From 1560593971fd026fef5751e95f297bfb39017be8 Mon Sep 17 00:00:00 2001 From: Biswaprakash Mahanta <148389538+biswa-mahanta@users.noreply.github.com> Date: Wed, 24 Jul 2024 14:11:25 -0500 Subject: [PATCH 1/2] Create README.md --- README.md | 87 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 87 insertions(+) create mode 100644 README.md diff --git a/README.md b/README.md new file mode 100644 index 0000000..d02e694 --- /dev/null +++ b/README.md @@ -0,0 +1,87 @@ + +

README

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+

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+ Table of Contents +
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  1. + About The Project + +
  2. +
  3. + Getting Started + +
  4. +
  5. Usage
  6. +
  7. Contributing
  8. +
  9. Contact
  10. +
+
+ + + + +## About The Project + +The three MATLAB codes are designed to enable user to perform stochastic simulation of formin mediated filament elongations using experimentally determined parameters. +* The *formin_processivity_steps* program is designed to use experimentally determined probability of formin dissociation per step to stochastically simulate formin mediated filament elongations for 12,000 filaments. +* The *formin_processivity_time* program is designed to use experimentally determined probability of formin dissociation per time to stochastically simulate formin mediated filament elongations for 12,000 filaments. +* The *formin_processivity_prediction* program is designed to stochastically simulate formin mediated filament elongation for user-defined values of fraction FH1 monomer usage along with a series of elongation rates. + + +The work is supported by NIH and by the Genetics and Cell Biology department of University of Minnesota, Twin-cities. + +### Built With + +* **MATLAB by Mathworks** + + + +## Getting Started + +To use the codes, the entire repository can be downloaded from the "code" dropdown menu. Please save them in an accessible location in your computer. + +### Prerequisites + +MATLAB by Mathworks needs to be installed and activated. +* Link to download MATLAB - https://www.mathworks.com/downloads/ + + + +## Contributing + +We welcome any contributions you make to the code. + +If you have a suggestion that would make this better, please fork the repository and create a pull request. + +1. Fork the Project +2. Create your Feature Branch +3. Commit your Changes +4. Push to the Branch +5. Open a Pull Request + + + + +## Contact + +Biswa Mahanta - (www.linkedin.com/in/biswa-mahanta) - biswaprakash2006rta@gmail.com + +Project Link: https://github.com/biswa-mahanta/Stochastic-Simulation-of-Formin-Processivity.git + + + + +

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From 99c6f859420c7a09dd32513bfc212fc8c9af4e01 Mon Sep 17 00:00:00 2001 From: Biswaprakash Mahanta <148389538+biswa-mahanta@users.noreply.github.com> Date: Wed, 24 Jul 2024 14:12:51 -0500 Subject: [PATCH 2/2] Update README.md --- README.md | 1 - 1 file changed, 1 deletion(-) diff --git a/README.md b/README.md index d02e694..df658aa 100644 --- a/README.md +++ b/README.md @@ -21,7 +21,6 @@ Getting Started
  • Usage