diff --git a/migrate/maps.py b/migrate/maps.py new file mode 100644 index 0000000..b487998 --- /dev/null +++ b/migrate/maps.py @@ -0,0 +1,56 @@ +# Mapping our mods/name/role/roleTerms to Invenio roles +# ! NOTE cast terms to LOWERCASE before using this map. Our metadata is inconsistent between title case and lowercase. +# MODS (which uses MARC list): https://www.loc.gov/marc/relators/relaterm.html +# Invenio roles: https://github.com/inveniosoftware/invenio-rdm-records/blob/master/invenio_rdm_records/fixtures/data/vocabularies/roles.yaml +# contactperson, datacollector, datacurator, datamanager, distributor, editor, hostinginstitution, other, producer, projectleader, projectmanager, projectmember, registrationagency, registrationauthority, relatedperson, researchgroup, researcher, rightsholder, sponsor, supervisor, workpackageleader +role_map = { + "academic partner": "", + "architect": "", + "artist": "", + "associated name": "", + "author": "", + "author of introduction, etc.": "", + "book designer": "", + "bookjacket designer": "", + "calligrapher": "", + "cinematographer": "", + "collaborator": "", + "compiler": "", + "creator": "", + "curator": "", + "curator assistant": "", + "designer": "", + "editor": "editor", + "founder": "", + "illustrator": "", + "installation artist": "", + "instructor assistant": "", + "instructor/curator": "", + "interviewee": "", + "interviewer": "", + "manufacturer": "", + "minute taker": "", + "narrator": "", + "organizer": "", + "organizer of meeting": "", + "painter": "", + "performance artist": "", + "performer": "", + "photographer": "", + "platemaker": "", + "poet": "", + "printer": "", + "printmaker": "", + "producer": "", + "professor": "", + "publisher": "", + "recording engineer": "", + "researcher": "researcher", + "reviewer": "", + "sculptor": "", + "singer songwriter": "", + "speaker": "", + "teacher": "", + "transcriber": "", + "writer": "", +} diff --git a/migrate/names.py b/migrate/names.py new file mode 100644 index 0000000..9c6c6ed --- /dev/null +++ b/migrate/names.py @@ -0,0 +1,86 @@ +import re + +import spacy + +nlp = spacy.load("en_core_web_lg") + + +def ner(str): + # return a list of named PERSON or ORG entities from a string + # https://spacy.io/usage/linguistic-features#named-entities + with nlp.disable_pipes( + ["tok2vec", "tagger", "parser", "attribute_ruler", "lemmatizer"] + ): + doc = nlp(str) + return [ + {"entity": e.text, "type": e.label_} + for e in doc.ents + if e.label_ in ("PERSON", "ORG") + ] + + +def entity_to_name(entity, namePart): + if entity["type"] == "PERSON": + return parse_name(entity["entity"]) + else: + # default to organization + return {"name": namePart} + + +def parse_name(namePart): + """parse wild variety of name strings into {givename, familyname} + or, if it looks like an orgnaization name, return only {name}""" + + # semi-colon separated list of names + if ";" in namePart: + return [parse_name(p) for p in namePart.split("; ")] + + # usually Surname, Givenname but sometimes other things + if "," in namePart: + # last, first + parts = namePart.split(",") + if len(parts) == 2: + return {"given_name": parts[1], "family_name": parts[0]} + # name with a DOB/dath date string after a second comma + if len(parts) == 3 and re.match("\d{4}\-(\d{4})?", parts[2].strip()): + return {"given_name": parts[1], "family_name": parts[0]} + # two or more commas, maybe we have a comma-separated list of names? + if len(parts) > 2: + entities = ner(namePart) + if len(entities) == 1: + # just one entity, easy, assume the NER type inference is correct + return entity_to_name(entities[0], namePart) + if len(entities) > 1: + # if we have more than one PERSON entity, assume we have a list of names + if len([e for e in entities if e["type"] == "PERSON"]) > 1: + return [parse_name(p) for p in parts] + # split on spaces, often "Givenname Surname", but multiple spaces is where it gets tricky + else: + parts = namePart.split(" ") + if len(parts) == 1: + # looks like an organization name + return {"name": namePart} + if len(parts) == 2: + return {"given_name": parts[0], "family_name": parts[1]} + if len(parts) == 3: + # could be "First Second Third" name or an organization + entities = ner(namePart) + if len(entities) == 0: + # no entities, most likely an organization + return {"name": namePart} + elif len(entities) == 1: + return {"given_name": " ".join(parts[0:2]), "family_name": parts[2]} + # more than one entity but they're all PERSON, assume one name + elif len(entities) > 1 and len( + [e for e in entities if e["type"] == "PERSON"] + ) == len(entities): + l = len(parts) + return { + "given_name": " ".join(parts[0 : (l - 1)]), + "family_name": parts[l - 1], + } + else: + # multiple entities of different types, no comma, hard to say what's going on here + raise Exception( + f'Found multiple entities in namePart "{namePart}": {entities}' + ) diff --git a/migrate.py b/migrate/record.py similarity index 95% rename from migrate.py rename to migrate/record.py index 76e6aa0..af3e304 100644 --- a/migrate.py +++ b/migrate/record.py @@ -9,16 +9,9 @@ import xmltodict - -def mklist(x): - # ensure value is a list - if type(x) == list: - return x - elif type(x) == str or type(x) == dict: - return [x] - elif x is None: - return [] - # ? should we raise a TypeError here? +from names import parse_name +from maps import role_map +from utils import mklist def postprocessor(path, key, value): @@ -89,6 +82,17 @@ def addl_titles(self): atitles.append({"title": title, "type": {"id": "other"}}) return atitles + @property + def creators(self): + # mods/name + # https://inveniordm.docs.cern.ch/reference/metadata/#creators-1-n + names = mklist(self.xml.get("mods", {}).get("name")) + creators = [] + for name in names: + # TODO + creators.append(parse_name(name["namePart"])) + return creators + @property def type(self): # https://127.0.0.1:5000/api/vocabularies/resourcetypes @@ -150,7 +154,7 @@ def get(self): # contributor/creator roles: contactperson, datacollector, datacurator, datamanager, distributor, editor, hostinginstitution, other, producer, projectleader, projectmanager, projectmember, registrationagency, registrationauthority, relatedperson, researchgroup, researcher, rightsholder, sponsor, supervisor, workpackageleader "contributors": [], # https://inveniordm.docs.cern.ch/reference/metadata/#creators-1-n - "creators": [], + "creators": self.creators, # additional NON-PUBLICATION dates # date types: accepted, available, collected, copyrighted, created, issued, other, submitted, updated, valid, withdrawn "dates": [], diff --git a/tests.py b/migrate/tests.py similarity index 98% rename from tests.py rename to migrate/tests.py index e89dad1..891de44 100644 --- a/tests.py +++ b/migrate/tests.py @@ -1,6 +1,7 @@ import pytest -from migrate import * +from record import Record +from utils import mklist @pytest.mark.parametrize( diff --git a/migrate/utils.py b/migrate/utils.py new file mode 100644 index 0000000..180f25b --- /dev/null +++ b/migrate/utils.py @@ -0,0 +1,9 @@ +def mklist(x): + # ensure value is a list + if type(x) == list: + return x + elif type(x) == str or type(x) == dict: + return [x] + elif x is None: + return [] + # ? should we 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get dependencies poetry shell # enter venv +python -m spacy download en_core_web_lg # download spacy model for Named Entity Recognition pytest -v tests.py # run tests ```