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ingest.log
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2 NZ_CP029605.1 Accession associated with non-strain taxa 287 'species', keeping Pseudomonas aeruginosa 24Pae112
2 gi:1 strain:1 seq:1 source:1 associated
3 gi:2 strain:2 seq:2 source:2 associated
4 publications: duplicate (2, 'Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531', '10.1111/j.1574-6968.2008.01406.x')
4 publications: discarding ('Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531.', '10.1111/j.1574-6968.2008.01406.x')
4 gi:3 strain:2 seq:3 source:3 associated
5 publications: duplicate (2, 'Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531', '10.1111/j.1574-6968.2008.01406.x')
5 publications: discarding ('Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531.', '10.1111/j.1574-6968.2008.01406.x')
5 gi:4 strain:2 seq:4 source:4 associated
6 publications: duplicate (2, 'Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531', '10.1111/j.1574-6968.2008.01406.x')
6 publications: discarding ('Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531.', '10.1111/j.1574-6968.2008.01406.x')
6 gi:5 strain:2 seq:5 source:5 associated
7 publications: duplicate (2, 'Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531', '10.1111/j.1574-6968.2008.01406.x')
7 publications: discarding ('Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531.', '10.1111/j.1574-6968.2008.01406.x')
7 gi:6 strain:2 seq:6 source:6 associated
8 No strain name, skipping strain ['PAGI-10', '', 'Contains an rhs family protein', '52.7', '', '', 'EF611306.1', '2.2', '', '', 'Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531.', '19025565', 'The end coordinate is an approximations based on the given start coordinate and size.', 'EF611306.1.fasta', '', '', '']
8 publications: duplicate (2, 'Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531', '10.1111/j.1574-6968.2008.01406.x')
8 publications: discarding ('Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531.', '10.1111/j.1574-6968.2008.01406.x')
8 gi:7 strain:None seq:7 source:7 associated
9 gi:8 strain:3 seq:8 source:8 associated
10 gi:9 strain:4 seq:9 source:9 associated
11 gi:10 strain:4 seq:10 source:10 associated
12 gi:11 strain:5 seq:11 source:11 associated
13 gi:12 strain:6 seq:12 source:12 associated
14 gi:13 strain:7 seq:13 source:13 associated
15 gi:14 strain:8 seq:14 source:14 associated
16 gi:15 strain:9 seq:15 source:15 associated
17 gi:16 strain:10 seq:16 source:16 associated
18 gi:17 strain:11 seq:17 source:17 associated
19 gi:18 strain:6 seq:18 source:18 associated
20 publications: duplicate (11, 'Klockgether, Jens, et al. "Sequence Analysis of the Mobile Genome Island pKLC102 of Pseudomonas Aeruginosa C." Journal of Bacteriology, vol. 186, no. 2, 31 Dec. 2003, pp. 518-534., doi:10.1128/jb.186.2.518-534.2004.', '10.1128/jb.186.2.518-534.2004')
20 publications: discarding ('Klockgether, Jens, et al. "Sequence Analysis of the Mobile Genome Island pKLC102 of Pseudomonas Aeruginosa C." Journal of Bacteriology, vol. 186, no. 2, 31 Dec. 2003, pp. 518-534., doi:10.1128/jb.186.2.518-534.2004', '10.1128/jb.186.2.518-534.2004')
20 gi:19 strain:6 seq:19 source:19 associated
21 gi:20 strain:12 seq:20 source:20 associated
22 gi:21 strain:12 seq:21 source:21 associated
23 gi:22 strain:12 seq:22 source:22 associated
24 gi:23 strain:12 seq:23 source:23 associated
25 gi:24 strain:12 seq:24 source:24 associated
26 gi:25 strain:12 seq:25 source:25 associated
27 gi:26 strain:12 seq:26 source:26 associated
28 gi:27 strain:12 seq:27 source:27 associated
29 gi:28 strain:12 seq:28 source:28 associated
30 gi:29 strain:12 seq:29 source:29 associated
31 gi:30 strain:12 seq:30 source:30 associated
32 KT454971.1 Accession associated with non-strain taxa 287 'species', keeping Pseudomonas aeruginosa strain CCBH4851
32 gi:31 strain:13 seq:31 source:31 associated
33 KT454971.1 Accession associated with non-strain taxa 287 'species', keeping Pseudomonas aeruginosa clone ST277, strain CCBH4851
33 strains: duplicate (13, 'Pseudomonas aeruginosa strain CCBH4851', 'KT454971.1')
33 strains: discarding ('Pseudomonas aeruginosa clone ST277, strain CCBH4851', 'KT454971.1')
33 gi:32 strain:13 seq:32 source:32 associated
34 gi:33 strain:14 seq:33 source:33 associated
35 gi:34 strain:15 seq:34 source:34 associated
36 gi:35 strain:16 seq:35 source:35 associated
37 gi:36 strain:17 seq:36 source:36 associated
38 gi:37 strain:18 seq:37 source:37 associated
39 No GI name, substituting 'cGI' ['', '', 'Putatively codes for capsule-like genes and putative exopolysaccharide synthesis', '', 'Enterococcus faecalis D32', 'NC_018221.1', '', '138', '1901082', '2032259', 'Zischka M, Künne CT, Blom J, et al. Comprehensive molecular, genomic and phenotypic analysis of a major clone of Enterococcus faecalis MLST ST40. BMC Genomics. 2015 16(1):175. Published 2015 Mar 12. doi:10.1186/s12864-015-1367-x', '25887115', '', 'NC_018221.1_1901082_2032259.fasta', '', '', '']
39 gi:38 strain:19 seq:38 source:38 associated
40 gi:39 strain:20 seq:39 source:39 associated
41 gi:40 strain:21 seq:40 source:40 associated
42 gi:41 strain:22 seq:41 source:41 associated
43 No GI name, substituting 'cGI' ['', '', 'Tentatively encodes a metabolic pathway involved in carbohydrate transport and metabolism', '', 'Enterococcus faecium DO', 'AAAK03000019.1', '', '8.5', '7621', '16116', 'Heikens E, van Schaik W, Leavis HL, Bonten MJ, Willems RJ. Identification of a novel genomic island specific to hospital-acquired clonal complex 17 Enterococcus faecium isolates. Appl Environ Microbiol. 2008 74(22):7094-7097. doi:10.1128/AEM.01378-08', '18836023', 'Contig 638 (AAAK03000019)', 'AAAK03000019.1_7621_16116.fasta', '', '', '']
43 gi:42 strain:23 seq:42 source:42 associated
44 gi:43 strain:24 seq:43 source:43 associated
45 No GI name, substituting 'cGI' ['', '', 'Encodes hypothetical proteins, putative transcriptional regulators. And various phage-related genes.', '', 'Enterococcus faecium Aus0004', 'CP003351.1', '', '60', '1607500', '1667500', 'Lam MM, Seemann T, Bulach DM, et al. Comparative analysis of the first complete Enterococcus faecium genome. J Bacteriol. 2012 194(9):2334-2341. doi:10.1128/JB.00259-12', '22366422', '', 'CP003351.1_1607500_1667500.fasta', '', '', '']
45 gi:44 strain:24 seq:44 source:44 associated
46 gi:45 strain:25 seq:45 source:45 associated
47 NZ_LT598663.1 Accession associated with non-strain taxa 1352 'species', keeping Enterococcus faecium ST555–ST796
47 gi:46 strain:26 seq:46 source:46 associated
48 NZ_LT598663.1 Accession associated with non-strain taxa 1352 'species', keeping Enterococcus faecium ST555–ST796
48 gi:47 strain:26 seq:47 source:47 associated
49 BA000037.2 Provided strain name (Vibrio vulnificus YJ016, chr1) replaced with NCBI strain name (Vibrio vulnificus YJ016)
49 gi:48 strain:27 seq:48 source:48 associated
50 BA000037.2 Provided strain name (Vibrio vulnificus YJ016, chr1) replaced with NCBI strain name (Vibrio vulnificus YJ016)
50 gi:49 strain:27 seq:49 source:49 associated
51 BA000037.2 Provided strain name (Vibrio vulnificus YJ016, chr1) replaced with NCBI strain name (Vibrio vulnificus YJ016)
51 gi:50 strain:27 seq:50 source:50 associated
52 BA000037.2 Provided strain name (Vibrio vulnificus YJ016, chr1) replaced with NCBI strain name (Vibrio vulnificus YJ016)
52 gi:51 strain:27 seq:51 source:51 associated
53 BA000037.2 Provided strain name (Vibrio vulnificus YJ016, chr1) replaced with NCBI strain name (Vibrio vulnificus YJ016)
53 gi:52 strain:27 seq:52 source:52 associated
54 BA000037.2 Provided strain name (Vibrio vulnificus YJ016, chr1) replaced with NCBI strain name (Vibrio vulnificus YJ016)
54 gi:53 strain:27 seq:53 source:53 associated
55 BA000037.2 Provided strain name (Vibrio vulnificus YJ016, chr1) replaced with NCBI strain name (Vibrio vulnificus YJ016)
55 gi:54 strain:27 seq:54 source:54 associated
56 BA000038.2 Provided strain name (Vibrio vulnificus YJ016, chr2) replaced with NCBI strain name (Vibrio vulnificus YJ016)
56 gi:55 strain:28 seq:55 source:55 associated
57 BA000038.2 Provided strain name (Vibrio vulnificus YJ016, chr2) replaced with NCBI strain name (Vibrio vulnificus YJ016)
57 gi:56 strain:28 seq:56 source:56 associated
58 AE016795.1 Provided strain name (Vibrio vulnificus CMCP6, chr1) replaced with NCBI strain name (Vibrio vulnificus CMCP6)
58 gi:57 strain:29 seq:57 source:57 associated
59 AE016795.1 Provided strain name (Vibrio vulnificus CMCP6, chr1) replaced with NCBI strain name (Vibrio vulnificus CMCP6)
59 gi:58 strain:29 seq:58 source:58 associated
60 AE016795.1 Provided strain name (Vibrio vulnificus CMCP6, chr1) replaced with NCBI strain name (Vibrio vulnificus CMCP6)
60 gi:59 strain:29 seq:59 source:59 associated
61 AE016795.1 Provided strain name (Vibrio vulnificus CMCP6, chr1) replaced with NCBI strain name (Vibrio vulnificus CMCP6)
61 gi:60 strain:29 seq:60 source:60 associated
62 AE016796.2 Provided strain name (Vibrio vulnificus CMCP6, chr2) replaced with NCBI strain name (Vibrio vulnificus CMCP6)
62 gi:61 strain:30 seq:61 source:61 associated
63 BA000038.2 Provided strain name (Vibrio vulnificus YJ016, chr2) replaced with NCBI strain name (Vibrio vulnificus YJ016)
63 gi:62 strain:28 seq:62 source:62 associated
64 discarding gi type pai
64 CP028827.1 Accession associated with non-strain taxa 666 'species', keeping Vibrio cholerae N16961, chr1
64 gi:63 strain:31 seq:63 source:63 associated
65 discarding gi type pai
65 CP028827.1 Accession associated with non-strain taxa 666 'species', keeping Vibrio cholerae N16961, chr1
65 gi:64 strain:31 seq:64 source:64 associated
66 gi:65 strain:32 seq:65 source:65 associated
67 BA000031.2 Provided strain name (Vibrio parahaemolyticus RIMD2210633, chr1) replaced with NCBI strain name (Vibrio parahaemolyticus RIMD 2210633)
67 gi:66 strain:33 seq:66 source:66 associated
68 BA000031.2 Provided strain name (Vibrio parahaemolyticus RIMD2210633, chr1) replaced with NCBI strain name (Vibrio parahaemolyticus RIMD 2210633)
68 gi:67 strain:33 seq:67 source:67 associated
69 BA000031.2 Provided strain name (Vibrio parahaemolyticus RIMD2210633, chr1) replaced with NCBI strain name (Vibrio parahaemolyticus RIMD 2210633)
69 gi:68 strain:33 seq:68 source:68 associated
70 BA000031.2 Provided strain name (Vibrio parahaemolyticus RIMD2210633, chr1) replaced with NCBI strain name (Vibrio parahaemolyticus RIMD 2210633)
70 gi:69 strain:33 seq:69 source:69 associated
71 BA000031.2 Provided strain name (Vibrio parahaemolyticus RIMD2210633, chr1) replaced with NCBI strain name (Vibrio parahaemolyticus RIMD 2210633)
71 gi:70 strain:33 seq:70 source:70 associated
72 BA000032.2 Provided strain name (Vibrio parahaemolyticus RIMD2210633, chr2) replaced with NCBI strain name (Vibrio parahaemolyticus RIMD 2210633)
72 gi:71 strain:34 seq:71 source:71 associated
73 BA000032.2 Provided strain name (Vibrio parahaemolyticus RIMD2210633, chr2) replaced with NCBI strain name (Vibrio parahaemolyticus RIMD 2210633)
73 gi:72 strain:34 seq:72 source:72 associated
74 gi:73 strain:35 seq:73 source:73 associated
75 BA000037.2 Provided strain name (Vibrio vulnificus YJ016, chr1) replaced with NCBI strain name (Vibrio vulnificus YJ016)
75 gi:74 strain:27 seq:74 source:74 associated
76 gi:75 strain:36 seq:None source:75 associated
77 gi:76 strain:37 seq:None source:76 associated
78 gi:77 strain:38 seq:None source:77 associated
79 gi:78 strain:39 seq:None source:78 associated
80 KY454839.1 Accession associated with non-strain taxa 666 'species', keeping Vibrio cholerae C1, chr1
80 gi:79 strain:40 seq:75 source:79 associated
81 CP001602.2 Provided strain name (Listeria monocytogenes isolate 08-5578) replaced with NCBI strain name (Listeria monocytogenes 08-5578)
81 gi:80 strain:41 seq:76 source:80 associated
82 CM001159.1 Provided strain name (Listeria monocytogenes Scott A) replaced with NCBI strain name (Listeria monocytogenes str. Scott A)
82 gi:81 strain:42 seq:77 source:81 associated
83 discarding gi type pathogenicity_island
83 gi:82 strain:43 seq:78 source:82 associated
84 discarding gi type pathogenicity_island
84 gi:83 strain:44 seq:79 source:83 associated
85 discarding gi type pathogenicity_island
85 NC_002973.6 Provided strain name (Listeria monocytogenes F2365) replaced with NCBI strain name (Listeria monocytogenes serotype 4b str. F2365)
85 gi:84 strain:45 seq:80 source:84 associated
86 discarding gi type pathogenicity_island
86 gi:85 strain:46 seq:None source:85 associated
87 discarding gi type 5_gene_islet
87 AL591824.1 Provided strain name (Listeria monocytogenes EGDe) replaced with NCBI strain name (Listeria monocytogenes EGD-e)
87 gi:86 strain:47 seq:81 source:86 associated
88 CP001602.2 Provided strain name (Listeria monocytogenes isolate 08-5578) replaced with NCBI strain name (Listeria monocytogenes 08-5578)
88 gi:87 strain:41 seq:82 source:87 associated
89 CP001602.2 Provided strain name (Listeria monocytogenes isolate 08-5578) replaced with NCBI strain name (Listeria monocytogenes 08-5578)
89 gi:88 strain:41 seq:None source:88 associated
90 CP001602.2 Provided strain name (Listeria monocytogenes isolate 08-5578) replaced with NCBI strain name (Listeria monocytogenes 08-5578)
90 gi:89 strain:41 seq:None source:89 associated
91 gi:90 strain:48 seq:83 source:90 associated
92 gi:91 strain:48 seq:84 source:91 associated
93 gi:92 strain:49 seq:85 source:92 associated
94 gi:93 strain:49 seq:86 source:93 associated
95 NC_003210.1 Provided strain name (Listeria monocytogenes) replaced with NCBI strain name (Listeria monocytogenes EGD-e)
95 gi:94 strain:50 seq:87 source:94 associated
96 gi:95 strain:51 seq:88 source:95 associated
97 gi:96 strain:52 seq:89 source:96 associated
98 discarding gi type pai
98 gi:97 strain:53 seq:90 source:97 associated
99 discarding gi type pai
99 JYNB01000081.1 Accession associated with non-strain taxa 95486 'species', keeping Burkholderia cenocepacia IPCU-A
99 gi:98 strain:54 seq:91 source:98 associated
100 gi:99 strain:55 seq:92 source:99 associated
101 gi:100 strain:53 seq:93 source:100 associated
102 gi:101 strain:53 seq:94 source:101 associated
103 gi:102 strain:56 seq:95 source:102 associated
104 gi:103 strain:56 seq:96 source:103 associated
105 gi:104 strain:56 seq:97 source:104 associated
106 gi:105 strain:56 seq:98 source:105 associated
107 gi:106 strain:57 seq:99 source:106 associated
108 gi:107 strain:56 seq:100 source:107 associated
109 gi:108 strain:56 seq:101 source:108 associated
110 gi:109 strain:56 seq:102 source:109 associated
111 gi:110 strain:56 seq:103 source:110 associated
112 gi:111 strain:58 seq:104 source:111 associated
113 gi:112 strain:57 seq:105 source:112 associated
114 gi:113 strain:57 seq:106 source:113 associated
115 gi:114 strain:57 seq:107 source:114 associated
116 gi:115 strain:57 seq:108 source:115 associated
117 gi:116 strain:57 seq:109 source:116 associated
118 gi:117 strain:57 seq:110 source:117 associated
119 gi:118 strain:57 seq:111 source:118 associated
120 gi:119 strain:57 seq:112 source:119 associated
121 gi:120 strain:57 seq:113 source:120 associated
122 gi:121 strain:59 seq:114 source:121 associated
123 gi:122 strain:59 seq:115 source:122 associated
124 gi:123 strain:59 seq:116 source:123 associated
125 gi:124 strain:59 seq:117 source:124 associated
126 CP014051.2 Accession associated with non-strain taxa 28901 'species', keeping Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 chromosome
126 gi:125 strain:60 seq:118 source:125 associated
127 CP014051.2 Accession associated with non-strain taxa 28901 'species', keeping Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 chromosome
127 gi:126 strain:60 seq:119 source:126 associated
128 No strain name, skipping strain ['SPI-3', '', 'Encodes for a high-affinity magnesium transport system - required for intramacrophage survival and virulence', '', '', '', 'AF106566.1', '', '', '', 'Blanc-Potard AB, Groisman EA, 1997. "The Salmonella selC locus contains a pathogenicity island mediating intramacrophage survival." EMBO J. 16(17):5376-5385. doi: 10.1093/emboj/16.17.5376 ; Blanc-Potard AB, et al., 1999. "The SPI-3 pathogenicity island of Salmonella enterica." J. Bacteriol. 181(3):998-1004. doi: 10.1128/JB.181.3.998-1004.1999 ; Marcus SL, et al., 2000. "Salmonella pathogenicity islands: big virulence in small packages." Microbes Infect. 2(2):145-156. doi: 10.1016/s1286-4579(00)00273-2 ; Moncrief MB, Maguire ME, 1998. "Magnesium and the role of MgtC in growth of Salmonella typhimurium." Infect. Immun. 66(8):3802-3809. doi: 10.1128/IAI.66.8.3802-3809.1998 ', '9311997 ; 9922266 ; 10742687 ; 9673265', '', 'AF106566.1.fasta', '', '', '']
128 publications: duplicate (64, 'Marcus SL, et al., 2000. "Salmonella pathogenicity islands: big virulence in small packages." Microbes Infect. 2(2):145-156. doi: 10.1016/s1286-4579(00)00273-2', '10.1016/s1286-4579(00)00273-2')
128 publications: discarding ('Marcus SL, et al., 2000. "Salmonella pathogenicity islands: big virulence in small packages." Microbes Infect. 2(2):145-156. doi: 10.1016/s1286-4579(00)00273-2', '10.1016/s1286-4579(00)00273-2')
128 gi:127 strain:None seq:120 source:127 associated
129 No strain name, skipping strain ['SPI-4', '', 'Encodes a type I secretion system that mediates toxin secretion, much like E.coli hemolysin secretion', '44.8', '', '', 'AF060869.1', '', '', '', 'Marcus SL, et al., 2000. "Salmonella pathogenicity islands: big virulence in small packages." Microbes Infect. 2(2):145-156. doi: 10.1016/s1286-4579(00)00273-2 ; Wong KK, et al., 1998. "Identification and sequence analysis of a 27-kilobase chromosomal fragment containing a Salmonella pathogenicity island located at 92 minutes on the chromosome map of Salmonella enterica serovar typhimurium LT2." Infect. Immun. 66(7):3365-3371.doi:10.1128/IAI.66.7.3365-3371.1998', '10742687 ; 9632606', '', 'AF060869.1.fasta', '', '', '']
129 publications: duplicate (64, 'Marcus SL, et al., 2000. "Salmonella pathogenicity islands: big virulence in small packages." Microbes Infect. 2(2):145-156. doi: 10.1016/s1286-4579(00)00273-2', '10.1016/s1286-4579(00)00273-2')
129 publications: discarding ('Marcus SL, et al., 2000. "Salmonella pathogenicity islands: big virulence in small packages." Microbes Infect. 2(2):145-156. doi: 10.1016/s1286-4579(00)00273-2', '10.1016/s1286-4579(00)00273-2')
129 gi:128 strain:None seq:121 source:128 associated
130 FQ312003.1 Provided strain name (Salmonella enterica subsp. enterica serovar Typhimurium SL1344 complete genome) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)
130 publications: duplicate (69, 'Knodler, Leigh A., et al. "Salmonella Effectors within a Single Pathogenicity Island Are Differentially Expressed and Translocated by Separate Type III Secretion Systems." Mol. Microbiol., vol. 43, no. 5, 2002, pp. 1089-1103., doi:10.1046/j.1365-2958.2002.02820.x.', '10.1046/j.1365-2958.2002.02820.x')
130 publications: discarding ('Knodler LA, et al., 2002. "Salmonella effectors within a single pathogenicity island are differentially expressed and translocated by separate type III secretion systems." Mol. Microbiol. 43(5):1089-1103. https://doi.org/10.1046/j.1365-2958.2002.02820.x', '10.1046/j.1365-2958.2002.02820.x')
130 gi:129 strain:61 seq:122 source:129 associated
131 FQ312003.1 Provided strain name (Salmonella enterica subsp. enterica serovar Typhimurium strain SL1344 chromosome) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)
131 gi:130 strain:61 seq:123 source:130 associated
132 No strain name, skipping strain ['SPI-7', '', 'Specific for sv. Typhi, Dublin and Paratyphi C. Encodes the Vi antigen, a capsular exopolysaccaride.', '49.7', '', '', '', '120', '', '', 'Hensel, Michael. "Evolution of Pathogenicity Islands of Salmonella Enterica." International Journal of Medical Microbiology, vol. 294, no. 2-3, 2004, pp. 95-102., doi:10.1016/j.ijmm.2004.06.025. ; Pickard, D., et al. "Composition, Acquisition, and Distribution of the Vi Exopolysaccharide-Encoding Salmonella Enterica Pathogenicity Island SPI-7." Journal of Bacteriology, vol. 185, no. 17, 2003, pp. 5055-5065., doi:10.1128/jb.185.17.5055-5065.2003.', '15493819 ; 12923078', '', '', '', '', '']
132 gi:131 strain:None seq:124 source:131 associated
133 No strain name, skipping strain ['SPI-8', '', 'SPI-8 encodes two bacteriocin pseudogenes and a degenerate integrase. Genes conferring immunity to the baceteriocins remain intact.', '38.1', '', '', '', '', '', '', 'Hensel, Michael. "Evolution of Pathogenicity Islands of Salmonella Enterica." International Journal of Medical Microbiology, vol. 294, no. 2-3, 2004, pp. 95-102., doi:10.1016/j.ijmm.2004.06.025. ; Saroj, S. D., et al. "Distribution of Salmonella Pathogenicity Island (SPI)-8 and SPI-10 among Different Serotypes of Salmonella." Journal of Medical Microbiology, vol. 57, no. 4, 2008, pp. 424-427., doi:10.1099/jmm.0.47630-0.', '15493819 ; 18349359', '', '', '', '', '']
133 gi:132 strain:None seq:None source:132 associated
134 No strain name, skipping strain ['SPI-9', '', 'SPI-9 carries genes that encode for a type I secretory apparatus and single, large repeats in a (RTX)-like toxin protein', '56.7', '', '', '', '', '', '', 'Hensel, Michael. "Evolution of Pathogenicity Islands of Salmonella Enterica." International Journal of Medical Microbiology, vol. 294, no. 2-3, 2004, pp. 95-102., doi:10.1016/j.ijmm.2004.06.025.', '15493819', '', '', '', '', '']
134 gi:133 strain:None seq:None source:133 associated
135 No strain name, skipping strain ['SPI-10', '', 'Has been found to promote survival in macrophages. Encodes for the known virulence factor Sef fimbrae', '46.6', '', '', '', '', '', '', 'Hensel, Michael. "Evolution of Pathogenicity Islands of Salmonella Enterica." International Journal of Medical Microbiology, vol. 294, no. 2-3, 2004, pp. 95-102., doi:10.1016/j.ijmm.2004.06.025. ; Saroj, S. D., et al. "Distribution of Salmonella Pathogenicity Island (SPI)-8 and SPI-10 among Different Serotypes of Salmonella." Journal of Medical Microbiology, vol. 57, no. 4, 2008, pp. 424-427., doi:10.1099/jmm.0.47630-0.', '15493819 ; 18349359', '', '', '', '', '']
135 gi:134 strain:None seq:None source:134 associated
136 No strain name, skipping strain ['SGI-1', '', 'Confers resistance to chloramphenicol, florfenicol, streptomycin, spectinomycin, and tetracycline', '', '', '', 'AF261825.2', '', '', '', 'https://doi.org/10.1111/j.1574-6968.2000.tb09245.x', '', '', 'AF261825.2.fasta', '', '', '']
136 gi:135 strain:None seq:125 source:135 associated
137 gi:136 strain:62 seq:None source:136 associated
138 gi:137 strain:63 seq:None source:137 associated
139 gi:138 strain:63 seq:None source:138 associated
140 gi:139 strain:64 seq:None source:139 associated
141 No strain name, skipping strain ['SGI1-E', '', 'Little is know regarding the particular role of SGI1-E. Variant SGI1-like elements were found with MDR regions consisting of an integron related to that in SGI1 but which contains a 10-kb inversion between two copies of IS6100, one which is inserted in floR', '', '', '', '', '', '', '', 'Boyd, D., et al. "Characterization of Variant Salmonella Genomic Island 1 Multidrug Resistance Regions from Serovars Typhimurium DT104 and Agona." Antimicrobial Agents and Chemotherapy, vol. 46, no. 6, 2002, pp. 1714-1722., doi:10.1128/aac.46.6.1714-1722.2002.', '12019080', '', '', '', '', '']
141 gi:140 strain:None seq:None source:140 associated
142 gi:141 strain:65 seq:126 source:141 associated
143 No strain name, skipping strain ['SGI1-G', '', 'Contains the pse-1 casette array with the additional insertion of the orf513/dfrA10 region, confers resistance to streptomycin-spectinomycin', '', '', '', '', '', '', '', 'Doublet, B., et al. "Salmonella Genomic Island 1 Multidrug Resistance Gene Clusters in Salmonella Enterica Serovar Agona Isolated in Belgium in 1992 to 2002." Antimicrobial Agents and Chemotherapy, vol. 48, no. 7, 2004, pp. 2510-2517., doi:10.1128/aac.48.7.2510-2517.2004.', '15215102', '', '', '', '', '']
143 gi:142 strain:None seq:None source:142 associated
144 gi:143 strain:66 seq:127 source:143 associated
145 No strain name, skipping strain ['SGI1-I', '', 'Contains the dfrA1-orfC cassette array, which confers for the a resistance to trimethoprim', '', '', '', '', '', '', '', 'Boyd, D. A., et al. "Salmonella Genomic Island 1 (SGI1), Variant SGI1-I, and New Variant SGI1-O in Proteus Mirabilis Clinical and Food Isolates from China." Antimicrobial Agents and Chemotherapy, vol. 52, no. 1, 2007, pp. 340-344., doi:10.1128/aac.00902-07. ; Levings, R. S., et al. "The Genomic Island SGI1, Containing the Multiple Antibiotic Resistance Region of Salmonella Enterica Serovar Typhimurium DT104 or Variants of It, Is Widely Distributed in Other S. Enterica Serovars." Journal of Bacteriology, vol. 187, no. 13, 2005, pp. 4401-4409., doi:10.1128/jb.187.13.4401-4409.2005.', '18025121 ; 15968049', '', '', '', '', '']
145 gi:144 strain:None seq:None source:144 associated
146 No strain name, skipping strain ['SGI1-J', '', 'Contains the dfrA1-orfC cassette array, which confers for the a resistance to trimethoprim', '', '', '', '', '', '', '', 'Levings, R. S., et al. "The Genomic Island SGI1, Containing the Multiple Antibiotic Resistance Region of Salmonella Enterica Serovar Typhimurium DT104 or Variants of It, Is Widely Distributed in Other S. Enterica Serovars." Journal of Bacteriology, vol. 187, no. 13, 2005, pp. 4401-4409., doi:10.1128/jb.187.13.4401-4409.2005.', '15968049', '', '', '', '', '']
146 gi:145 strain:None seq:None source:145 associated
147 gi:146 strain:67 seq:128 source:146 associated
148 gi:147 strain:68 seq:None source:147 associated
149 gi:148 strain:68 seq:None source:148 associated
150 No strain name, skipping strain ['SGI1-N', '', 'Unspecified', '', '', '', '', '', '', '', 'Levings, R. S., et al. "SGI1-K, a Variant of the SGI1 Genomic Island Carrying a Mercury Resistance Region, in Salmonella Enterica Serovar Kentucky." Antimicrobial Agents and Chemotherapy, vol. 51, no. 1, 2006, pp. 317-323., doi:10.1128/aac.01229-06.', '17088481', '', '', '', '', '']
150 gi:149 strain:None seq:None source:149 associated
151 No strain name, skipping strain ['SGI1-O', '', 'Contains the dfrA1 and sul1 genes, conferring resistance to trimethoprim and sulphonamides', '', '', '', '', '', '', '', 'Boyd, D. A., et al. "Salmonella Genomic Island 1 (SGI1), Variant SGI1-I, and New Variant SGI1-O in Proteus Mirabilis Clinical and Food Isolates from China." Antimicrobial Agents and Chemotherapy, vol. 52, no. 1, 2007, pp. 340-344., doi:10.1128/aac.00902-07.', '18025121', '', '', '', '', '']
151 gi:150 strain:None seq:None source:150 associated
152 No strain name, skipping strain ['SGI1-P', '', 'Contains the IS1359 insertion sequence element (also called ISVch4), suspected of conferring multidrug resistance', '', '', '', '', '', '', '', 'Doublet, B., et al. "Novel Insertion Sequence- and Transposon-Mediated Genetic Rearrangements in Genomic Island SGI1 of Salmonella Enterica Serovar Kentucky." Antimicrobial Agents and Chemotherapy, vol. 52, no. 10, 2008, pp. 3745-3754., doi:10.1128/aac.00525-08.', '18676889', '', '', '', '', '']
152 gi:151 strain:None seq:None source:151 associated
153 No strain name, skipping strain ['SGI1-Q', '', 'An IS26 element is inserted in place of the MDR region of SGI1, leads to a higher diversity of multi-drug resistant phenotypes.', '', '', '', '', '', '', '', 'Doublet, B., et al. "Novel Insertion Sequence- and Transposon-Mediated Genetic Rearrangements in Genomic Island SGI1 of Salmonella Enterica Serovar Kentucky." Antimicrobial Agents and Chemotherapy, vol. 52, no. 10, 2008, pp. 3745-3754., doi:10.1128/aac.00525-08.', '18676889', '', '', '', '', '']
153 gi:152 strain:None seq:None source:152 associated
154 No strain name, skipping strain ['SGI1-R', '', 'Unspecified', '', '', '', '', '', '', '', 'Djordjevic, S. P., et al. "Emergence and Evolution of Multiply Antibiotic-Resistant Salmonella Enterica Serovar Paratyphi B D-Tartrate-Utilizing Strains Containing SGI1." Antimicrobial Agents and Chemotherapy, vol. 53, no. 6, 2009, pp. 2319-2326., doi:10.1128/aac.01532-08.', '19332668', '', '', '', '', '']
154 gi:153 strain:None seq:None source:153 associated
155 gi:154 strain:69 seq:None source:154 associated
156 gi:155 strain:70 seq:129 source:155 associated
157 No strain name, skipping strain ['SGI1-U', '', 'Unspecified', '', '', '', '', '', '', '', 'Bi, Shuilian, et al. "New Variant Salmonella Genomic Island 1-U in Proteus Mirabilis Clinical and Food Isolates from South China." Journal of Antimicrobial Chemotherapy, vol. 66, no. 5, 2011, pp. 1178-1179., doi:10.1093/jac/dkr030.', '21393148', '', '', '', '', '']
157 gi:156 strain:None seq:None source:156 associated
158 No strain name, skipping strain ['SGI1-V', '', 'Encodes for resistance to quinolones', '', '', '', '', '42.9', '', '', 'Siebor, Eliane, and Catherine Neuwirth. "The New Variant of Salmonella Genomic Island 1 (SGI1-V) from a Proteus Mirabilis French Clinical Isolate Harbours BlaVEB-6 and qnrA1 in the Multiple Antibiotic Resistance Region." Journal of Antimicrobial Chemotherapy, vol. 66, no. 11, 2011, pp. 2513-2520., doi:10.1093/jac/dkr335.', '21846670', '', '', '', '', '']
158 gi:157 strain:None seq:130 source:157 associated
159 No strain name, skipping strain ['SGI1-W', '', 'Confers resistance to spectinomycin, streptomycin, and lincosamides', '', '', '', '', '43', '', '', 'Soliman, Ahmed M., et al. "First Report in Africa of Two Clinical Isolates of Proteus Mirabilis Carrying Salmonella Genomic Island (SGI1) Variants, SGI1- Pm ABB and SGI1-W." Infection, Genetics and Evolution, vol. 51, 2017, pp. 132-137., doi:10.1016/j.meegid.2017.03.029.', '28359833', '', '', '', '', '']
159 gi:158 strain:None seq:131 source:158 associated
160 No strain name, skipping strain ['SGI1-X', '', 'Contains the dfrA25 gene cassette, common region 1 (CR1), and fluoroquinolone resistance gene qnrB2', '', '', '', '', '11', '', '', 'Lei, Chang-Wei, et al. "Molecular Characteristics of Salmonella Genomic Island 1 in Proteus Mirabilis Isolates from Poultry Farms in China." Antimicrobial Agents and Chemotherapy, vol. 58, no. 12, 2014, pp. 7570-7572., doi:10.1128/aac.03992-14.', '25267683', '', '', '', '', '']
160 gi:159 strain:None seq:132 source:159 associated
161 No strain name, skipping strain ['SGI1-Y', '', 'Contains the aacCA5-aadA7 gene cassette, hypothesized to play a similar role to SGI1-B', '', '', '', '', '', '', '', 'Lei, Chang-Wei, et al. "Molecular Characteristics of Salmonella Genomic Island 1 in Proteus Mirabilis Isolates from Poultry Farms in China." Antimicrobial Agents and Chemotherapy, vol. 58, no. 12, 2014, pp. 7570-7572., doi:10.1128/aac.03992-14.', '25267683', '', '', '', '', '']
161 gi:160 strain:None seq:None source:160 associated
162 No strain name, skipping strain ['SGI1-Z', '', 'Contains a dfrA12-orfF-aadA2 cassette array conferring resistance to trimethoprim, spectinomycin, and streptomycin', '', '', '', '', '34.1', '', '', 'Lei, Chang-Wei, et al. "Molecular Characteristics of Salmonella Genomic Island 1 in Proteus Mirabilis Isolates from Poultry Farms in China." Antimicrobial Agents and Chemotherapy, vol. 58, no. 12, 2014, pp. 7570-7572., doi:10.1128/aac.03992-14. ; Qin, Shangshang, et al. "Emergence of Extensively Drug-Resistant Proteus Mirabilis Harboring a Conjugative NDM-1 Plasmid and a Novel Salmonella Genomic Island 1 Variant, SGI1-Z." Antimicrobial Agents and Chemotherapy, vol. 59, no. 10, 2015, pp. 6601-6604., doi:10.1128/aac.00292-15.', '25267683 ; 26195511', '', '', '', '', '']
162 gi:161 strain:None seq:133 source:161 associated
163 No strain name, skipping strain ['SGI-1-Pm2CHAMA', '', 'Acquired resistance to penicillins, spectinomycin, streptomycin, sulphonamides and trimethoprim', '', '', '', 'MF372716.1', '', '', '', 'Curraize, Claire De, et al. "Two New Salmonella Genomic Islands 1 from Proteus Mirabilis and Description of BlaCTX-M-15 on a Variant (SGI1-K7)." Journal of Antimicrobial Chemotherapy, 2018, doi:10.1093/jac/dky108.', '29659873', '', 'MF372716.1.fasta', '', '', '']
163 gi:162 strain:None seq:134 source:162 associated
164 No strain name, skipping strain ['SGI-2', '', 'An independently formed relative of Salmonella genomic island SGI1.; Differences are in the cassette arrays and in the gene which encodes the chloramphenicol and florfenicol efflux protein.', '', '', '', 'AY963803.6', '', '', '', 'Levings, R. S., et al. "SGI2, a Relative of Salmonella Genomic Island SGI1 with an Independent Origin." Antimicrobial Agents and Chemotherapy, vol. 52, no. 7, 2008, pp. 2529-2537., doi:10.1128/aac.00189-08.', '18443113', '', 'AY963803.6.fasta', '', '', '']
164 gi:163 strain:None seq:135 source:163 associated
165 gi:164 strain:71 seq:136 source:164 associated
166 gi:165 strain:72 seq:137 source:165 associated
167 gi:166 strain:73 seq:138 source:166 associated
168 gi:167 strain:74 seq:139 source:167 associated
169 gi:168 strain:75 seq:140 source:168 associated
170 gi:169 strain:76 seq:141 source:169 associated
171 gi:170 strain:72 seq:142 source:170 associated
172 gi:171 strain:72 seq:143 source:171 associated
173 gi:172 strain:77 seq:144 source:172 associated
174 gi:173 strain:78 seq:145 source:173 associated
175 CP040686.1 Accession associated with non-strain taxa 440524 'no rank', keeping Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain USDA15WA-1
175 gi:174 strain:79 seq:146 source:174 associated
176 gi:175 strain:74 seq:147 source:175 associated
177 gi:176 strain:80 seq:148 source:176 associated
178 gi:177 strain:75 seq:149 source:177 associated
179 gi:178 strain:81 seq:150 source:178 associated
180 gi:179 strain:82 seq:151 source:179 associated
181 gi:180 strain:76 seq:152 source:180 associated
182 gi:181 strain:83 seq:153 source:181 associated
183 gi:182 strain:84 seq:154 source:182 associated
184 gi:183 strain:85 seq:155 source:183 associated
185 gi:184 strain:86 seq:None source:184 associated
186 gi:185 strain:86 seq:None source:185 associated
187 gi:186 strain:86 seq:None source:186 associated
188 gi:187 strain:86 seq:None source:187 associated
189 gi:188 strain:86 seq:156 source:188 associated
190 gi:189 strain:86 seq:None source:189 associated
191 gi:190 strain:86 seq:None source:190 associated
192 gi:191 strain:87 seq:157 source:191 associated
193 gi:192 strain:87 seq:158 source:192 associated
194 gi:193 strain:87 seq:159 source:193 associated
195 gi:194 strain:88 seq:160 source:194 associated
196 gi:195 strain:87 seq:161 source:195 associated
197 gi:196 strain:87 seq:162 source:196 associated
198 gi:197 strain:87 seq:163 source:197 associated
199 gi:198 strain:87 seq:164 source:198 associated
200 gi:199 strain:87 seq:165 source:199 associated
201 gi:200 strain:87 seq:166 source:200 associated
202 gi:201 strain:87 seq:167 source:201 associated
203 gi:202 strain:87 seq:168 source:202 associated
204 gi:203 strain:87 seq:169 source:203 associated
205 gi:204 strain:87 seq:170 source:204 associated
206 No strain name, skipping strain ['SHI-0', '', '', '', '', '', '', '', '', '', 'Nie, Huan, et al. "Complete Genome Sequence of Shigella Flexneri 5b and Comparison with Shigella Flexneri 2a." BMC Genomics, vol. 7, no. 1, 6 July 2006, p. 173., doi:10.1186/1471-2164-7-173.', '16822325', '', '', '', '', '']
206 gi:205 strain:None seq:None source:205 associated
207 AE005674.2 Provided strain name (Shigella flexneri 2a strain 301) replaced with NCBI strain name (Shigella flexneri 2a str. 301)
207 gi:206 strain:89 seq:171 source:206 associated
208 AE005674.2 Provided strain name (Shigella flexneri 2a strain 301) replaced with NCBI strain name (Shigella flexneri 2a str. 301)
208 gi:207 strain:89 seq:172 source:207 associated
209 gi:208 strain:90 seq:173 source:208 associated
210 gi:209 strain:91 seq:174 source:209 associated
211 gi:210 strain:92 seq:175 source:210 associated
212 gi:211 strain:92 seq:176 source:211 associated
213 gi:212 strain:93 seq:177 source:212 associated
214 gi:213 strain:92 seq:178 source:213 associated
215 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
215 gi:214 strain:94 seq:None source:214 associated
216 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
216 gi:215 strain:94 seq:None source:215 associated
217 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
217 gi:216 strain:94 seq:None source:216 associated
218 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
218 gi:217 strain:94 seq:None source:217 associated
219 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
219 gi:218 strain:94 seq:179 source:218 associated
220 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
220 gi:219 strain:94 seq:None source:219 associated
221 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
221 gi:220 strain:94 seq:180 source:220 associated
222 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
222 gi:221 strain:94 seq:181 source:221 associated
223 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
223 gi:222 strain:94 seq:182 source:222 associated
224 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
224 gi:223 strain:94 seq:None source:223 associated
225 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
225 gi:224 strain:94 seq:None source:224 associated
226 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
226 gi:225 strain:94 seq:None source:225 associated
227 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
227 gi:226 strain:94 seq:None source:226 associated
228 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
228 gi:227 strain:94 seq:183 source:227 associated
229 BA000033.2 Provided strain name (Staphylococcus aureus subspecies aureus strain MW2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
229 gi:228 strain:94 seq:184 source:228 associated
230 gi:229 strain:95 seq:185 source:229 associated
231 gi:230 strain:96 seq:186 source:230 associated
232 gi:231 strain:97 seq:187 source:231 associated
233 gi:232 strain:98 seq:188 source:232 associated
234 gi:233 strain:99 seq:189 source:233 associated
235 gi:234 strain:100 seq:190 source:234 associated
236 gi:235 strain:101 seq:191 source:235 associated
237 gi:236 strain:102 seq:192 source:236 associated
238 gi:237 strain:103 seq:193 source:237 associated
239 gi:238 strain:104 seq:194 source:238 associated
240 gi:239 strain:103 seq:195 source:239 associated
241 gi:240 strain:105 seq:196 source:240 associated
242 gi:241 strain:106 seq:197 source:241 associated
243 gi:242 strain:107 seq:198 source:242 associated
244 No strain name, skipping strain ['SaRIfusB', '', '', '29.9', '', '', '', '16.7', '', '', 'O\'neill, A. J., et al. "Characterization of the Epidemic European Fusidic Acid-Resistant Impetigo Clone of Staphylococcus Aureus." Journal of Clinical Microbiology, vol. 45, no. 5, 2007, pp. 1505-1510., doi:10.1128/jcm.01984-06. ; Subedi, A., et al. "Sequence Analysis Reveals Genetic Exchanges and Intraspecific Spread of SaPI2, a Pathogenicity Island Involved in Menstrual Toxic Shock." Microbiology, vol. 153, no. 10, 2007, pp. 3235-3245., doi:10.1099/mic.0.2007/006932-0.', '17344365 ; 17906123', '', '', '', '', '']
244 gi:243 strain:None seq:199 source:243 associated
245 NC_000964.1 Provided strain name (bsub) replaced with NCBI strain name (Bacillus subtilis subsp. subtilis str. 168)
245 gi:244 strain:108 seq:200 source:244 associated
246 NC_000964.1 Provided strain name (bsub) replaced with NCBI strain name (Bacillus subtilis subsp. subtilis str. 168)
246 gi:245 strain:108 seq:201 source:245 associated
247 NC_000964.1 Provided strain name (bsub) replaced with NCBI strain name (Bacillus subtilis subsp. subtilis str. 168)
247 gi:246 strain:108 seq:202 source:246 associated
248 NC_000913.1 Provided strain name (ecoli) replaced with NCBI strain name (Escherichia coli K-12)
248 gi:247 strain:109 seq:203 source:247 associated
249 NC_000913.1 Provided strain name (ecoli) replaced with NCBI strain name (Escherichia coli K-12)
249 gi:248 strain:109 seq:204 source:248 associated
250 NC_000913.1 Provided strain name (ecoli) replaced with NCBI strain name (Escherichia coli K-12)
250 gi:249 strain:109 seq:205 source:249 associated
251 NC_000913.1 Provided strain name (ecoli) replaced with NCBI strain name (Escherichia coli K-12)
251 gi:250 strain:109 seq:206 source:250 associated
252 discarding gi type pathogenicity_island
252 gi:251 strain:110 seq:207 source:251 associated
253 discarding gi type pai
253 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
253 gi:252 strain:111 seq:208 source:252 associated
254 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
254 gi:253 strain:111 seq:209 source:253 associated
255 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
255 gi:254 strain:111 seq:210 source:254 associated
256 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
256 gi:255 strain:111 seq:211 source:255 associated
257 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
257 gi:256 strain:111 seq:212 source:256 associated
258 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
258 gi:257 strain:111 seq:213 source:257 associated
259 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
259 gi:258 strain:111 seq:214 source:258 associated
260 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
260 gi:259 strain:111 seq:215 source:259 associated
261 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
261 gi:260 strain:111 seq:216 source:260 associated
262 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
262 gi:261 strain:111 seq:217 source:261 associated
263 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
263 gi:262 strain:111 seq:218 source:262 associated
264 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
264 gi:263 strain:111 seq:219 source:263 associated
265 NC_002655.1 Provided strain name (ecoli_O157) replaced with NCBI strain name (Escherichia coli O157:H7 str. EDL933)
265 gi:264 strain:111 seq:220 source:264 associated
266 discarding gi type pai
266 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
266 gi:265 strain:112 seq:221 source:265 associated
267 discarding gi type pai
267 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
267 gi:266 strain:112 seq:222 source:266 associated
268 discarding gi type pai
268 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
268 gi:267 strain:112 seq:223 source:267 associated
269 discarding gi type pai
269 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
269 gi:268 strain:112 seq:224 source:268 associated
270 discarding gi type pai
270 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
270 gi:269 strain:112 seq:225 source:269 associated
271 discarding gi type pai
271 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
271 gi:270 strain:112 seq:226 source:270 associated
272 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
272 gi:271 strain:112 seq:227 source:271 associated
273 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
273 gi:272 strain:112 seq:228 source:272 associated
274 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
274 gi:273 strain:112 seq:229 source:273 associated
275 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
275 gi:274 strain:112 seq:230 source:274 associated
276 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
276 gi:275 strain:112 seq:231 source:275 associated
277 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
277 gi:276 strain:112 seq:232 source:276 associated
278 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
278 gi:277 strain:112 seq:233 source:277 associated
279 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
279 gi:278 strain:112 seq:234 source:278 associated
280 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
280 gi:279 strain:112 seq:235 source:279 associated
281 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
281 gi:280 strain:112 seq:236 source:280 associated
282 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
282 gi:281 strain:112 seq:237 source:281 associated
283 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
283 gi:282 strain:112 seq:238 source:282 associated
284 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
284 gi:283 strain:112 seq:239 source:283 associated
285 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
285 gi:284 strain:112 seq:240 source:284 associated
286 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
286 gi:285 strain:112 seq:241 source:285 associated
287 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
287 gi:286 strain:112 seq:242 source:286 associated
288 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
288 gi:287 strain:112 seq:243 source:287 associated
289 NC_002695.1 Provided strain name (ecoli_O157n) replaced with NCBI strain name (Escherichia coli O157:H7 str. Sakai)
289 gi:288 strain:112 seq:244 source:288 associated
290 discarding gi type pai
290 NC_000915.1 Provided strain name (hpyl) replaced with NCBI strain name (Helicobacter pylori 26695)
290 gi:289 strain:113 seq:245 source:289 associated
291 discarding gi type pai
291 NC_000921.1 Provided strain name (hpyl99) replaced with NCBI strain name (Helicobacter pylori J99)
291 gi:290 strain:114 seq:246 source:290 associated
292 gi:291 strain:51 seq:247 source:291 associated
293 discarding gi type pai
293 NC_003210.1 Provided strain name (Listeria monocytogenes) replaced with NCBI strain name (Listeria monocytogenes EGD-e)
293 gi:292 strain:50 seq:248 source:292 associated
294 NC_003485.1 Provided strain name (spyoMGAS) replaced with NCBI strain name (Streptococcus pyogenes MGAS8232)
294 gi:293 strain:115 seq:249 source:293 associated
295 NC_003485.1 Provided strain name (spyoMGAS) replaced with NCBI strain name (Streptococcus pyogenes MGAS8232)
295 gi:294 strain:115 seq:250 source:294 associated
296 NC_003485.1 Provided strain name (spyoMGAS) replaced with NCBI strain name (Streptococcus pyogenes MGAS8232)
296 gi:295 strain:115 seq:251 source:295 associated
297 NC_003485.1 Provided strain name (spyoMGAS) replaced with NCBI strain name (Streptococcus pyogenes MGAS8232)
297 gi:296 strain:115 seq:252 source:296 associated
298 NC_003485.1 Provided strain name (spyoMGAS) replaced with NCBI strain name (Streptococcus pyogenes MGAS8232)
298 gi:297 strain:115 seq:253 source:297 associated
299 discarding gi type pai
299 NC_002758.1 Provided strain name (staaur_mu50) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus Mu50)
299 gi:298 strain:116 seq:254 source:298 associated
300 discarding gi type pai
300 NC_002758.1 Provided strain name (staaur_mu50) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus Mu50)
300 gi:299 strain:116 seq:255 source:299 associated
301 discarding gi type pai
301 NC_002758.1 Provided strain name (staaur_mu50) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus Mu50)
301 gi:300 strain:116 seq:256 source:300 associated
302 discarding gi type pai
302 NC_002758.1 Provided strain name (staaur_mu50) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus Mu50)
302 gi:301 strain:116 seq:257 source:301 associated
303 discarding gi type pai
303 NC_002758.1 Provided strain name (staaur_mu50) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus Mu50)
303 gi:302 strain:116 seq:258 source:302 associated
304 NC_002758.1 Provided strain name (staaur_mu50) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus Mu50)
304 gi:303 strain:116 seq:259 source:303 associated
305 NC_002758.1 Provided strain name (staaur_mu50) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus Mu50)
305 gi:304 strain:116 seq:260 source:304 associated
306 discarding gi type pai
306 NC_002745.1 Provided strain name (staaur_n314) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus N315)
306 gi:305 strain:117 seq:261 source:305 associated
307 discarding gi type pai
307 NC_002745.1 Provided strain name (staaur_n315) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus N315)
307 publications: duplicate (129, 'Novick, Richard P., et al. "Pathogenicity and Resistance Islands of Staphylococci." Microbes and Infection, vol. 3, no. 7, 2001, pp. 585-594., doi:10.1016/s1286-4579(01)01414-9.', '10.1016/s1286-4579(01)01414-9')
307 publications: discarding ('https://doi.org/10.1016/s1286-4579(01)01414-9', '10.1016/s1286-4579(01)01414-9')
307 gi:306 strain:117 seq:262 source:306 associated
308 discarding gi type pai
308 NC_002745.1 Provided strain name (staaur_n315) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus N315)
308 publications: duplicate (129, 'Novick, Richard P., et al. "Pathogenicity and Resistance Islands of Staphylococci." Microbes and Infection, vol. 3, no. 7, 2001, pp. 585-594., doi:10.1016/s1286-4579(01)01414-9.', '10.1016/s1286-4579(01)01414-9')
308 publications: discarding ('https://doi.org/10.1016/s1286-4579(01)01414-9', '10.1016/s1286-4579(01)01414-9')
308 gi:307 strain:117 seq:263 source:307 associated
309 discarding gi type pai
309 NC_002745.1 Provided strain name (staaur_n315) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus N315)
309 publications: duplicate (129, 'Novick, Richard P., et al. "Pathogenicity and Resistance Islands of Staphylococci." Microbes and Infection, vol. 3, no. 7, 2001, pp. 585-594., doi:10.1016/s1286-4579(01)01414-9.', '10.1016/s1286-4579(01)01414-9')
309 publications: discarding ('https://doi.org/10.1016/s1286-4579(01)01414-9', '10.1016/s1286-4579(01)01414-9')
309 gi:308 strain:117 seq:264 source:308 associated
310 NC_002745.1 Provided strain name (staaur_n315) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus N315)
310 gi:309 strain:117 seq:265 source:309 associated
311 discarding gi type pai
311 NC_003923.1 Provided strain name (staaurmw2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
311 gi:310 strain:118 seq:266 source:310 associated
312 discarding gi type pai
312 NC_003923.1 Provided strain name (staaurmw2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
312 publications: duplicate (129, 'Novick, Richard P., et al. "Pathogenicity and Resistance Islands of Staphylococci." Microbes and Infection, vol. 3, no. 7, 2001, pp. 585-594., doi:10.1016/s1286-4579(01)01414-9.', '10.1016/s1286-4579(01)01414-9')
312 publications: discarding ('https://doi.org/10.1016/s1286-4579(01)01414-9', '10.1016/s1286-4579(01)01414-9')
312 gi:311 strain:118 seq:267 source:311 associated
313 NC_003923.1 Provided strain name (staaurmw2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
313 gi:312 strain:118 seq:268 source:312 associated
314 NC_003923.1 Provided strain name (staaurmw2) replaced with NCBI strain name (Staphylococcus aureus subsp. aureus MW2)
314 gi:313 strain:118 seq:269 source:313 associated
315 NC_004116.1 Provided strain name (strepaga) replaced with NCBI strain name (Streptococcus agalactiae 2603V/R)
315 gi:314 strain:119 seq:270 source:314 associated
316 NC_004116.1 Provided strain name (strepaga) replaced with NCBI strain name (Streptococcus agalactiae 2603V/R)
316 gi:315 strain:119 seq:271 source:315 associated
317 discarding gi type pai
317 NC_003098.1 Provided strain name (strepneu_r6) replaced with NCBI strain name (Streptococcus pneumoniae R6)
317 gi:316 strain:120 seq:272 source:316 associated
318 discarding gi type pai
318 NC_003028.1 Provided strain name (strepneu_tigr4) replaced with NCBI strain name (Streptococcus pneumoniae TIGR4)
318 gi:317 strain:121 seq:273 source:317 associated
319 NC_002737.1 Provided strain name (streppyo) replaced with NCBI strain name (Streptococcus pyogenes M1 GAS)
319 gi:318 strain:122 seq:274 source:318 associated
320 NC_002737.1 Provided strain name (streppyo) replaced with NCBI strain name (Streptococcus pyogenes M1 GAS)
320 gi:319 strain:122 seq:275 source:319 associated
321 NC_002737.1 Provided strain name (streppyo) replaced with NCBI strain name (Streptococcus pyogenes M1 GAS)
321 gi:320 strain:122 seq:276 source:320 associated
322 NC_002737.1 Provided strain name (streppyo) replaced with NCBI strain name (Streptococcus pyogenes M1 GAS)
322 gi:321 strain:122 seq:277 source:321 associated
323 NC_004070.1 Provided strain name (streppyo315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
323 gi:322 strain:123 seq:278 source:322 associated
324 NC_004070.1 Provided strain name (streppyo315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
324 gi:323 strain:123 seq:279 source:323 associated
325 NC_004070.1 Provided strain name (streppyo315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
325 gi:324 strain:123 seq:280 source:324 associated
326 NC_004070.1 Provided strain name (streppyo315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
326 gi:325 strain:123 seq:281 source:325 associated
327 NC_004070.1 Provided strain name (streppyo315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
327 gi:326 strain:123 seq:282 source:326 associated
328 NC_004070.1 Provided strain name (streppyo315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
328 gi:327 strain:123 seq:283 source:327 associated
329 discarding gi type pai
329 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
329 gi:328 strain:124 seq:284 source:328 associated
330 discarding gi type pai
330 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
330 gi:329 strain:124 seq:285 source:329 associated
331 discarding gi type pai
331 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
331 publications: duplicate (71, 'Blanc-Potard AB, et al., 1999. "The SPI-3 pathogenicity island of Salmonella enterica." J. Bacteriol. 181(3):998-1004. doi: 10.1128/JB.181.3.998-1004.1999', '10.1128/JB.181.3.998-1004.1999')
331 publications: discarding ('https://doi.org/10.1128/JB.181.3.998-1004.1999', '10.1128/JB.181.3.998-1004.1999')
331 gi:330 strain:124 seq:286 source:330 associated
332 discarding gi type pai
332 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
332 gi:331 strain:124 seq:287 source:331 associated
333 discarding gi type pai
333 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
333 gi:332 strain:124 seq:288 source:332 associated
334 discarding gi type pai
334 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
334 gi:333 strain:124 seq:289 source:333 associated
335 discarding gi type pai
335 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
335 publications: duplicate (79, 'Pickard, D., et al. "Composition, Acquisition, and Distribution of the Vi Exopolysaccharide-Encoding Salmonella Enterica Pathogenicity Island SPI-7." Journal of Bacteriology, vol. 185, no. 17, 2003, pp. 5055-5065., doi:10.1128/jb.185.17.5055-5065.2003.', '10.1128/jb.185.17.5055-5065.2003')
335 publications: discarding ('https://doi.org/10.1128/jb.185.17.5055-5065.2003', '10.1128/jb.185.17.5055-5065.2003')
335 gi:334 strain:124 seq:290 source:334 associated
336 discarding gi type pai
336 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
336 gi:335 strain:124 seq:291 source:335 associated
337 discarding gi type pai
337 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
337 gi:336 strain:124 seq:292 source:336 associated
338 discarding gi type pai
338 NC_003198.1 Provided strain name (styphi) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhi str. CT18)
338 gi:337 strain:124 seq:293 source:337 associated
339 discarding gi type pai
339 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
339 gi:338 strain:125 seq:294 source:338 associated
340 discarding gi type pai
340 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
340 gi:339 strain:125 seq:295 source:339 associated
341 discarding gi type pai
341 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
341 publications: duplicate (71, 'Blanc-Potard AB, et al., 1999. "The SPI-3 pathogenicity island of Salmonella enterica." J. Bacteriol. 181(3):998-1004. doi: 10.1128/JB.181.3.998-1004.1999', '10.1128/JB.181.3.998-1004.1999')
341 publications: discarding ('https://doi.org/10.1128/JB.181.3.998-1004.1999', '10.1128/JB.181.3.998-1004.1999')
341 gi:340 strain:125 seq:296 source:340 associated
342 discarding gi type pai
342 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
342 gi:341 strain:125 seq:297 source:341 associated
343 discarding gi type pai
343 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
343 gi:342 strain:125 seq:298 source:342 associated
344 discarding gi type pai
344 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
344 gi:343 strain:125 seq:299 source:343 associated
345 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
345 gi:344 strain:125 seq:300 source:344 associated
346 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
346 gi:345 strain:125 seq:301 source:345 associated
347 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
347 gi:346 strain:125 seq:302 source:346 associated
348 NC_003197.1 Provided strain name (styphium) replaced with NCBI strain name (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
348 gi:347 strain:125 seq:303 source:347 associated
349 discarding gi type pai
349 NC_002505.1 Provided strain name (vcho1) replaced with NCBI strain name (Vibrio cholerae O1 biovar El Tor str. N16961)
349 gi:348 strain:126 seq:304 source:348 associated
350 discarding gi type pai
350 NC_002505.1 Provided strain name (vcho1) replaced with NCBI strain name (Vibrio cholerae O1 biovar El Tor str. N16961)
350 gi:349 strain:126 seq:305 source:349 associated
351 discarding gi type pai
351 NC_004088.1 Provided strain name (yerpk) replaced with NCBI strain name (Yersinia pestis KIM10+)
351 gi:350 strain:127 seq:306 source:350 associated
352 discarding gi type pai
352 NC_004088.1 Provided strain name (yerpk) replaced with NCBI strain name (Yersinia pestis KIM10+)
352 gi:351 strain:127 seq:307 source:351 associated
353 discarding gi type pai
353 NC_003143.1 Provided strain name (ypest) replaced with NCBI strain name (Yersinia pestis CO92)
353 gi:352 strain:128 seq:308 source:352 associated
354 discarding gi type pai
354 NC_003143.1 Provided strain name (ypest) replaced with NCBI strain name (Yersinia pestis CO92)
354 gi:353 strain:128 seq:309 source:353 associated
355 discarding gi type pai
355 NC_003143.1 Provided strain name (ypest) replaced with NCBI strain name (Yersinia pestis CO92)
355 gi:354 strain:128 seq:310 source:354 associated
356 gi:355 strain:37 seq:None source:355 associated
357 gi:356 strain:129 seq:311 source:356 associated
358 gi:357 strain:130 seq:312 source:357 associated
359 HM134797.1 Accession associated with non-strain taxa 32630 'species', keeping Vibrio cholerae AL 33457
359 gi:358 strain:131 seq:313 source:358 associated
360 discarding gi type pai
360 CP028827.1 Accession associated with non-strain taxa 666 'species', keeping Vibrio cholerae N16961, chr1
360 gi:359 strain:31 seq:314 source:359 associated
361 discarding gi type pai
361 CP028827.1 Accession associated with non-strain taxa 666 'species', keeping Vibrio cholerae N16961, chr1
361 gi:360 strain:31 seq:315 source:360 associated
362 gi:361 strain:132 seq:316 source:361 associated
363 gi:362 strain:133 seq:317 source:362 associated
364 gi:363 strain:134 seq:318 source:363 associated
365 gi:364 strain:135 seq:319 source:364 associated
366 gi:365 strain:136 seq:320 source:365 associated
367 gi:366 strain:136 seq:321 source:366 associated
368 gi:367 strain:137 seq:322 source:367 associated
369 gi:368 strain:138 seq:323 source:368 associated
370 gi:369 strain:139 seq:324 source:369 associated
371 gi:370 strain:140 seq:325 source:370 associated
372 gi:371 strain:141 seq:326 source:371 associated
373 gi:372 strain:142 seq:327 source:372 associated
374 AE014133.2 Provided strain name (S. mutans UA159) replaced with NCBI strain name (Streptococcus mutans UA159)
374 gi:373 strain:143 seq:328 source:373 associated
375 AAJR00000000.1 Provided strain name (S. agalactiae COH1) replaced with NCBI strain name (Streptococcus agalactiae COH1)
375 gi:374 strain:144 seq:329 source:374 associated
376 discarding gi type pai
376 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
376 gi:375 strain:145 seq:None source:375 associated
377 discarding gi type pai
377 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
377 gi:376 strain:145 seq:None source:376 associated
378 discarding gi type pai
378 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
378 gi:377 strain:145 seq:None source:377 associated
379 discarding gi type pai
379 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
379 gi:378 strain:145 seq:None source:378 associated
380 discarding gi type pai
380 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
380 gi:379 strain:145 seq:None source:379 associated
381 discarding gi type pai
381 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
381 gi:380 strain:145 seq:None source:380 associated
382 discarding gi type pai
382 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
382 gi:381 strain:145 seq:None source:381 associated
383 discarding gi type pai
383 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
383 gi:382 strain:145 seq:None source:382 associated
384 discarding gi type pai
384 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
384 gi:383 strain:145 seq:None source:383 associated
385 discarding gi type pai
385 LIEE00000000.1 Accession associated with non-strain taxa 1311 'species', keeping S. agalactiae GBS90356
385 gi:384 strain:145 seq:None source:384 associated
386 gi:385 strain:146 seq:330 source:385 associated
387 gi:386 strain:147 seq:331 source:386 associated
388 gi:387 strain:148 seq:332 source:387 associated
389 CP003922.1 Provided strain name (S. suis SC070731) replaced with NCBI strain name (Streptococcus suis SC070731)
389 gi:388 strain:149 seq:333 source:388 associated
390 CP003922.1 Provided strain name (S. suis SC070731) replaced with NCBI strain name (Streptococcus suis SC070731)
390 gi:389 strain:149 seq:334 source:389 associated
391 CP003922.1 Provided strain name (S. suis SC070731) replaced with NCBI strain name (Streptococcus suis SC070731)
391 gi:390 strain:149 seq:335 source:390 associated
392 CP003922.1 Provided strain name (S. suis SC070731) replaced with NCBI strain name (Streptococcus suis SC070731)
392 gi:391 strain:149 seq:336 source:391 associated
393 discarding gi type pai
393 CP000407.1 Provided strain name (S. suis 05ZYH33) replaced with NCBI strain name (Streptococcus suis 05ZYH33)
393 gi:392 strain:150 seq:337 source:392 associated
394 AE009948.1 Provided strain name (S. agalactiae 2603 V/R) replaced with NCBI strain name (Streptococcus agalactiae 2603V/R)
394 gi:393 strain:151 seq:338 source:393 associated
395 AE009948.1 Provided strain name (S. agalactiae 2603 V/R) replaced with NCBI strain name (Streptococcus agalactiae 2603V/R)
395 gi:394 strain:151 seq:339 source:394 associated
396 discarding gi type putative_pai
396 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
396 gi:395 strain:152 seq:340 source:395 associated
397 discarding gi type putative_pai
397 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
397 gi:396 strain:152 seq:341 source:396 associated
398 discarding gi type putative_pai
398 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
398 gi:397 strain:152 seq:342 source:397 associated
399 discarding gi type putative_pai
399 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
399 gi:398 strain:152 seq:343 source:398 associated
400 discarding gi type putative_pai
400 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
400 gi:399 strain:152 seq:344 source:399 associated
401 discarding gi type putative_pai
401 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
401 gi:400 strain:152 seq:345 source:400 associated
402 discarding gi type putative_pai
402 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
402 gi:401 strain:152 seq:346 source:401 associated
403 discarding gi type putative_pai
403 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
403 gi:402 strain:152 seq:347 source:402 associated
404 discarding gi type putative_pai
404 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
404 gi:403 strain:152 seq:348 source:403 associated
405 discarding gi type putative_pai
405 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
405 gi:404 strain:152 seq:349 source:404 associated
406 discarding gi type putative_pai
406 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
406 gi:405 strain:152 seq:350 source:405 associated
407 discarding gi type putative_pai
407 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
407 gi:406 strain:152 seq:351 source:406 associated
408 discarding gi type putative_pai
408 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
408 gi:407 strain:152 seq:352 source:407 associated
409 discarding gi type putative_pai
409 AL732656.1 Provided strain name (S. agalactiae NEM316) replaced with NCBI strain name (Streptococcus agalactiae NEM316)
409 gi:408 strain:152 seq:353 source:408 associated
410 CP000056.1 Provided strain name (S. pyrogenes MGAS6180) replaced with NCBI strain name (Streptococcus pyogenes MGAS6180)
410 gi:409 strain:153 seq:354 source:409 associated
411 CP000056.1 Provided strain name (S. pyrogenes MGAS6180) replaced with NCBI strain name (Streptococcus pyogenes MGAS6180)
411 gi:410 strain:153 seq:355 source:410 associated
412 CP000056.1 Provided strain name (S. pyrogenes MGAS6180) replaced with NCBI strain name (Streptococcus pyogenes MGAS6180)
412 gi:411 strain:153 seq:356 source:411 associated
413 CP000056.1 Provided strain name (S. pyrogenes MGAS6180) replaced with NCBI strain name (Streptococcus pyogenes MGAS6180)
413 gi:412 strain:153 seq:357 source:412 associated
414 CP000056.1 Provided strain name (S. pyrogenes MGAS6180) replaced with NCBI strain name (Streptococcus pyogenes MGAS6180)
414 gi:413 strain:153 seq:358 source:413 associated
415 CP000056.1 Provided strain name (S. pyrogenes MGAS6180) replaced with NCBI strain name (Streptococcus pyogenes MGAS6180)
415 gi:414 strain:153 seq:359 source:414 associated
416 CM002372.1 Provided strain name (S. thermophilus M17PTZA496) replaced with NCBI strain name (Streptococcus thermophilus M17PTZA496)
416 gi:415 strain:154 seq:360 source:415 associated
417 CM002372.1 Provided strain name (S. thermophilus M17PTZA496) replaced with NCBI strain name (Streptococcus thermophilus M17PTZA496)
417 gi:416 strain:154 seq:361 source:416 associated
418 AE004092.2 Provided strain name (S. pyogenes SF370) replaced with NCBI strain name (Streptococcus pyogenes M1 GAS)
418 gi:417 strain:155 seq:362 source:417 associated
419 AE004092.2 Provided strain name (S. pyogenes SF370) replaced with NCBI strain name (Streptococcus pyogenes M1 GAS)
419 gi:418 strain:155 seq:363 source:418 associated
420 AE004092.2 Provided strain name (S. pyogenes SF370) replaced with NCBI strain name (Streptococcus pyogenes M1 GAS)
420 gi:419 strain:155 seq:364 source:419 associated
421 AE014074.1 Provided strain name (S. pyogenes MGAS315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
421 gi:420 strain:156 seq:365 source:420 associated
422 AE014074.1 Provided strain name (S. pyogenes MGAS315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
422 gi:421 strain:156 seq:366 source:421 associated
423 AE014074.1 Provided strain name (S. pyogenes MGAS315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
423 gi:422 strain:156 seq:367 source:422 associated
424 AE014074.1 Provided strain name (S. pyogenes MGAS315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
424 gi:423 strain:156 seq:368 source:423 associated
425 AE014074.1 Provided strain name (S. pyogenes MGAS315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
425 gi:424 strain:156 seq:369 source:424 associated
426 AE014074.1 Provided strain name (S. pyogenes MGAS315) replaced with NCBI strain name (Streptococcus pyogenes MGAS315)
426 gi:425 strain:156 seq:370 source:425 associated
427 discarding gi type resistance_island
427 CP000521.1 Provided strain name (A. baumannii ATCC 17978) replaced with NCBI strain name (Acinetobacter baumannii ATCC 17978)
427 gi:426 strain:157 seq:371 source:426 associated
428 discarding gi type resistance_island
428 gi:427 strain:158 seq:372 source:427 associated
429 discarding gi type resistance_island
429 CP003500.1 Provided strain name (A. baumannii MDR-TJ) replaced with NCBI strain name (Acinetobacter baumannii MDR-TJ)
429 gi:428 strain:159 seq:373 source:428 associated
430 discarding gi type resistance_island
430 ADGZ00000000.1 Provided strain name (A. baumannii AB056) replaced with NCBI strain name (Acinetobacter baumannii AB056)
430 gi:429 strain:160 seq:374 source:429 associated
431 discarding gi type resistance_island
431 ADHA00000000.1 Provided strain name (A. baumannii AB058) replaced with NCBI strain name (Acinetobacter baumannii AB058)
431 gi:430 strain:161 seq:None source:430 associated
432 discarding gi type resistance_island
432 JPHW00000000.1 Provided strain name (A. baumannii MRSN58) replaced with NCBI strain name (Acinetobacter baumannii MRSN 58)
432 gi:431 strain:162 seq:None source:431 associated
433 discarding gi type resistance_island
433 AMSZ00000000.1 Provided strain name (A. baumannii Canada BC1) replaced with NCBI strain name (Acinetobacter baumannii Canada BC1)
433 gi:432 strain:163 seq:None source:432 associated
434 discarding gi type resistance_island
434 gi:433 strain:164 seq:None source:433 associated
435 discarding gi type resistance_island
435 CP008706.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii AB5075-UW
435 gi:434 strain:165 seq:375 source:434 associated
436 discarding gi type resistance_island
436 gi:435 strain:166 seq:376 source:435 associated
437 discarding gi type resistance_island
437 gi:436 strain:167 seq:377 source:436 associated
438 discarding gi type resistance_island
438 gi:437 strain:168 seq:378 source:437 associated
439 discarding gi type resistance_island
439 gi:438 strain:169 seq:379 source:438 associated
440 discarding gi type resistance_island
440 gi:439 strain:170 seq:380 source:439 associated
441 discarding gi type resistance_island
441 gi:440 strain:171 seq:381 source:440 associated
442 discarding gi type resistance_island
442 gi:441 strain:172 seq:382 source:441 associated
443 discarding gi type resistance_island
443 gi:442 strain:173 seq:383 source:442 associated
444 discarding gi type resistance_island
444 gi:443 strain:174 seq:384 source:443 associated
445 discarding gi type resistance_island
445 GQ406245.5 Accession associated with non-strain taxa 470 'species', keeping A. baumannii D2
445 gi:444 strain:175 seq:385 source:444 associated
446 discarding gi type resistance_island
446 GQ406246.3 Accession associated with non-strain taxa 470 'species', keeping A. baumannii A92
446 gi:445 strain:176 seq:386 source:445 associated
447 discarding gi type resistance_island
447 HM590877.5 Accession associated with non-strain taxa 470 'species', keeping A. baumannii D13
447 gi:446 strain:177 seq:387 source:446 associated
448 discarding gi type resistance_island
448 CP001937.1 Provided strain name (A. baumannii MDR-ZJ06) replaced with NCBI strain name (Acinetobacter baumannii MDR-ZJ06)
448 gi:447 strain:178 seq:388 source:447 associated
449 discarding gi type resistance_island
449 CT025832.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii AYE
449 gi:448 strain:179 seq:389 source:448 associated
450 discarding gi type resistance_island
450 CP001182.2 Provided strain name (A. baumannii AB0057) replaced with NCBI strain name (Acinetobacter baumannii AB0057)
450 gi:449 strain:180 seq:390 source:449 associated
451 discarding gi type resistance_island
451 CP001182.2 Provided strain name (A. baumannii AB0057) replaced with NCBI strain name (Acinetobacter baumannii AB0057)
451 gi:450 strain:180 seq:391 source:450 associated
452 discarding gi type resistance_island
452 FJ172370.5 Accession associated with non-strain taxa 470 'species', keeping A. baumannii 3208
452 gi:451 strain:181 seq:392 source:451 associated
453 discarding gi type resistance_island
453 KM921776.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii A297
453 gi:452 strain:182 seq:393 source:452 associated
454 discarding gi type resistance_island
454 JN409449.3 Accession associated with non-strain taxa 470 'species', keeping A. baumannii D81
454 gi:453 strain:183 seq:394 source:453 associated
455 discarding gi type resistance_island
455 JN968482.3 Accession associated with non-strain taxa 470 'species', keeping A. baumannii A1
455 gi:454 strain:184 seq:395 source:454 associated
456 discarding gi type resistance_island
456 KC665626.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii D30
456 gi:455 strain:185 seq:396 source:455 associated
457 discarding gi type resistance_island
457 JN676148.1 Provided strain name (A. baumannii A424) replaced with NCBI strain name (Acinetobacter baumannii A424)
457 gi:456 strain:186 seq:397 source:456 associated
458 discarding gi type resistance_island
458 CP024418.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii A388
458 gi:457 strain:187 seq:398 source:457 associated
459 discarding gi type resistance_island
459 CP024418.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii A388
459 gi:458 strain:187 seq:399 source:458 associated
460 discarding gi type resistance_island
460 KF483599.2 Accession associated with non-strain taxa 470 'species', keeping A. baumannii WM98
460 gi:459 strain:188 seq:400 source:459 associated
461 discarding gi type resistance_island
461 gi:460 strain:164 seq:401 source:460 associated
462 discarding gi type resistance_island
462 gi:461 strain:189 seq:402 source:461 associated
463 gi:462 strain:190 seq:403 source:462 associated
464 APRG01000001.1 Provided strain name (A. baumannii ATCC 19606) replaced with NCBI strain name (Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841)
464 gi:463 strain:191 seq:404 source:463 associated
465 JN247441.4 Accession associated with non-strain taxa 470 'species', keeping A. baumannii RUH134
465 gi:464 strain:192 seq:405 source:464 associated
466 discarding gi type resistance_island
466 JN247441.4 Accession associated with non-strain taxa 470 'species', keeping A. baumannii RUH134
466 gi:465 strain:192 seq:406 source:465 associated
467 discarding gi type resistance_island
467 JN247441.4 Accession associated with non-strain taxa 470 'species', keeping A. baumannii RUH134
467 gi:466 strain:192 seq:407 source:466 associated
468 CP000521.1 Provided strain name (A. baumannii ATCC 17978) replaced with NCBI strain name (Acinetobacter baumannii ATCC 17978)
468 gi:467 strain:157 seq:408 source:467 associated
469 CP000521.1 Provided strain name (A. baumannii ATCC 17978) replaced with NCBI strain name (Acinetobacter baumannii ATCC 17978)
469 gi:468 strain:157 seq:409 source:468 associated
470 CP000521.1 Provided strain name (A. baumannii ATCC 17978) replaced with NCBI strain name (Acinetobacter baumannii ATCC 17978)
470 gi:469 strain:157 seq:410 source:469 associated
471 CT025833.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii SDF
471 gi:470 strain:193 seq:411 source:470 associated
472 CP045110.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii ATCC 19606
472 gi:471 strain:194 seq:412 source:471 associated
473 discarding gi type resistance_island
473 CP008706.1 Accession associated with non-strain taxa 470 'species', keeping A. baumannii AB5075-UW
473 gi:472 strain:165 seq:413 source:472 associated
474 gi:473 strain:195 seq:414 source:473 associated
475 gi:474 strain:196 seq:415 source:474 associated
476 gi:475 strain:197 seq:416 source:475 associated
477 No GI name, substituting 'cGI' ['', '', 'Contains antiobiotic resistance genes tet(44) and ant(6)-Ib', '', 'Campylobacter fetus fetus strain IMD523-06', '', 'FN594949.1', '39.175', ':1036', ':40210', 'Abril C, Brodard I, Perreten V. Two novel antibiotic resistance genes, tet(44) and ant(6)-Ib, are located within a transferable pathogenicity island in Campylobacter fetus subsp. fetus. Antimicrob Agents Chemother. 2010;54(7):3052-3055. doi:10.1128/AAC.00304-10', '', '', 'FN594949.1_1036_40210.fasta', '', '', '']
477 gi:476 strain:198 seq:417 source:476 associated
478 HG004426.1 Provided strain name (Campylobacter fetus venerealis strain 84-112) replaced with NCBI strain name (Campylobacter fetus subsp. venerealis str. 84-112)
478 gi:477 strain:199 seq:418 source:477 associated
479 HG004426.1 Provided strain name (Campylobacter fetus venerealis strain 84-112) replaced with NCBI strain name (Campylobacter fetus subsp. venerealis str. 84-112)
479 gi:478 strain:199 seq:419 source:478 associated
480 HG004426.1 Provided strain name (Campylobacter fetus venerealis strain 84-112) replaced with NCBI strain name (Campylobacter fetus subsp. venerealis str. 84-112)
480 gi:479 strain:199 seq:420 source:479 associated
481 HG004426.1 Provided strain name (Campylobacter fetus venerealis strain 84-112) replaced with NCBI strain name (Campylobacter fetus subsp. venerealis str. 84-112)
481 gi:480 strain:199 seq:421 source:480 associated
482 HG004426.1 Provided strain name (Campylobacter fetus venerealis strain 84-112) replaced with NCBI strain name (Campylobacter fetus subsp. venerealis str. 84-112)
482 gi:481 strain:199 seq:422 source:481 associated
483 HG004426.1 Provided strain name (Campylobacter fetus venerealis strain 84-112) replaced with NCBI strain name (Campylobacter fetus subsp. venerealis str. 84-112)
483 gi:482 strain:199 seq:423 source:482 associated
484 HG004426.1 Provided strain name (Campylobacter fetus venerealis strain 84-112) replaced with NCBI strain name (Campylobacter fetus subsp. venerealis str. 84-112)
484 gi:483 strain:199 seq:424 source:483 associated
485 CP000487.1 Provided strain name (Campylobacter fetus venerealis strain 82-40) replaced with NCBI strain name (Campylobacter fetus subsp. fetus 82-40)
485 gi:484 strain:200 seq:425 source:484 associated
486 CP000487.1 Provided strain name (Campylobacter fetus venerealis strain 82-40) replaced with NCBI strain name (Campylobacter fetus subsp. fetus 82-40)
486 gi:485 strain:200 seq:426 source:485 associated
487 CP000487.1 Provided strain name (Campylobacter fetus venerealis strain 82-40) replaced with NCBI strain name (Campylobacter fetus subsp. fetus 82-40)
487 gi:486 strain:200 seq:427 source:486 associated
488 CP060707.1 Accession associated with non-strain taxa 199 'species', keeping Campylobacter concisus P1CDO2
488 gi:487 strain:201 seq:428 source:487 associated
489 CP049263.1 Accession associated with non-strain taxa 199 'species', keeping Campylobacter concisus H16O-S1
489 gi:488 strain:202 seq:429 source:488 associated
490 publications: duplicate (2, 'Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531', '10.1111/j.1574-6968.2008.01406.x')
490 publications: discarding ('Battle SE, Rello J, Hauser AR. Genomic islands of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2009 Jan 290(1):70-8. doi: 10.1111/j.1574-6968.2008.01406.x. Epub 2008 Nov 18. PMID: 19025565 PMCID: PMC2648531.', '10.1111/j.1574-6968.2008.01406.x')
490 gi:489 strain:2 seq:430 source:489 associated
491 gi:490 strain:203 seq:431 source:490 associated
492 gi:491 strain:204 seq:432 source:491 associated
493 gi:492 strain:204 seq:433 source:492 associated
494 gi:493 strain:204 seq:434 source:493 associated
495 gi:494 strain:204 seq:435 source:494 associated
496 gi:495 strain:204 seq:436 source:495 associated
497 gi:496 strain:204 seq:437 source:496 associated
498 gi:497 strain:204 seq:438 source:497 associated
499 gi:498 strain:204 seq:439 source:498 associated
500 gi:499 strain:204 seq:440 source:499 associated
501 gi:500 strain:204 seq:441 source:500 associated
502 gi:501 strain:204 seq:442 source:501 associated
503 gi:502 strain:204 seq:443 source:502 associated
504 discarding gi type ice
504 AP019375.1 Accession associated with non-strain taxa 440524 'no rank', keeping Salmonella enterica subsp. enterica serovar 4,[5],12:i:- L-3841
504 gi:503 strain:205 seq:444 source:503 associated
Validating database...
sequence 12: has no associated path
sequence 73: has no associated path
sequence 79: has no associated path
sequence 89: has no associated path
sequence 124: has no associated path
sequence 126: has no associated path
sequence 127: has no associated path
sequence 129: has no associated path
sequence 130: has no associated path
sequence 131: has no associated path
sequence 132: has no associated path
sequence 133: has no associated path
sequence 136: has no associated path
sequence 137: has no associated path
sequence 138: has no associated path
sequence 139: has no associated path
sequence 140: has no associated path
sequence 141: has no associated path
sequence 142: has no associated path
sequence 143: has no associated path
sequence 144: has no associated path
sequence 145: has no associated path
sequence 147: has no associated path
sequence 148: has no associated path
sequence 149: has no associated path
sequence 150: has no associated path
sequence 151: has no associated path
sequence 152: has no associated path
sequence 153: has no associated path
sequence 154: has no associated path
sequence 155: has no associated path
sequence 156: has no associated path
sequence 177: has no associated path
sequence 185: has no associated path
sequence 186: has no associated path
sequence 187: has no associated path