance( structure, type_ ): return structure diff --git a/tests/model/test_codelist.py b/tests/model/test_codelist.py index 35a2437b..c68698e0 100644 --- a/tests/model/test_codelist.py +++ b/tests/model/test_codelist.py @@ -156,4 +156,4 @@ def test_short_urn(id, name, agency, version, codes): id=id, name=name, agency=agency, items=codes, version=version ) - assert cl.short_urn() == f"Codelist={agency}:{id}({version})" + assert cl.short_urn == f"Codelist={agency}:{id}({version})" From a9af618a0ec3177aeb324c589e82ec52c0f6cdb3 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 12:27:44 +0100 Subject: [PATCH 47/62] Added property short_urn to DataStructureDefinition (sdmxtype must be DataStructure). Changed Submission to RegistryInterface. Added better documentation for structures formats. Fixed tests for io and csv. Signed-off-by: javier.hernandez --- src/pysdmx/io/enums.py | 2 +- src/pysdmx/io/input_processor.py | 2 +- src/pysdmx/io/reader.py | 32 ++++++------- src/pysdmx/model/dataflow.py | 5 ++ src/pysdmx/model/message.py | 4 +- tests/io/csv/sdmx10/reader/test_reader_v1.py | 27 ++++++----- tests/io/csv/sdmx20/reader/test_reader_v2.py | 49 +++++++++++--------- tests/io/test_input_processor.py | 10 ++-- 8 files changed, 71 insertions(+), 60 deletions(-) diff --git a/src/pysdmx/io/enums.py b/src/pysdmx/io/enums.py index 06b328a1..cb93d62c 100644 --- a/src/pysdmx/io/enums.py +++ b/src/pysdmx/io/enums.py @@ -9,7 +9,7 @@ class SDMXFormat(Enum): SDMX_ML_2_1_STRUCTURE = "SDMX-ML 2.1 Structure" SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC = "SDMX-ML 2.1 StructureSpecific" SDMX_ML_2_1_DATA_GENERIC = "SDMX-ML 2.1 Generic" - SDMX_ML_2_1_SUBMISSION = "SDMX-ML 2.1 Submission" + SDMX_ML_2_1_REGISTRY_INTERFACE = "SDMX-ML 2.1 Registry Interface" SDMX_ML_2_1_ERROR = "SDMX-ML 2.1 Error" SDMX_JSON_2 = "SDMX-JSON 2.0.0" FUSION_JSON = "FusionJSON" diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 4ab42bac..124b6266 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -53,7 +53,7 @@ def __get_sdmx_ml_flavour(infile: str) -> Tuple[str, SDMXFormat]: if ":structure" in flavour_check: return infile, SDMXFormat.SDMX_ML_2_1_STRUCTURE if ":registryinterface" in flavour_check: - return infile, SDMXFormat.SDMX_ML_2_1_SUBMISSION + return infile, SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE if ":error" in flavour_check: return infile, SDMXFormat.SDMX_ML_2_1_ERROR raise Invalid("Validation Error", "Cannot parse input as SDMX-ML.") diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 39374569..b8d84f81 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -26,8 +26,12 @@ def read_sdmx( ) -> Message: """Reads any SDMX message and returns a dictionary. - Supported metadata formats are: - - SDMX-ML 2.1 + Supported structures formats are: + - SDMX-ML 2.1 Structures + + Supported webservices submissions are: + - SDMX-ML 2.1 RegistryInterface (Submission) + - SDMX-ML 2.1 Error (raises an exception with the error content) Supported data formats are: - SDMX-ML 2.1 @@ -46,24 +50,24 @@ def read_sdmx( """ input_str, read_format = process_string_to_read(sdmx_document) - result_data = None - result_structures = None - result_submission = None + result_data = [] + result_structures = {} + result_submission = [] if read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE: # SDMX-ML 2.1 Structure - result_structures = read_structure(input_str) + result_structures = read_structure(input_str, validate=validate) elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: # SDMX-ML 2.1 Generic Data result_data = read_generic(input_str, validate=validate) elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: # SDMX-ML 2.1 Structure Specific Data - result_data = read_str_spe(input_str) - elif read_format == SDMXFormat.SDMX_ML_2_1_SUBMISSION: + result_data = read_str_spe(input_str, validate=validate) + elif read_format == SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE: # SDMX-ML 2.1 Submission - result_submission = read_sub(input_str) + result_submission = read_sub(input_str, validate=validate) elif read_format == SDMXFormat.SDMX_ML_2_1_ERROR: # SDMX-ML 2.1 Error - read_error(input_str) + read_error(input_str, validate=validate) elif read_format == SDMXFormat.SDMX_CSV_1_0: # SDMX-CSV 1.0 result_data = read_csv_v1(input_str) @@ -71,11 +75,7 @@ def read_sdmx( # SDMX-CSV 2.0 result_data = read_csv_v2(input_str) - if ( - result_data is None - and result_structures is None - and result_submission is None - ): + if not (result_data or result_structures or result_submission): raise Invalid("Empty SDMX Message") # Returning a Message class @@ -88,7 +88,7 @@ def read_sdmx( # TODO: Add here the Schema download for Datasets, based on structure # TODO: Ensure we have changed the signature of the data readers return Message(data=result_data) - elif read_format == SDMXFormat.SDMX_ML_2_1_SUBMISSION: + elif read_format == SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE: return Message(submission=result_submission) # TODO: Ensure we have changed the signature of the structure readers diff --git a/src/pysdmx/model/dataflow.py b/src/pysdmx/model/dataflow.py index a5a58b8b..25d8d996 100644 --- a/src/pysdmx/model/dataflow.py +++ b/src/pysdmx/model/dataflow.py @@ -452,6 +452,11 @@ def to_schema(self) -> Schema: version=self.version, ) + @property + def short_urn(self) -> str: + """Returns a short URN for the data structure.""" + return f"DataStructure={self.agency}:{self.id}({self.version})" + class Dataflow( MaintainableArtefact, diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 1de90e55..e91a31b8 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -107,9 +107,7 @@ def __get_single_structure( "Could not find any Structures in this message.", ) for structure in self.structures: - if structure.short_urn == short_urn and isinstance( - structure, type_ - ): + if structure.short_urn == short_urn: return structure raise NotFound( diff --git a/tests/io/csv/sdmx10/reader/test_reader_v1.py b/tests/io/csv/sdmx10/reader/test_reader_v1.py index 2bbf2908..a07bd202 100644 --- a/tests/io/csv/sdmx10/reader/test_reader_v1.py +++ b/tests/io/csv/sdmx10/reader/test_reader_v1.py @@ -28,17 +28,17 @@ def data_path_no_freq(): def test_reading_data_v1(data_path): with open(data_path, "r") as f: infile = f.read() - dataset_dict = read(infile) - assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict - df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + datasets = read(infile) + assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + df = datasets[0].data assert len(df) == 1000 assert "DATAFLOW" not in df.columns def test_reading_sdmx_csv_v1(data_path): - dataset_dict = read_sdmx(data_path).data - assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict - df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + datasets = read_sdmx(data_path).data + assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + df = datasets[0].data assert len(df) == 1000 assert "DATAFLOW" not in df.columns @@ -46,9 +46,9 @@ def test_reading_sdmx_csv_v1(data_path): def test_reading_sdmx_csv_v1_string(data_path): with open(data_path, "r") as f: infile = f.read() - dataset_dict = read_sdmx(infile).data - assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict - df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + datasets = read(infile) + assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + df = datasets[0].data assert len(df) == 1000 assert "DATAFLOW" not in df.columns @@ -63,8 +63,11 @@ def test_reading_data_v1_exception(data_path_exception): def test_reading_no_freq_v1(data_path_no_freq): with open(data_path_no_freq, "r") as f: infile = f.read() - dataset_dict = read(infile) - assert "DataFlow=WB:GCI(1.0):GlobalCompetitivenessIndex" in dataset_dict - df = dataset_dict["DataFlow=WB:GCI(1.0):GlobalCompetitivenessIndex"].data + datasets = read(infile) + assert ( + datasets[0].short_urn + == "DataFlow=WB:GCI(1.0):GlobalCompetitivenessIndex" + ) + df = datasets[0].data assert len(df) == 7 assert "DATAFLOW" not in df.columns diff --git a/tests/io/csv/sdmx20/reader/test_reader_v2.py b/tests/io/csv/sdmx20/reader/test_reader_v2.py index 495b2eb5..bda93833 100644 --- a/tests/io/csv/sdmx20/reader/test_reader_v2.py +++ b/tests/io/csv/sdmx20/reader/test_reader_v2.py @@ -68,9 +68,9 @@ def data_path_invalid_action(): def test_reading_data_v2(data_path): with open(data_path, "r") as f: infile = f.read() - dataset_dict = read(infile) - assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict - df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + datasets = read(infile) + assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + df = datasets[0].data assert len(df) == 1000 assert "STRUCTURE" not in df.columns assert "STRUCTURE_ID" not in df.columns @@ -78,9 +78,9 @@ def test_reading_data_v2(data_path): def test_reading_sdmx_csv_v2(data_path): - dataset_dict = read_sdmx(data_path).data - assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict - df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + datasets = read_sdmx(data_path).data + assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + df = datasets[0].data assert len(df) == 1000 assert "STRUCTURE" not in df.columns assert "STRUCTURE_ID" not in df.columns @@ -90,9 +90,9 @@ def test_reading_sdmx_csv_v2(data_path): def test_reading_sdmx_csv_v2_string(data_path): with open(data_path, "r") as f: infile = f.read() - dataset_dict = read_sdmx(infile).data - assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict - df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + datasets = read_sdmx(infile).data + assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + df = datasets[0].data assert len(df) == 1000 assert "STRUCTURE" not in df.columns assert "STRUCTURE_ID" not in df.columns @@ -109,9 +109,12 @@ def test_reading_v2_exception(data_path_exception): def test_reading_no_freq_v2(data_path_no_freq): with open(data_path_no_freq, "r") as f: infile = f.read() - dataset_dict = read(infile) - assert "DataFlow=WB:GCI(1.0):GlobalCompetitivenessIndex" in dataset_dict - df = dataset_dict["DataFlow=WB:GCI(1.0):GlobalCompetitivenessIndex"].data + datasets = read(infile) + assert ( + datasets[0].short_urn + == "DataFlow=WB:GCI(1.0):GlobalCompetitivenessIndex" + ) + df = datasets[0].data assert len(df) == 7 assert "STRUCTURE" not in df.columns assert "STRUCTURE_ID" not in df.columns @@ -121,9 +124,9 @@ def test_reading_no_freq_v2(data_path_no_freq): def test_reading_col_action(data_path_action): with open(data_path_action, "r") as f: infile = f.read() - dataset_dict = read(infile) - assert "DataFlow=BIS:BIS_DER(1.0)" in dataset_dict - df = dataset_dict["DataFlow=BIS:BIS_DER(1.0)"].data + datasets = read(infile) + assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + df = datasets[0].data assert len(df) == 1000 assert "STRUCTURE" not in df.columns assert "STRUCTURE_ID" not in df.columns @@ -132,10 +135,12 @@ def test_reading_col_action(data_path_action): def test_reading_more_structures(data_path_structures): with open(data_path_structures, "r") as f: infile = f.read() - dataset_dict = read(infile) - assert "DataFlow=ESTAT:DF_A(1.6.0)" in dataset_dict - assert "DataStructure=ESTAT:DSD_B(1.7.0)" in dataset_dict - assert "ProvisionAgreement=ESTAT:DPA_C(1.8.0)" in dataset_dict + datasets = read(infile) + assert len(datasets) == 3 + short_urns = [ds.short_urn for ds in datasets] + assert "DataFlow=ESTAT:DF_A(1.6.0)" in short_urns + assert "DataStructure=ESTAT:DSD_B(1.7.0)" in short_urns + assert "ProvisionAgreement=ESTAT:DPA_C(1.8.0)" in short_urns def test_reading_more_structures_exception(data_path_structures_exc): @@ -148,9 +153,9 @@ def test_reading_more_structures_exception(data_path_structures_exc): def test_reading_two_actions(data_path_two_actions): with open(data_path_two_actions, "r") as f: infile = f.read() - dataset_dict = read(infile) - assert "DataStructure=TEST:TEST_MD(1.0)" in dataset_dict - assert len(dataset_dict["DataStructure=TEST:TEST_MD(1.0)"].data) == 2 + datasets = read(infile) + assert datasets[0].short_urn == "DataStructure=TEST:TEST_MD(1.0)" + assert len(datasets[0].data) == 2 def test_reading_three_actions(data_path_three_actions): diff --git a/tests/io/test_input_processor.py b/tests/io/test_input_processor.py index 468d4008..3246450a 100644 --- a/tests/io/test_input_processor.py +++ b/tests/io/test_input_processor.py @@ -6,7 +6,7 @@ from pysdmx.errors import Invalid, NotImplemented from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read -from pysdmx.io.xml.sdmx21.reader import read_xml +from pysdmx.io.reader import read_sdmx @pytest.fixture @@ -81,7 +81,7 @@ def test_process_string_to_read_invalid_xml(invalid_xml): message = "This element is not expected." process_string_to_read(invalid_xml) with pytest.raises(Invalid, match=message): - read_xml(invalid_xml, validate=True) + read_sdmx(invalid_xml, validate=True) def test_process_string_to_read_invalid_type(): @@ -114,9 +114,9 @@ def test_check_csv_exception(): def test_process_string_to_read_invalid_allowed_error(invalid_message_xml): - message = "Cannot parse input as SDMX." - with pytest.raises(NotImplemented, match=message): - read_xml(invalid_message_xml, validate=False) + message = "Cannot parse input as SDMX-ML." + with pytest.raises(Invalid, match=message): + read_sdmx(invalid_message_xml, validate=False) def test_invalid_xml_flavour(): From 4cfcab765327ffcacffdfd4db519c79dbe2199db Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 13:14:06 +0100 Subject: [PATCH 48/62] Fixed tests on xml. Signed-off-by: javier.hernandez --- src/pysdmx/io/reader.py | 11 +- src/pysdmx/io/xml/sdmx21/__tokens.py | 4 +- tests/io/xml/sdmx21/reader/test_reader.py | 191 ++++++++++-------- .../io/xml/sdmx21/writer/test_data_writing.py | 26 ++- .../sdmx21/writer/test_structures_writing.py | 10 +- 5 files changed, 138 insertions(+), 104 deletions(-) diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index b8d84f81..0d50852c 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -15,8 +15,11 @@ from pysdmx.io.xml.sdmx21.reader.structure_specific import read as read_str_spe from pysdmx.io.xml.sdmx21.reader.submission import read as read_sub from pysdmx.model import Schema +from pysdmx.model.__base import ItemScheme +from pysdmx.model.dataflow import Dataflow, DataStructureDefinition from pysdmx.model.dataset import Dataset from pysdmx.model.message import Message +from pysdmx.model.submission import SubmissionResult from pysdmx.util import parse_short_urn @@ -50,9 +53,11 @@ def read_sdmx( """ input_str, read_format = process_string_to_read(sdmx_document) - result_data = [] - result_structures = {} - result_submission = [] + result_data: Sequence[Dataset] = [] + result_structures: Sequence[ + Union[ItemScheme, Dataflow, DataStructureDefinition] + ] = [] + result_submission: Sequence[SubmissionResult] = [] if read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE: # SDMX-ML 2.1 Structure result_structures = read_structure(input_str, validate=validate) diff --git a/src/pysdmx/io/xml/sdmx21/__tokens.py b/src/pysdmx/io/xml/sdmx21/__tokens.py index 056b7804..e275a4fd 100644 --- a/src/pysdmx/io/xml/sdmx21/__tokens.py +++ b/src/pysdmx/io/xml/sdmx21/__tokens.py @@ -64,9 +64,9 @@ LANG = "lang" XML_TEXT = "#text" STR_URL = "structureURL" -STR_URL_LOW = "structureUrl" +STR_URL_LOW = "structure_url" SER_URL = "serviceURL" -SER_URL_LOW = "serviceUrl" +SER_URL_LOW = "service_url" # General ANNOTATIONS = "Annotations" diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index 9d86179c..d07d7fc8 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -8,10 +8,11 @@ from pysdmx.io import read_sdmx from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read -from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.reader import read_xml -from pysdmx.io.xml.sdmx21.writer import writer as write_xml -from pysdmx.model import Contact +from pysdmx.io.xml.sdmx21.reader.error import read as read_error +from pysdmx.io.xml.sdmx21.reader.structure import read as read_structure +from pysdmx.io.xml.sdmx21.reader.submission import read as read_sub +from pysdmx.io.xml.sdmx21.writer.structure_specific import write +from pysdmx.model import AgencyScheme, Codelist, ConceptScheme, Contact from pysdmx.model.submission import SubmissionResult from pysdmx.model.vtl import Transformation @@ -61,12 +62,11 @@ def error_304_path(): def test_agency_scheme_read(agency_scheme_path): input_str, read_format = process_string_to_read(agency_scheme_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - result = read_xml(input_str, validate=True) + result = read_structure(input_str, validate=True) + assert isinstance(result[0], AgencyScheme) - assert "OrganisationSchemes" in result - agency_scheme = result["OrganisationSchemes"] - assert len(agency_scheme) == 1 - agency_sdmx = agency_scheme["AgencyScheme=SDMX:AGENCIES(1.0)"].items[0] + agency_scheme = result[0] + agency_sdmx = agency_scheme.items[0] assert agency_sdmx.id == "SDMX" assert agency_sdmx.name == "SDMX" @@ -74,12 +74,11 @@ def test_agency_scheme_read(agency_scheme_path): def test_code_list_read(codelist_path): input_str, read_format = process_string_to_read(codelist_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - result = read_xml(input_str, validate=True) + codelists = read_structure(input_str, validate=True) - assert "Codelists" in result - codelists = result["Codelists"] + assert isinstance(codelists[0], Codelist) assert len(codelists) == 5 - codelist_sdmx = codelists["Codelist=SDMX:CL_UNIT_MULT(1.0)"] + codelist_sdmx = [cl for cl in codelists if cl.id == "CL_UNIT_MULT"][0] assert codelist_sdmx.id == "CL_UNIT_MULT" assert ( codelist_sdmx.name == "code list for the Unit Multiplier (UNIT_MULT)" @@ -91,28 +90,28 @@ def test_code_list_read(codelist_path): def test_item_scheme_read(item_scheme_path): input_str, read_format = process_string_to_read(item_scheme_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - result = read_xml(input_str, validate=True) + result = read_structure(input_str, validate=True) - assert "OrganisationSchemes" in result - assert "Codelists" in result - assert "Concepts" in result + assert any(isinstance(r, Codelist) for r in result) + assert any(isinstance(r, AgencyScheme) for r in result) + assert any(isinstance(r, ConceptScheme) for r in result) # Agency Scheme (OrganisationSchemes) assertions - agency_scheme = result["OrganisationSchemes"] - assert len(agency_scheme) == 1 - agency_sdmx = agency_scheme["AgencyScheme=SDMX:AGENCIES(1.0)"].items[0] + agency_schemes = [r for r in result if isinstance(r, AgencyScheme)] + assert len(agency_schemes) == 1 + agency_sdmx = agency_schemes[0].items[0] assert agency_sdmx.id == "SDMX" assert agency_sdmx.name == "SDMX" - agency_uis = agency_scheme["AgencyScheme=SDMX:AGENCIES(1.0)"].items[2] + agency_uis = agency_schemes[0].items[2] assert agency_uis.id == "UIS" assert isinstance(agency_uis.contacts[0], Contact) assert agency_uis.contacts[0].emails == ["uis.datarequests@unesco.org"] # Codelist - codelists = result["Codelists"] + codelists = [r for r in result if isinstance(r, Codelist)] assert len(codelists) == 5 - codelist_sdmx = codelists["Codelist=SDMX:CL_UNIT_MULT(1.0)"] + codelist_sdmx = [cl for cl in codelists if cl.id == "CL_UNIT_MULT"][0] assert codelist_sdmx.id == "CL_UNIT_MULT" assert ( codelist_sdmx.name == "code list for the " @@ -122,11 +121,9 @@ def test_item_scheme_read(item_scheme_path): assert codelist_sdmx.items[0].name == "Units" # Concept - concepts = result["Concepts"] + concepts = [r for r in result if isinstance(r, ConceptScheme)] assert len(concepts) == 1 - concept_scheme_sdmx = concepts[ - ("ConceptScheme=" "SDMX:CROSS_DOMAIN_CONCEPTS(1.0)") - ] + concept_scheme_sdmx = concepts[0] assert concept_scheme_sdmx.id == "CROSS_DOMAIN_CONCEPTS" assert concept_scheme_sdmx.name == "SDMX Cross Domain Concept Scheme" assert concept_scheme_sdmx.items[0].id == "COLL_METHOD" @@ -135,21 +132,19 @@ def test_item_scheme_read(item_scheme_path): def test_submission_result(submission_path): input_str, read_format = process_string_to_read(submission_path) - assert read_format == SDMXFormat.SDMX_ML_2_1_SUBMISSION - result = read_xml(input_str, validate=True) + assert read_format == SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE + result = read_sub(input_str, validate=True) short_urn_1 = "DataStructure=BIS:BIS_DER(1.0)" short_urn_2 = "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" - assert short_urn_1 in result - submission_1 = result[short_urn_1] + submission_1 = result[0] assert isinstance(submission_1, SubmissionResult) assert submission_1.action == "Append" assert submission_1.short_urn == short_urn_1 assert submission_1.status == "Success" - assert short_urn_2 in result - submission_2 = result[short_urn_2] + submission_2 = result[1] assert isinstance(submission_2, SubmissionResult) assert submission_2.action == "Append" assert submission_2.short_urn == short_urn_2 @@ -160,7 +155,7 @@ def test_error_304(error_304_path): input_str, read_format = process_string_to_read(error_304_path) assert read_format == SDMXFormat.SDMX_ML_2_1_ERROR with pytest.raises(Invalid) as e: - read_xml(input_str, validate=False, mode=MessageType.Error) + read_error(input_str, validate=False) reference_title = ( "304: Either no structures were submitted,\n" " or the submitted structures " @@ -171,11 +166,14 @@ def test_error_304(error_304_path): assert e.value.description == reference_title -def test_error_message_with_different_mode(error_304_path): - input_str, read_format = process_string_to_read(error_304_path) - assert read_format == SDMXFormat.SDMX_ML_2_1_ERROR - with pytest.raises(Invalid, match="Unable to parse sdmx file as"): - read_xml(input_str, validate=True, mode=MessageType.Submission) +def test_error_message_with_different_mode(agency_scheme_path): + input_str, read_format = process_string_to_read(agency_scheme_path) + assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE + with pytest.raises( + Invalid, + match="This SDMX document is not an SDMX-ML 2.1 Error message.", + ): + read_error(input_str, validate=True) @pytest.mark.parametrize( @@ -195,9 +193,12 @@ def test_reading_validation(samples_folder, filename): SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, ) - result = read_xml(input_str, validate=True) + result = read_sdmx(input_str, validate=True).data assert result is not None - data = result["DataStructure=BIS:BIS_DER(1.0)"].data + assert len(result) == 1 + dataset = result[0] + assert dataset.short_urn == "DataStructure=BIS:BIS_DER(1.0)" + data = dataset.data assert data.shape == (1000, 20) @@ -214,7 +215,7 @@ def test_reading_validation(samples_folder, filename): def test_reading_validation_read_sdmx(samples_folder, filename): result = read_sdmx(samples_folder / filename, validate=True).data assert result is not None - data = result["DataStructure=BIS:BIS_DER(1.0)"].data + data = result[0].data assert data.shape == (1000, 20) @@ -223,9 +224,10 @@ def test_dataflow(samples_folder): data_path = samples_folder / "dataflow.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC - result = read_xml(input_str, validate=True) - assert "DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result - data_dataflow = result["DataFlow=BIS:WEBSTATS_DER_DATAFLOW(1.0)"].data + result = read_sdmx(input_str, validate=True).data + assert len(result) == 1 + dataset = result[0] + data_dataflow = dataset.data num_rows = len(data_dataflow) num_columns = data_dataflow.shape[1] assert num_rows > 0 @@ -242,24 +244,28 @@ def test_structure_ref_urn(samples_folder): data_path = samples_folder / "structure_ref_urn.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC - result = read_xml(input_str, validate=True) - assert "DataStructure=BIS:BIS_DER(1.0)" in result + result = read_sdmx(input_str, validate=True).data + assert len(result) == 1 + dataset = result[0] + assert dataset.short_urn == "DataStructure=BIS:BIS_DER(1.0)" def test_partial_datastructure(samples_folder): data_path = samples_folder / "partial_datastructure.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - result = read_xml(input_str, validate=True) - assert "DataStructure=BIS:BIS_DER(1.0)" in result["DataStructures"] + result = read_sdmx(input_str, validate=True).structures + assert "DataStructure=BIS:BIS_DER(1.0)" in [ds.short_urn for ds in result] def test_dataflow_structure(samples_folder): data_path = samples_folder / "dataflow_structure.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - result = read_xml(input_str, validate=True) - assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result["Dataflows"] + result = read_sdmx(input_str, validate=True).structures + assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in [ + ds.short_urn for ds in result + ] def test_dataflow_structure_read_sdmx(samples_folder): @@ -267,15 +273,19 @@ def test_dataflow_structure_read_sdmx(samples_folder): samples_folder / "dataflow_structure.xml", validate=True, ).structures - assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result["Dataflows"] + assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in [ + ds.short_urn for ds in result + ] def test_partial_dataflow_structure(samples_folder): data_path = samples_folder / "partial_dataflow_structure.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - result = read_xml(input_str, validate=True) - assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in result["Dataflows"] + result = read_sdmx(input_str, validate=True).structures + assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in [ + ds.short_urn for ds in result + ] def test_header_structure_provision_agrement(samples_folder): @@ -283,7 +293,7 @@ def test_header_structure_provision_agrement(samples_folder): input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC with pytest.raises(NotImplemented, match="ProvisionAgrement"): - read_xml(input_str, validate=True) + read_sdmx(input_str, validate=True) def test_stref_dif_strid(samples_folder): @@ -292,23 +302,23 @@ def test_stref_dif_strid(samples_folder): assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC with pytest.raises( Exception, - match="Cannot find the structure reference of this dataset:A", + match="Dataset Structure Reference A not found in the Header", ): - read_xml(input_str, validate=True) + read_sdmx(input_str, validate=True) def test_gen_all_no_atts(samples_folder): data_path = samples_folder / "gen_all_no_atts.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC - read_xml(input_str, validate=True) + read_sdmx(input_str, validate=True) def test_gen_ser_no_atts(samples_folder): data_path = samples_folder / "gen_ser_no_atts.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC - read_xml(input_str, validate=True) + read_sdmx(input_str, validate=True) @pytest.mark.parametrize( @@ -325,8 +335,9 @@ def test_ser_no_obs(samples_folder, filename): assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC else: assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC - result = read_xml(input_str, validate=True) - df = result["DataStructure=BIS:BIS_DER(1.0)"].data + result = read_sdmx(input_str, validate=True).data + assert len(result) == 1 + df = result[0].data assert df.shape == (1, 16) @@ -341,16 +352,17 @@ def test_ser_no_obs(samples_folder, filename): ], ) def test_chunks(samples_folder, filename): - pysdmx.io.xml.sdmx21.reader.data_read.READING_CHUNKSIZE = 100 + pysdmx.io.xml.sdmx21.reader.__data_aux.READING_CHUNKSIZE = 100 data_path = samples_folder / filename input_str, read_format = process_string_to_read(data_path) if "gen" in filename: assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC else: assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC - result = read_xml(input_str, validate=True) + result = read_sdmx(input_str, validate=True).data assert result is not None - data = result["DataStructure=BIS:BIS_DER(1.0)"].data + assert len(result) == 1 + data = result[0].data num_rows = len(data) num_columns = data.shape[1] assert num_rows > 0 @@ -365,18 +377,22 @@ def test_read_write_structure_specific_all(samples_folder): data_path = samples_folder / "str_all.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC - content = read_xml(input_str, validate=True) - assert content is not None - assert "DataStructure=BIS:BIS_DER(1.0)" in content - shape_read = content["DataStructure=BIS:BIS_DER(1.0)"].data.shape + datasets = read_sdmx(input_str, validate=True).data + assert datasets is not None + assert len(datasets) == 1 + dataset = datasets[0] + assert dataset.short_urn == "DataStructure=BIS:BIS_DER(1.0)" + shape_read = dataset.data.shape assert shape_read == (1000, 20) - result = write_xml(content, MessageType.StructureSpecificDataSet) + result = write(datasets) # Check if it is well formed using validate=True - content_result = read_xml(result, validate=True) + datasets_written = read_sdmx(result, validate=True).data + # Check we read the same data - assert content_result is not None - assert "DataStructure=BIS:BIS_DER(1.0)" in content_result - data_written = content_result["DataStructure=BIS:BIS_DER(1.0)"].data + assert datasets_written is not None + assert len(datasets_written) == 1 + assert datasets_written[0].short_urn == "DataStructure=BIS:BIS_DER(1.0)" + data_written = datasets_written[0].data shape_written = data_written.shape assert shape_read == shape_written @@ -385,12 +401,12 @@ def test_vtl_transformation_scheme(samples_folder): data_path = samples_folder / "transformation_scheme.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - result = read_xml(input_str, validate=True) - assert "Transformations" in result - assert len(result["Transformations"]) == 1 - transformation_scheme = result["Transformations"][ - "TransformationScheme=SDMX:TEST(1.0)" - ] + result = read_sdmx(input_str, validate=True).structures + + assert result is not None + assert len(result) == 1 + + transformation_scheme = result[0] assert transformation_scheme.id == "TEST" assert transformation_scheme.name == "TEST" assert transformation_scheme.description == "TEST Transformation Scheme" @@ -406,15 +422,20 @@ def test_vtl_transformation_scheme(samples_folder): def test_estat_metadata(estat_metadata_path): input_str, sdmx_format = process_string_to_read(estat_metadata_path) assert sdmx_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - result = read_xml(input_str, validate=True) - assert len(result["Codelists"]) == 6 - assert len(result["Concepts"]) == 1 + result = read_sdmx(input_str, validate=True) + codelists = result.get_codelists() + concepts = result.get_concept_schemes() + assert len(codelists) == 6 + assert len(concepts) == 1 def test_estat_data(estat_data_path): input_str, sdmx_format = process_string_to_read(estat_data_path) assert sdmx_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC - result = read_xml(input_str, validate=False) - assert "DataFlow=ESTAT:NRG_BAL_S(1.0)" in result - assert len(result["DataFlow=ESTAT:NRG_BAL_S(1.0)"].data) == 33 + result = read_sdmx(input_str, validate=False).data + assert result is not None + assert len(result) == 1 + dataset = result[0] + assert dataset.short_urn == "DataFlow=ESTAT:NRG_BAL_S(1.0)" + assert len(dataset.data) == 33 diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index 2b0f7675..a5732de7 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -6,10 +6,10 @@ import pysdmx.io.xml.sdmx21.writer.config from pysdmx.errors import Invalid +from pysdmx.io import read_sdmx from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.enums import MessageType -from pysdmx.io.xml.sdmx21.reader import read_xml from pysdmx.io.xml.sdmx21.writer.generic import write as write_gen from pysdmx.io.xml.sdmx21.writer.structure_specific import ( write as write_str_spec, @@ -138,13 +138,18 @@ def test_data_write_read( dimension_at_observation=dimension_at_observation, ) # Read the result to check for formal errors - result_msg = read_xml(result, validate=True) - assert "DataStructure=MD:TEST(1.0)" in result_msg + result_data = read_sdmx(result, validate=True).data + assert result_data is not None + assert len(result_data) == 1 + dataset = result_data[0] + assert dataset.short_urn == "DataStructure=MD:TEST(1.0)" # Read the reference to compare with the result infile, _ = process_string_to_read(samples_folder_path / filename) - reference_msg = read_xml(infile, validate=True) - result_data = result_msg["DataStructure=MD:TEST(1.0)"].data - reference_data = reference_msg["DataStructure=MD:TEST(1.0)"].data + reference_msg = read_sdmx(infile, validate=True) + result_data = dataset.data + reference_data = reference_msg.get_dataset( + "DataStructure=MD:TEST(1.0)" + ).data assert result_data.shape == (3, 5) @@ -227,9 +232,12 @@ def test_data_write_df( dimension_at_observation=dimension_at_observation, ) # Read the result to check for formal errors - result_msg = read_xml(result, validate=True) - assert "DataStructure=MD:TEST(1.0)" in result_msg - result_data = result_msg["DataStructure=MD:TEST(1.0)"].data + result_msg = read_sdmx(result, validate=True).data + assert result_msg is not None + assert len(result_msg) == 1 + dataset = result_msg[0] + assert dataset.short_urn == "DataStructure=MD:TEST(1.0)" + result_data = dataset.data assert result_data.shape == (50, 3) diff --git a/tests/io/xml/sdmx21/writer/test_structures_writing.py b/tests/io/xml/sdmx21/writer/test_structures_writing.py index 74d51993..ae881f22 100644 --- a/tests/io/xml/sdmx21/writer/test_structures_writing.py +++ b/tests/io/xml/sdmx21/writer/test_structures_writing.py @@ -6,8 +6,8 @@ from pysdmx.errors import NotImplemented from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read -from pysdmx.io.xml import read -from pysdmx.io.xml.sdmx21.reader.__utils import CON +from pysdmx.io.xml.sdmx21.__tokens import CON +from pysdmx.io.xml.sdmx21.reader.structure import read from pysdmx.io.xml.sdmx21.writer.error import write as write_err from pysdmx.io.xml.sdmx21.writer.structure import write from pysdmx.model import Agency, Code, Codelist, Concept, ConceptScheme, Facets @@ -451,11 +451,11 @@ def test_bis_der(bis_sample, bis_header): def test_group_deletion(groups_sample, header): content, read_format = process_string_to_read(groups_sample) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE - read_result = read_xml(content, validate=True) - write_result = writer( + read_result = read(content, validate=True) + write_result = write( read_result, header=header, prettyprint=True, ) assert "Groups" not in write_result - assert any("BIS:BIS_DER(1.0)" in e.short_urn() for e in read_result) + assert any("BIS:BIS_DER(1.0)" in e.short_urn for e in read_result) From 2363a61cc0bfca1e24c31edfbeb95b5e61258c54 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 13:39:51 +0100 Subject: [PATCH 49/62] Fixed message tests. Signed-off-by: javier.hernandez --- src/pysdmx/model/message.py | 17 ++--- tests/model/test_message.py | 121 +++++++++--------------------------- 2 files changed, 39 insertions(+), 99 deletions(-) diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index e91a31b8..68c39387 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -19,6 +19,7 @@ from msgspec import Struct from pysdmx.errors import Invalid, NotFound +from pysdmx.model import AgencyScheme from pysdmx.model.__base import ItemScheme from pysdmx.model.code import Codelist from pysdmx.model.concept import ConceptScheme @@ -88,7 +89,9 @@ def __post_init__(self) -> None: def __get_elements(self, type_: Type[Any]) -> List[Any]: """Returns a list of elements of a specific type.""" if self.structures is None: - return [] + raise NotFound( + f"No {type_.__name__} found in message.", + ) structures = [] for element in self.structures: if isinstance(element, type_): @@ -111,13 +114,13 @@ def __get_single_structure( return structure raise NotFound( - f"No {type_} with Short URN {short_urn} found in content", + f"No {type_.__name__} with Short URN {short_urn} found in content", "Could not find the requested element.", ) - def get_organisation_schemes(self) -> List[ItemScheme]: - """Returns the OrganisationSchemes.""" - return self.__get_elements(ItemScheme) + def get_agency_schemes(self) -> List[AgencyScheme]: + """Returns the AgencySchemes.""" + return self.__get_elements(AgencyScheme) def get_codelists(self) -> List[Codelist]: """Returns the Codelists.""" @@ -137,9 +140,9 @@ def get_dataflows(self) -> List[Dataflow]: """Returns the Dataflows.""" return self.__get_elements(Dataflow) - def get_organisation_scheme(self, short_urn: str) -> ItemScheme: + def get_organisation_scheme(self, short_urn: str) -> AgencyScheme: """Returns a specific OrganisationScheme.""" - return self.__get_single_structure(ItemScheme, short_urn) + return self.__get_single_structure(AgencyScheme, short_urn) def get_codelist(self, short_urn: str) -> Codelist: """Returns a specific Codelist.""" diff --git a/tests/model/test_message.py b/tests/model/test_message.py index 032cf87b..6fea905b 100644 --- a/tests/model/test_message.py +++ b/tests/model/test_message.py @@ -1,7 +1,7 @@ import pytest from pysdmx.errors import Invalid, NotFound -from pysdmx.model.__base import ItemScheme +from pysdmx.model import AgencyScheme from pysdmx.model.code import Codelist from pysdmx.model.concept import ConceptScheme from pysdmx.model.dataflow import Components, Dataflow, DataStructureDefinition @@ -15,18 +15,10 @@ def test_initialization(): assert message.data == {} -def test_get_organisation(): - org1 = ItemScheme(id="orgs1", agency="org1") - message = Message( - { - "OrganisationSchemes": { - "AgencyScheme=org1:orgs1(1.0)": org1, - } - } - ) - assert message.get_organisation_schemes() == { - "AgencyScheme=org1:orgs1(1.0)": org1, - } +def test_get_agency_scheme(): + org1 = AgencyScheme(id="orgs1", agency="org1") + message = Message([org1]) + assert message.get_agency_schemes() == [org1] assert ( message.get_organisation_scheme("AgencyScheme=org1:orgs1(1.0)") == org1 @@ -35,32 +27,16 @@ def test_get_organisation(): def test_get_codelists(): cl1 = Codelist(id="cl1", agency="cl1") - message = Message( - { - "Codelists": { - "Codelist=cl1:cl1(1.0)": cl1, - } - } - ) - assert message.get_codelists() == { - "Codelist=cl1:cl1(1.0)": cl1, - } + message = Message([cl1]) + assert message.get_codelists() == [cl1] assert message.get_codelist("Codelist=cl1:cl1(1.0)") == cl1 def test_get_concepts(): cs1 = ConceptScheme(id="cs1", agency="cs1") - message = Message( - { - "Concepts": { - "ConceptScheme=cs1:cs1(1.0)": cs1, - } - } - ) - assert message.get_concept_schemes() == { - "ConceptScheme=cs1:cs1(1.0)": cs1, - } + message = Message([cs1]) + assert message.get_concept_schemes() == [cs1] assert message.get_concept_scheme("ConceptScheme=cs1:cs1(1.0)") == cs1 @@ -70,20 +46,10 @@ def test_get_data_structure_definitions(): id="dsd1", agency="dsd1", components=Components([]) ) - message = Message( - { - "DataStructures": { - "DataStructureDefinition=dsd1:dsd1(1.0)": dsd1, - } - } - ) - assert message.get_data_structure_definitions() == { - "DataStructureDefinition=dsd1:dsd1(1.0)": dsd1, - } + message = Message([dsd1]) + assert message.get_data_structure_definitions() == [dsd1] assert ( - message.get_data_structure_definition( - "DataStructureDefinition" "=dsd1:dsd1(1.0)" - ) + message.get_data_structure_definition("DataStructure=dsd1:dsd1(1.0)") == dsd1 ) @@ -91,23 +57,15 @@ def test_get_data_structure_definitions(): def test_get_dataflows(): df1 = Dataflow(id="df1", agency="df1") - message = Message( - { - "Dataflows": { - "Dataflow=dsd1:dsd1(1.0)": df1, - } - } - ) - assert message.get_dataflows() == { - "Dataflow=dsd1:dsd1(1.0)": df1, - } + message = Message([df1]) + assert message.get_dataflows() == [df1] - assert message.get_dataflow("Dataflow=dsd1:dsd1(1.0)") == df1 + assert message.get_dataflow("Dataflow=df1:df1(1.0)") == df1 def test_get_datasets(): ds = Dataset(structure="DataStructure=ds1:ds1(1.0)") - message = Message(None, {"DataStructure=ds1:ds1(1.0)": ds}) + message = Message(None, [ds]) assert message.get_datasets() == [ds] assert message.get_dataset("DataStructure=ds1:ds1(1.0)") == ds @@ -130,33 +88,27 @@ def test_cannot_get_datasets(): def test_cannot_get_dataset(): - message = Message( - data={ - "DataStructure=ds1:ds1(1.0)": Dataset( - structure="DataStructure=ds1:ds1(1.0)" - ) - } - ) + message = Message(data=[Dataset(structure="DataStructure=ds1:ds1(1.0)")]) with pytest.raises(NotFound): message.get_dataset("DataStructure=ds2:ds2(1.0)") def test_empty_get_elements(): - message = Message({}) + message = Message() with pytest.raises(NotFound) as exc_info: - message.get_organisation_schemes() + message.get_agency_schemes() - assert "No OrganisationSchemes found" in str(exc_info.value.title) + assert "No AgencyScheme found" in str(exc_info.value.title) with pytest.raises(NotFound) as exc_info: message.get_codelists() - assert "No Codelists found" in str(exc_info.value.title) + assert "No Codelist found" in str(exc_info.value.title) with pytest.raises(NotFound) as exc_info: message.get_concept_schemes() - assert "No Concepts found" in str(exc_info.value.title) + assert "No ConceptScheme found" in str(exc_info.value.title) def test_empty_get_element_by_short_urn(): @@ -164,23 +116,23 @@ def test_empty_get_element_by_short_urn(): with pytest.raises(NotFound) as exc_info: message.get_organisation_scheme("AgencyScheme=org1:orgs1(1.0)") - assert "No OrganisationSchemes found" in str(exc_info.value.title) + assert "No AgencyScheme with Short URN" in str(exc_info.value.title) with pytest.raises(NotFound) as exc_info: message.get_codelist("Codelist=cl1:cl1(1.0)") - assert "No Codelists found" in str(exc_info.value.title) + assert "No Codelist with Short URN" in str(exc_info.value.title) with pytest.raises(NotFound) as exc_info: message.get_concept_scheme("ConceptScheme=cs1:cs1(1.0)") - assert "No Concepts found" in str(exc_info.value.title) + assert "No ConceptScheme with Short URN" in str(exc_info.value.title) def test_invalid_get_element_by_short_urn(): - message = Message({"OrganisationSchemes": {}}) + message = Message([]) - e_m = "No OrganisationSchemes with Short URN" + e_m = "No AgencyScheme with Short URN" with pytest.raises(NotFound) as exc_info: message.get_organisation_scheme("AgencyScheme=org12:orgs1(1.0)") @@ -188,22 +140,7 @@ def test_invalid_get_element_by_short_urn(): def test_invalid_initialization_content_key(): - exc_message = "Invalid content type: Invalid" - with pytest.raises(Invalid) as exc_info: - Message({"Invalid": {}}) - assert exc_message in str(exc_info.value.title) - - -@pytest.mark.parametrize( - ("key", "value"), - [ - ("OrganisationSchemes", {"AgencyScheme=org1:orgs1(1.0)": "invalid"}), - ("Codelists", {"Codelist=cl1:cl1(1.0)": "invalid"}), - ("Concepts", {"ConceptScheme=cs1:cs1(1.0)": "invalid"}), - ], -) -def test_invalid_initialization_content_value(key, value): - exc_message = f"Invalid content value type: str for {key}" + exc_message = "Invalid structure: Dataset" with pytest.raises(Invalid) as exc_info: - Message({key: value}) + Message([Dataset(structure="DataStructure=ds1:ds1(1.0)")]) assert exc_message in str(exc_info.value.title) From 885f1af7d86cba7e084aa82e73efc9b152a824dc Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 13:53:19 +0100 Subject: [PATCH 50/62] Removed inconsistencies on SDMX-CSV writers by adding the datasets as a list. Signed-off-by: javier.hernandez --- src/pysdmx/io/csv/sdmx10/writer/__init__.py | 35 +++++++------ src/pysdmx/io/csv/sdmx20/writer/__init__.py | 52 +++++++++++--------- tests/io/csv/sdmx10/writer/test_writer_v1.py | 4 +- tests/io/csv/sdmx20/writer/test_writer_v2.py | 6 +-- 4 files changed, 56 insertions(+), 41 deletions(-) diff --git a/src/pysdmx/io/csv/sdmx10/writer/__init__.py b/src/pysdmx/io/csv/sdmx10/writer/__init__.py index a740e302..e8ee2211 100644 --- a/src/pysdmx/io/csv/sdmx10/writer/__init__.py +++ b/src/pysdmx/io/csv/sdmx10/writer/__init__.py @@ -1,7 +1,7 @@ """SDMX 1.0 CSV writer module.""" from copy import copy -from typing import Optional +from typing import Optional, Sequence import pandas as pd @@ -9,27 +9,34 @@ def writer( - dataset: PandasDataset, output_path: Optional[str] = None + datasets: Sequence[PandasDataset], output_path: Optional[str] = None ) -> Optional[str]: - """Converts a dataset to an SDMX CSV format. + """Write data to SDMX-CSV 1.0 format. Args: - dataset: dataset - output_path: output_path + datasets: List of datasets to write. + Must have the same components. + output_path: Path to write the data to. + If None, the data is returned as a string. Returns: - SDMX CSV data as a string + SDMX CSV data as a string, if output_path is None. """ # Link to pandas.to_csv documentation on sphinx: # https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.to_csv.html # Create a copy of the dataset - df: pd.DataFrame = copy(dataset.data) - df.insert(0, "DATAFLOW", dataset.short_urn.split("=")[1]) - - # Add additional attributes to the dataset - for k, v in dataset.attributes.items(): - df[k] = v - + dataframes = [] + for dataset in datasets: + df: pd.DataFrame = copy(dataset.data) + df.insert(0, "DATAFLOW", dataset.short_urn.split("=")[1]) + + # Add additional attributes to the dataset + for k, v in dataset.attributes.items(): + df[k] = v + dataframes.append(df) + + # Concatenate the dataframes + all_data = pd.concat(dataframes, ignore_index=True, axis=0) # Return the SDMX CSV data as a string - return df.to_csv(output_path, index=False, header=True) + return all_data.to_csv(output_path, index=False, header=True) diff --git a/src/pysdmx/io/csv/sdmx20/writer/__init__.py b/src/pysdmx/io/csv/sdmx20/writer/__init__.py index ea97d4c7..1dac9848 100644 --- a/src/pysdmx/io/csv/sdmx20/writer/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/writer/__init__.py @@ -1,7 +1,7 @@ """SDMX 2.0 CSV writer module.""" from copy import copy -from typing import Optional +from typing import Optional, Sequence import pandas as pd @@ -10,38 +10,46 @@ def writer( - dataset: PandasDataset, output_path: Optional[str] = None + datasets: Sequence[PandasDataset], output_path: Optional[str] = None ) -> Optional[str]: - """Converts a dataset to an SDMX CSV format. + """Write data to SDMX-CSV 2.0 format. Args: - dataset: dataset - output_path: output_path + datasets: List of datasets to write. + Must have the same components. + output_path: Path to write the data to. + If None, the data is returned as a string. Returns: - SDMX CSV data as a string + SDMX CSV data as a string, if output_path is None. """ # Link to pandas.to_csv documentation on sphinx: # https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.to_csv.html - # Create a copy of the dataset - df: pd.DataFrame = copy(dataset.data) + dataframes = [] + for dataset in datasets: + # Create a copy of the dataset + df: pd.DataFrame = copy(dataset.data) - # Add additional attributes to the dataset - for k, v in dataset.attributes.items(): - df[k] = v + # Add additional attributes to the dataset + for k, v in dataset.attributes.items(): + df[k] = v - structure_ref, unique_id = dataset.short_urn.split("=", maxsplit=1) - if structure_ref in ["DataStructure", "DataFlow"]: - structure_ref = structure_ref.lower() - else: - structure_ref = "dataprovision" + structure_ref, unique_id = dataset.short_urn.split("=", maxsplit=1) + if structure_ref in ["DataStructure", "DataFlow"]: + structure_ref = structure_ref.lower() + else: + structure_ref = "dataprovision" - # Insert two columns at the beginning of the data set - df.insert(0, "STRUCTURE", structure_ref) - df.insert(1, "STRUCTURE_ID", unique_id) - action_value = SDMX_CSV_ACTION_MAPPER[dataset.action] - df.insert(2, "ACTION", action_value) + # Insert two columns at the beginning of the data set + df.insert(0, "STRUCTURE", structure_ref) + df.insert(1, "STRUCTURE_ID", unique_id) + action_value = SDMX_CSV_ACTION_MAPPER[dataset.action] + df.insert(2, "ACTION", action_value) + + dataframes.append(df) + + all_data = pd.concat(dataframes, ignore_index=True, axis=0) # Convert the dataset into a csv file - return df.to_csv(output_path, index=False, header=True) + return all_data.to_csv(output_path, index=False, header=True) diff --git a/tests/io/csv/sdmx10/writer/test_writer_v1.py b/tests/io/csv/sdmx10/writer/test_writer_v1.py index ec1f57a9..972b4e92 100644 --- a/tests/io/csv/sdmx10/writer/test_writer_v1.py +++ b/tests/io/csv/sdmx10/writer/test_writer_v1.py @@ -34,7 +34,7 @@ def test_to_sdmx_csv_writing(data_path, data_path_reference): structure=urn, ) dataset.data = dataset.data.astype("str") - result_sdmx_csv = writer(dataset) + result_sdmx_csv = writer([dataset]) result_df = pd.read_csv(StringIO(result_sdmx_csv)).astype(str) reference_df = pd.read_csv(data_path_reference).astype(str) pd.testing.assert_frame_equal( @@ -52,7 +52,7 @@ def test_writer_attached_attrs(data_path, data_path_reference_atch_atts): structure=urn, ) dataset.data = dataset.data.astype("str") - result_sdmx_csv = writer(dataset) + result_sdmx_csv = writer([dataset]) result_df = pd.read_csv(StringIO(result_sdmx_csv)).astype(str) reference_df = pd.read_csv(data_path_reference_atch_atts).astype(str) pd.testing.assert_frame_equal( diff --git a/tests/io/csv/sdmx20/writer/test_writer_v2.py b/tests/io/csv/sdmx20/writer/test_writer_v2.py index 00306c62..e740f3c3 100644 --- a/tests/io/csv/sdmx20/writer/test_writer_v2.py +++ b/tests/io/csv/sdmx20/writer/test_writer_v2.py @@ -44,7 +44,7 @@ def test_to_sdmx_csv_writing(data_path, data_path_reference): structure=urn, ) dataset.data = dataset.data.astype("str") - result_sdmx = writer(dataset) + result_sdmx = writer([dataset]) result_df = pd.read_csv(StringIO(result_sdmx)).astype(str) reference_df = pd.read_csv(data_path_reference).astype(str) pd.testing.assert_frame_equal( @@ -61,7 +61,7 @@ def test_writer_attached_attrs(data_path, data_path_reference_attch_atts): structure="DataStructure=MD:DS1(2.0)", ) dataset.data = dataset.data.astype(str) - result_sdmx = writer(dataset) + result_sdmx = writer([dataset]) result_df = pd.read_csv(StringIO(result_sdmx)).astype(str) reference_df = pd.read_csv(data_path_reference_attch_atts).astype(str) pd.testing.assert_frame_equal( @@ -79,7 +79,7 @@ def test_writer_with_action(data_path, data_path_reference_action): action=ActionType.Replace, ) dataset.data = dataset.data.astype(str) - result_sdmx = writer(dataset) + result_sdmx = writer([dataset]) result_df = pd.read_csv(StringIO(result_sdmx)).astype(str) reference_df = pd.read_csv(data_path_reference_action).astype(str) pd.testing.assert_frame_equal( From 3a18798295d23b50ae9a33d147357830e0d67e14 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 17:01:28 +0100 Subject: [PATCH 51/62] Cleaned up code. Added tests for Coverage. Signed-off-by: javier.hernandez --- src/pysdmx/io/csv/sdmx10/reader/__init__.py | 2 +- src/pysdmx/io/csv/sdmx20/reader/__init__.py | 4 +- src/pysdmx/io/csv/sdmx20/writer/__init__.py | 2 +- src/pysdmx/io/reader.py | 70 +- src/pysdmx/io/xml/sdmx21/reader/__data_aux.py | 2 +- src/pysdmx/io/xml/sdmx21/reader/structure.py | 7 +- src/pysdmx/io/xml/sdmx21/writer/structure.py | 10 +- src/pysdmx/model/message.py | 4 +- tests/io/csv/sdmx10/reader/test_reader_v1.py | 8 +- tests/io/csv/sdmx10/writer/test_writer_v1.py | 4 +- tests/io/csv/sdmx20/reader/test_reader_v2.py | 12 +- tests/io/samples/data_dataflow.xml | 4031 +++++++++++++++++ tests/io/samples/data_wrong_dataflow.xml | 4031 +++++++++++++++++ tests/io/samples/data_wrong_datastructure.xml | 43 + .../samples/dataflow_structure_children.xml | 859 ++++ ...xml => dataflow_structure_no_children.xml} | 0 tests/io/test_general_reader.py | 71 +- ...xml => dataflow_structure_no_children.xml} | 0 tests/io/xml/sdmx21/reader/test_reader.py | 44 +- tests/model/test_message.py | 10 +- 20 files changed, 9140 insertions(+), 74 deletions(-) create mode 100644 tests/io/samples/data_dataflow.xml create mode 100644 tests/io/samples/data_wrong_dataflow.xml create mode 100644 tests/io/samples/data_wrong_datastructure.xml create mode 100644 tests/io/samples/dataflow_structure_children.xml rename tests/io/samples/{dataflow.xml => dataflow_structure_no_children.xml} (100%) rename tests/io/xml/sdmx21/reader/samples/{dataflow_structure.xml => dataflow_structure_no_children.xml} (100%) diff --git a/src/pysdmx/io/csv/sdmx10/reader/__init__.py b/src/pysdmx/io/csv/sdmx10/reader/__init__.py index 50993a4f..8443c80c 100644 --- a/src/pysdmx/io/csv/sdmx10/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx10/reader/__init__.py @@ -14,7 +14,7 @@ def __generate_dataset_from_sdmx_csv(data: pd.DataFrame) -> PandasDataset: structure_id = data["DATAFLOW"].iloc[0] # Drop 'DATAFLOW' column from DataFrame df_csv = data.drop(["DATAFLOW"], axis=1) - urn = f"DataFlow={structure_id}" + urn = f"Dataflow={structure_id}" # Extract dataset attributes from sdmx-csv (all values are the same) attributes = { diff --git a/src/pysdmx/io/csv/sdmx20/reader/__init__.py b/src/pysdmx/io/csv/sdmx20/reader/__init__.py index 3653b45c..00fb63f8 100644 --- a/src/pysdmx/io/csv/sdmx20/reader/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/reader/__init__.py @@ -50,8 +50,8 @@ def __generate_dataset_from_sdmx_csv(data: pd.DataFrame) -> PandasDataset: if structure_type == "DataStructure".lower(): urn = f"DataStructure={structure_id}" - elif structure_type == "DataFlow".lower(): - urn = f"DataFlow={structure_id}" + elif structure_type == "Dataflow".lower(): + urn = f"Dataflow={structure_id}" elif structure_type == "dataprovision": urn = f"ProvisionAgreement={structure_id}" else: diff --git a/src/pysdmx/io/csv/sdmx20/writer/__init__.py b/src/pysdmx/io/csv/sdmx20/writer/__init__.py index 1dac9848..096de37c 100644 --- a/src/pysdmx/io/csv/sdmx20/writer/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/writer/__init__.py @@ -36,7 +36,7 @@ def writer( df[k] = v structure_ref, unique_id = dataset.short_urn.split("=", maxsplit=1) - if structure_ref in ["DataStructure", "DataFlow"]: + if structure_ref in ["DataStructure", "Dataflow"]: structure_ref = structure_ref.lower() else: structure_ref = "dataprovision" diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 0d50852c..135e012d 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -2,7 +2,7 @@ from io import BytesIO from pathlib import Path -from typing import Sequence, Union +from typing import Optional, Sequence, Union from pysdmx.errors import Invalid, NotFound from pysdmx.io.csv.sdmx10.reader import read as read_csv_v1 @@ -100,9 +100,36 @@ def read_sdmx( return Message(structures=result_structures) +def __assign_structure_to_dataset( + datasets: Sequence[Dataset], structure_msg: Message +) -> None: + for dataset in datasets: + short_urn: str = ( + dataset.structure.short_urn + if isinstance(dataset.structure, Schema) + else dataset.structure + ) + sdmx_type = parse_short_urn(short_urn).sdmx_type + if sdmx_type == "DataStructure": + try: + dsd = structure_msg.get_data_structure_definition(short_urn) + dataset.structure = dsd.to_schema() + except NotFound: + continue + else: + try: + dataflow = structure_msg.get_dataflow(short_urn) + dsd = structure_msg.get_data_structure_definition( + dataflow.structure if dataflow.structure else "" + ) + dataset.structure = dsd.to_schema() + except NotFound: + continue + + def get_datasets( data: Union[str, Path, BytesIO], - structure: Union[str, Path, BytesIO], + structure: Optional[Union[str, Path, BytesIO]] = None, validate: bool = True, ) -> Sequence[Dataset]: """Reads a data message and a structure message and returns a dataset. @@ -111,7 +138,7 @@ def get_datasets( data: Path to file (pathlib.Path), URL, or string for the data message. structure: Path to file (pathlib.Path), URL, or string - for the structure message. + for the structure message, if needed. validate: Validate the input file (only for SDMX-ML). Returns: @@ -121,38 +148,27 @@ def get_datasets( Invalid: If the data message is empty or the related data structure (or dataflow with its children) is not found. + NotFound: + If the related data structure (or dataflow with its children) + is not found. """ data_msg = read_sdmx(data, validate=validate) if not data_msg.data: raise Invalid("No data found in the data message") + if structure is None: + return data_msg.data structure_msg = read_sdmx(structure, validate=validate) if structure_msg.structures is None: raise Invalid("No structure found in the structure message") + __assign_structure_to_dataset(data_msg.data, structure_msg) + + # Check if any dataset does not have a structure for dataset in data_msg.data: - short_urn: str = ( - dataset.structure.short_urn - if isinstance(dataset.structure, Schema) - else dataset.structure - ) - sdmx_type = parse_short_urn(short_urn).sdmx_type - if sdmx_type == "DataStructure": - try: - dsd = structure_msg.get_data_structure_definition(short_urn) - dataset.structure = dsd.to_schema() - except NotFound: - continue - elif sdmx_type == "DataFlow": - try: - dataflow = structure_msg.get_dataflow(short_urn) - if dataflow.structure is None: - continue - dsd = structure_msg.get_data_structure_definition( - dataflow.structure - ) - dataset.structure = dsd.to_schema() - except NotFound: - continue + if not isinstance(dataset.structure, Schema): + raise Invalid( + f"Missing DataStructure for dataset {dataset.short_urn}" + ) - return list(data_msg.data) + return data_msg.data diff --git a/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py b/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py index 933f9696..160c06e4 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__data_aux.py @@ -82,7 +82,7 @@ def __get_elements_from_structure(structure: Dict[str, Any]) -> Any: tuple_ids = __get_ids_from_structure(structure[STRUCTURE]) elif STR_USAGE in structure: - structure_type = "DataFlow" + structure_type = "Dataflow" tuple_ids = __get_ids_from_structure(structure[STR_USAGE]) else: raise NotImplemented( diff --git a/src/pysdmx/io/xml/sdmx21/reader/structure.py b/src/pysdmx/io/xml/sdmx21/reader/structure.py index 8bee677c..24fa6556 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/structure.py +++ b/src/pysdmx/io/xml/sdmx21/reader/structure.py @@ -464,9 +464,6 @@ def __format_component( if ANNOTATIONS in comp: del comp[ANNOTATIONS] - if URN in comp: - comp[URN.lower()] = comp.pop(URN) - return Component(**comp) def __format_component_lists( @@ -637,9 +634,7 @@ def __format_schema( f"{ref_data[CLASS]}={ref_data[AGENCY_ID]}" f":{ref_data[ID]}({ref_data[VERSION]})" ) - element[STRUCTURE] = self.datastructures.get( - reference_str, reference_str - ) + element[STRUCTURE] = reference_str structure = {key.lower(): value for key, value in element.items()} if schema == DSDS: diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index d74491c4..b06abcf1 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -89,7 +89,6 @@ ItemReference, parse_item_urn, parse_short_urn, - parse_urn, ) ANNOTATION_WRITER = OrderedDict( @@ -498,14 +497,9 @@ def __write_enumeration(codes: Union[Codelist, Hierarchy], indent: str) -> str: return outfile -def __write_structure( - item: Union[DataStructureDefinition, str], indent: str -) -> str: +def __write_structure(item: str, indent: str) -> str: """Writes the dataflow structure to the XML file.""" - if isinstance(item, str): - ref = parse_short_urn(item) - else: - ref = parse_urn(item.urn) # type: ignore[arg-type] + ref = parse_short_urn(item) outfile = f"{indent}<{ABBR_STR}:Structure>" outfile += ( f"{add_indent(indent)}<{REF} " diff --git a/src/pysdmx/model/message.py b/src/pysdmx/model/message.py index 68c39387..6737a4f3 100644 --- a/src/pysdmx/model/message.py +++ b/src/pysdmx/model/message.py @@ -106,7 +106,7 @@ def __get_single_structure( """Returns a specific element from content.""" if self.structures is None: raise NotFound( - "No Structures found in message.", + f"No {type_.__name__} found in message.", "Could not find any Structures in this message.", ) for structure in self.structures: @@ -114,7 +114,7 @@ def __get_single_structure( return structure raise NotFound( - f"No {type_.__name__} with Short URN {short_urn} found in content", + f"No {type_.__name__} with Short URN {short_urn} found in message", "Could not find the requested element.", ) diff --git a/tests/io/csv/sdmx10/reader/test_reader_v1.py b/tests/io/csv/sdmx10/reader/test_reader_v1.py index a07bd202..499a9519 100644 --- a/tests/io/csv/sdmx10/reader/test_reader_v1.py +++ b/tests/io/csv/sdmx10/reader/test_reader_v1.py @@ -29,7 +29,7 @@ def test_reading_data_v1(data_path): with open(data_path, "r") as f: infile = f.read() datasets = read(infile) - assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + assert datasets[0].short_urn == "Dataflow=BIS:BIS_DER(1.0)" df = datasets[0].data assert len(df) == 1000 assert "DATAFLOW" not in df.columns @@ -37,7 +37,7 @@ def test_reading_data_v1(data_path): def test_reading_sdmx_csv_v1(data_path): datasets = read_sdmx(data_path).data - assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + assert datasets[0].short_urn == "Dataflow=BIS:BIS_DER(1.0)" df = datasets[0].data assert len(df) == 1000 assert "DATAFLOW" not in df.columns @@ -47,7 +47,7 @@ def test_reading_sdmx_csv_v1_string(data_path): with open(data_path, "r") as f: infile = f.read() datasets = read(infile) - assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + assert datasets[0].short_urn == "Dataflow=BIS:BIS_DER(1.0)" df = datasets[0].data assert len(df) == 1000 assert "DATAFLOW" not in df.columns @@ -66,7 +66,7 @@ def test_reading_no_freq_v1(data_path_no_freq): datasets = read(infile) assert ( datasets[0].short_urn - == "DataFlow=WB:GCI(1.0):GlobalCompetitivenessIndex" + == "Dataflow=WB:GCI(1.0):GlobalCompetitivenessIndex" ) df = datasets[0].data assert len(df) == 7 diff --git a/tests/io/csv/sdmx10/writer/test_writer_v1.py b/tests/io/csv/sdmx10/writer/test_writer_v1.py index 972b4e92..e5dad3ef 100644 --- a/tests/io/csv/sdmx10/writer/test_writer_v1.py +++ b/tests/io/csv/sdmx10/writer/test_writer_v1.py @@ -27,7 +27,7 @@ def data_path_reference_atch_atts(): def test_to_sdmx_csv_writing(data_path, data_path_reference): - urn = "urn:sdmx:org.sdmx.infomodel.datastructure.DataFlow=MD:DS1(1.0)" + urn = "urn:sdmx:org.sdmx.infomodel.datastructure.Dataflow=MD:DS1(1.0)" dataset = PandasDataset( attributes={}, data=pd.read_json(data_path, orient="records"), @@ -45,7 +45,7 @@ def test_to_sdmx_csv_writing(data_path, data_path_reference): def test_writer_attached_attrs(data_path, data_path_reference_atch_atts): - urn = "urn:sdmx:org.sdmx.infomodel.datastructure.DataFlow=MD:DS1(1.0)" + urn = "urn:sdmx:org.sdmx.infomodel.datastructure.Dataflow=MD:DS1(1.0)" dataset = PandasDataset( attributes={"DECIMALS": 3}, data=pd.read_json(data_path, orient="records"), diff --git a/tests/io/csv/sdmx20/reader/test_reader_v2.py b/tests/io/csv/sdmx20/reader/test_reader_v2.py index bda93833..dc395279 100644 --- a/tests/io/csv/sdmx20/reader/test_reader_v2.py +++ b/tests/io/csv/sdmx20/reader/test_reader_v2.py @@ -69,7 +69,7 @@ def test_reading_data_v2(data_path): with open(data_path, "r") as f: infile = f.read() datasets = read(infile) - assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + assert datasets[0].short_urn == "Dataflow=BIS:BIS_DER(1.0)" df = datasets[0].data assert len(df) == 1000 assert "STRUCTURE" not in df.columns @@ -79,7 +79,7 @@ def test_reading_data_v2(data_path): def test_reading_sdmx_csv_v2(data_path): datasets = read_sdmx(data_path).data - assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + assert datasets[0].short_urn == "Dataflow=BIS:BIS_DER(1.0)" df = datasets[0].data assert len(df) == 1000 assert "STRUCTURE" not in df.columns @@ -91,7 +91,7 @@ def test_reading_sdmx_csv_v2_string(data_path): with open(data_path, "r") as f: infile = f.read() datasets = read_sdmx(infile).data - assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + assert datasets[0].short_urn == "Dataflow=BIS:BIS_DER(1.0)" df = datasets[0].data assert len(df) == 1000 assert "STRUCTURE" not in df.columns @@ -112,7 +112,7 @@ def test_reading_no_freq_v2(data_path_no_freq): datasets = read(infile) assert ( datasets[0].short_urn - == "DataFlow=WB:GCI(1.0):GlobalCompetitivenessIndex" + == "Dataflow=WB:GCI(1.0):GlobalCompetitivenessIndex" ) df = datasets[0].data assert len(df) == 7 @@ -125,7 +125,7 @@ def test_reading_col_action(data_path_action): with open(data_path_action, "r") as f: infile = f.read() datasets = read(infile) - assert datasets[0].short_urn == "DataFlow=BIS:BIS_DER(1.0)" + assert datasets[0].short_urn == "Dataflow=BIS:BIS_DER(1.0)" df = datasets[0].data assert len(df) == 1000 assert "STRUCTURE" not in df.columns @@ -138,7 +138,7 @@ def test_reading_more_structures(data_path_structures): datasets = read(infile) assert len(datasets) == 3 short_urns = [ds.short_urn for ds in datasets] - assert "DataFlow=ESTAT:DF_A(1.6.0)" in short_urns + assert "Dataflow=ESTAT:DF_A(1.6.0)" in short_urns assert "DataStructure=ESTAT:DSD_B(1.7.0)" in short_urns assert "ProvisionAgreement=ESTAT:DPA_C(1.8.0)" in short_urns diff --git a/tests/io/samples/data_dataflow.xml b/tests/io/samples/data_dataflow.xml new file mode 100644 index 00000000..b4c973d1 --- /dev/null +++ b/tests/io/samples/data_dataflow.xml @@ -0,0 +1,4031 @@ + + + + test + true + 2021-03-08T17:05:06 + + + + + + + + Information + 2019-12-03T14:39:21 + 1986-01-01T00:00:00 + 2019-01-01T00:00:00 + Fusion Metadata Registry + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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a/tests/io/samples/data_wrong_datastructure.xml b/tests/io/samples/data_wrong_datastructure.xml new file mode 100644 index 00000000..d93ce860 --- /dev/null +++ b/tests/io/samples/data_wrong_datastructure.xml @@ -0,0 +1,43 @@ + + + + test + true + 2021-03-08T17:05:06 + + + + + + + + Information + 2019-12-03T14:39:21 + 1986-01-01T00:00:00 + 2019-01-01T00:00:00 + Fusion Metadata Registry + + + + + + + \ No newline at end of file diff --git a/tests/io/samples/dataflow_structure_children.xml b/tests/io/samples/dataflow_structure_children.xml new file mode 100644 index 00000000..acaaae0a --- /dev/null +++ b/tests/io/samples/dataflow_structure_children.xml @@ -0,0 +1,859 @@ + + + + ID + true + 2021-01-01T00:00:00 + + + PySDMX + + + + + OTC derivatives turnover + OTC derivatives and FX spot - turnover + + + + + + + + BIS derivatives statistics + Estadísticas de derivados del BIS + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/tests/io/samples/dataflow.xml b/tests/io/samples/dataflow_structure_no_children.xml similarity index 100% rename from tests/io/samples/dataflow.xml rename to tests/io/samples/dataflow_structure_no_children.xml diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py index 260ed0ec..7e85d259 100644 --- a/tests/io/test_general_reader.py +++ b/tests/io/test_general_reader.py @@ -53,8 +53,40 @@ def structures_path(): @pytest.fixture -def dataflow_path(): - base_path = Path(__file__).parent / "samples" / "dataflow.xml" +def dataflow_no_children(): + base_path = ( + Path(__file__).parent + / "samples" + / "dataflow_structure_no_children.xml" + ) + return str(base_path) + + +@pytest.fixture +def dataflow_children(): + base_path = ( + Path(__file__).parent / "samples" / "dataflow_structure_children.xml" + ) + return str(base_path) + + +@pytest.fixture +def data_wrong_dataflow(): + base_path = Path(__file__).parent / "samples" / "data_wrong_dataflow.xml" + return str(base_path) + + +@pytest.fixture +def data_dataflow(): + base_path = Path(__file__).parent / "samples" / "data_dataflow.xml" + return str(base_path) + + +@pytest.fixture +def data_wrong_dsd(): + base_path = ( + Path(__file__).parent / "samples" / "data_wrong_datastructure.xml" + ) return str(base_path) @@ -153,16 +185,35 @@ def test_get_datasets_no_structure_found(data_path, structures_path): get_datasets(data_path, data_path) -def test_get_datasets_no_datastructure(data_path, dataflow_path): - result = get_datasets(data_path, dataflow_path) +def test_get_datasets_csv_v1(data_csv_v1_path): + result = get_datasets(data_csv_v1_path) assert len(result) == 1 - assert result[0].data is not None - assert isinstance(result[0].structure, str) + dataset = result[0] + assert isinstance(dataset.structure, str) + assert dataset.data is not None + assert len(dataset.data) == 1000 -def test_get_datasets_dataflow_reference(data_csv_v1_path, dataflow_path): - result = get_datasets(data_csv_v1_path, dataflow_path) +def test_get_datasets_dataflow_children(data_dataflow, dataflow_children): + result = get_datasets(data_dataflow, dataflow_children) assert len(result) == 1 assert result[0].data is not None - assert isinstance(result[0].structure, str) - assert result[0].structure == "DataFlow=BIS:BIS_DER(1.0)" + assert isinstance(result[0].structure, Schema) + assert len(result[0].data) == 1000 + + +def test_get_datasets_wrong_dataflow( + data_wrong_dataflow, dataflow_no_children +): + with pytest.raises(Invalid, match="Missing DataStructure for dataset "): + get_datasets(data_wrong_dataflow, dataflow_no_children) + + +def test_get_datasets_wrong_dsd(data_wrong_dsd, dataflow_children): + with pytest.raises(Invalid, match="Missing DataStructure for dataset "): + get_datasets(data_wrong_dsd, dataflow_children) + + +def test_get_datasets_no_children(data_dataflow, dataflow_no_children): + with pytest.raises(Invalid, match="Missing DataStructure for dataset "): + get_datasets(data_dataflow, dataflow_no_children) diff --git a/tests/io/xml/sdmx21/reader/samples/dataflow_structure.xml b/tests/io/xml/sdmx21/reader/samples/dataflow_structure_no_children.xml similarity index 100% rename from tests/io/xml/sdmx21/reader/samples/dataflow_structure.xml rename to tests/io/xml/sdmx21/reader/samples/dataflow_structure_no_children.xml diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index d07d7fc8..ac073715 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -9,7 +9,9 @@ from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.xml.sdmx21.reader.error import read as read_error +from pysdmx.io.xml.sdmx21.reader.generic import read as read_generic from pysdmx.io.xml.sdmx21.reader.structure import read as read_structure +from pysdmx.io.xml.sdmx21.reader.structure_specific import read as read_str_spe from pysdmx.io.xml.sdmx21.reader.submission import read as read_sub from pysdmx.io.xml.sdmx21.writer.structure_specific import write from pysdmx.model import AgencyScheme, Codelist, ConceptScheme, Contact @@ -59,6 +61,13 @@ def error_304_path(): return Path(__file__).parent / "samples" / "error_304.xml" +@pytest.fixture +def error_str(error_304_path): + with open(error_304_path, "r") as f: + text = f.read() + return text + + def test_agency_scheme_read(agency_scheme_path): input_str, read_format = process_string_to_read(agency_scheme_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE @@ -151,6 +160,15 @@ def test_submission_result(submission_path): assert submission_2.status == "Success" +def test_submission_result_read_sdmx(submission_path): + result = read_sdmx(submission_path, validate=True).submission + assert len(result) == 2 + assert result[0].action == "Append" + assert result[0].short_urn == "DataStructure=BIS:BIS_DER(1.0)" + assert result[1].action == "Append" + assert result[1].short_urn == "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" + + def test_error_304(error_304_path): input_str, read_format = process_string_to_read(error_304_path) assert read_format == SDMXFormat.SDMX_ML_2_1_ERROR @@ -259,7 +277,7 @@ def test_partial_datastructure(samples_folder): def test_dataflow_structure(samples_folder): - data_path = samples_folder / "dataflow_structure.xml" + data_path = samples_folder / "dataflow_structure_no_children.xml" input_str, read_format = process_string_to_read(data_path) assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE result = read_sdmx(input_str, validate=True).structures @@ -270,7 +288,7 @@ def test_dataflow_structure(samples_folder): def test_dataflow_structure_read_sdmx(samples_folder): result = read_sdmx( - samples_folder / "dataflow_structure.xml", + samples_folder / "dataflow_structure_no_children.xml", validate=True, ).structures assert "Dataflow=BIS:WEBSTATS_DER_DATAFLOW(1.0)" in [ @@ -437,5 +455,25 @@ def test_estat_data(estat_data_path): assert result is not None assert len(result) == 1 dataset = result[0] - assert dataset.short_urn == "DataFlow=ESTAT:NRG_BAL_S(1.0)" + assert dataset.short_urn == "Dataflow=ESTAT:NRG_BAL_S(1.0)" assert len(dataset.data) == 33 + + +def test_wrong_flavour_structure(error_str): + with pytest.raises(Invalid): + read_structure(error_str, validate=True) + + +def test_wrong_flavour_submission(error_str): + with pytest.raises(Invalid): + read_sub(error_str, validate=True) + + +def test_wrong_flavour_generic(error_str): + with pytest.raises(Invalid): + read_generic(error_str, validate=True) + + +def test_wrong_flavour_structure_specific(error_str): + with pytest.raises(Invalid): + read_str_spe(error_str, validate=True) diff --git a/tests/model/test_message.py b/tests/model/test_message.py index 6fea905b..18bd8aec 100644 --- a/tests/model/test_message.py +++ b/tests/model/test_message.py @@ -112,7 +112,7 @@ def test_empty_get_elements(): def test_empty_get_element_by_short_urn(): - message = Message({}) + message = Message([]) with pytest.raises(NotFound) as exc_info: message.get_organisation_scheme("AgencyScheme=org1:orgs1(1.0)") @@ -129,6 +129,14 @@ def test_empty_get_element_by_short_urn(): assert "No ConceptScheme with Short URN" in str(exc_info.value.title) +def test_none_get_element_by_short_urn(): + message = Message() + with pytest.raises(NotFound) as exc_info: + message.get_organisation_scheme("AgencyScheme=org1:orgs1(1.0)") + + assert "No AgencyScheme found" in str(exc_info.value.title) + + def test_invalid_get_element_by_short_urn(): message = Message([]) From 3cbde9fc62356da0d0e7a2a22ad4cf897de97dd2 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 17:25:32 +0100 Subject: [PATCH 52/62] Replaced MessageType to SDMXFormat. Fixed tests. Signed-off-by: javier.hernandez --- src/pysdmx/io/xml/enums.py | 16 --------- .../io/xml/sdmx21/writer/__write_aux.py | 36 +++++++------------ src/pysdmx/io/xml/sdmx21/writer/error.py | 4 +-- src/pysdmx/io/xml/sdmx21/writer/generic.py | 4 +-- src/pysdmx/io/xml/sdmx21/writer/structure.py | 8 ++--- .../xml/sdmx21/writer/structure_specific.py | 6 ++-- .../io/xml/sdmx21/writer/test_data_writing.py | 28 +++++++-------- 7 files changed, 37 insertions(+), 65 deletions(-) delete mode 100644 src/pysdmx/io/xml/enums.py diff --git a/src/pysdmx/io/xml/enums.py b/src/pysdmx/io/xml/enums.py deleted file mode 100644 index 7803831d..00000000 --- a/src/pysdmx/io/xml/enums.py +++ /dev/null @@ -1,16 +0,0 @@ -"""Enumeration for the XML message types.""" - -from enum import Enum - - -class MessageType(Enum): - """MessageType enumeration. - - Enumeration that withholds the Message type for writing purposes. - """ - - GenericDataSet = 1 - StructureSpecificDataSet = 2 - Structure = 3 - Error = 4 - Submission = 5 diff --git a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py index c52a0e33..6b3d742f 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py @@ -5,19 +5,19 @@ from typing import Dict, List, Optional, Sequence, Tuple from pysdmx.errors import Invalid, NotImplemented +from pysdmx.io.enums import SDMXFormat from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.enums import MessageType from pysdmx.model import Role, Schema from pysdmx.model.dataset import Dataset from pysdmx.model.message import Header from pysdmx.util import parse_short_urn MESSAGE_TYPE_MAPPING = { - MessageType.GenericDataSet: "GenericData", - MessageType.StructureSpecificDataSet: "StructureSpecificData", - MessageType.Structure: "Structure", - MessageType.Error: "Error", - MessageType.Submission: "RegistryInterface", + SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: "GenericData", + SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: "StructureSpecificData", + SDMXFormat.SDMX_ML_2_1_STRUCTURE: "Structure", + SDMXFormat.SDMX_ML_2_1_ERROR: "Error", + SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE: "RegistryInterface", } ABBR_MSG = "mes" @@ -51,7 +51,7 @@ URN_DS_BASE = "urn:sdmx:org.sdmx.infomodel.datastructure.DataStructure=" -def __namespaces_from_type(type_: MessageType) -> str: +def __namespaces_from_type(type_: SDMXFormat) -> str: """Returns the namespaces for the XML file based on type. Args: @@ -63,18 +63,18 @@ def __namespaces_from_type(type_: MessageType) -> str: Raises: NotImplemented: If the MessageType is not implemented """ - if type_ == MessageType.Structure: + if type_ == SDMXFormat.SDMX_ML_2_1_STRUCTURE: return f"xmlns:{ABBR_STR}={NAMESPACES[ABBR_STR]!r} " - elif type_ == MessageType.StructureSpecificDataSet: + elif type_ == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: return f"xmlns:{ABBR_SPE}={NAMESPACES[ABBR_SPE]!r} " - elif type_ == MessageType.GenericDataSet: + elif type_ == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: return f"xmlns:{ABBR_GEN}={NAMESPACES[ABBR_GEN]!r} " else: raise NotImplemented(f"{type_} not implemented") def create_namespaces( - type_: MessageType, ss_namespaces: str = "", prettyprint: bool = False + type_: SDMXFormat, ss_namespaces: str = "", prettyprint: bool = False ) -> str: """Creates the namespaces for the XML file. @@ -116,17 +116,7 @@ def create_namespaces( ) -MSG_CONTENT_ITEM = { - ORGS: "AgencyScheme", - DATAFLOWS: "Dataflow", - CODELISTS: "Codelist", - CONCEPTS: "ConceptScheme", - DSDS: "DataStructure", - CONSTRAINTS: "ContentConstraint", -} - - -def get_end_message(type_: MessageType, prettyprint: bool) -> str: +def get_end_message(type_: SDMXFormat, prettyprint: bool) -> str: """Returns the end message for the XML file. Args: @@ -310,7 +300,7 @@ def check_dimension_at_observation( """This function checks if the dimension at observation is valid.""" # If dimension_at_observation is None, set it to ALL_DIM if dimension_at_observation is None: - dimension_at_observation = {k: ALL_DIM for k in content} + dimension_at_observation = dict.fromkeys(content, ALL_DIM) return dimension_at_observation # Validate the datasets for ds in content.values(): diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py index 7fb46f4c..585e55f2 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/error.py +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -2,8 +2,8 @@ from typing import Dict, Optional, Sequence +from pysdmx.io.enums import SDMXFormat from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import __namespaces_from_type from pysdmx.model.message import Header @@ -28,4 +28,4 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - __namespaces_from_type(MessageType.Error) + __namespaces_from_type(SDMXFormat.SDMX_ML_2_1_ERROR) diff --git a/src/pysdmx/io/xml/sdmx21/writer/generic.py b/src/pysdmx/io/xml/sdmx21/writer/generic.py index 72b05b69..a5139ae3 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/generic.py +++ b/src/pysdmx/io/xml/sdmx21/writer/generic.py @@ -5,8 +5,8 @@ import pandas as pd +from pysdmx.io.enums import SDMXFormat from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import ( ABBR_GEN, ABBR_MSG, @@ -385,7 +385,7 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - type_ = MessageType.GenericDataSet + type_ = SDMXFormat.SDMX_ML_2_1_DATA_GENERIC # Checking if we have datasets, # we need to ensure we can write them correctly diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index b06abcf1..6a6dc966 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -3,7 +3,7 @@ from collections import OrderedDict from typing import Any, Dict, Optional, Sequence, Union -from pysdmx.io.xml.enums import MessageType +from pysdmx.io.enums import SDMXFormat from pysdmx.io.xml.sdmx21.__tokens import ( AGENCIES, AGENCY_ID, @@ -662,9 +662,9 @@ def write( header: The header to be used (generated if None) Returns: - The XML string if path is empty, None otherwise + The XML string if output_path is empty, None otherwise """ - type_ = MessageType.Structure + type_ = SDMXFormat.SDMX_ML_2_1_STRUCTURE elements = {structure.short_urn: structure for structure in structures} if header is None: header = Header() @@ -690,5 +690,3 @@ def write( with open(output_path, "w", encoding="UTF-8", errors="replace") as f: f.write(outfile) - - return None diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py index b480e2e4..17142102 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py @@ -5,8 +5,8 @@ import pandas as pd +from pysdmx.io.enums import SDMXFormat from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.__write_aux import ( ABBR_MSG, ALL_DIM, @@ -246,7 +246,7 @@ def write( header: Optional[Header] = None, dimension_at_observation: Optional[Dict[str, str]] = None, ) -> Optional[str]: - """Write data to SDMX-ML 2.1 Generic format. + """Write data to SDMX-ML 2.1 Structure Specific format. Args: datasets: The datasets to be written. @@ -260,7 +260,7 @@ def write( The XML string if path is empty, None otherwise. """ ss_namespaces = "" - type_ = MessageType.StructureSpecificDataSet + type_ = SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC # Checking if we have datasets, # we need to ensure we can write them correctly diff --git a/tests/io/xml/sdmx21/writer/test_data_writing.py b/tests/io/xml/sdmx21/writer/test_data_writing.py index a5732de7..9415d87a 100644 --- a/tests/io/xml/sdmx21/writer/test_data_writing.py +++ b/tests/io/xml/sdmx21/writer/test_data_writing.py @@ -7,9 +7,9 @@ import pysdmx.io.xml.sdmx21.writer.config from pysdmx.errors import Invalid from pysdmx.io import read_sdmx +from pysdmx.io.enums import SDMXFormat from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.pd import PandasDataset -from pysdmx.io.xml.enums import MessageType from pysdmx.io.xml.sdmx21.writer.generic import write as write_gen from pysdmx.io.xml.sdmx21.writer.structure_specific import ( write as write_str_spec, @@ -108,15 +108,15 @@ def content(): @pytest.mark.parametrize( ("message_type", "filename", "dimension_at_observation"), [ - (MessageType.GenericDataSet, "gen_all.xml", {}), - (MessageType.StructureSpecificDataSet, "str_all.xml", None), + (SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, "gen_all.xml", {}), + (SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, "str_all.xml", None), ( - MessageType.StructureSpecificDataSet, + SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, "str_ser.xml", {"DataStructure=MD:TEST(1.0)": "DIM1"}, ), ( - MessageType.GenericDataSet, + SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, "gen_ser.xml", {"DataStructure=MD:TEST(1.0)": "DIM1"}, ), @@ -129,7 +129,7 @@ def test_data_write_read( # Write from Dataset write = ( write_str_spec - if message_type == MessageType.StructureSpecificDataSet + if message_type == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC else write_gen ) result = write( @@ -163,8 +163,8 @@ def test_data_write_read( @pytest.mark.parametrize( ("message_type", "filename", "dimension_at_observation"), [ - (MessageType.GenericDataSet, "gen_all.xml", {}), - (MessageType.StructureSpecificDataSet, "str_all.xml", None), + (SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, "gen_all.xml", {}), + (SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, "str_all.xml", None), ], ) def test_write_data_file( @@ -174,7 +174,7 @@ def test_write_data_file( # Write from Dataset write = ( write_str_spec - if message_type == MessageType.StructureSpecificDataSet + if message_type == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC else write_gen ) write( @@ -189,14 +189,14 @@ def test_write_data_file( @pytest.mark.parametrize( ("message_type", "dimension_at_observation"), [ - (MessageType.GenericDataSet, {}), - (MessageType.StructureSpecificDataSet, None), + (SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, {}), + (SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, None), ( - MessageType.StructureSpecificDataSet, + SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, {"DataStructure=MD:TEST(1.0)": "DIM1"}, ), ( - MessageType.GenericDataSet, + SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, {"DataStructure=MD:TEST(1.0)": "DIM1"}, ), ], @@ -223,7 +223,7 @@ def test_data_write_df( write = ( write_str_spec - if message_type == MessageType.StructureSpecificDataSet + if message_type == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC else write_gen ) result = write( From 81055287cc3359d4de0c223b6e5fb753bee393bf Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 17:33:23 +0100 Subject: [PATCH 53/62] Mypy fix. Signed-off-by: javier.hernandez --- src/pysdmx/io/xml/sdmx21/writer/structure.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index 6a6dc966..be8e654f 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -687,6 +687,6 @@ def write( if output_path == "": return outfile - with open(output_path, "w", encoding="UTF-8", errors="replace") as f: f.write(outfile) + return None From b16b2c6743160c6d92b9b85c4539fa11fdd7bd52 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 17:48:24 +0100 Subject: [PATCH 54/62] Docs updated Signed-off-by: javier.hernandez --- src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py | 14 +++++++------- src/pysdmx/io/xml/sdmx21/reader/doc_validation.py | 10 +++++----- src/pysdmx/io/xml/sdmx21/reader/error.py | 4 ++-- src/pysdmx/io/xml/sdmx21/reader/generic.py | 4 ++-- src/pysdmx/io/xml/sdmx21/reader/structure.py | 4 ++-- .../io/xml/sdmx21/reader/structure_specific.py | 2 +- src/pysdmx/io/xml/sdmx21/reader/submission.py | 2 +- 7 files changed, 20 insertions(+), 20 deletions(-) diff --git a/src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py b/src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py index c8237446..6ca18e71 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py +++ b/src/pysdmx/io/xml/sdmx21/reader/__parse_xml.py @@ -26,14 +26,14 @@ def parse_xml( - infile: str, + input_str: str, validate: bool = True, ) -> Dict[str, Any]: - """Reads an SDMX-ML file and returns a dictionary with the parsed data. + """Reads SDMX-ML data and returns a dictionary with the parsed data. Args: - infile: Path to file, URL, or string. - validate: If True, the XML data will be validated against the XSD. + input_str: SDMX-ML data to be parsed. + validate: If True, the SDMX-ML data will be validated against the XSD. Returns: dict: Dictionary with the parsed data. @@ -42,12 +42,12 @@ def parse_xml( Invalid: If the SDMX data cannot be parsed. """ if validate: - validate_doc(infile) + validate_doc(input_str) dict_info = xmltodict.parse( - infile, + input_str, **XML_OPTIONS, # type: ignore[arg-type] ) - del infile + del input_str return dict_info diff --git a/src/pysdmx/io/xml/sdmx21/reader/doc_validation.py b/src/pysdmx/io/xml/sdmx21/reader/doc_validation.py index fd224a45..6ed50045 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/doc_validation.py +++ b/src/pysdmx/io/xml/sdmx21/reader/doc_validation.py @@ -9,20 +9,20 @@ from pysdmx.io.xml.__allowed_lxml_errors import ALLOWED_ERRORS_CONTENT -def validate_doc(infile: str) -> None: - """Validates the XML file against the XSD schema for SDMX-ML 2.1. +def validate_doc(input_str: str) -> None: + """Validates the SDMX-ML data against the XSD schema for SDMX-ML 2.1. Args: - infile (str): The path to the XML file to validate. + input_str: The SDMX-ML data to validate. Raises: - Invalid: If the XML file does not validate against the schema. + Invalid: If the SDMX-ML data does not validate against the schema. """ parser = etree.ETCompatXMLParser() xmlschema_doc = etree.parse(SCHEMA_PATH) xmlschema = etree.XMLSchema(xmlschema_doc) - bytes_infile = BytesIO(bytes(infile, "UTF_8")) + bytes_infile = BytesIO(bytes(input_str, "UTF_8")) doc = etree.parse(bytes_infile, parser=parser) if not xmlschema.validate(doc): diff --git a/src/pysdmx/io/xml/sdmx21/reader/error.py b/src/pysdmx/io/xml/sdmx21/reader/error.py index 1fdd57ee..1d3cacc7 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/error.py +++ b/src/pysdmx/io/xml/sdmx21/reader/error.py @@ -11,10 +11,10 @@ def read(input_str: str, validate: bool = True) -> None: - """Reads an Error message from the SDMX-ML file and raises the exception. + """Reads an Error message from the SDMX-ML data and raises the exception. Args: - input_str: The SDMX-ML file as a string. + input_str: The SDMX-ML data as a string. validate: If True, the input is validated before Raises: diff --git a/src/pysdmx/io/xml/sdmx21/reader/generic.py b/src/pysdmx/io/xml/sdmx21/reader/generic.py index 0de79ddc..3f86ff6d 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/generic.py +++ b/src/pysdmx/io/xml/sdmx21/reader/generic.py @@ -127,10 +127,10 @@ def __parse_generic_data( def read(input_str: str, validate: bool = True) -> Sequence[PandasDataset]: - """Reads an SDMX-ML 2.1 Generic file and returns a Sequence of Datasets. + """Reads an SDMX-ML 2.1 Generic data and returns a Sequence of Datasets. Args: - input_str: string to read XML data from. + input_str: SDMX-ML data to read. validate: If True, the XML data will be validated against the XSD. """ dict_info = parse_xml(input_str, validate=validate) diff --git a/src/pysdmx/io/xml/sdmx21/reader/structure.py b/src/pysdmx/io/xml/sdmx21/reader/structure.py index 24fa6556..31479b0b 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/structure.py +++ b/src/pysdmx/io/xml/sdmx21/reader/structure.py @@ -694,10 +694,10 @@ def read( input_str: str, validate: bool = True, ) -> Sequence[Union[ItemScheme, DataStructureDefinition, Dataflow]]: - """Reads an SDMX-ML 2.1 Structure file and returns the structures. + """Reads an SDMX-ML 2.1 Structure data and returns the structures. Args: - input_str: string to read XML data from. + input_str: SDMX-ML data to read. validate: If True, the XML data will be validated against the XSD. Returns: diff --git a/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py b/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py index 440c4478..ec6d4725 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/reader/structure_specific.py @@ -100,7 +100,7 @@ def read(input_str: str, validate: bool = True) -> Sequence[PandasDataset]: """Reads an SDMX-ML 2.1 Generic file and returns a Sequence of Datasets. Args: - input_str: string to read XML data from. + input_str: SDMX-ML data to read. validate: If True, the XML data will be validated against the XSD. """ dict_info = parse_xml(input_str, validate=validate) diff --git a/src/pysdmx/io/xml/sdmx21/reader/submission.py b/src/pysdmx/io/xml/sdmx21/reader/submission.py index 7e03d75c..6dfefd69 100644 --- a/src/pysdmx/io/xml/sdmx21/reader/submission.py +++ b/src/pysdmx/io/xml/sdmx21/reader/submission.py @@ -48,7 +48,7 @@ def read(input_str: str, validate: bool = True) -> Sequence[SubmissionResult]: """Reads an SDMX-ML 2.1 Submission Result file. Args: - input_str: string to read XML data from. + input_str: SDMX-ML data to read. validate: If True, the XML data will be validated against the XSD. """ dict_info = parse_xml(input_str, validate=validate) From fd1c3f31dddd955bbb7675354a7e1d4835bb08f6 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Mon, 13 Jan 2025 17:49:44 +0100 Subject: [PATCH 55/62] Updated signature on input processor Signed-off-by: javier.hernandez --- src/pysdmx/io/input_processor.py | 50 ++++++++++++++++---------------- 1 file changed, 25 insertions(+), 25 deletions(-) diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 124b6266..ba57c442 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -19,16 +19,16 @@ def __remove_bom(input_string: str) -> str: return input_string.replace("\ufeff", "") -def __check_xml(infile: str) -> bool: - return infile[:5] == " bool: + return input_str[:5] == " bool: +def __check_csv(input_str: str) -> bool: try: - pd.read_csv(StringIO(infile), nrows=2) + pd.read_csv(StringIO(input_str), nrows=2) if ( - len(infile.splitlines()) > 1 - or infile.splitlines()[0].count(",") > 1 + len(input_str.splitlines()) > 1 + or input_str.splitlines()[0].count(",") > 1 ): return True except Exception: @@ -36,45 +36,45 @@ def __check_csv(infile: str) -> bool: return False -def __check_json(infile: str) -> bool: +def __check_json(input_str: str) -> bool: try: - loads(infile) + loads(input_str) return True except JSONDecodeError: return False -def __get_sdmx_ml_flavour(infile: str) -> Tuple[str, SDMXFormat]: - flavour_check = infile[:1000].lower() +def __get_sdmx_ml_flavour(input_str: str) -> Tuple[str, SDMXFormat]: + flavour_check = input_str[:1000].lower() if ":generic" in flavour_check: - return infile, SDMXFormat.SDMX_ML_2_1_DATA_GENERIC + return input_str, SDMXFormat.SDMX_ML_2_1_DATA_GENERIC if ":structurespecificdata" in flavour_check: - return infile, SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC + return input_str, SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC if ":structure" in flavour_check: - return infile, SDMXFormat.SDMX_ML_2_1_STRUCTURE + return input_str, SDMXFormat.SDMX_ML_2_1_STRUCTURE if ":registryinterface" in flavour_check: - return infile, SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE + return input_str, SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE if ":error" in flavour_check: - return infile, SDMXFormat.SDMX_ML_2_1_ERROR + return input_str, SDMXFormat.SDMX_ML_2_1_ERROR raise Invalid("Validation Error", "Cannot parse input as SDMX-ML.") -def __get_sdmx_csv_flavour(infile: str) -> Tuple[str, SDMXFormat]: - headers = csv.reader(StringIO(infile)).__next__() +def __get_sdmx_csv_flavour(input_str: str) -> Tuple[str, SDMXFormat]: + headers = csv.reader(StringIO(input_str)).__next__() if "DATAFLOW" in headers: - return infile, SDMXFormat.SDMX_CSV_1_0 + return input_str, SDMXFormat.SDMX_CSV_1_0 elif "STRUCTURE" in headers and "STRUCTURE_ID" in headers: - return infile, SDMXFormat.SDMX_CSV_2_0 + return input_str, SDMXFormat.SDMX_CSV_2_0 raise Invalid("Validation Error", "Cannot parse input as SDMX-CSV.") -def __check_sdmx_str(infile: str) -> Tuple[str, SDMXFormat]: +def __check_sdmx_str(input_str: str) -> Tuple[str, SDMXFormat]: """Attempts to infer the SDMX format of the input string.""" - if __check_xml(infile): - return __get_sdmx_ml_flavour(infile) - if __check_csv(infile): - return __get_sdmx_csv_flavour(infile) - if __check_json(infile): + if __check_xml(input_str): + return __get_sdmx_ml_flavour(input_str) + if __check_csv(input_str): + return __get_sdmx_csv_flavour(input_str) + if __check_json(input_str): raise NotImplemented("JSON formats reading are not supported yet") raise Invalid("Validation Error", "Cannot parse input as SDMX.") From d14d5db258fbcbc5e68cfc72ca47481deeb5dc1f Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 16 Jan 2025 10:57:45 +0100 Subject: [PATCH 56/62] Fixed typo on write function in csv. Signed-off-by: javier.hernandez --- src/pysdmx/io/csv/sdmx10/writer/__init__.py | 2 +- src/pysdmx/io/csv/sdmx20/writer/__init__.py | 2 +- tests/io/csv/sdmx10/writer/test_writer_v1.py | 6 +++--- tests/io/csv/sdmx20/writer/test_writer_v2.py | 8 ++++---- 4 files changed, 9 insertions(+), 9 deletions(-) diff --git a/src/pysdmx/io/csv/sdmx10/writer/__init__.py b/src/pysdmx/io/csv/sdmx10/writer/__init__.py index e8ee2211..8560bb0e 100644 --- a/src/pysdmx/io/csv/sdmx10/writer/__init__.py +++ b/src/pysdmx/io/csv/sdmx10/writer/__init__.py @@ -8,7 +8,7 @@ from pysdmx.io.pd import PandasDataset -def writer( +def write( datasets: Sequence[PandasDataset], output_path: Optional[str] = None ) -> Optional[str]: """Write data to SDMX-CSV 1.0 format. diff --git a/src/pysdmx/io/csv/sdmx20/writer/__init__.py b/src/pysdmx/io/csv/sdmx20/writer/__init__.py index 096de37c..7394e8b9 100644 --- a/src/pysdmx/io/csv/sdmx20/writer/__init__.py +++ b/src/pysdmx/io/csv/sdmx20/writer/__init__.py @@ -9,7 +9,7 @@ from pysdmx.io.pd import PandasDataset -def writer( +def write( datasets: Sequence[PandasDataset], output_path: Optional[str] = None ) -> Optional[str]: """Write data to SDMX-CSV 2.0 format. diff --git a/tests/io/csv/sdmx10/writer/test_writer_v1.py b/tests/io/csv/sdmx10/writer/test_writer_v1.py index e5dad3ef..99195cd1 100644 --- a/tests/io/csv/sdmx10/writer/test_writer_v1.py +++ b/tests/io/csv/sdmx10/writer/test_writer_v1.py @@ -4,7 +4,7 @@ import pandas as pd import pytest -from pysdmx.io.csv.sdmx10.writer import writer +from pysdmx.io.csv.sdmx10.writer import write from pysdmx.io.pd import PandasDataset @@ -34,7 +34,7 @@ def test_to_sdmx_csv_writing(data_path, data_path_reference): structure=urn, ) dataset.data = dataset.data.astype("str") - result_sdmx_csv = writer([dataset]) + result_sdmx_csv = write([dataset]) result_df = pd.read_csv(StringIO(result_sdmx_csv)).astype(str) reference_df = pd.read_csv(data_path_reference).astype(str) pd.testing.assert_frame_equal( @@ -52,7 +52,7 @@ def test_writer_attached_attrs(data_path, data_path_reference_atch_atts): structure=urn, ) dataset.data = dataset.data.astype("str") - result_sdmx_csv = writer([dataset]) + result_sdmx_csv = write([dataset]) result_df = pd.read_csv(StringIO(result_sdmx_csv)).astype(str) reference_df = pd.read_csv(data_path_reference_atch_atts).astype(str) pd.testing.assert_frame_equal( diff --git a/tests/io/csv/sdmx20/writer/test_writer_v2.py b/tests/io/csv/sdmx20/writer/test_writer_v2.py index e740f3c3..86b5d669 100644 --- a/tests/io/csv/sdmx20/writer/test_writer_v2.py +++ b/tests/io/csv/sdmx20/writer/test_writer_v2.py @@ -4,7 +4,7 @@ import pandas as pd import pytest -from pysdmx.io.csv.sdmx20.writer import writer +from pysdmx.io.csv.sdmx20.writer import write from pysdmx.io.pd import PandasDataset from pysdmx.model.dataset import ActionType @@ -44,7 +44,7 @@ def test_to_sdmx_csv_writing(data_path, data_path_reference): structure=urn, ) dataset.data = dataset.data.astype("str") - result_sdmx = writer([dataset]) + result_sdmx = write([dataset]) result_df = pd.read_csv(StringIO(result_sdmx)).astype(str) reference_df = pd.read_csv(data_path_reference).astype(str) pd.testing.assert_frame_equal( @@ -61,7 +61,7 @@ def test_writer_attached_attrs(data_path, data_path_reference_attch_atts): structure="DataStructure=MD:DS1(2.0)", ) dataset.data = dataset.data.astype(str) - result_sdmx = writer([dataset]) + result_sdmx = write([dataset]) result_df = pd.read_csv(StringIO(result_sdmx)).astype(str) reference_df = pd.read_csv(data_path_reference_attch_atts).astype(str) pd.testing.assert_frame_equal( @@ -79,7 +79,7 @@ def test_writer_with_action(data_path, data_path_reference_action): action=ActionType.Replace, ) dataset.data = dataset.data.astype(str) - result_sdmx = writer([dataset]) + result_sdmx = write([dataset]) result_df = pd.read_csv(StringIO(result_sdmx)).astype(str) reference_df = pd.read_csv(data_path_reference_action).astype(str) pd.testing.assert_frame_equal( From f8e28157cd1a618bb0118394969e35c60d426182 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Thu, 16 Jan 2025 13:12:03 +0100 Subject: [PATCH 57/62] Separated enumeration of SDMX JSON into Data and Structures Signed-off-by: javier.hernandez --- src/pysdmx/io/enums.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/pysdmx/io/enums.py b/src/pysdmx/io/enums.py index cb93d62c..e304fa67 100644 --- a/src/pysdmx/io/enums.py +++ b/src/pysdmx/io/enums.py @@ -11,7 +11,8 @@ class SDMXFormat(Enum): SDMX_ML_2_1_DATA_GENERIC = "SDMX-ML 2.1 Generic" SDMX_ML_2_1_REGISTRY_INTERFACE = "SDMX-ML 2.1 Registry Interface" SDMX_ML_2_1_ERROR = "SDMX-ML 2.1 Error" - SDMX_JSON_2 = "SDMX-JSON 2.0.0" + SDMX_JSON_2_DATA = "SDMX-JSON 2.0.0" + SDMX_JSON_2_STRUCTURES = "SDMX-JSON 2.0.0" FUSION_JSON = "FusionJSON" SDMX_CSV_1_0 = "SDMX-CSV 1.0" SDMX_CSV_2_0 = "SDMX-CSV 2.0" From 539b5d75a4de650fecdd30180be4960000891010 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Fri, 17 Jan 2025 11:24:28 +0100 Subject: [PATCH 58/62] Added method to extract artefacts from a DataStructureDefinition. Added test to schema with artefacts. Added string representation to ItemReference Signed-off-by: javier.hernandez --- src/pysdmx/model/dataflow.py | 16 + src/pysdmx/util/__init__.py | 7 + .../io/samples/datastructure_descendants.xml | 5469 +++++++++++++++++ tests/io/test_general_reader.py | 29 + 4 files changed, 5521 insertions(+) create mode 100644 tests/io/samples/datastructure_descendants.xml diff --git a/src/pysdmx/model/dataflow.py b/src/pysdmx/model/dataflow.py index 25d8d996..0289ed16 100644 --- a/src/pysdmx/model/dataflow.py +++ b/src/pysdmx/model/dataflow.py @@ -440,6 +440,21 @@ class DataStructureDefinition(MaintainableArtefact, frozen=True, kw_only=True): components: Components + def __extract_artefacts(self) -> Sequence[str]: + """Extract the artefacts used to generate the schema.""" + out = [] + for c in self.components: + if c.local_codes: + out.append(c.local_codes.urn) + # Concept URNs + if isinstance(c.concept, Concept): + out.append(c.concept.urn) + else: + urn_header = "urn:sdmx:org.sdmx.infomodel.conceptscheme." + out.append(urn_header + str(c.concept)) + result = list({a for a in out if a}) + return result + def to_schema(self) -> Schema: """Generates a Schema class from the DataStructureDefinition.""" return Schema( @@ -450,6 +465,7 @@ def to_schema(self) -> Schema: id=self.id, components=self.components, version=self.version, + artefacts=self.__extract_artefacts(), ) @property diff --git a/src/pysdmx/util/__init__.py b/src/pysdmx/util/__init__.py index 5c5127d4..33c5ae1a 100644 --- a/src/pysdmx/util/__init__.py +++ b/src/pysdmx/util/__init__.py @@ -49,6 +49,13 @@ class ItemReference(Struct, frozen=True, tag=True): version: str item_id: str + def __str__(self) -> str: + """Returns a string representation of the object.""" + return ( + f"{self.sdmx_type}={self.agency}:{self.id}" + f"({self.version}).{self.item_id}" + ) + maintainable_urn_pattern = re.compile(r"^.*\.(.*)=(.*):(.*)\((.*)\)$") item_urn_pattern = re.compile(r"^.*\.(.*)=(.*):(.*)\((.*)\)\.(.*)$") diff --git a/tests/io/samples/datastructure_descendants.xml b/tests/io/samples/datastructure_descendants.xml new file mode 100644 index 00000000..3b1849d5 --- /dev/null +++ b/tests/io/samples/datastructure_descendants.xml @@ -0,0 +1,5469 @@ + + + + test + true + 2021-04-20T10:29:14 + + + + + + + RBI Maintenance Agencies + + SDMX + + + RBI_CIMS + RBI_CIMS for testing + + + RBI + RBI + + + TEST_DEV_TEAM + + + European Central Bank + + + Bank for International Settlements + + + International Monetary Fund + + + Eurostat + + + Eurostat + + + Organisation for Economic Co-operation and Development + + + Bundesbank + + + Organisation for Economic Co-operation and Development (PULL) + + + International Monetary Fund (PULL) + + + ISO + + + WorldBank + + + BIS and IMF (joint exercise) + + + World bank (by BIS) + World bank (maintained by BIS) + + + Bank of Japan + Bank of Japan (created by BIS) + + + Task Force on Finance Statistics + Task Force on Finance Statistics + + + United nations + United nations (by BIS) + + + UNESCO Institute for Statistics (UIS) + The UNESCO Institute for Statistics (UIS) is the statistical office of the United Nations Educational, Scientific and Cultural Organization (UNESCO). The Institute produces the data and methodologies to monitor trends at national and international levels. It delivers comparative data for countries at all stages of development to provide a global perspective on education, science and technology, culture, and communication. The UIS is the official source for the indicators needed to achieve SDG 4–Education 2030 and key targets in science and innovation, culture and communication. + + UNESCO Institute for Statistics (UIS) + UNESCO Institute for Statistics (UIS) + Single entry point for external inquiries + http://uis.unesco.org + uis.datarequests@unesco.org + + + + Metadata Technology + Provider of consultancy, software, and services to the SDMX community. + + Chris Nelson + Standards + Standards Consultant + +44 1483 418058 + http://www.metadatatechnology.com + http://www.sdmxfusion.com + http://registry.sdmxcloud.org + http://data.sdmxcloud.org + chris.nelson@metadatatechnology.com + + + Matthew Nelson + IT + Software Architect + +44 1483 418058 + http://sdmxsource.org + matt.nelson@metadatatechnology.com + + + + International Labour Organization + The ILO was founded in 1919, in the wake of a destructive war, to pursue a vision based on the premise that universal, lasting peace can be established only if it is based on social justice. The ILO became the first specialized agency of the UN in 1946. The main aims of the ILO are to promote rights at work, encourage decent employment opportunities, enhance social protection and strengthen dialogue on work-related issues. + + + The Brazilian Institute of Geography and Statistics + Instituto Brasileiro de Geografia e Estatística + + + Nigerian National Bureau of Statistics (NBS) + The National Bureau of Statistics Nigeria as the mandate to generate, on a continuous and sustainable basis, socio-economic statistics on all facets of development in Nigeria. + + Lucky OGIDAN + Information and Communication Technology Department + Web Application Manager + http://www.nigerianstat.gov.ng + feedback@nigerianstat.gov.ng + laogidan@nigerianstat.gov.ng + + + + National Statistical Institute of Guinea-Bissau - Instituto Nacional de Estatística da Guiné-Bissau (INE) + + + Bhutan National Statistics Bureau (NSB) + + + United Nations Organization for Education, Science and Culture (UNESCO) + UNESCO strives to build networks among nations that enable humanity's moral and intellectual solidarity, by: • Mobilizing for education: so that every child, boy or girl, has access to quality education as a fundamental human right and as a prerequisite for human development. • Building intercultural understanding: through protection of heritage and support for cultural diversity. UNESCO created the idea of World Heritage to protect sites of outstanding universal value. • Pursuing scientific cooperation: such as early warning systems for tsunamis or trans-boundary water management agreements, to strengthen ties between nations and societies. • Protecting freedom of expression: an essential condition for democracy, development and human dignity. Source: http://en.unesco.org/about-us/introducing-unesco The UNESCO Institute for Statistics (UIS) is the statistical branch of the United Nations Educational, Scientific and Cultural Organisation (UNESCO). The Institute produces the data and methodologies to monitor trends at national and international levels. It delivers comparative data for countries at all stages of development to provide a global perspective on education, science and technology, culture, and communication. 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Trustee positions + + + Czechoslovakia + + + Canada + + + Congo Democratic Republic + + + Central African Republic + + + Congo + + + Switzerland + + + Cote d'Ivoire + + + Chile + + + Cameroon + + + China + + + Colombia + + + Costa Rica + + + Serbia and Montenegro + + + Cuba + + + Cape Verde + + + Curacao + + + Cyprus + + + Czech Republic + + + German Democratic Republic + + + Germany + + + Djibouti + + + Denmark + + + Dominica + + + Dominican Republic + + + Algeria + + + Ecuador + + + Estonia + + + Egypt + + + Eritrea + + + Spain + + + Ethiopia + + + Finland + + + Fiji + + + Falkland Islands + + + Micronesia + + + Faeroe Islands + + + France + + + United Kingdom incl. Channel Islands + + + Gabon + + + United Kingdom + + + Grenada + + + Georgia + + + Guernsey + + + Ghana + + + Gibraltar + + + Greenland + + + Gambia + + + Guinea + + + Equatorial Guinea + + + Greece + + + Guatemala + + + Guinea-Bissau + + + Guyana + + + Hong Kong SAR + + + Honduras + + + Croatia + + + Haiti + + + Hungary + + + Indonesia + + + Ireland + + + Israel + + + Isle of Man + + + India + + + Iraq + + + Iran + + + Iceland + + + Italy + + + Jersey + + + Jamaica + + + Jordan + + + Japan + + + Kenya + + + Kyrgyz Republic + + + Cambodia + + + Kiribati + + + Comoros + + + St.Kitts - Nevis + + + North Korea + + + South Korea + + + Kuwait + + + Cayman Islands + + + Kazakhstan + + + Laos + + + Lebanon + + + St. Lucia + + + Liechtenstein + + + Sri Lanka + + + Liberia + + + Lesotho + + + Lithuania + + + Luxembourg + + + Latvia + + + Libya + + + Morocco + + + Monaco + + + Moldova + + + Montenegro + + + Saint Martin (French part) + + + Madagascar + + + Marshall Islands + + + North Macedonia + + + Mali + + + Myanmar + + + Mongolia + + + Macao SAR + + + Northern Marianas islands + + + Mauritania + + + Malta + + + Mauritius + + + Maldives + + + Malawi + + + Mexico + + + Malaysia + + + Mozambique + + + Namibia + + + New Caledonia + + + Niger + + + Nigeria + + + Nicaragua + + + Netherlands + + + Norway + + + Nepal + + + Nauru + + + New Zealand + + + Oman + + + Panama + + + Peru + + + French Polynesia + + + Papua New Guinea + + + Philippines + + + Pakistan + + + Poland + + + Palestinian Territory + + + Portugal + + + US Pacific Islands + + + Palau + + + Paraguay + + + Qatar + + + Romania + + + Serbia + + + Russia + + + Rwanda + + + Saudi Arabia + + + Solomon Islands + + + Seychelles + + + Sudan + + + Sweden + + + Singapore + + + St. Helena and Dependencies + + + Slovenia + + + Slovakia + + + Sierra Leone + + + San Marino + + + Senegal + + + Somalia + + + Suriname + + + South Sudan + + + Sao Tome and Principe + + + Soviet Union + + + El Salvador + + + Sint Maarten + + + Syria + + + Eswatini + + + Turks and Caicos Islands + + + Chad + + + Togo + + + Thailand + + + Tajikistan + + + Timor Leste + + + Turkmenistan + + + Tunisia + + + Tonga + + + Turkey + + + Trinidad and Tobago + + + Tuvalu + + + Chinese Taipei + + + Tanzania + + + Ukraine + + + Uganda + + + United States + + + Uruguay + + + Uzbekistan + + + Vatican City State + + + St. Vincent and the Grenadines + + + Venezuela + + + Vietnam + + + Vanuatu + + + Wallis and Futuna + + + Samoa + + + Yemen + + + Yugoslavia + + + Legacy countries + + + South Africa + + + Zambia + + + Zimbabwe + + + Euro area + + + Anguillla + + + Montserrat + + + Waemu + + + World + + + + BIS_Unit + + Barrels + + + Canadian Dollar / Constant 1992 Canadian Dollar + + + Canadian Dollar / Constant 1997 Canadian Dollar + + + Chained 1992 US Dollar + + + Chained 1995 Euro + + + Chained 1995 Luxembourg Franc + + + Chained 1995 Swedish Krona + + + Chained 1995/1996 New Zealand Dollar + + + Chained 1996 US Dollar + + + Chained 1997 Canadian Dollar + + + Chained 1999 Norwegian Krone + + + Chained 2000 / 2001 Australian Dollar + + + Constant 1970 Belgian Franc + + + Constant 1970 French Franc + + + Constant 1970 Greek Drachma + + + Constant 1970 Italian Lira + + + Constant 1970 Japanese Yen + + + Constant 1970 Saudi Riyal + + + Constant 1972 US Dollar + + + Constant 1975 Swedish Krona + + + Constant 1977 Portuguese Escudo + + + Constant 1980 Belgian Franc + + + Constant 1980 Danish Krone + + + Constant 1980 Deutsche Mark + + + Constant 1980 Dutch Guilder + + + Constant 1980 Frenc Franc + + + Constant 1980 Swedish Krona + + + Constant 1980 Swiss Franc + + + Constant 1982 US Dollar + + + Constant 1983 Austrian Shilling + + + Constant 1985 Deutsche Mark + + + Constant 1985 Finnish Markka + + + Constant 1985 Irish Punt + + + Constant 1985 Italian Lira + + + Constant 1986 Canadian Dollar + + + Constant 1986 Spanish Peseta + + + Constant 1987 Malaysian Ringgit + + + Constant 1987 US Dollar + + + Constant 1988 Greek Drachma + + + Constant 1988 Thai Bath + + + Constant 1990 Belgian Franc + + + Constant 1990 Dutch Guilder + + + Constant 1990 Finnish Markka + + + Constant 1990 Irish Punt + + + Constant 1990 Italian Lira + + + Constant 1990 Jananese Yen + + + Constant 1990 Pound Sterling + + + Constant 1990 Swedish Krona + + + Constant 1990 Swiss Franc + + + Constant 1991 Deutsche Mark + + + Constant 1991 Norwegian Krone + + + Constant 1991 Spanish Peseta + + + Constant 1991 Swedish Krona + + + Constant 1991 / 1992 New Zealand Dollar + + + Constant 1992 Canadian Dollar + + + Constant 1993 Indonesia Rupiah + + + Constant 1995 Austrian Shilling + + + Constant 1995 Belgian Franc + + + Constant 1995 Czech Koruna + + + Constant 1995 Danish Krone + + + Constant 1995 Deutsche Mark + + + Constant 1995 Dutch Guilder + + + Constant 1995 Euro + + + Constant 1995 European Currency Unit + + + Constant 1995 Finnish Markka + + + Constant 1995 French Franc + + + Constant 1995 Greek Drachma + + + Constant 1995 Irish Punt + + + Constant 1995 Italian Lira + + + Constant 1995 Japanese Yen + + + Constant 1995 Luxembourg Franc + + + Constant 1995 Pound Sterling + + + Constant 1995 South African Rand + + + Constant 1995 Spanish Peseta + + + Constant 1996 US Dollar + + + Constant 1997 Canadian Dollar + + + Constant 1998 Hungarian Forint + + + Constant 2000 Hong Kong Dollar + + + Constant 1997 Q4 New Zealand Dollar + + + Previous Year Euro + + + Previous Year Portuguese Escudo + + + Cubic Feet + + + Cubic Meter + + + Days + + + Deutsche Mark / Constant 1995 Deutsche Mark + + + Dutch Guilder / Kilo + + + Euro / Constant 1995 Euro + + + Fine Ounces + + + French Franc / Constant 1980 French Franc + + + French Franc / Constant 1995 French Franc + + + Full-Time Equivalence Jobs + + + Hours + + + Index, 1914 = 1 + + + Index, 1931 Dec 31 = 100 + + + Index, 1931 Sep 18 = 100 + + + Index, 1937 = 100 + + + Index, 1939 = 100 + + + Index, 1941 / 43 = 10 + + + Index, 1948 Jan = 100 + + + Index, 1953 = 100 + + + Index, 1953 Oct = 100 + + + Index, 1956 Jan 01 = 100 + + + Index, 1958 = 100 + + + Index, 1958 Dec 31 = 100 + + + Index, 1961 = 100 + + + Index, 1962 = 100 + + + Index, 1962 Apr 10 = 100 + + + Index, 1963 = 100 + + + Index, 1964 = 100 + + + Index, 1964 Jul 31 = 100 + + + Index, 1964 Nov = 100 + + + Index, 1965 Dec 31 = 50 + + + Index, 1966 = 100 + + + Index, 1966 Jan = 100 + + + Index, 1967 = 100 + + + Index, 1967 Dec 31 = 100 + + + Index, 1968 = 100 + + + Index, 1968 Jan 04 = 100 + + + Index, 1970 = 100 + + + Index, 1970 May = 100 + + + Index, 1971 = 100 + + + Index, 1971 Feb 05 = 100 + + + Index, 1972 = 100 + + + Index, 1972 Dec 29 = 100 + + + Index, 1973 = 100 + + + Index, 1973 Jan = 100 + + + Index, 1973 Mar = 100 + + + Index, 1974 = 100 + + + Index, 1974 Jan = 100 + + + Index, 1974 Jul to 1981 Jun = 100 + + + Index, 1975 = 100 + + + Index, 1975 = 1000 + + + Index, 1975 Jan = 1000 + + + Index, 1976 = 100 + + + Index, 1976 Q1 = 100 + + + Index, 1977 = 100 + + + Index, 1977 Nov = 100 + + + Index, 1977 Sep = 100 + + + Index, 1978 = 100 + + + Index, 1978 Q1 = 1000 + + + Index, 1979 = 100 + + + Index, 1979 Dec 28 = 100 + + + Index, 1979 Dec 31 = 100 + + + Index, 1979 Dec 31 = 500 + + + Index, 1979 Jun = 100 + + + Index, 1980 = 100 + + + Index, 1980 Dec 30 = 100 + + + Index, 1980 Dec 31 = 100 + + + Index, 1980 Jan 01 = 100 + + + Index, 1980 Jan 01 = 1000 + + + Index, 1980 Q1 = 100 + + + Index, 1981 = 100 + + + Index, 1981 Dec 31 = 100 + + + Index, 1982 = 100 + + + Index, 1982 Dec = 100 + + + Index, 1982 Oct 08 = 100 + + + Index, 1982 Q4 = 1000 + + + Index, 1982/1984 = 100 + + + Index, 1982/1990 = 100 + + + Index, 1983 = 100 + + + Index, 1983 Dec 31 = 100 + + + Index, 1983 Jan = 1000 + + + Index, 1983 Jan 01 = 100 + + + Index, 1983 Nov = 100 + + + Index, 1984 Jan 01 = 1000 + + + Index, 1985 = 100 + + + Index, 1985 Dec = 100 + + + Index, 1985 Jan 02 = 1000 + + + Index, 1985 Q4 = 1000 + + + Index, 1985 Sep = 100 + + + Index, 1986 = 100 + + + Index, 1987 = 100 + + + Index, 1987 Dec = 100 + + + Index, 1987 Dec 30 = 100 + + + Index, 1987 Dec 30 = 1000 + + + Index, 1987 Dec 31 = 1000 + + + Index, 1987 Jan = 100 + + + Index, 1987 Jan 13 = 100 + + + Index, 1987 Jun 01 = 1000 + + + Index, 1988 = 100 + + + Index, 1988 Jan = 100 + + + Index, 1988 Jan 04 = 1000 + + + Index, 1988 Jan 05 = 1000 + + + Index, 1988 Oct 01 = 100 + + + Index, 1988/1989 = 1000 + + + Index, 1989 = 100 + + + Index, 1989 Dec = 3000 + + + Index, 1989 Jul 03 = 100 + + + Index, 1989 Nov = 100 + + + Index, 1989 Nov 15 = 100 + + + Index, 1989 Q2 = 100 + + + Index, 1989 Q4 = 1000 + + + Index, 1989/1990 = 100 + + + Index, 1990 = 100 + + + Index, 1990 Dec 28 = 1000 + + + Index, 1990 H2 = 100 + + + Index, 1990 Q3 = 100 + + + Index, 1990/1991 = 100 + + + Index, 1991 = 100 + + + Index, 1991 Dec = 100 + + + Index, 1991 Dec 31 = 100 + + + Index, 1991 Dec 31 = 1000 + + + Index, 1991 Jan 01 = 1000 + + + Index, 1991 Jan 02 = 1000 + + + Index, 1991 Oct 28 = 100 + + + Index, 1992 = 100 + + + Index, 1992 Jan = 100 + + + Index, 1992 Jan 06 = 1000 + + + Index, 1992 Q4 = 1000 + + + Index, 1993 = 100 + + + Index, 1993 May = 100 + + + Index, 1993 Q1 = 100 + + + Index, 1993 Q4 = 1000 + + + Index, 1994 = 100 + + + Index, 1994 Feb = 100 + + + Index, 1994 Q2 = 100 + + + Index, 1994 Q4 = 100 + + + Index, 1994 Sep 30 = 1000 + + + Index, 1995 = 100 + + + Index, 1995 Dec = 100 + + + Index, 1995 Dec 28 = 100 + + + Index, 1995 Dec 29 = 100 + + + Index, 1995 Jan 02 = 100 + + + Index, 1995 Q1 = 100 + + + Index, 1995 Q3 = 100 + + + Index, 1996 = 100 + + + Index, 1996 Nov 15 = 100 + + + Index, 1997 = 100 + + + Index, 1997 Dec 31 = 1000 + + + Index, 1997 Jan = 100 + + + Index, 1997 Q1 = 100 + + + Index, 1997 Q4 = 1000 + + + Index, 1997 Sep = 100 + + + Index, 1998 = 100 + + + Index, 1998 Dec 31 = 100 + + + Index, 1998 Q4 = 100 + + + Index, 1998/1999 = 100 + + + Index, 1999 = 100 + + + Index, 1999 Dec = 100 + + + Index, 1999 Dec 30 = 1000 + + + Index, 1999 Jan = 100 + + + Index, 1999 Jan 04 = 100 + + + Index, 1999 Jan 04 = 1000 + + + Index, 1999 Q1 = 100 + + + Index, 1999 Q2 = 1000 + + + Index, 1999 Q3 = 1000 + + + Index, 1999/2000 = 100 + + + Index, 2000 = 100 + + + Index, 2000 Mar 17 = 100 + + + Index, 2000 May = 100 + + + Index, 2000/2001 = 100 + + + Index, 2001 = 100 + + + Index, 2001 Dec = 100 + + + Index, 2001 Dec 28 = 1000 + + + Index, 2002 Dec 31 = 5000 + + + Index, Previous year = 100 + + + Index, Trend = 100 + + + Italian Lira / Constant 1990 Italian Lira + + + Italian Lira / Constant 1995 Italian Lira + + + Jobs + + + Luxembourg Franc / Constant 1995 Luxembourg Franc + + + Man-Days + + + Man-Years + + + Months + + + No Unit Identified + + + One Thousand Litre + + + Per Cent + + + Per Cent Per Year + + + Percentage change against January 1987 + + + Percentage Points + + + Persons + + + Points + + + Pure Number + + + Shares + + + Square Meter + + + Standard Units Of Labour + + + Units + + + US Dollar / Barrel + + + US Dollar / Ton + + + Chained 2000 Norwegian Krone + + + Constant 1982 / 1983 New Zealand Dollar + + + Constant 1996 Chilean Peso + + + Constant 1999 Saudi Arabian Riyal + + + Constant 2000 Euro + + + Constant 2000 Finnish Markka + + + Euro / Barrel + + + Index, 1956 Jun = 100 + + + Index, 1970 Q1 = 100 + + + Index, 1972 Jul = 100 + + + Index, 1992 Jun = 100 + + + Index, 1993 Apr = 100 + + + Index, 1996 Q4 = 1000 + + + Index, 1998 Dec = 100 + + + Index, 2000 Dec = 100 + + + Index, 2002 = 100 + + + Index, 2002 Feb 28 = 1000 + + + Previous Year Australian Dollar + + + Index, 2002 Dec = 100 + + + Constant 1968 Swedish Krona + + + Index, 1993 Q4 = 100 + + + Chained 2001 / 2002 Australian Dollar + + + Constant 2000 Hungarian Forint + + + Number of contracts + + + Index, 2001/2002 = 100 + + + Index, 1994 Dec = 100 + + + Index, 1982 Aug 10 = 100 + + + Index, 1983 Jan 01 = 45.38 + + + Chained 2000 Pound Sterling + + + Constant 2000 Belgian Franc + + + Index, Previous year = 1000 + + + Chained 2000 Swedish Krona + + + Chained 2000 US Dollar + + + Index, 2003 May = 100 + + + Chained 2001 Norwegian Krone + + + Index, 2002 Q1 = 100 + + + Index, 1977 Dec = 100 + + + Index, 2002 Q2 = 1000 + + + Previous Year Poland New Zloty + + + Index, Previous month = 100 + + + Index, 1994 Apr 16 = 1000 + + + Index, 1991 Apr 16 = 1000 + + + Index, 1994 Dec 31 = 1000 + + + Index, 1998 Dec 31 = 12795.6 + + + Constant 1993 Mexican Peso + + + Index, 2000 Jan = 100 + + + Index, 2000 Sep = 100 + + + Index, 1983 = 43.85 + + + Index, 1991 Jan = 100 + + + Chained 2001 Pound Sterling + + + Constant 2000 Czech Koruna + + + Index, 2000 Q4 = 100 + + + Index, 1995 Dec 31 = 100 + + + Index, 1996 Feb = 100 + + + Chained 2002 / 2003 Australian Dollar + + + Constant 2000 Russian Federation Rouble + + + Index, Corresponding month of previous year = 100 + + + Index, 2002/2003 = 100 + + + Constant 2000 Indonesia Rupiah + + + Index, 2001 Q4 = 100 + + + Chained 1995 Czech Koruna + + + Chained 2000 Swiss Franc + + + Index, 1938 = 1 + + + Index, 1949 = 100 + + + Herfindahl index, max 10000 + + + Index, Corresponding quarter of previous year = 100 + + + Index, 2003/2004 = 100 + + + Index, 2003 Dec = 1000 + + + Constant 2000 South African Rand + + + Chained 2002 Norwegian Krone + + + Index, 2004 Dec 30 = 1000 + + + Index, 1948 = 100 + + + Index, 1938 = 100 + + + Index, 2003 = 100 + + + Index, 2003 Dec = 100 + + + Chained 2000 Japanese Yen + + + Constant 1970 Malaysian Ringgit + + + Constant 1978 Malaysian Ringgit + + + Chained 2010 Israel Shekel + + + Chained 2000 Austrian Schilling + + + Chained 2000 Euro + + + Euro / Chained 2000 Euro + + + Index, 2003 Q4 = 1000 + + + Constant 2000 French Franc + + + Index, 1990 Dec 19 = 100 + + + Index, 1994 Jul 20 = 1000 + + + Constant 1993 Argentine Peso + + + Constant 1995 Slovenian Tolar + + + Index, 1994 Jan 01 = 100 + + + Chained 2002 Pound Sterling + + + Chained 2005 PLN - Millions + + + Euro / Constant 2000 Euro + + + French Franc / Constant 2000 French Franc + + + Index, 2004 Dec = 100 + + + Index, 1998 Q2 = 100 + + + Index, 2002 Jun = 100 + + + Index, 1962 Jan = 100 + + + Constant 2000 Lithuanian Litas + + + Index, 1993 Jun = 100 + + + Index, 2000 Jan 01 = 100 + + + Index, 1996 Dec = 100 + + + Index, Corresponding period of previous year = 100 + + + Chained 2003 / 2004 Australian Dollar + + + Index, Year on Year + + + Index + + + Constant 1995 Slovakian Koruna + + + Index, 1986 Jan = 100 + + + Index, 1990 Dec 31 = 32.56 + + + Constant 1987 Turkish Lira + + + Index, 1995 Jan = 100 + + + Chained 2000 Danish Krone + + + Diverse + + + Index, 2000 Jun 30 = 100 + + + Chained 2003 Euro + + + Index, 2000 Jun 03 = 100 + + + Index, 1999 H2 = 100 + + + Index, 1992 Jul = 100 + + + Index, 1996 Jun 03 = 100 + + + Chained 2003 Norwegian Krone + + + Index, Previous Quarter = 100 + + + Index, 2000 Oct 20 = 100 + + + Per Cent Per Month + + + Index, 2005 Q2 = 100 + + + Index, 1942 Mar 27 = 100 + + + Index, 1997 Jun = 100 + + + Previous Year Bulgarian Lev + + + Index, 2005 Nov 30 = 1000 + + + Index, 1986 Jan 1 = 1 + + + Index, 1990 Dec 31 = 33 + + + Index, 2004 Jan = 100 + + + Constant 2000 Latvian Lat + + + Index, 2000 Jan 1 = 1000 + + + Index, 1993 Sep 14 = 100 + + + Constant 2000 Estonian Kroon + + + Per Cent Per Quarter + + + Constant 1993/1994 Indian Rupee + + + Index, 1993/1994 = 100 + + + Index, Average Month of 2000 = 100 + + + Index, 2005 = 100 + + + Index, 2004 = 100 + + + Index, 1995 Nov 03 = 1000 + + + Index, 1980 Dec = 100 + + + Constant 1985 Philippine Peso + + + Index, 2000 Q3 = 100 + + + Chained 2000 Israel Shekel + + + Index, 2005 Dec = 100 + + + Index, 1990 Feb 28 = 1022.05 + + + Index, 1996 Nov 14 = 1000 + + + Index, 2005 Dec = 5000 + + + Index, 2006 Jan = 100 + + + Constant 2000 Italian Lira + + + Chained 2000 Italian Lira + + + Index, 2005 Q4 = 100 + + + Index, 2004/2005 = 100 + + + Index, 1988 May = 100 + + + Index, 1997 Mar = 100 + + + Index, 1998 Jan 1 = 1000 + + + Constant 2000 Slovakian Koruna + + + Index, 2003 Q1 = 100 + + + Constant 1999/2000 Indian Rupee + + + Index, 1997 July 1 = 1000 + + + Index, December of previous year = 100 + + + Chained 2004 / 2005 Australian Dollar + + + Index, 2001 Dec 15 = 100 + + + Constant 2000 Spanish Peseta + + + Constant 1995 Macedonian Denar + + + Index, 2006 Q2 = 1000 + + + Constant 2000 Singapore Dollar + + + Index, 1978/1979 = 100 + + + Index, 2005 Jan = 100 + + + Chained 2000 Lithuanian Litas + + + Index, 1999 Dec 31 = 100 + + + Chained 2004 Euro + + + Chained 2004 Norwegian Krone + + + Index, 1997 Dec = 100 + + + Index, 2006 = 100 + + + Index, 2006 Dec = 100 + + + Index, 1998 Dec 31 = 1279.56 + + + Index, 2004 Dec 31 = 100 + + + Constant 2000 South Korean Won + + + Constant 1997 Macedonian Denar + + + Index, 2003 = 1 + + + Index, 2003 Sep = 100 + + + Index, 1980 Jan 04 = 100 + + + Constant 2000 Malaysian Ringgit + + + Chained 2002 Canadian Dollar + + + Constant 2002 Canadian Dollar + + + Canadian Dollar / Constant 2002 Canadian Dollar + + + Constant 2003 Chilean Peso + + + Index, 1996-2006=100 + + + Chained 2005 Euro + + + Constant 1997 Croatian Kuna + + + Chained 2005 Hong Kong Dollar + + + Chained 2005 / 2006 Australian Dollar + + + Chained 2005 Deutsche Mark + + + Chained 2005 Norwegian Krone + + + Years + + + Index, 2005/2006 = 100 + + + Index, 2007 Dec = 100 + + + Constant 1998 Turkish Lira + + + Index, 2007 = 100 + + + Chained 2006 Hong Kong Dollar + + + Constant 2003 Mexican Peso + + + Index, 2008 Apr = 100 + + + Per Thousand + + + Chained 2005 Israel Shekel + + + Chained 2006 Euro + + + Chained 2006 / 2007 Australian Dollar + + + Index, 2006/2007 = 100 + + + Index, 2007 Nov = 100 + + + Index, 2003 Jan = 100 + + + Index, 1992 Sep = 100 + + + Index, 1995 Jun = 100 + + + Constant 1997 Turkish New Lira + + + Index, 2008 Dec = 100 + + + Index, 2008 = 100 + + + Chained 2005 South Korean Won + + + Chained 2007 Hong Kong Dollar + + + 100 Persons + + + Per Ten Thousand + + + Chained 2007 Euro + + + Chained 2005 US Dollar + + + Index, 2007 Q1 = 100 + + + Index, Average Month of 2005 = 100 + + + Index, 2008 Dec 31 = 100 + + + Constant 2000 Bulgarian Lev + + + Constant 2001 Bulgarian Lev + + + Chained 2007 / 2008 Australian Dollar + + + Index, 2008/2009 = 100 + + + Chained 2007 Norwegian Krone + + + Constant 2005 South African Rand + + + Index, 2007/2008 = 100 + + + Index, 2009 = 100 + + + Index, 1996 Jan = 100 + + + Constant 2004/2005 Indian rupee + + + Chained 2009 Swedish Krona + + + Constant 2005 Singapore Dollar + + + Chained 2008 Euro + + + Chained 2006 Pound Sterling + + + Chained 2008 Hong Kong Dollar + + + Index, 2001 = 1000 + + + Index, 2009 = 1000 + + + Index, 28/12/2007 = 3051.83 + + + Chained 2008/2009 Australian Dollar + + + Index, 2003 Apr 1 = 100 + + + Constant 2003 Russian Federation Rouble + + + Index, 2nd half of 2010 Dec = 100 + + + Index, 2010 = 100 + + + Index, 2008 Q1 = 100 + + + Index, 2010 Dec = 100 + + + Index, 1993 Jan = 100 + + + Constant 2000 Croatian Kuna + + + Index, 2010 Q4 = 1000 + + + Index, 2000 H1=100 + + + Index, 2009/2010=100 + + + Chained 2010 Swedish Krona + + + Constant 2000 Macedonian Denar + + + Index, 2011 Jun = 100 + + + Constant 2000 Philippine Peso + + + Index, 2007 Jun = 100 + + + Index, 2009 Jan = 100 + + + Index, 2010 Jan = 100 + + + Constant 2005 Bulgarian Lev + + + Constant 2005 Hungarian Forint + + + Constant 2005 Macedonian Denar + + + Chained 2005 Lithuanian Litas + + + Constant 2008 Russian Federation Rouble + + + Chained 2009/2010 Australian Dollar + + + Chained 2009 Norwegian Krone + + + Index, 2000 Mar = 100 + + + Index, 2010 Q1 = 100 + + + Chained 2005 Japanese Yen + + + Chained 2009 Euro + + + Constant 2005 Euro + + + Index, 2011 = 100 + + + Chained 2005 Danish Krone + + + Chained 2002 Thai Baht + + + Index, 2011 Jun 30 = 1000 + + + Constant 2006 Euro + + + Constant 2005 Malaysian Ringgit + + + Chained 2008 Chilean Peso + + + Index, 1994 Jan = 100 + + + Index, 2012 Apr = 100 + + + Chained 2010 Euro + + + Chained 2010 Hong Kong Dollar + + + Index, 2011/2012 = 100 + + + Index, 2006 Q1 = 100 + + + Chained 2010 Norwegian Krone + + + Index, 2010/2011 = 100 + + + Chained 2010/2011 Australian Dollar + + + Index, 2012 = 100 + + + Index, 1912 = 100 + + + Chained 2011 Hong Kong Dollar + + + Chained 2012 Swedish Krona + + + Constant 2012 Swedish Krona + + + Index, 2001 Mar = 100 + + + Index, 2013 Mar = 100 + + + Index, 2010 Q4 = 100 + + + Chained 2009 US dollar + + + Chained 2007 Canadian Dollar + + + Chained 1990 Algerian Dinar + + + Chained 2009/2010 Australian Dollar + + + Previous year Bosnia & Gerzegovina Mark + + + Chained 1990 Chinese Renminbi + + + Chained 2005 Colombian Peso + + + Chained 2005 Czech Krona + + + Chained 2005 Polish Zloty + + + Chained 2000 Romanian leu + + + Chained 1999 Saudi Arabia Riyal + + + Chained 1988 Thai Bhat + + + Constant 1990 Algerian Dinar + + + Constant 1990 Chinese Renminbi + + + Constant 2005 Colombian Peso + + + Constant 1995 Saudi Arabia Riyal + + + Constant 2008 Chilean Peso + + + Constant 1994 Peruvian Sol + + + Fiscal year 2008 = 100 + + + Chained 2005 Icelandic Krona + + + Chained 2011 Euro + + + Index, 1990 Jan= 100 + + + Chained 2005 Swiss Franc + + + Constant 2005 Croatian Kuna + + + Constant 2000 Romanian New Leu + + + Constant 2005 Icelandic Krona + + + Constant 2011 Norwegian Krone + + + Constant 2005 Korean Won + + + Constant 2008 Mexican Peso + + + Constant 2010 Israel Shekel + + + Constant 2005 Polish Zloty + + + Chained 2005 Hungarian Florint + + + Chained 2010 Latvian Lat + + + Constant 2010 Chinese Renminbi + + + Index, 2013 = 100 + + + Constant 2010 Eur + + + Chained 2010 Pound Sterling + + + Chained 2010 Korean won + + + Index, 2009 Q1 = 100 + + + Index, 2010 Q2 to 2011 Q1 = 100 + + + Index, 2013 Q4 = 100 + + + Constant 2004 Argentine Peso + + + Percentage of GDP + + + Year-on-year changes, in per cent + + + United Arab Emirates Dirham + + + Argentine Peso + + + Austrian Schilling + + + Australian Dollar + + + Bosnia Herzegovina Convertible Marka + + + Belgian Franc + + + Belgian Financial Franc + + + Bulgarian Lev + + + Brazilian Cruzeiro (historical up to 1993/08) + + + Brazilian Real + + + Brazilian Cruzeiro Real (historical 1993/08-1994/07) + + + Belarusian Rouble + + + Canadian Dollar + + + Swiss Franc + + + Chilean Peso + + + Chinese Renminbi Yuan + + + Colombian Peso + + + Serbian Dinar + + + Cyprus Pound + + + Czech Koruna + + + Deutsche Mark + + + Danish Krone + + + Algerian Dinar + + + Estonian Kroon + + + Spanish Peseta + + + Euro + + + Finnish Marka + + + French Franc + + + Pound Sterling + + + Greek Drachma + + + Hong Kong Dollar + + + Croatian Kuna + + + Hungarian Forint + + + Indonesia Rupiah + + + Irish Punt + + + Israel New Shekel + + + Israel Shekel + + + Indian Rupee + + + Icelandic Krona + + + Italian Lira + + + Japanese Yen + + + South Korean Won + + + Kazakhstan Tenge + + + Albanian Lek + + + Sri Lankan Rupee + + + Lithuania Litas + + + Luxembourg Franc + + + Latvian Lat + + + Moroccan Dirham + + + Macedonian Denar + + + Maltese Lira + + + Mexican Peso + + + Mexican Peso (historical) + + + Malaysian Ringgit + + + Dutch Guilder + + + Norwegian Krone + + + New Zealand Dollar + + + Panama Balboa + + + Peru New Sol + + + Philippine Piso + + + Poland New Zloty + + + Poland Zloty + + + Portuguese Escudo + + + Paraguay Guarani + + + Romanian Leu + + + Romanian New Leu + + + Russian Rouble + + + Russian Rouble (prior to 1 Januar 1998) + + + Saudi Riyal + + + SDR + + + Swedish Krona + + + Singapore Dollar + + + Slovenia Tolar + + + Slovak Koruna + + + Thai Baht + + + Turkish Lira + + + Turkish New Lira + + + Taiwan New Dollar + + + US Dollar + + + Uruguayan Peso (historical) + + + Uruguayan Peso + + + Venezuela Bolivar + + + European Currency Unit + + + South African Rand + + + Temp unit --> CODE OBSOLETE SINCE 2013.04.05 + + + Domestic currency (incl. conversion to current currency made using a fix parity) + + + Percentage of GDP (using PPP exchange rates) + + + Total (all currencies) + + + Bahraini Dinar + + + + Collection + + Average of observations through period + + + Beginning of period + + + End of period + + + Highest in period + + + Lowest in period + + + Middle of period + + + Summed through period + + + Unknown + + + Other + + + Annualised summed + + + + Observation confidentiality code list + + Confidential statistical information + + + Secondary confidentiality set by the sender, not for publication + + + Free + + + Not for publication, restricted for internal use only + + + Secondary confidentiality set and managed by the receiver, not for publication + + + + Decimals codelist (BIS, ECB) + + Zero + + + One + + + Ten + + + Eleven + + + Twelve + + + Thirteen + + + Fourteen + + + Fifteen + + + Two + + + Three + + + Four + + + Five + + + Six + + + Seven + + + Eight + + + Nine + + + Sixteen + + + + Derivatives basis + + Gross - gross + + + Net - gross + + + Net - net + + + + Derivatives instrument + + Total (all instruments) + + + Spot + + + Forwards and swaps + + + Outright forwards and FX swaps + + + Outright forwards + + + Forward contracts for diff + + + Non-deliverable forwards + + + FX swaps + + + Currency swaps + + + Deliverable forwards + + + Forward rate agreemets and IR Swaps + + + Forward rate agreements + + + Interest rate swaps + + + Currency swaps - exchange of notional + + + Currency swaps - only exchange of interest + + + Futures + + + Options + + + Options sold + + + Options bought + + + Credit default swaps + + + Single-name + + + Multi-name + + + Index products + + + Other instruments + + + Other interest rate swaps + + + Overnight indexed swaps + + + + Derivatives execution method + + Single bank proprietary platforms + + + Voice broker + + + Total (all methods) + + + Voice - direct + + + Voice - indirect + + + Electronic - direct - single bank system + + + Electronic - direct - other + + + Electronic - indirect - Reuters EBS + + + Electronic - indirect - other ECN + + + Interdealer direct + + + Customer direct + + + Electornic Broking System + + + Multi-bank dealing systems + + + Electronic - indirect - Dark pools + + + Electronic - indirect - other + + + Undistributed + + + Technical Residuals + + + Technical residual (Electronic - indirect - Disclosed venues) + + + Electronic - indirect - Disclosed venues + + + + Code list for Frequency (FREQ) + + Annual + + + Daily - business week (not supported) + + + Daily + + + Event (not supported) + + + Half-yearly + + + Monthly + + + Quarterly + + + Weekly + + + + Issue maturity code list + + Total (all maturities) + + + On demand and open positions + + + Short-term + + + Over 1 year and up to 5 years + + + Commercial papers + + + Over 5 years + + + 7 days or less + + + Over 7 days and up to 1 month + + + Other short-term issues + + + Over 1 month and up to 3 months + + + Long-term + + + Over 3 months and up to 1 year + + + Over 1 year and up to and including 2 years + + + Over 2 years + + + 2-5 years + + + Over 7 days and up to 1 year + + + 5-10 years + + + Overnight and less than 3 months + + + More than 10 years + + + 3 months and less than 1 year + + + Up to and including 1 year + + + Over 1 year + + + Unallocated by maturity + + + Less than 1 year + + + 1 year and over + + + Over 3 months and up to 6 months + + + Over 6 months + + + + Derivatives risk category + + Total (all risk categories) + + + Foreign exchange + + + Foreign exchange including gold + + + Interest rate + + + Equity + + + Single equity + + + Equity index + + + Commodities + + + Precious metals + + + Gold + + + Other precious metals + + + Non-precious metals + + + Agricultural commodities + + + Energy products + + + Other commodities + + + Credit Derivatives + + + Other derivatives + + + Unallocated + + + + Observation status codelist (BIS, ECB, Eurostat-BoP) + + Normal value + + + Break + + + Estimated value + + + Forecast value + + + Missing value; holiday or weekend + + + Imputed value (CCSA definition) + + + Missing value; data exist but were not collected + + + Missing value; data cannot exist + + + Provisional value + + + Missing value; suppressed + + + Strike + + + + Counterparty + + All counterparties (net) + + + All counterparties (gross) + + + Reporting dealers (net) + + + Reporting dealers (gross) + + + Other financial institutions + + + Non-financial institutions + + + Non-reporters + + + Banks and security firms + + + Insurance and financial guaranty firms + + + SPVs, SPCs, or SPEs + + + Hedge funds + + + Other residual financial customers + + + Other financial customers + + + + Currency, maturity, equity region + + Investment grade (AAA-BBB) + + + AAA/AA + + + A/BBB + + + BB and below + + + Non-rated + + + Sovereigns + + + Non-sovereigns + + + Financial firms + + + Non-financial firms + + + Portfolio or structured + + + Total (All currencies maturities and regions) + + + Residual + + + Other Currencies + + + Other EMS Currencies + + + US Equities + + + Japanese Equities + + + European Equities + + + Latin American Equities + + + Other Asian Equities + + + Other Equities + + + Maturity of one year or less + + + Maturity over 1 year and up to 5 years + + + Maturity over 5 years + + + UAE Dirham + + + Netherlands Antillian Guilder + + + Argentine peso + + + Australian dollar + + + Aruban Guilder + + + Barbados Dollar + + + Belgian franc + + + Bahraini Dinar + + + Bermudian Dollar + + + Brazilian Real + + + Bahamian Dollar + + + Belize Dollar + + + Canadian dollar + + + Swiss franc + + + Chilean Peso + + + Chinese Renminbi + + + Colombian Peso + + + Costa Rican Colon + + + Czech Koruna + + + Deutsche mark + + + Danish krone + + + Dominican Peso + + + Estonian Kroon + + + Egyptian Pound + + + Spanish peseta + + + Euro + + + Finnish markka + + + French franc + + + Pound sterling + + + Greek drachma + + + Hong Kong dollar + + + Hungarian forint + + + Indonesian Rupiah + + + Irish pound + + + Shekel + + + Indian rupiah + + + Iceland Krona + + + Italian lira + + + Japanese yen + + + Korean won + + + Cayman Islands Dollar + + + Luxembourg franc + + + Mexican peso + + + Malaysian ringgit + + + Dutch guilder + + + Norwegian krone + + + New Zealand dollar + + + Nuevo Sol + + + Philippine Peso + + + Polish zloty + + + Portuguese escudo + + + Romania Lei + + + Russian Rouble + + + Saudi Riyal + + + Swedish krona + + + Singapore dollar + + + Tolar + + + Slovak Koruna + + + Thai baht + + + Turkish lira + + + Taiwan Dollar + + + US dollar + + + Bolivar + + + European Currency Unit + + + South African rand + + + + Reporting country + + All countries + + + Belgium + + + Canada + + + Switzerland + + + Germany + + + France + + + United Kingdom + + + Italy + + + Japan + + + Netherlands + + + Sweden + + + United States + + + + Measure (notional amount, credit exposures, market values) + + Notional amounts outstanding + + + Gross positive market values + + + Gross negative market values + + + Gross market values + + + Gross positive credit exposure + + + Gross negative credit exposure + + + Notional amounts turnover + + + Number of contracts outstanding + + + Number of contracts turnover + + + Herfindahl index + + + Number of dealers + + + Notional amounts outstanding bought + + + Notional amounts outstanding sold + + + Outstanding - gross credit exposure + + + Premia collected + + + Premia paid + + + Turnover - notional amounts (daily average) + + + Turnover - number of contracts (daily average) + + + Carrying amounts - gross + + + Carrying amounts - net + + + + Derivatives rating + + Total (all ratings) + + + Investment grade + + + AAA / AA + + + A / BBB + + + Below investment grade + + + Non-rated + + + + Derivatives counterparty sector + + Total (all counterparties) + + + Reporting dealers + + + Other financial institutions + + + Non-reporting banks + + + Institutional investors + + + Hedge funds and properietary trading firms + + + Official sector financial institutions + + + Undistributed + + + Central Counterparties + + + Banks and securities firms + + + Insurance and financial guaranty firms + + + SPVs, SPCs or SPEs + + + Hedge funds + + + Other residual financial institutions + + + Non-financial customers + + + Prime brokered + + + Retail-driven + + + Related Party Trades + + + Own branches and subsidiaries + + + Non-reporters + + + + Derivatives risk category + + Total (all sectors) + + + Sovereigns + + + Non-sovereigns + + + Financial firms + + + Non-financial firms + + + Portfolio or structured + + + Securitised products + + + ABS & MBS + + + Other + + + Multiple Sectors + + + + Possible formats for representation of dates, times or dateranges + + CCYYMMDD + + + CCYYMMDDhhmm + + + CCYY + + + CCYYS + + + CCYYQ + + + CCYYMM + + + CCYYWW + + + CCYYCCYY + + + CCYYSCCYYS + + + CCYYQCCYYQ + + + CCYYMMCCYYMM + + + CCYYMMDDCCYYMMDD + + + CCYYWWCCYYWW + + + Daily (or Business) + + + Monthly + + + Annual + + + Quarterly + + + Half-yearly, semester + + + Weekly + + + + Unit Multiplier + + Units + + + Tens + + + Trillions + + + Quadrillions + + + Hundreds + + + Thousands + + + Tens of thousands + + + Millions + + + Billions + + + + + + BIS Concept Scheme + + Seasonal adjustment + + + Availability + + + Unit + Unit + + + Unit + Unit + + + Borrowers' country + + + Breaks + + + CBS bank type + + + CBS reporting basis + + + Credit gap data type + + + Basis, measure + Basis, measure + + + Type of reporting banks + Type of reporting banks + + + Type of claim, counterparty sector and other breakdowns + Type of claim, counterparty sector and other breakdowns + + + Collection Indicator + Collection Indicator + + + Collection explanation detail + + + Compiling agency + + + Coverage + + + Covered area + + + Currency type of booking location + + + Data compilation + + + Decimals + Decimals + + + Data compilation + + + Borrowers + + + Basket + Basket + + + Type + Type + + + + + WEBSTATS_DISPLAY_NAME + WEBSTATS_DISPLAY_NAME + Frequency & Time Range + + + Frequency + Frequency + + + Measure (outstanding / change) + Measure (outstanding / change) + + + Currency, resident / non-resident + Currency, resident / non-resident + + + Counterparty sector, position + Counterparty sector, position + + + Instrument, measure (outstanding / change) + Instrument, measure (outstanding / change) + + + Currency + Currency + + + Counterparty sector, position + Counterparty sector, position + + + Collateral type (for future expansion) + + + Issue currency + + + Issue currency group + + + Original maturity + + + Rate type + + + Remaining maturity + + + Default risk (for future expansion) + + + Issue type + + + Issuer sector - immediate borrower + + + Issuer sector - ultimate borrower + + + Issuer nationality + + + Issuer residence + + + Currency denomination + + + Type of instruments + + + Measure + + + Balance sheet position + + + Type of reporting institutions + + + Currency type of reporting country + + + Parent country + + + Position type + + + Reporting country + + + Counterparty country + + + Counterparty sector + + + Issue market + + + Measure + + + Unit of measure detail + + + Documentation date + + + Observation Confidentiality + Observation Confidentiality + + + Pre-Break Observation + Pre-Break Observation + + + Observation Status + Observation Status + + + Observation Value + Observation Value + + + Instrument + + + Risk category + + + Measure + + + Organisation visibility + + + Priced unit + + + Dissemination format - publications + + + Reference area + Reference area + + + Remaining maturity + + + Reporting country + Reporting country + + + Real estate type + + + Real estate vintage + + + Source + Source + + + Type of adjustment + + + Borrowing sector + + + Lending sector + + + Time Format Code + Time Format Code + + + Time period or range + Time period or range + + + Title + + + Title complement + + + National language title + + + Title (tseries level) + + + Unit of measure + Unit of measure + + + Unit Multiplier + Unit Multiplier + + + Unit type + + + Value + + + Valuation + + + Counterparty location + Counterparty location + + + Location of trade (Exchange or country) + + + Counterparty + + + + + + + + Reporting country + + + + + + + + Currency, maturity, equity region + + + + + + + + Derivatives measure + + + Derivatives instrument + + + Derivatives risk category + + + Derivatives reporting country + + + Derivatives counterparty sector + + + Derivatives counterparty country + + + Derivatives underlying risk sector + + + Derivatives currency denomination leg 1 + + + Derivatives currency denomination leg 2 + + + Derivatives maturity + + + Derivatives rating + + + Derivatives execution method + + + Derivatives basis + + + Currency denomination + + + Lenders sector + + + Borrowers sector + + + Currency + + + Title + + + NEW_CONCEPT + + + + + + BIS derivatives statistics + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py index 7e85d259..dcb9fc7c 100644 --- a/tests/io/test_general_reader.py +++ b/tests/io/test_general_reader.py @@ -52,6 +52,14 @@ def structures_path(): return str(base_path) +@pytest.fixture +def structures_descendants_path(): + base_path = ( + Path(__file__).parent / "samples" / "datastructure_descendants.xml" + ) + return str(base_path) + + @pytest.fixture def dataflow_no_children(): base_path = ( @@ -171,6 +179,27 @@ def test_get_datasets_valid(data_path, structures_path): assert isinstance(dataset.structure, Schema) assert dataset.data is not None assert len(dataset.data) == 1000 + assert len(dataset.structure.artefacts) == 26 + + +def test_get_datasets_valid_descendants( + data_path, structures_descendants_path +): + result = get_datasets(data_path, structures_descendants_path) + assert len(result) == 1 + dataset = result[0] + assert isinstance(dataset.structure, Schema) + assert dataset.data is not None + assert len(dataset.data) == 1000 + assert len(dataset.structure.artefacts) == 45 + assert ( + "urn:sdmx:org.sdmx.infomodel.conceptscheme.Concept=" + "BIS:BIS_CONCEPT_SCHEME(1.0)" + ".TITLE_TS" + ) in dataset.structure.artefacts + assert ( + "urn:sdmx:org.sdmx.infomodel.codelist." "Codelist=BIS:CL_DECIMALS(1.0)" + ) in dataset.structure.artefacts def test_get_datasets_no_data_found(data_path, structures_path): From 8f4a3357beba204c00033ab23e8e8a607defaa1d Mon Sep 17 00:00:00 2001 From: Xavier Sosnovsky Date: Fri, 17 Jan 2025 12:10:09 +0100 Subject: [PATCH 59/62] Add format for registry messages --- src/pysdmx/io/format.py | 1 + 1 file changed, 1 insertion(+) diff --git a/src/pysdmx/io/format.py b/src/pysdmx/io/format.py index a6f80143..b0bb3c6c 100644 --- a/src/pysdmx/io/format.py +++ b/src/pysdmx/io/format.py @@ -22,6 +22,7 @@ class Format(Enum): REFMETA_SDMX_CSV_2_0_0 = f"{_BASE}metadata+csv;version=2.0.0" REFMETA_SDMX_JSON_2_0_0 = f"{_BASE}metadata+json;version=2.0.0" REFMETA_SDMX_ML_3_0 = f"{_BASE}metadata+xml;version=3.0.0" + REGISTRY_SDMX_ML_2_1 = "application/xml" SCHEMA_SDMX_JSON_1_0_0 = f"{_BASE}schema+json;version=1.0.0" SCHEMA_SDMX_JSON_2_0_0 = f"{_BASE}schema+json;version=2.0.0" SCHEMA_SDMX_ML_2_1 = f"{_BASE}schema+xml;version=2.1" From 8963580e091449df1afe7915805fc0041b8ba936 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Fri, 17 Jan 2025 12:14:37 +0100 Subject: [PATCH 60/62] Refactor on code to delete SDMX Format and use general Format Enum. Signed-off-by: javier.hernandez --- src/pysdmx/io/enums.py | 22 -------- src/pysdmx/io/format.py | 4 ++ src/pysdmx/io/input_processor.py | 24 ++++----- src/pysdmx/io/reader.py | 24 ++++----- .../io/xml/sdmx21/writer/__write_aux.py | 24 ++++----- src/pysdmx/io/xml/sdmx21/writer/error.py | 4 +- src/pysdmx/io/xml/sdmx21/writer/generic.py | 4 +- src/pysdmx/io/xml/sdmx21/writer/structure.py | 4 +- .../xml/sdmx21/writer/structure_specific.py | 4 +- tests/io/test_general_reader.py | 12 ----- tests/io/test_input_processor.py | 12 ++--- tests/io/xml/sdmx21/reader/test_reader.py | 52 +++++++++---------- .../io/xml/sdmx21/writer/test_data_writing.py | 28 +++++----- .../sdmx21/writer/test_structures_writing.py | 6 +-- 14 files changed, 97 insertions(+), 127 deletions(-) delete mode 100644 src/pysdmx/io/enums.py diff --git a/src/pysdmx/io/enums.py b/src/pysdmx/io/enums.py deleted file mode 100644 index e304fa67..00000000 --- a/src/pysdmx/io/enums.py +++ /dev/null @@ -1,22 +0,0 @@ -"""IO Enumerations for SDMX files.""" - -from enum import Enum - - -class SDMXFormat(Enum): - """Enumeration of supported SDMX read formats.""" - - SDMX_ML_2_1_STRUCTURE = "SDMX-ML 2.1 Structure" - SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC = "SDMX-ML 2.1 StructureSpecific" - SDMX_ML_2_1_DATA_GENERIC = "SDMX-ML 2.1 Generic" - SDMX_ML_2_1_REGISTRY_INTERFACE = "SDMX-ML 2.1 Registry Interface" - SDMX_ML_2_1_ERROR = "SDMX-ML 2.1 Error" - SDMX_JSON_2_DATA = "SDMX-JSON 2.0.0" - SDMX_JSON_2_STRUCTURES = "SDMX-JSON 2.0.0" - FUSION_JSON = "FusionJSON" - SDMX_CSV_1_0 = "SDMX-CSV 1.0" - SDMX_CSV_2_0 = "SDMX-CSV 2.0" - - def __str__(self) -> str: - """Return the string representation of the format.""" - return self.value diff --git a/src/pysdmx/io/format.py b/src/pysdmx/io/format.py index a6f80143..d5554993 100644 --- a/src/pysdmx/io/format.py +++ b/src/pysdmx/io/format.py @@ -30,6 +30,10 @@ class Format(Enum): STRUCTURE_SDMX_JSON_2_0_0 = f"{_BASE}structure+json;version=2.0.0" STRUCTURE_SDMX_ML_2_1 = f"{_BASE}structure+xml;version=2.1" STRUCTURE_SDMX_ML_3_0 = f"{_BASE}structure+xml;version=3.0.0" + REGISTRY_INTERFACE_SDMX_ML_2_1 = ( + f"{_BASE}registryinterface+xml;version=2.1" + ) + ERROR_SDMX_ML_2_1 = f"{_BASE}error+xml;version=2.1" FUSION_JSON = "application/vnd.fusion.json" diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index ba57c442..2059f959 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -12,7 +12,7 @@ from httpx import get as httpx_get from pysdmx.errors import Invalid, NotImplemented -from pysdmx.io.enums import SDMXFormat +from pysdmx.io.format import Format def __remove_bom(input_string: str) -> str: @@ -44,31 +44,31 @@ def __check_json(input_str: str) -> bool: return False -def __get_sdmx_ml_flavour(input_str: str) -> Tuple[str, SDMXFormat]: +def __get_sdmx_ml_flavour(input_str: str) -> Tuple[str, Format]: flavour_check = input_str[:1000].lower() if ":generic" in flavour_check: - return input_str, SDMXFormat.SDMX_ML_2_1_DATA_GENERIC + return input_str, Format.DATA_SDMX_ML_2_1_GEN if ":structurespecificdata" in flavour_check: - return input_str, SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC + return input_str, Format.DATA_SDMX_ML_2_1_STR if ":structure" in flavour_check: - return input_str, SDMXFormat.SDMX_ML_2_1_STRUCTURE + return input_str, Format.STRUCTURE_SDMX_ML_2_1 if ":registryinterface" in flavour_check: - return input_str, SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE + return input_str, Format.REGISTRY_INTERFACE_SDMX_ML_2_1 if ":error" in flavour_check: - return input_str, SDMXFormat.SDMX_ML_2_1_ERROR + return input_str, Format.ERROR_SDMX_ML_2_1 raise Invalid("Validation Error", "Cannot parse input as SDMX-ML.") -def __get_sdmx_csv_flavour(input_str: str) -> Tuple[str, SDMXFormat]: +def __get_sdmx_csv_flavour(input_str: str) -> Tuple[str, Format]: headers = csv.reader(StringIO(input_str)).__next__() if "DATAFLOW" in headers: - return input_str, SDMXFormat.SDMX_CSV_1_0 + return input_str, Format.DATA_SDMX_CSV_1_0_0 elif "STRUCTURE" in headers and "STRUCTURE_ID" in headers: - return input_str, SDMXFormat.SDMX_CSV_2_0 + return input_str, Format.DATA_SDMX_CSV_2_0_0 raise Invalid("Validation Error", "Cannot parse input as SDMX-CSV.") -def __check_sdmx_str(input_str: str) -> Tuple[str, SDMXFormat]: +def __check_sdmx_str(input_str: str) -> Tuple[str, Format]: """Attempts to infer the SDMX format of the input string.""" if __check_xml(input_str): return __get_sdmx_ml_flavour(input_str) @@ -81,7 +81,7 @@ def __check_sdmx_str(input_str: str) -> Tuple[str, SDMXFormat]: def process_string_to_read( sdmx_document: Union[str, Path, BytesIO], -) -> Tuple[str, SDMXFormat]: +) -> Tuple[str, Format]: """Processes the input that comes into read_sdmx function. Automatically detects the format of the input. The input can be a file, diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 135e012d..3f96ac60 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -7,7 +7,7 @@ from pysdmx.errors import Invalid, NotFound from pysdmx.io.csv.sdmx10.reader import read as read_csv_v1 from pysdmx.io.csv.sdmx20.reader import read as read_csv_v2 -from pysdmx.io.enums import SDMXFormat +from pysdmx.io.format import Format from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.xml.sdmx21.reader.error import read as read_error from pysdmx.io.xml.sdmx21.reader.generic import read as read_generic @@ -58,22 +58,22 @@ def read_sdmx( Union[ItemScheme, Dataflow, DataStructureDefinition] ] = [] result_submission: Sequence[SubmissionResult] = [] - if read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE: + if read_format == Format.STRUCTURE_SDMX_ML_2_1: # SDMX-ML 2.1 Structure result_structures = read_structure(input_str, validate=validate) - elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: + elif read_format == Format.DATA_SDMX_ML_2_1_GEN: # SDMX-ML 2.1 Generic Data result_data = read_generic(input_str, validate=validate) - elif read_format == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: + elif read_format == Format.DATA_SDMX_ML_2_1_STR: # SDMX-ML 2.1 Structure Specific Data result_data = read_str_spe(input_str, validate=validate) - elif read_format == SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE: + elif read_format == Format.REGISTRY_INTERFACE_SDMX_ML_2_1: # SDMX-ML 2.1 Submission result_submission = read_sub(input_str, validate=validate) - elif read_format == SDMXFormat.SDMX_ML_2_1_ERROR: + elif read_format == Format.ERROR_SDMX_ML_2_1: # SDMX-ML 2.1 Error read_error(input_str, validate=validate) - elif read_format == SDMXFormat.SDMX_CSV_1_0: + elif read_format == Format.DATA_SDMX_CSV_1_0_0: # SDMX-CSV 1.0 result_data = read_csv_v1(input_str) else: @@ -85,15 +85,15 @@ def read_sdmx( # Returning a Message class if read_format in ( - SDMXFormat.SDMX_CSV_1_0, - SDMXFormat.SDMX_CSV_2_0, - SDMXFormat.SDMX_ML_2_1_DATA_GENERIC, - SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC, + Format.DATA_SDMX_CSV_1_0_0, + Format.DATA_SDMX_CSV_2_0_0, + Format.DATA_SDMX_ML_2_1_GEN, + Format.DATA_SDMX_ML_2_1_STR, ): # TODO: Add here the Schema download for Datasets, based on structure # TODO: Ensure we have changed the signature of the data readers return Message(data=result_data) - elif read_format == SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE: + elif read_format == Format.REGISTRY_INTERFACE_SDMX_ML_2_1: return Message(submission=result_submission) # TODO: Ensure we have changed the signature of the structure readers diff --git a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py index 6b3d742f..860aa82d 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py @@ -5,7 +5,7 @@ from typing import Dict, List, Optional, Sequence, Tuple from pysdmx.errors import Invalid, NotImplemented -from pysdmx.io.enums import SDMXFormat +from pysdmx.io.format import Format from pysdmx.io.pd import PandasDataset from pysdmx.model import Role, Schema from pysdmx.model.dataset import Dataset @@ -13,11 +13,11 @@ from pysdmx.util import parse_short_urn MESSAGE_TYPE_MAPPING = { - SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: "GenericData", - SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: "StructureSpecificData", - SDMXFormat.SDMX_ML_2_1_STRUCTURE: "Structure", - SDMXFormat.SDMX_ML_2_1_ERROR: "Error", - SDMXFormat.SDMX_ML_2_1_REGISTRY_INTERFACE: "RegistryInterface", + Format.DATA_SDMX_ML_2_1_GEN: "GenericData", + Format.DATA_SDMX_ML_2_1_STR: "StructureSpecificData", + Format.STRUCTURE_SDMX_ML_2_1: "Structure", + Format.ERROR_SDMX_ML_2_1: "Error", + Format.REGISTRY_INTERFACE_SDMX_ML_2_1: "RegistryInterface", } ABBR_MSG = "mes" @@ -51,7 +51,7 @@ URN_DS_BASE = "urn:sdmx:org.sdmx.infomodel.datastructure.DataStructure=" -def __namespaces_from_type(type_: SDMXFormat) -> str: +def __namespaces_from_type(type_: Format) -> str: """Returns the namespaces for the XML file based on type. Args: @@ -63,18 +63,18 @@ def __namespaces_from_type(type_: SDMXFormat) -> str: Raises: NotImplemented: If the MessageType is not implemented """ - if type_ == SDMXFormat.SDMX_ML_2_1_STRUCTURE: + if type_ == Format.STRUCTURE_SDMX_ML_2_1: return f"xmlns:{ABBR_STR}={NAMESPACES[ABBR_STR]!r} " - elif type_ == SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC: + elif type_ == Format.DATA_SDMX_ML_2_1_STR: return f"xmlns:{ABBR_SPE}={NAMESPACES[ABBR_SPE]!r} " - elif type_ == SDMXFormat.SDMX_ML_2_1_DATA_GENERIC: + elif type_ == Format.DATA_SDMX_ML_2_1_GEN: return f"xmlns:{ABBR_GEN}={NAMESPACES[ABBR_GEN]!r} " else: raise NotImplemented(f"{type_} not implemented") def create_namespaces( - type_: SDMXFormat, ss_namespaces: str = "", prettyprint: bool = False + type_: Format, ss_namespaces: str = "", prettyprint: bool = False ) -> str: """Creates the namespaces for the XML file. @@ -116,7 +116,7 @@ def create_namespaces( ) -def get_end_message(type_: SDMXFormat, prettyprint: bool) -> str: +def get_end_message(type_: Format, prettyprint: bool) -> str: """Returns the end message for the XML file. Args: diff --git a/src/pysdmx/io/xml/sdmx21/writer/error.py b/src/pysdmx/io/xml/sdmx21/writer/error.py index 585e55f2..eb051e8a 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/error.py +++ b/src/pysdmx/io/xml/sdmx21/writer/error.py @@ -2,7 +2,7 @@ from typing import Dict, Optional, Sequence -from pysdmx.io.enums import SDMXFormat +from pysdmx.io.format import Format from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.sdmx21.writer.__write_aux import __namespaces_from_type from pysdmx.model.message import Header @@ -28,4 +28,4 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - __namespaces_from_type(SDMXFormat.SDMX_ML_2_1_ERROR) + __namespaces_from_type(Format.ERROR_SDMX_ML_2_1) diff --git a/src/pysdmx/io/xml/sdmx21/writer/generic.py b/src/pysdmx/io/xml/sdmx21/writer/generic.py index a5139ae3..5883a37d 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/generic.py +++ b/src/pysdmx/io/xml/sdmx21/writer/generic.py @@ -5,7 +5,7 @@ import pandas as pd -from pysdmx.io.enums import SDMXFormat +from pysdmx.io.format import Format from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.sdmx21.writer.__write_aux import ( ABBR_GEN, @@ -385,7 +385,7 @@ def write( Returns: The XML string if path is empty, None otherwise. """ - type_ = SDMXFormat.SDMX_ML_2_1_DATA_GENERIC + type_ = Format.DATA_SDMX_ML_2_1_GEN # Checking if we have datasets, # we need to ensure we can write them correctly diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure.py b/src/pysdmx/io/xml/sdmx21/writer/structure.py index be8e654f..f711d210 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure.py @@ -3,7 +3,7 @@ from collections import OrderedDict from typing import Any, Dict, Optional, Sequence, Union -from pysdmx.io.enums import SDMXFormat +from pysdmx.io.format import Format from pysdmx.io.xml.sdmx21.__tokens import ( AGENCIES, AGENCY_ID, @@ -664,7 +664,7 @@ def write( Returns: The XML string if output_path is empty, None otherwise """ - type_ = SDMXFormat.SDMX_ML_2_1_STRUCTURE + type_ = Format.STRUCTURE_SDMX_ML_2_1 elements = {structure.short_urn: structure for structure in structures} if header is None: header = Header() diff --git a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py index 17142102..2f4b32ed 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py +++ b/src/pysdmx/io/xml/sdmx21/writer/structure_specific.py @@ -5,7 +5,7 @@ import pandas as pd -from pysdmx.io.enums import SDMXFormat +from pysdmx.io.format import Format from pysdmx.io.pd import PandasDataset from pysdmx.io.xml.sdmx21.writer.__write_aux import ( ABBR_MSG, @@ -260,7 +260,7 @@ def write( The XML string if path is empty, None otherwise. """ ss_namespaces = "" - type_ = SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC + type_ = Format.DATA_SDMX_ML_2_1_STR # Checking if we have datasets, # we need to ensure we can write them correctly diff --git a/tests/io/test_general_reader.py b/tests/io/test_general_reader.py index dcb9fc7c..639a7cab 100644 --- a/tests/io/test_general_reader.py +++ b/tests/io/test_general_reader.py @@ -5,7 +5,6 @@ from pysdmx.errors import Invalid, NotImplemented from pysdmx.io import read_sdmx -from pysdmx.io.enums import SDMXFormat from pysdmx.io.reader import get_datasets from pysdmx.model import Schema @@ -118,17 +117,6 @@ def test_read_sdmx_json_not_supported(sdmx_json): read_sdmx(sdmx_json, validate=False) -def test_read_format_str(): - assert str(SDMXFormat.SDMX_ML_2_1_STRUCTURE) == "SDMX-ML 2.1 Structure" - assert str(SDMXFormat.SDMX_ML_2_1_DATA_GENERIC) == "SDMX-ML 2.1 Generic" - assert ( - str(SDMXFormat.SDMX_ML_2_1_DATA_STRUCTURE_SPECIFIC) - == "SDMX-ML 2.1 StructureSpecific" - ) - assert str(SDMXFormat.SDMX_CSV_1_0) == "SDMX-CSV 1.0" - assert str(SDMXFormat.SDMX_CSV_2_0) == "SDMX-CSV 2.0" - - def test_read_url_invalid(respx_mock): url = "https://invalidurl.com" respx_mock.get(url).mock( diff --git a/tests/io/test_input_processor.py b/tests/io/test_input_processor.py index 3246450a..1c9eb0e2 100644 --- a/tests/io/test_input_processor.py +++ b/tests/io/test_input_processor.py @@ -4,7 +4,7 @@ import pytest from pysdmx.errors import Invalid, NotImplemented -from pysdmx.io.enums import SDMXFormat +from pysdmx.io.format import Format from pysdmx.io.input_processor import process_string_to_read from pysdmx.io.reader import read_sdmx @@ -50,31 +50,31 @@ def invalid_message_xml(): def test_process_string_to_read(valid_xml, valid_xml_path): infile, read_format = process_string_to_read(valid_xml_path) assert infile == valid_xml - assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE + assert read_format == Format.STRUCTURE_SDMX_ML_2_1 def test_process_string_to_read_bytes(valid_xml, valid_xml_bytes): infile, read_format = process_string_to_read(valid_xml_bytes) assert infile == valid_xml - assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE + assert read_format == Format.STRUCTURE_SDMX_ML_2_1 def test_process_string_to_read_str(valid_xml): infile, read_format = process_string_to_read(valid_xml) assert infile == valid_xml - assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE + assert read_format == Format.STRUCTURE_SDMX_ML_2_1 def test_process_string_to_read_str_path(valid_xml, valid_xml_path): infile, read_format = process_string_to_read(str(valid_xml_path)) assert infile == valid_xml - assert read_format == SDMXFormat.SDMX_ML_2_1_STRUCTURE + assert read_format == Format.STRUCTURE_SDMX_ML_2_1 def test_process_string_to_read_bom(valid_xml, valid_xml_bom): infile, read_format = process_string_to_read(valid_xml_bom) assert infile[:5] == " Date: Fri, 17 Jan 2025 12:20:42 +0100 Subject: [PATCH 61/62] Added MIME for Registry and Error as application/xml Signed-off-by: javier.hernandez --- src/pysdmx/io/format.py | 3 --- src/pysdmx/io/input_processor.py | 2 +- src/pysdmx/io/reader.py | 4 ++-- src/pysdmx/io/xml/sdmx21/writer/__write_aux.py | 2 +- tests/io/xml/sdmx21/reader/test_reader.py | 2 +- 5 files changed, 5 insertions(+), 8 deletions(-) diff --git a/src/pysdmx/io/format.py b/src/pysdmx/io/format.py index 4d83e22c..a081b6c5 100644 --- a/src/pysdmx/io/format.py +++ b/src/pysdmx/io/format.py @@ -31,9 +31,6 @@ class Format(Enum): STRUCTURE_SDMX_JSON_2_0_0 = f"{_BASE}structure+json;version=2.0.0" STRUCTURE_SDMX_ML_2_1 = f"{_BASE}structure+xml;version=2.1" STRUCTURE_SDMX_ML_3_0 = f"{_BASE}structure+xml;version=3.0.0" - REGISTRY_INTERFACE_SDMX_ML_2_1 = ( - f"{_BASE}registryinterface+xml;version=2.1" - ) ERROR_SDMX_ML_2_1 = f"{_BASE}error+xml;version=2.1" FUSION_JSON = "application/vnd.fusion.json" diff --git a/src/pysdmx/io/input_processor.py b/src/pysdmx/io/input_processor.py index 2059f959..382a151f 100644 --- a/src/pysdmx/io/input_processor.py +++ b/src/pysdmx/io/input_processor.py @@ -53,7 +53,7 @@ def __get_sdmx_ml_flavour(input_str: str) -> Tuple[str, Format]: if ":structure" in flavour_check: return input_str, Format.STRUCTURE_SDMX_ML_2_1 if ":registryinterface" in flavour_check: - return input_str, Format.REGISTRY_INTERFACE_SDMX_ML_2_1 + return input_str, Format.REGISTRY_SDMX_ML_2_1 if ":error" in flavour_check: return input_str, Format.ERROR_SDMX_ML_2_1 raise Invalid("Validation Error", "Cannot parse input as SDMX-ML.") diff --git a/src/pysdmx/io/reader.py b/src/pysdmx/io/reader.py index 3f96ac60..f0f1f134 100644 --- a/src/pysdmx/io/reader.py +++ b/src/pysdmx/io/reader.py @@ -67,7 +67,7 @@ def read_sdmx( elif read_format == Format.DATA_SDMX_ML_2_1_STR: # SDMX-ML 2.1 Structure Specific Data result_data = read_str_spe(input_str, validate=validate) - elif read_format == Format.REGISTRY_INTERFACE_SDMX_ML_2_1: + elif read_format == Format.REGISTRY_SDMX_ML_2_1: # SDMX-ML 2.1 Submission result_submission = read_sub(input_str, validate=validate) elif read_format == Format.ERROR_SDMX_ML_2_1: @@ -93,7 +93,7 @@ def read_sdmx( # TODO: Add here the Schema download for Datasets, based on structure # TODO: Ensure we have changed the signature of the data readers return Message(data=result_data) - elif read_format == Format.REGISTRY_INTERFACE_SDMX_ML_2_1: + elif read_format == Format.REGISTRY_SDMX_ML_2_1: return Message(submission=result_submission) # TODO: Ensure we have changed the signature of the structure readers diff --git a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py index 860aa82d..b8370d4d 100644 --- a/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py +++ b/src/pysdmx/io/xml/sdmx21/writer/__write_aux.py @@ -17,7 +17,7 @@ Format.DATA_SDMX_ML_2_1_STR: "StructureSpecificData", Format.STRUCTURE_SDMX_ML_2_1: "Structure", Format.ERROR_SDMX_ML_2_1: "Error", - Format.REGISTRY_INTERFACE_SDMX_ML_2_1: "RegistryInterface", + Format.REGISTRY_SDMX_ML_2_1: "RegistryInterface", } ABBR_MSG = "mes" diff --git a/tests/io/xml/sdmx21/reader/test_reader.py b/tests/io/xml/sdmx21/reader/test_reader.py index eaa06cd8..cf26cab4 100644 --- a/tests/io/xml/sdmx21/reader/test_reader.py +++ b/tests/io/xml/sdmx21/reader/test_reader.py @@ -141,7 +141,7 @@ def test_item_scheme_read(item_scheme_path): def test_submission_result(submission_path): input_str, read_format = process_string_to_read(submission_path) - assert read_format == Format.REGISTRY_INTERFACE_SDMX_ML_2_1 + assert read_format == Format.REGISTRY_SDMX_ML_2_1 result = read_sub(input_str, validate=True) short_urn_1 = "DataStructure=BIS:BIS_DER(1.0)" From 7632e3e79a2b3eba8c9539de752f51efd3348560 Mon Sep 17 00:00:00 2001 From: "javier.hernandez" Date: Fri, 17 Jan 2025 12:22:06 +0100 Subject: [PATCH 62/62] Changed MIME for Error Signed-off-by: javier.hernandez --- src/pysdmx/io/format.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/pysdmx/io/format.py b/src/pysdmx/io/format.py index a081b6c5..e0fe77b2 100644 --- a/src/pysdmx/io/format.py +++ b/src/pysdmx/io/format.py @@ -31,7 +31,7 @@ class Format(Enum): STRUCTURE_SDMX_JSON_2_0_0 = f"{_BASE}structure+json;version=2.0.0" STRUCTURE_SDMX_ML_2_1 = f"{_BASE}structure+xml;version=2.1" STRUCTURE_SDMX_ML_3_0 = f"{_BASE}structure+xml;version=3.0.0" - ERROR_SDMX_ML_2_1 = f"{_BASE}error+xml;version=2.1" + ERROR_SDMX_ML_2_1 = "application/xml" FUSION_JSON = "application/vnd.fusion.json"