Improve free text query performance

[korikuzma]

Specifically looking at protein free text queries (E.g. BRAF V600E) for the manuscript analysis. I ran for ~420s locally and could only normalize ~3 free text queries per second. I tried making some work in the draft PR in cool-seq-tool, but tests weren't passing (BRAF V600E and BRAF V512E did not return the same concept).

[jsstevenson]

(BRAF V600E and BRAF V512E did not return the same concept)

At some point I will need someone to explain to me, like they would explain to a 5 year old, why this is a bad thing

[github-actions]

This issue is stale because it has been open 90 days with no activity. This issue will be closed if no further activity occurs in 14 days.