-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathenvironment.lock.yml
266 lines (266 loc) · 8.84 KB
/
environment.lock.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
name: pipeline
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.2.11=hd590300_1
- argcomplete=3.2.3=pyhd8ed1ab_0
- asttokens=2.4.1=pyhd8ed1ab_0
- bash=5.2.21=h7f99829_0
- bash_kernel=0.9.3=pyh4f82c71_0
- binutils_impl_linux-64=2.40=hf600244_0
- bioconductor-biobase=2.62.0=r43ha9d7317_1
- bioconductor-biocgenerics=0.48.1=r43hdfd78af_2
- bioconductor-biocparallel=1.36.0=r43hf17093f_1
- bioconductor-data-packages=20231203=hdfd78af_0
- bioconductor-delayedarray=0.28.0=r43ha9d7317_1
- bioconductor-deseq2=1.42.0=r43hf17093f_0
- bioconductor-genomeinfodb=1.38.1=r43hdfd78af_1
- bioconductor-genomeinfodbdata=1.2.11=r43hdfd78af_1
- bioconductor-genomicranges=1.54.1=r43ha9d7317_1
- bioconductor-iranges=2.36.0=r43ha9d7317_1
- bioconductor-matrixgenerics=1.14.0=r43hdfd78af_1
- bioconductor-s4arrays=1.2.0=r43ha9d7317_1
- bioconductor-s4vectors=0.40.2=r43ha9d7317_1
- bioconductor-sparsearray=1.2.2=r43ha9d7317_1
- bioconductor-summarizedexperiment=1.32.0=r43hdfd78af_0
- bioconductor-xvector=0.42.0=r43ha9d7317_1
- bioconductor-zlibbioc=1.48.0=r43ha9d7317_1
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py310hc6cd4ac_1
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.28.1=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- cairo=1.18.0=h3faef2a_0
- certifi=2024.2.2=pyhd8ed1ab_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- comm=0.2.2=pyhd8ed1ab_0
- contourpy=1.2.1=py310hd41b1e2_0
- curl=8.7.1=hca28451_0
- cycler=0.12.1=pyhd8ed1ab_0
- debugpy=1.8.1=py310hc6cd4ac_0
- decorator=5.1.1=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.6.2=h59595ed_0
- fastqc=0.12.1=hdfd78af_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_1
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.51.0=py310h2372a71_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=13.2.0=h338b0a0_5
- gettext=0.22.5=h59595ed_2
- gettext-tools=0.22.5=h59595ed_2
- gfortran_impl_linux-64=13.2.0=h76e1118_5
- giflib=5.2.2=hd590300_0
- graphite2=1.3.13=h59595ed_1003
- gxx_impl_linux-64=13.2.0=h338b0a0_5
- harfbuzz=8.3.0=h3d44ed6_0
- hisat2=2.2.1=hdbdd923_6
- htseq=2.0.5=py310h5aa3a86_1
- htslib=1.19.1=h81da01d_2
- icu=73.2=h59595ed_0
- idna=3.6=pyhd8ed1ab_0
- importlib-metadata=7.1.0=pyha770c72_0
- importlib_metadata=7.1.0=hd8ed1ab_0
- ipykernel=6.29.3=pyhd33586a_0
- ipython=8.22.2=pyh707e725_0
- jedi=0.19.1=pyhd8ed1ab_0
- jq=1.7.1=hd590300_0
- jupyter_client=8.6.1=pyhd8ed1ab_0
- jupyter_core=5.7.2=py310hff52083_0
- kernel-headers_linux-64=2.6.32=he073ed8_17
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py310hd41b1e2_1
- krb5=1.21.2=h659d440_0
- lcms2=2.15=h7f713cb_2
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libasprintf=0.22.5=h661eb56_2
- libasprintf-devel=0.22.5=h661eb56_2
- libblas=3.9.0=22_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=22_linux64_openblas
- libcups=2.3.3=h4637d8d_4
- libcurl=8.7.1=hca28451_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libexpat=2.6.2=h59595ed_0
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=13.2.0=ha9c7c90_105
- libgcc-ng=13.2.0=h807b86a_5
- libgettextpo=0.22.5=h59595ed_2
- libgettextpo-devel=0.22.5=h59595ed_2
- libgfortran-ng=13.2.0=h69a702a_5
- libgfortran5=13.2.0=ha4646dd_5
- libglib=2.78.1=hebfc3b9_0
- libgomp=13.2.0=h807b86a_5
- libiconv=1.17=hd590300_2
- libjpeg-turbo=2.1.5.1=hd590300_1
- liblapack=3.9.0=22_linux64_openblas
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.27=pthreads_h413a1c8_0
- libpng=1.6.43=h2797004_0
- libsanitizer=13.2.0=h7e041cc_5
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.45.2=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.2.0=ha9c7c90_105
- libstdcxx-ng=13.2.0=h7e041cc_5
- libtiff=4.6.0=h8b53f26_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=hd590300_1
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libzlib=1.2.13=hd590300_5
- make=4.3=hd18ef5c_1
- matplotlib-base=3.8.4=py310h62c0568_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.4.20240210=h59595ed_0
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- numpy=1.26.4=py310hb13e2d6_0
- oniguruma=6.9.9=hd590300_0
- openjdk=20.0.2=hfea2f88_1
- openjpeg=2.5.2=h488ebb8_0
- openssl=3.2.1=hd590300_1
- packaging=24.0=pyhd8ed1ab_0
- pandas=2.2.1=py310hcc13569_0
- pango=1.50.14=ha41ecd1_2
- parso=0.8.4=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=7_hd590300_perl5
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pillow=10.0.1=py310h29da1c1_1
- pip=24.0=pyhd8ed1ab_0
- pixman=0.43.2=h59595ed_0
- platformdirs=4.2.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.42=pyha770c72_0
- psutil=5.9.8=py310h2372a71_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pygments=2.17.2=pyhd8ed1ab_0
- pyparsing=3.1.2=pyhd8ed1ab_0
- pysam=0.22.0=py310h41dec4a_1
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.14=hd12c33a_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python-wget=3.2=py_0
- python_abi=3.10=4_cp310
- pytz=2024.1=pyhd8ed1ab_0
- pyyaml=6.0.1=py310h2372a71_1
- pyzmq=25.1.2=py310h795f18f_0
- r-abind=1.4_5=r43hc72bb7e_1005
- r-base=4.3.1=h639d9d3_5
- r-bh=1.84.0_0=r43hc72bb7e_0
- r-bitops=1.0_7=r43h57805ef_2
- r-cli=3.6.2=r43ha503ecb_0
- r-codetools=0.2_20=r43hc72bb7e_0
- r-colorspace=2.1_0=r43h57805ef_1
- r-cpp11=0.4.7=r43hc72bb7e_0
- r-crayon=1.5.2=r43hc72bb7e_2
- r-ellipsis=0.3.2=r43h57805ef_2
- r-fansi=1.0.6=r43h57805ef_0
- r-farver=2.1.1=r43ha503ecb_2
- r-formatr=1.14=r43hc72bb7e_1
- r-futile.logger=1.4.3=r43hc72bb7e_1005
- r-futile.options=1.0.1=r43hc72bb7e_1004
- r-ggplot2=3.5.0=r43hc72bb7e_0
- r-glue=1.7.0=r43h57805ef_0
- r-gtable=0.3.4=r43hc72bb7e_0
- r-isoband=0.2.7=r43ha503ecb_2
- r-labeling=0.4.3=r43hc72bb7e_0
- r-lambda.r=1.2.4=r43hc72bb7e_3
- r-lattice=0.22_6=r43h57805ef_0
- r-lifecycle=1.0.4=r43hc72bb7e_0
- r-locfit=1.5_9.9=r43h57805ef_0
- r-magrittr=2.0.3=r43h57805ef_2
- r-mass=7.3_60=r43h57805ef_1
- r-matrix=1.6_5=r43h316c678_0
- r-matrixstats=1.2.0=r43h57805ef_0
- r-mgcv=1.9_1=r43h316c678_0
- r-munsell=0.5.1=r43hc72bb7e_0
- r-nlme=3.1_164=r43h61816a4_0
- r-pillar=1.9.0=r43hc72bb7e_1
- r-pkgconfig=2.0.3=r43hc72bb7e_3
- r-r6=2.5.1=r43hc72bb7e_2
- r-rcolorbrewer=1.1_3=r43h785f33e_2
- r-rcpp=1.0.12=r43h7df8631_0
- r-rcpparmadillo=0.12.8.2.0=r43h08d816e_0
- r-rcurl=1.98_1.14=r43hf9611b0_0
- r-rlang=1.1.3=r43ha503ecb_0
- r-scales=1.3.0=r43hc72bb7e_0
- r-snow=0.4_4=r43hc72bb7e_2
- r-tibble=3.2.1=r43h57805ef_2
- r-utf8=1.2.4=r43h57805ef_0
- r-vctrs=0.6.5=r43ha503ecb_0
- r-viridislite=0.4.2=r43hc72bb7e_1
- r-withr=3.0.0=r43hc72bb7e_0
- readline=8.2=h8228510_1
- requests=2.31.0=pyhd8ed1ab_0
- samtools=1.19.2=h50ea8bc_1
- scipy=1.13.0=py310hb13e2d6_0
- sed=4.8=he412f7d_0
- setuptools=69.2.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- stack_data=0.6.2=pyhd8ed1ab_0
- sysroot_linux-64=2.12=he073ed8_17
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h0c5db8f_5
- toml=0.10.2=pyhd8ed1ab_0
- tomlkit=0.12.4=pyha770c72_0
- tornado=6.4=py310h2372a71_0
- traitlets=5.14.2=pyhd8ed1ab_0
- typing_extensions=4.11.0=pyha770c72_0
- tzdata=2024a=h0c530f3_0
- unicodedata2=15.1.0=py310h2372a71_0
- urllib3=2.2.1=pyhd8ed1ab_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- wheel=0.43.0=pyhd8ed1ab_1
- xmltodict=0.13.0=pyhd8ed1ab_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.9=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yq=3.2.3=pyhd8ed1ab_0
- zenodo_get=1.3.4=pyhd8ed1ab_0
- zeromq=4.3.5=h59595ed_1
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
prefix: /shared/home/cchapus/.conda/envs/pipeline