From 69129b69c3975fc49d3d18faaea811ce1a43e425 Mon Sep 17 00:00:00 2001 From: Damion Dooley Date: Thu, 9 Dec 2021 10:26:48 -0800 Subject: [PATCH] vocab update --- template/canada_covid19/data.js | 1184 +++++++++++++++--------------- template/canada_covid19/data.tsv | 2 +- 2 files changed, 597 insertions(+), 589 deletions(-) diff --git a/template/canada_covid19/data.js b/template/canada_covid19/data.js index 363c68de..c37f66fb 100644 --- a/template/canada_covid19/data.js +++ b/template/canada_covid19/data.js @@ -5,7 +5,7 @@ var DATA = [ { "fieldName": "specimen collector sample ID", "capitalize": "", - "ontology_id": "GENEPIO_0001123", + "ontology_id": "GENEPIO:0001123", "datatype": "xs:unique", "source": "", "dataStatus": [ @@ -52,7 +52,7 @@ var DATA = [ { "fieldName": "third party lab service provider name", "capitalize": "", - "ontology_id": "GENEPIO_0001202", + "ontology_id": "GENEPIO:0001202", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -73,7 +73,7 @@ var DATA = [ { "fieldName": "third party lab sample ID", "capitalize": "", - "ontology_id": "GENEPIO_0001149", + "ontology_id": "GENEPIO:0001149", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -94,7 +94,7 @@ var DATA = [ { "fieldName": "NML submitted specimen primary ID", "capitalize": "", - "ontology_id": "GENEPIO_0001125", + "ontology_id": "GENEPIO:0001125", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -115,7 +115,7 @@ var DATA = [ { "fieldName": "NML related specimen primary ID", "capitalize": "", - "ontology_id": "GENEPIO_0001128", + "ontology_id": "GENEPIO:0001128", "datatype": "xs:token", "source": "", "dataStatus": [ @@ -150,7 +150,7 @@ var DATA = [ { "fieldName": "IRIDA sample name", "capitalize": "", - "ontology_id": "GENEPIO_0001131", + "ontology_id": "GENEPIO:0001131", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -171,7 +171,7 @@ var DATA = [ { "fieldName": "umbrella bioproject accession", "capitalize": "UPPER", - "ontology_id": "GENEPIO_0001133", + "ontology_id": "GENEPIO:0001133", "datatype": "select", "source": "", "dataStatus": null, @@ -195,7 +195,7 @@ var DATA = [ { "fieldName": "bioproject accession", "capitalize": "UPPER", - "ontology_id": "GENEPIO_0001136", + "ontology_id": "GENEPIO:0001136", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -226,7 +226,7 @@ var DATA = [ { "fieldName": "biosample accession", "capitalize": "UPPER", - "ontology_id": "GENEPIO_0001139", + "ontology_id": "GENEPIO:0001139", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -252,7 +252,7 @@ var DATA = [ { "fieldName": "SRA accession", "capitalize": "UPPER", - "ontology_id": "GENEPIO_0001142", + "ontology_id": "GENEPIO:0001142", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -278,7 +278,7 @@ var DATA = [ { "fieldName": "GenBank accession", "capitalize": "UPPER", - "ontology_id": "GENEPIO_0001145", + "ontology_id": "GENEPIO:0001145", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -304,7 +304,7 @@ var DATA = [ { "fieldName": "GISAID accession", "capitalize": "UPPER", - "ontology_id": "GENEPIO_0001147", + "ontology_id": "GENEPIO:0001147", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -345,7 +345,7 @@ var DATA = [ { "fieldName": "sample collected by", "capitalize": "", - "ontology_id": "GENEPIO_0001153", + "ontology_id": "GENEPIO:0001153", "datatype": "select", "source": "", "dataStatus": [ @@ -425,7 +425,7 @@ var DATA = [ { "fieldName": "sample collector contact email", "capitalize": "", - "ontology_id": "GENEPIO_0001156", + "ontology_id": "GENEPIO:0001156", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -447,7 +447,7 @@ var DATA = [ { "fieldName": "sample collector contact address", "capitalize": "", - "ontology_id": "GENEPIO_0001158", + "ontology_id": "GENEPIO:0001158", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -473,7 +473,7 @@ var DATA = [ { "fieldName": "sequence submitted by", "capitalize": "", - "ontology_id": "GENEPIO_0001159", + "ontology_id": "GENEPIO:0001159", "datatype": "select", "source": "", "dataStatus": [ @@ -548,7 +548,7 @@ var DATA = [ { "fieldName": "sequence submitter contact email", "capitalize": "", - "ontology_id": "GENEPIO_0001165", + "ontology_id": "GENEPIO:0001165", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -569,7 +569,7 @@ var DATA = [ { "fieldName": "sequence submitter contact address", "capitalize": "", - "ontology_id": "GENEPIO_0001167", + "ontology_id": "GENEPIO:0001167", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -595,7 +595,7 @@ var DATA = [ { "fieldName": "sample collection date", "capitalize": "", - "ontology_id": "GENEPIO_0001174", + "ontology_id": "GENEPIO:0001174", "datatype": "xs:date", "source": "", "dataStatus": [ @@ -642,7 +642,7 @@ var DATA = [ { "fieldName": "sample collection date precision", "capitalize": "", - "ontology_id": "GENEPIO_0001177", + "ontology_id": "GENEPIO:0001177", "datatype": "select", "source": "", "dataStatus": null, @@ -679,7 +679,7 @@ var DATA = [ { "fieldName": "sample received date", "capitalize": "", - "ontology_id": "GENEPIO_0001179", + "ontology_id": "GENEPIO:0001179", "datatype": "xs:date", "source": "", "dataStatus": [ @@ -706,7 +706,7 @@ var DATA = [ { "fieldName": "geo_loc_name (country)", "capitalize": "", - "ontology_id": "GENEPIO_0001181", + "ontology_id": "GENEPIO:0001181", "datatype": "select", "source": "", "dataStatus": [ @@ -751,824 +751,824 @@ var DATA = [ }, "schema:ItemList": { "Afghanistan": { - "ontology_id": "GAZ_00006882" + "ontology_id": "GAZ:00006882" }, "Albania": { - "ontology_id": "GAZ_00002953" + "ontology_id": "GAZ:00002953" }, "Algeria": { - "ontology_id": "GAZ_00000563" + "ontology_id": "GAZ:00000563" }, "American Samoa": { - "ontology_id": "GAZ_00003957" + "ontology_id": "GAZ:00003957" }, "Andorra": { - "ontology_id": "GAZ_00002948" + "ontology_id": "GAZ:00002948" }, "Angola": { - "ontology_id": "GAZ_00001095" + "ontology_id": "GAZ:00001095" }, "Anguilla": { - "ontology_id": "GAZ_00009159" + "ontology_id": "GAZ:00009159" }, "Antarctica": { - "ontology_id": "GAZ_00000462" + "ontology_id": "GAZ:00000462" }, "Antigua and Barbuda": { - "ontology_id": "GAZ_00006883" + "ontology_id": "GAZ:00006883" }, "Argentina": { - "ontology_id": "GAZ_00002928" + "ontology_id": "GAZ:00002928" }, "Armenia": { - "ontology_id": "GAZ_00004094" + "ontology_id": "GAZ:00004094" }, "Aruba": { - "ontology_id": "GAZ_00004025" + "ontology_id": "GAZ:00004025" }, "Ashmore and Cartier Islands": { - "ontology_id": "GAZ_00005901" + "ontology_id": "GAZ:00005901" }, "Australia": { - "ontology_id": "GAZ_00000463" + "ontology_id": "GAZ:00000463" }, "Austria": { - "ontology_id": "GAZ_00002942" + "ontology_id": "GAZ:00002942" }, "Azerbaijan": { - "ontology_id": "GAZ_00004941" + "ontology_id": "GAZ:00004941" }, "Bahamas": { - "ontology_id": "GAZ_00002733" + "ontology_id": "GAZ:00002733" }, "Bahrain": { - "ontology_id": "GAZ_00005281" + "ontology_id": "GAZ:00005281" }, "Baker Island": { - "ontology_id": "GAZ_00007117" + "ontology_id": "GAZ:00007117" }, "Bangladesh": { - "ontology_id": "GAZ_00003750" + "ontology_id": "GAZ:00003750" }, "Barbados": { - "ontology_id": "GAZ_00001251" + "ontology_id": "GAZ:00001251" }, "Bassas da India": { - "ontology_id": "GAZ_00005810" + "ontology_id": "GAZ:00005810" }, "Belarus": { - "ontology_id": "GAZ_00006886" + "ontology_id": "GAZ:00006886" }, "Belgium": { - "ontology_id": "GAZ_00002938" + "ontology_id": "GAZ:00002938" }, "Belize": { - "ontology_id": "GAZ_00002934" + "ontology_id": "GAZ:00002934" }, "Benin": { - "ontology_id": "GAZ_00000904" + "ontology_id": "GAZ:00000904" }, "Bermuda": { - "ontology_id": "GAZ_00001264" + "ontology_id": "GAZ:00001264" }, "Bhutan": { - "ontology_id": "GAZ_00003920" + "ontology_id": "GAZ:00003920" }, "Bolivia": { - "ontology_id": "GAZ_00002511" + "ontology_id": "GAZ:00002511" }, "Borneo": { - "ontology_id": "GAZ_00025355" + "ontology_id": "GAZ:00025355" }, "Bosnia and Herzegovina": { - "ontology_id": "GAZ_00006887" + "ontology_id": "GAZ:00006887" }, "Botswana": { - "ontology_id": "GAZ_00001097" + "ontology_id": "GAZ:00001097" }, "Bouvet Island": { - "ontology_id": "GAZ_00001453" + "ontology_id": "GAZ:00001453" }, "Brazil": { - "ontology_id": "GAZ_00002828" + "ontology_id": "GAZ:00002828" }, "British Virgin Islands": { - "ontology_id": "GAZ_00003961" + "ontology_id": "GAZ:00003961" }, "Brunei": { - "ontology_id": "GAZ_00003901" + "ontology_id": "GAZ:00003901" }, "Bulgaria": { - "ontology_id": "GAZ_00002950" + "ontology_id": "GAZ:00002950" }, "Burkina Faso": { - "ontology_id": "GAZ_00000905" + "ontology_id": "GAZ:00000905" }, "Burundi": { - "ontology_id": "GAZ_00001090" + "ontology_id": "GAZ:00001090" }, "Cambodia": { - "ontology_id": "GAZ_00006888" + "ontology_id": "GAZ:00006888" }, "Cameroon": { - "ontology_id": "GAZ_00001093" + "ontology_id": "GAZ:00001093" }, "Canada": { - "ontology_id": "GAZ_00002560" + "ontology_id": "GAZ:00002560" }, "Cape Verde": { - "ontology_id": "GAZ_00001227" + "ontology_id": "GAZ:00001227" }, "Cayman Islands": { - "ontology_id": "GAZ_00003986" + "ontology_id": "GAZ:00003986" }, "Central African Republic": { - "ontology_id": "GAZ_00001089" + "ontology_id": "GAZ:00001089" }, "Chad": { - "ontology_id": "GAZ_00000586" + "ontology_id": "GAZ:00000586" }, "Chile": { - "ontology_id": "GAZ_00002825" + "ontology_id": "GAZ:00002825" }, "China": { - "ontology_id": "GAZ_00002845" + "ontology_id": "GAZ:00002845" }, "Christmas Island": { - "ontology_id": "GAZ_00005915" + "ontology_id": "GAZ:00005915" }, "Clipperton Island": { - "ontology_id": "GAZ_00005838" + "ontology_id": "GAZ:00005838" }, "Cocos Islands": { - "ontology_id": "GAZ_00009721" + "ontology_id": "GAZ:00009721" }, "Colombia": { - "ontology_id": "GAZ_00002929" + "ontology_id": "GAZ:00002929" }, "Comoros": { - "ontology_id": "GAZ_00005820" + "ontology_id": "GAZ:00005820" }, "Cook Islands": { - "ontology_id": "GAZ_00053798" + "ontology_id": "GAZ:00053798" }, "Coral Sea Islands": { - "ontology_id": "GAZ_00005917" + "ontology_id": "GAZ:00005917" }, "Costa Rica": { - "ontology_id": "GAZ_00002901" + "ontology_id": "GAZ:00002901" }, "Cote d'Ivoire": { - "ontology_id": "GAZ_00000906" + "ontology_id": "GAZ:00000906" }, "Croatia": { - "ontology_id": "GAZ_00002719" + "ontology_id": "GAZ:00002719" }, "Cuba": { - "ontology_id": "GAZ_00003762" + "ontology_id": "GAZ:00003762" }, "Curacao": { "ontology_id": "GAZ:00012582" }, "Cyprus": { - "ontology_id": "GAZ_00004006" + "ontology_id": "GAZ:00004006" }, "Czech Republic": { - "ontology_id": "GAZ_00002954" + "ontology_id": "GAZ:00002954" }, "Democratic Republic of the Congo": { - "ontology_id": "GAZ_00001086" + "ontology_id": "GAZ:00001086" }, "Denmark": { - "ontology_id": "GAZ_00005852" + "ontology_id": "GAZ:00005852" }, "Djibouti": { - "ontology_id": "GAZ_00000582" + "ontology_id": "GAZ:00000582" }, "Dominica": { - "ontology_id": "GAZ_00006890" + "ontology_id": "GAZ:00006890" }, "Dominican Republic": { - "ontology_id": "GAZ_00003952" + "ontology_id": "GAZ:00003952" }, "Ecuador": { - "ontology_id": "GAZ_00002912" + "ontology_id": "GAZ:00002912" }, "Egypt": { - "ontology_id": "GAZ_00003934" + "ontology_id": "GAZ:00003934" }, "El Salvador": { - "ontology_id": "GAZ_00002935" + "ontology_id": "GAZ:00002935" }, "Equatorial Guinea": { - "ontology_id": "GAZ_00001091" + "ontology_id": "GAZ:00001091" }, "Eritrea": { - "ontology_id": "GAZ_00000581" + "ontology_id": "GAZ:00000581" }, "Estonia": { - "ontology_id": "GAZ_00002959" + "ontology_id": "GAZ:00002959" }, "Eswatini": { - "ontology_id": "GAZ_00001099" + "ontology_id": "GAZ:00001099" }, "Ethiopia": { - "ontology_id": "GAZ_00000567" + "ontology_id": "GAZ:00000567" }, "Europa Island": { - "ontology_id": "GAZ_00005811" + "ontology_id": "GAZ:00005811" }, "Falkland Islands (Islas Malvinas)": { - "ontology_id": "GAZ_00001412" + "ontology_id": "GAZ:00001412" }, "Faroe Islands": { - "ontology_id": "GAZ_00059206" + "ontology_id": "GAZ:00059206" }, "Fiji": { - "ontology_id": "GAZ_00006891" + "ontology_id": "GAZ:00006891" }, "Finland": { - "ontology_id": "GAZ_00002937" + "ontology_id": "GAZ:00002937" }, "France": { - "ontology_id": "GAZ_00003940" + "ontology_id": "GAZ:00003940" }, "French Guiana": { - "ontology_id": "GAZ_00002516" + "ontology_id": "GAZ:00002516" }, "French Polynesia": { - "ontology_id": "GAZ_00002918" + "ontology_id": "GAZ:00002918" }, "French Southern and Antarctic Lands": { - "ontology_id": "GAZ_00003753" + "ontology_id": "GAZ:00003753" }, "Gabon": { - "ontology_id": "GAZ_00001092" + "ontology_id": "GAZ:00001092" }, "Gambia": { - "ontology_id": "GAZ_00000907" + "ontology_id": "GAZ:00000907" }, "Gaza Strip": { - "ontology_id": "GAZ_00009571" + "ontology_id": "GAZ:00009571" }, "Georgia": { - "ontology_id": "GAZ_00004942" + "ontology_id": "GAZ:00004942" }, "Germany": { - "ontology_id": "GAZ_00002646" + "ontology_id": "GAZ:00002646" }, "Ghana": { - "ontology_id": "GAZ_00000908" + "ontology_id": "GAZ:00000908" }, "Gibraltar": { - "ontology_id": "GAZ_00003987" + "ontology_id": "GAZ:00003987" }, "Glorioso Islands": { - "ontology_id": "GAZ_00005808" + "ontology_id": "GAZ:00005808" }, "Greece": { - "ontology_id": "GAZ_00002945" + "ontology_id": "GAZ:00002945" }, "Greenland": { - "ontology_id": "GAZ_00001507" + "ontology_id": "GAZ:00001507" }, "Grenada": { - "ontology_id": "GAZ_02000573" + "ontology_id": "GAZ:02000573" }, "Guadeloupe": { - "ontology_id": "GAZ_00067142" + "ontology_id": "GAZ:00067142" }, "Guam": { - "ontology_id": "GAZ_00003706" + "ontology_id": "GAZ:00003706" }, "Guatemala": { - "ontology_id": "GAZ_00002936" + "ontology_id": "GAZ:00002936" }, "Guernsey": { - "ontology_id": "GAZ_00001550" + "ontology_id": "GAZ:00001550" }, "Guinea": { - "ontology_id": "GAZ_00000909" + "ontology_id": "GAZ:00000909" }, "Guinea-Bissau": { - "ontology_id": "GAZ_00000910" + "ontology_id": "GAZ:00000910" }, "Guyana": { - "ontology_id": "GAZ_00002522" + "ontology_id": "GAZ:00002522" }, "Haiti": { - "ontology_id": "GAZ_00003953" + "ontology_id": "GAZ:00003953" }, "Heard Island and McDonald Islands": { - "ontology_id": "GAZ_00009718" + "ontology_id": "GAZ:00009718" }, "Honduras": { - "ontology_id": "GAZ_00002894" + "ontology_id": "GAZ:00002894" }, "Hong Kong": { - "ontology_id": "GAZ_00003203" + "ontology_id": "GAZ:00003203" }, "Howland Island": { - "ontology_id": "GAZ_00007120" + "ontology_id": "GAZ:00007120" }, "Hungary": { - "ontology_id": "GAZ_00002952" + "ontology_id": "GAZ:00002952" }, "Iceland": { - "ontology_id": "GAZ_00000843" + "ontology_id": "GAZ:00000843" }, "India": { - "ontology_id": "GAZ_00002839" + "ontology_id": "GAZ:00002839" }, "Indonesia": { - "ontology_id": "GAZ_00003727" + "ontology_id": "GAZ:00003727" }, "Iran": { - "ontology_id": "GAZ_00004474" + "ontology_id": "GAZ:00004474" }, "Iraq": { - "ontology_id": "GAZ_00004483" + "ontology_id": "GAZ:00004483" }, "Ireland": { - "ontology_id": "GAZ_00002943" + "ontology_id": "GAZ:00002943" }, "Isle of Man": { - "ontology_id": "GAZ_00052477" + "ontology_id": "GAZ:00052477" }, "Israel": { - "ontology_id": "GAZ_00002476" + "ontology_id": "GAZ:00002476" }, "Italy": { - "ontology_id": "GAZ_00002650" + "ontology_id": "GAZ:00002650" }, "Jamaica": { - "ontology_id": "GAZ_00003781" + "ontology_id": "GAZ:00003781" }, "Jan Mayen": { - "ontology_id": "GAZ_00005853" + "ontology_id": "GAZ:00005853" }, "Japan": { - "ontology_id": "GAZ_00002747" + "ontology_id": "GAZ:00002747" }, "Jarvis Island": { - "ontology_id": "GAZ_00007118" + "ontology_id": "GAZ:00007118" }, "Jersey": { - "ontology_id": "GAZ_00001551" + "ontology_id": "GAZ:00001551" }, "Johnston Atoll": { - "ontology_id": "GAZ_00007114" + "ontology_id": "GAZ:00007114" }, "Jordan": { - "ontology_id": "GAZ_00002473" + "ontology_id": "GAZ:00002473" }, "Juan de Nova Island": { - "ontology_id": "GAZ_00005809" + "ontology_id": "GAZ:00005809" }, "Kazakhstan": { - "ontology_id": "GAZ_00004999" + "ontology_id": "GAZ:00004999" }, "Kenya": { - "ontology_id": "GAZ_00001101" + "ontology_id": "GAZ:00001101" }, "Kerguelen Archipelago": { - "ontology_id": "GAZ_00005682" + "ontology_id": "GAZ:00005682" }, "Kingman Reef": { - "ontology_id": "GAZ_00007116" + "ontology_id": "GAZ:00007116" }, "Kiribati": { - "ontology_id": "GAZ_00006894" + "ontology_id": "GAZ:00006894" }, "Kosovo": { - "ontology_id": "GAZ_00011337" + "ontology_id": "GAZ:00011337" }, "Kuwait": { - "ontology_id": "GAZ_00005285" + "ontology_id": "GAZ:00005285" }, "Kyrgyzstan": { - "ontology_id": "GAZ_00006893" + "ontology_id": "GAZ:00006893" }, "Laos": { - "ontology_id": "GAZ_00006889" + "ontology_id": "GAZ:00006889" }, "Latvia": { - "ontology_id": "GAZ_00002958" + "ontology_id": "GAZ:00002958" }, "Lebanon": { - "ontology_id": "GAZ_00002478" + "ontology_id": "GAZ:00002478" }, "Lesotho": { - "ontology_id": "GAZ_00001098" + "ontology_id": "GAZ:00001098" }, "Liberia": { - "ontology_id": "GAZ_00000911" + "ontology_id": "GAZ:00000911" }, "Libya": { - "ontology_id": "GAZ_00000566" + "ontology_id": "GAZ:00000566" }, "Liechtenstein": { - "ontology_id": "GAZ_00003858" + "ontology_id": "GAZ:00003858" }, "Line Islands": { - "ontology_id": "GAZ_00007144" + "ontology_id": "GAZ:00007144" }, "Lithuania": { - "ontology_id": "GAZ_00002960" + "ontology_id": "GAZ:00002960" }, "Luxembourg": { - "ontology_id": "GAZ_00002947" + "ontology_id": "GAZ:00002947" }, "Macau": { - "ontology_id": "GAZ_00003202" + "ontology_id": "GAZ:00003202" }, "Madagascar": { - "ontology_id": "GAZ_00001108" + "ontology_id": "GAZ:00001108" }, "Malawi": { - "ontology_id": "GAZ_00001105" + "ontology_id": "GAZ:00001105" }, "Malaysia": { - "ontology_id": "GAZ_00003902" + "ontology_id": "GAZ:00003902" }, "Maldives": { - "ontology_id": "GAZ_00006924" + "ontology_id": "GAZ:00006924" }, "Mali": { - "ontology_id": "GAZ_00000584" + "ontology_id": "GAZ:00000584" }, "Malta": { "ontology_id": "GAZ:00004017" }, "Marshall Islands": { - "ontology_id": "GAZ_00007161" + "ontology_id": "GAZ:00007161" }, "Martinique": { - "ontology_id": "GAZ_00067143" + "ontology_id": "GAZ:00067143" }, "Mauritania": { - "ontology_id": "GAZ_00000583" + "ontology_id": "GAZ:00000583" }, "Mauritius": { - "ontology_id": "GAZ_00003745" + "ontology_id": "GAZ:00003745" }, "Mayotte": { - "ontology_id": "GAZ_00003943" + "ontology_id": "GAZ:00003943" }, "Mexico": { - "ontology_id": "GAZ_00002852" + "ontology_id": "GAZ:00002852" }, "Micronesia": { - "ontology_id": "GAZ_00005862" + "ontology_id": "GAZ:00005862" }, "Midway Islands": { - "ontology_id": "GAZ_00007112" + "ontology_id": "GAZ:00007112" }, "Moldova": { - "ontology_id": "GAZ_00003897" + "ontology_id": "GAZ:00003897" }, "Monaco": { - "ontology_id": "GAZ_00003857" + "ontology_id": "GAZ:00003857" }, "Mongolia": { - "ontology_id": "GAZ_00008744" + "ontology_id": "GAZ:00008744" }, "Montenegro": { - "ontology_id": "GAZ_00006898" + "ontology_id": "GAZ:00006898" }, "Montserrat": { - "ontology_id": "GAZ_00003988" + "ontology_id": "GAZ:00003988" }, "Morocco": { - "ontology_id": "GAZ_00000565" + "ontology_id": "GAZ:00000565" }, "Mozambique": { - "ontology_id": "GAZ_00001100" + "ontology_id": "GAZ:00001100" }, "Myanmar": { - "ontology_id": "GAZ_00006899" + "ontology_id": "GAZ:00006899" }, "Namibia": { - "ontology_id": "GAZ_00001096" + "ontology_id": "GAZ:00001096" }, "Nauru": { - "ontology_id": "GAZ_00006900" + "ontology_id": "GAZ:00006900" }, "Navassa Island": { - "ontology_id": "GAZ_00007119" + "ontology_id": "GAZ:00007119" }, "Nepal": { - "ontology_id": "GAZ_00004399" + "ontology_id": "GAZ:00004399" }, "Netherlands": { - "ontology_id": "GAZ_00002946" + "ontology_id": "GAZ:00002946" }, "New Caledonia": { - "ontology_id": "GAZ_00005206" + "ontology_id": "GAZ:00005206" }, "New Zealand": { - "ontology_id": "GAZ_00000469" + "ontology_id": "GAZ:00000469" }, "Nicaragua": { - "ontology_id": "GAZ_00002978" + "ontology_id": "GAZ:00002978" }, "Niger": { - "ontology_id": "GAZ_00000585" + "ontology_id": "GAZ:00000585" }, "Nigeria": { - "ontology_id": "GAZ_00000912" + "ontology_id": "GAZ:00000912" }, "Niue": { - "ontology_id": "GAZ_00006902" + "ontology_id": "GAZ:00006902" }, "Norfolk Island": { - "ontology_id": "GAZ_00005908" + "ontology_id": "GAZ:00005908" }, "North Korea": { - "ontology_id": "GAZ_00002801" + "ontology_id": "GAZ:00002801" }, "North Macedonia": { - "ontology_id": "GAZ_00006895" + "ontology_id": "GAZ:00006895" }, "North Sea": { - "ontology_id": "GAZ_00002284" + "ontology_id": "GAZ:00002284" }, "Northern Mariana Islands": { - "ontology_id": "GAZ_00003958" + "ontology_id": "GAZ:00003958" }, "Norway": { - "ontology_id": "GAZ_00002699" + "ontology_id": "GAZ:00002699" }, "Oman": { - "ontology_id": "GAZ_00005283" + "ontology_id": "GAZ:00005283" }, "Pakistan": { - "ontology_id": "GAZ_00005246" + "ontology_id": "GAZ:00005246" }, "Palau": { - "ontology_id": "GAZ_00006905" + "ontology_id": "GAZ:00006905" }, "Panama": { - "ontology_id": "GAZ_00002892" + "ontology_id": "GAZ:00002892" }, "Papua New Guinea": { - "ontology_id": "GAZ_00003922" + "ontology_id": "GAZ:00003922" }, "Paracel Islands": { - "ontology_id": "GAZ_00010832" + "ontology_id": "GAZ:00010832" }, "Paraguay": { - "ontology_id": "GAZ_00002933" + "ontology_id": "GAZ:00002933" }, "Peru": { - "ontology_id": "GAZ_00002932" + "ontology_id": "GAZ:00002932" }, "Philippines": { - "ontology_id": "GAZ_00004525" + "ontology_id": "GAZ:00004525" }, "Pitcairn Islands": { - "ontology_id": "GAZ_00005867" + "ontology_id": "GAZ:00005867" }, "Poland": { - "ontology_id": "GAZ_00002939" + "ontology_id": "GAZ:00002939" }, "Portugal": { - "ontology_id": "GAZ_00004126" + "ontology_id": "GAZ:00004126" }, "Puerto Rico": { - "ontology_id": "GAZ_00006935" + "ontology_id": "GAZ:00006935" }, "Qatar": { - "ontology_id": "GAZ_00005286" + "ontology_id": "GAZ:00005286" }, "Republic of the Congo": { - "ontology_id": "GAZ_00001088" + "ontology_id": "GAZ:00001088" }, "Reunion": { - "ontology_id": "GAZ_00003945" + "ontology_id": "GAZ:00003945" }, "Romania": { - "ontology_id": "GAZ_00002951" + "ontology_id": "GAZ:00002951" }, "Ross Sea": { - "ontology_id": "GAZ_00023304" + "ontology_id": "GAZ:00023304" }, "Russia": { - "ontology_id": "GAZ_00002721" + "ontology_id": "GAZ:00002721" }, "Rwanda": { - "ontology_id": "GAZ_00001087" + "ontology_id": "GAZ:00001087" }, "Saint Helena": { - "ontology_id": "GAZ_00000849" + "ontology_id": "GAZ:00000849" }, "Saint Kitts and Nevis": { - "ontology_id": "GAZ_00006906" + "ontology_id": "GAZ:00006906" }, "Saint Lucia": { - "ontology_id": "GAZ_00006909" + "ontology_id": "GAZ:00006909" }, "Saint Pierre and Miquelon": { - "ontology_id": "GAZ_00003942" + "ontology_id": "GAZ:00003942" }, "Saint Martin": { - "ontology_id": "GAZ_00005841" + "ontology_id": "GAZ:00005841" }, "Saint Vincent and the Grenadines": { - "ontology_id": "GAZ_02000565" + "ontology_id": "GAZ:02000565" }, "Samoa": { - "ontology_id": "GAZ_00006910" + "ontology_id": "GAZ:00006910" }, "San Marino": { - "ontology_id": "GAZ_00003102" + "ontology_id": "GAZ:00003102" }, "Sao Tome and Principe": { - "ontology_id": "GAZ_00006927" + "ontology_id": "GAZ:00006927" }, "Saudi Arabia": { - "ontology_id": "GAZ_00005279" + "ontology_id": "GAZ:00005279" }, "Senegal": { - "ontology_id": "GAZ_00000913" + "ontology_id": "GAZ:00000913" }, "Serbia": { - "ontology_id": "GAZ_00002957" + "ontology_id": "GAZ:00002957" }, "Seychelles": { - "ontology_id": "GAZ_00006922" + "ontology_id": "GAZ:00006922" }, "Sierra Leone": { - "ontology_id": "GAZ_00000914" + "ontology_id": "GAZ:00000914" }, "Singapore": { - "ontology_id": "GAZ_00003923" + "ontology_id": "GAZ:00003923" }, "Sint Maarten": { - "ontology_id": "GAZ_00012579" + "ontology_id": "GAZ:00012579" }, "Slovakia": { - "ontology_id": "GAZ_00002956" + "ontology_id": "GAZ:00002956" }, "Slovenia": { - "ontology_id": "GAZ_00002955" + "ontology_id": "GAZ:00002955" }, "Solomon Islands": { - "ontology_id": "GAZ_00005275" + "ontology_id": "GAZ:00005275" }, "Somalia": { - "ontology_id": "GAZ_00001104" + "ontology_id": "GAZ:00001104" }, "South Africa": { - "ontology_id": "GAZ_00001094" + "ontology_id": "GAZ:00001094" }, "South Georgia and the South Sandwich Islands": { - "ontology_id": "GAZ_00003990" + "ontology_id": "GAZ:00003990" }, "South Korea": { - "ontology_id": "GAZ_00002802" + "ontology_id": "GAZ:00002802" }, "South Sudan": { - "ontology_id": "GAZ_00233439" + "ontology_id": "GAZ:00233439" }, "Spain": { "ontology_id": "GAZ:00000591" }, "Spratly Islands": { - "ontology_id": "GAZ_00010831" + "ontology_id": "GAZ:00010831" }, "Sri Lanka": { - "ontology_id": "GAZ_00003924" + "ontology_id": "GAZ:00003924" }, "State of Palestine": { - "ontology_id": "GAZ_00002475" + "ontology_id": "GAZ:00002475" }, "Sudan": { - "ontology_id": "GAZ_00000560" + "ontology_id": "GAZ:00000560" }, "Suriname": { - "ontology_id": "GAZ_00002525" + "ontology_id": "GAZ:00002525" }, "Svalbard": { - "ontology_id": "GAZ_00005396" + "ontology_id": "GAZ:00005396" }, "Swaziland": { - "ontology_id": "GAZ_00001099" + "ontology_id": "GAZ:00001099" }, "Sweden": { - "ontology_id": "GAZ_00002729" + "ontology_id": "GAZ:00002729" }, "Switzerland": { - "ontology_id": "GAZ_00002941" + "ontology_id": "GAZ:00002941" }, "Syria": { - "ontology_id": "GAZ_00002474" + "ontology_id": "GAZ:00002474" }, "Taiwan": { - "ontology_id": "GAZ_00005341" + "ontology_id": "GAZ:00005341" }, "Tajikistan": { - "ontology_id": "GAZ_00006912" + "ontology_id": "GAZ:00006912" }, "Tanzania": { - "ontology_id": "GAZ_00001103" + "ontology_id": "GAZ:00001103" }, "Thailand": { - "ontology_id": "GAZ_00003744" + "ontology_id": "GAZ:00003744" }, "Timor-Leste": { - "ontology_id": "GAZ_00006913" + "ontology_id": "GAZ:00006913" }, "Togo": { - "ontology_id": "GAZ_00000915" + "ontology_id": "GAZ:00000915" }, "Tokelau": { - "ontology_id": "GAZ_00260188" + "ontology_id": "GAZ:00260188" }, "Tonga": { - "ontology_id": "GAZ_00006916" + "ontology_id": "GAZ:00006916" }, "Trinidad and Tobago": { - "ontology_id": "GAZ_00003767" + "ontology_id": "GAZ:00003767" }, "Tromelin Island": { - "ontology_id": "GAZ_00005812" + "ontology_id": "GAZ:00005812" }, "Tunisia": { - "ontology_id": "GAZ_00000562" + "ontology_id": "GAZ:00000562" }, "Turkey": { - "ontology_id": "GAZ_00000558" + "ontology_id": "GAZ:00000558" }, "Turkmenistan": { - "ontology_id": "GAZ_00005018" + "ontology_id": "GAZ:00005018" }, "Turks and Caicos Islands": { - "ontology_id": "GAZ_00003955" + "ontology_id": "GAZ:00003955" }, "Tuvalu": { - "ontology_id": "GAZ_00009715" + "ontology_id": "GAZ:00009715" }, "United States of America": { - "ontology_id": "GAZ_00002459" + "ontology_id": "GAZ:00002459" }, "Uganda": { - "ontology_id": "GAZ_00001102" + "ontology_id": "GAZ:00001102" }, "Ukraine": { - "ontology_id": "GAZ_00002724" + "ontology_id": "GAZ:00002724" }, "United Arab Emirates": { - "ontology_id": "GAZ_00005282" + "ontology_id": "GAZ:00005282" }, "United Kingdom": { - "ontology_id": "GAZ_00002637" + "ontology_id": "GAZ:00002637" }, "Uruguay": { - "ontology_id": "GAZ_00002930" + "ontology_id": "GAZ:00002930" }, "Uzbekistan": { - "ontology_id": "GAZ_00004979" + "ontology_id": "GAZ:00004979" }, "Vanuatu": { - "ontology_id": "GAZ_00006918" + "ontology_id": "GAZ:00006918" }, "Venezuela": { - "ontology_id": "GAZ_00002931" + "ontology_id": "GAZ:00002931" }, "Viet Nam": { - "ontology_id": "GAZ_00003756" + "ontology_id": "GAZ:00003756" }, "Virgin Islands": { - "ontology_id": "GAZ_00003959" + "ontology_id": "GAZ:00003959" }, "Wake Island": { - "ontology_id": "GAZ_00007111" + "ontology_id": "GAZ:00007111" }, "Wallis and Futuna": { - "ontology_id": "GAZ_00007191" + "ontology_id": "GAZ:00007191" }, "West Bank": { - "ontology_id": "GAZ_00009572" + "ontology_id": "GAZ:00009572" }, "Western Sahara": { - "ontology_id": "GAZ_00000564" + "ontology_id": "GAZ:00000564" }, "Yemen": { - "ontology_id": "GAZ_00005284" + "ontology_id": "GAZ:00005284" }, "Zambia": { - "ontology_id": "GAZ_00001107" + "ontology_id": "GAZ:00001107" }, "Zimbabwe": { - "ontology_id": "GAZ_00001106" + "ontology_id": "GAZ:00001106" } } }, { "fieldName": "geo_loc_name (state/province/territory)", "capitalize": "", - "ontology_id": "GENEPIO_0001185", + "ontology_id": "GENEPIO:0001185", "datatype": "select", "source": "", "dataStatus": [ @@ -1608,50 +1608,50 @@ var DATA = [ }, "schema:ItemList": { "Alberta": { - "ontology_id": "GAZ_00002566" + "ontology_id": "GAZ:00002566" }, "British Columbia": { - "ontology_id": "GAZ_00002562" + "ontology_id": "GAZ:00002562" }, "Manitoba": { - "ontology_id": "GAZ_00002571" + "ontology_id": "GAZ:00002571" }, "New Brunswick": { - "ontology_id": "GAZ_00002570" + "ontology_id": "GAZ:00002570" }, "Newfoundland and Labrador": { - "ontology_id": "GAZ_00002567" + "ontology_id": "GAZ:00002567" }, "Northwest Territories": { - "ontology_id": "GAZ_00002575" + "ontology_id": "GAZ:00002575" }, "Nova Scotia": { - "ontology_id": "GAZ_00002565" + "ontology_id": "GAZ:00002565" }, "Nunavut": { "ontology_id": "GAZ:00002574" }, "Ontario": { - "ontology_id": "GAZ_00002563" + "ontology_id": "GAZ:00002563" }, "Prince Edward Island": { - "ontology_id": "GAZ_00002572" + "ontology_id": "GAZ:00002572" }, "Quebec": { - "ontology_id": "GAZ_00002569" + "ontology_id": "GAZ:00002569" }, "Saskatchewan": { - "ontology_id": "GAZ_00002564" + "ontology_id": "GAZ:00002564" }, "Yukon": { - "ontology_id": "GAZ_00002576" + "ontology_id": "GAZ:00002576" } } }, { "fieldName": "geo_loc_name (city)", "capitalize": "", - "ontology_id": "GENEPIO_0001189", + "ontology_id": "GENEPIO:0001189", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -1677,7 +1677,7 @@ var DATA = [ { "fieldName": "organism", "capitalize": "", - "ontology_id": "GENEPIO_0001191", + "ontology_id": "GENEPIO:0001191", "datatype": "select", "source": "", "dataStatus": [ @@ -1717,10 +1717,10 @@ var DATA = [ }, "schema:ItemList": { "Severe acute respiratory syndrome coronavirus 2": { - "ontology_id": "NCBITaxon_2697049" + "ontology_id": "NCBITaxon:2697049" }, "RaTG13": { - "ontology_id": "NCBITaxon_2709072" + "ontology_id": "NCBITaxon:2709072" }, "RmYN02": { "ontology_id": "NCBITaxon NTR" @@ -1730,7 +1730,7 @@ var DATA = [ { "fieldName": "isolate", "capitalize": "", - "ontology_id": "GENEPIO_0001195", + "ontology_id": "GENEPIO:0001195", "datatype": "xs:token", "source": "", "dataStatus": [ @@ -1783,7 +1783,7 @@ var DATA = [ { "fieldName": "purpose of sampling", "capitalize": "", - "ontology_id": "GENEPIO_0001198", + "ontology_id": "GENEPIO:0001198", "datatype": "select", "source": "", "dataStatus": [ @@ -1829,7 +1829,7 @@ var DATA = [ "ontology_id": "HSO or NCIT NTR?" }, "Research": { - "ontology_id": "NCIT_c15429" + "ontology_id": "NCIT:c15429" }, "Surveillance": { "ontology_id": "HSO:0000268" @@ -1839,7 +1839,7 @@ var DATA = [ { "fieldName": "purpose of sampling details", "capitalize": "", - "ontology_id": "GENEPIO_0001200", + "ontology_id": "GENEPIO:0001200", "datatype": "xs:token", "source": "", "dataStatus": [ @@ -1881,7 +1881,7 @@ var DATA = [ { "fieldName": "NML submitted specimen type", "capitalize": "", - "ontology_id": "GENEPIO_0001204", + "ontology_id": "GENEPIO:0001204", "datatype": "select", "source": "", "dataStatus": null, @@ -1905,10 +1905,10 @@ var DATA = [ }, "schema:ItemList": { "Swab": { - "ontology_id": "OBI_0002600" + "ontology_id": "OBI:0002600" }, "RNA": { - "ontology_id": "OBI_0000880" + "ontology_id": "OBI:0000880" }, "mRNA (cDNA)": { "ontology_id": "OBI:0002754" @@ -1924,7 +1924,7 @@ var DATA = [ { "fieldName": "NML related specimen relationship type", "capitalize": "", - "ontology_id": "GENEPIO_0001209", + "ontology_id": "GENEPIO:0001209", "datatype": "select", "source": "", "dataStatus": null, @@ -1946,12 +1946,12 @@ var DATA = [ }, "schema:ItemList": { "Acute": { - "ontology_id": "HP_0011009" + "ontology_id": "HP:0011009" }, "Convalescent": {}, "Familial": {}, "Follow-up": { - "ontology_id": "EFO_0009642" + "ontology_id": "EFO:0009642" }, "Previously Submitted": {} } @@ -1959,7 +1959,7 @@ var DATA = [ { "fieldName": "anatomical material", "capitalize": "", - "ontology_id": "GENEPIO_0001211", + "ontology_id": "GENEPIO:0001211", "datatype": "select", "source": "", "dataStatus": [ @@ -2007,40 +2007,40 @@ var DATA = [ }, "schema:ItemList": { "Blood": { - "ontology_id": "UBERON_0000178" + "ontology_id": "UBERON:0000178" }, "Fluid": { - "ontology_id": "UBERON_0006314", + "ontology_id": "UBERON:0006314", "schema:ItemList": { "Saliva": { - "ontology_id": "UBERON_0001836" + "ontology_id": "UBERON:0001836" }, "Fluid (cerebrospinal (CSF))": { - "ontology_id": "UBERON_0001359" + "ontology_id": "UBERON:0001359" }, "Fluid (pericardial)": { - "ontology_id": "UBERON_0002409" + "ontology_id": "UBERON:0002409" }, "Fluid (pleural)": { - "ontology_id": "UBERON_0001087" + "ontology_id": "UBERON:0001087" }, "Fluid (vaginal)": { - "ontology_id": "UBERON_0036243" + "ontology_id": "UBERON:0036243" }, "Fluid (amniotic)": { - "ontology_id": "UBERON_0000173" + "ontology_id": "UBERON:0000173" } } }, "Tissue": { - "ontology_id": "UBERON_0000479" + "ontology_id": "UBERON:0000479" } } }, { "fieldName": "anatomical part", "capitalize": "", - "ontology_id": "GENEPIO_0001214", + "ontology_id": "GENEPIO:0001214", "datatype": "select", "source": "", "dataStatus": [ @@ -2088,85 +2088,85 @@ var DATA = [ }, "schema:ItemList": { "Anus": { - "ontology_id": "UBERON_0001245" + "ontology_id": "UBERON:0001245" }, "Buccal mucosa": { - "ontology_id": "UBERON_0006956 " + "ontology_id": "UBERON:0006956 " }, "Duodenum": { - "ontology_id": "UBERON_0002114" + "ontology_id": "UBERON:0002114" }, "Eye": { - "ontology_id": "UBERON_0000970" + "ontology_id": "UBERON:0000970" }, "Intestine": {}, "Rectum": { - "ontology_id": "UBERON_0001052" + "ontology_id": "UBERON:0001052" }, "Skin": { - "ontology_id": "UBERON_0001003" + "ontology_id": "UBERON:0001003" }, "Stomach": { - "ontology_id": "UBERON_0000945" + "ontology_id": "UBERON:0000945" }, "Upper respiratory tract": { - "ontology_id": "UBERON_0001557", + "ontology_id": "UBERON:0001557", "schema:ItemList": { "Anterior Nares": { - "ontology_id": "UBERON_2001427" + "ontology_id": "UBERON:2001427" }, "Esophagus": { - "ontology_id": "UBERON_0001043" + "ontology_id": "UBERON:0001043" }, "Ethmoid sinus": { - "ontology_id": "UBERON_0002453" + "ontology_id": "UBERON:0002453" }, "Nasal Cavity": { - "ontology_id": "UBERON_0001707 ", + "ontology_id": "UBERON:0001707 ", "schema:ItemList": { "Middle Nasal Turbinate": { - "ontology_id": "UBERON_0005921 " + "ontology_id": "UBERON:0005921 " }, "Inferior Nasal Turbinate": { - "ontology_id": "UBERON_0005922" + "ontology_id": "UBERON:0005922" } } }, "Nasopharynx (NP)": { - "ontology_id": "UBERON_0001728" + "ontology_id": "UBERON:0001728" }, "Oropharynx (OP)": { - "ontology_id": "UBERON_0001729" + "ontology_id": "UBERON:0001729" } } }, "Lower respiratory tract": { - "ontology_id": "UBERON_0001558", + "ontology_id": "UBERON:0001558", "schema:ItemList": { "Bronchus": { - "ontology_id": "UBERON_0002185 " + "ontology_id": "UBERON:0002185 " }, "Lung": { - "ontology_id": "UBERON_0002048", + "ontology_id": "UBERON:0002048", "schema:ItemList": { "Bronchiole": { - "ontology_id": "UBERON_0002186" + "ontology_id": "UBERON:0002186" }, "Alveolar sac": { - "ontology_id": "UBERON_0002169" + "ontology_id": "UBERON:0002169" } } }, "Pleural sac": { - "ontology_id": "UBERON_0009778 ", + "ontology_id": "UBERON:0009778 ", "schema:ItemList": { "Pleural cavity": { - "ontology_id": "UBERON_0002402" + "ontology_id": "UBERON:0002402" } } }, "Trachea": { - "ontology_id": "UBERON_0003126" + "ontology_id": "UBERON:0003126" } } } @@ -2175,7 +2175,7 @@ var DATA = [ { "fieldName": "body product", "capitalize": "", - "ontology_id": "GENEPIO_0001216", + "ontology_id": "GENEPIO:0001216", "datatype": "select", "source": "", "dataStatus": [ @@ -2223,37 +2223,37 @@ var DATA = [ }, "schema:ItemList": { "Feces": { - "ontology_id": "UBERON_0001988" + "ontology_id": "UBERON:0001988" }, "Urine": { - "ontology_id": "UBERON_0001088" + "ontology_id": "UBERON:0001088" }, "Sweat": { - "ontology_id": "UBERON_0001089" + "ontology_id": "UBERON:0001089" }, "Mucus": { - "ontology_id": "UBERON_0000912", + "ontology_id": "UBERON:0000912", "schema:ItemList": { "Sputum": { - "ontology_id": "UBERON_0007311" + "ontology_id": "UBERON:0007311" } } }, "Tear": { - "ontology_id": "UBERON_0001827" + "ontology_id": "UBERON:0001827" }, "Fluid (seminal)": { - "ontology_id": "UBERON_0006530" + "ontology_id": "UBERON:0006530" }, "Breast Milk": { - "ontology_id": "UBERON_0001913" + "ontology_id": "UBERON:0001913" } } }, { "fieldName": "environmental material", "capitalize": "", - "ontology_id": "GENEPIO_0001223", + "ontology_id": "GENEPIO:0001223", "datatype": "select", "source": "", "dataStatus": [ @@ -2304,16 +2304,16 @@ var DATA = [ "ontology_id": "ENVO:03501208" }, "Banknote": { - "ontology_id": "ENVO_00003896" + "ontology_id": "ENVO:00003896" }, "Bed rail": { "ontology_id": "ENVO:03501209" }, "Building floor": { - "ontology_id": "ENVO_01000486" + "ontology_id": "ENVO:01000486" }, "Cloth": { - "ontology_id": "ENVO_02000058" + "ontology_id": "ENVO:02000058" }, "Control panel": { "ontology_id": "ENVO:03501210" @@ -2370,13 +2370,13 @@ var DATA = [ "ontology_id": "OBI NTR?" }, "Sewage": { - "ontology_id": "ENVO_00002018" + "ontology_id": "ENVO:00002018" }, "Sink": { - "ontology_id": "ENVO_01000990" + "ontology_id": "ENVO:01000990" }, "Soil": { - "ontology_id": "ENVO_00001998" + "ontology_id": "ENVO:00001998" }, "Stainless steel": { "ontology_id": "ENVO:03501216" @@ -2388,7 +2388,7 @@ var DATA = [ "ontology_id": "ENVO:03501218" }, "Water": { - "ontology_id": "ENVO_00002006" + "ontology_id": "ENVO:00002006" }, "Wastewater": { "ontology_id": "ENVO:00002001" @@ -2404,7 +2404,7 @@ var DATA = [ { "fieldName": "environmental site", "capitalize": "", - "ontology_id": "GENEPIO_0001232", + "ontology_id": "GENEPIO:0001232", "datatype": "select", "source": "", "dataStatus": [ @@ -2470,7 +2470,7 @@ var DATA = [ "ontology_id": "ENVO:03501121" }, "Daycare": { - "ontology_id": "ENVO_01000927" + "ontology_id": "ENVO:01000927" }, "Emergency room (ER)": { "ontology_id": "ENVO:03501144" @@ -2500,7 +2500,7 @@ var DATA = [ "ontology_id": "ENVO:03501204" }, "Production Facility": { - "ontology_id": "ENVO_01000536" + "ontology_id": "ENVO:01000536" }, "School": { "ontology_id": "ENVO:03501130" @@ -2519,7 +2519,7 @@ var DATA = [ { "fieldName": "collection device", "capitalize": "", - "ontology_id": "GENEPIO_0001234", + "ontology_id": "GENEPIO:0001234", "datatype": "select", "source": "", "dataStatus": [ @@ -2622,7 +2622,7 @@ var DATA = [ { "fieldName": "collection method", "capitalize": "", - "ontology_id": "GENEPIO_0001241", + "ontology_id": "GENEPIO:0001241", "datatype": "select", "source": "", "dataStatus": [ @@ -2749,7 +2749,7 @@ var DATA = [ { "fieldName": "collection protocol", "capitalize": "", - "ontology_id": "GENEPIO_0001243", + "ontology_id": "GENEPIO:0001243", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -2770,7 +2770,7 @@ var DATA = [ { "fieldName": "specimen processing", "capitalize": "", - "ontology_id": "GENEPIO_0001253", + "ontology_id": "GENEPIO:0001253", "datatype": "multiple", "source": "", "dataStatus": [ @@ -2813,7 +2813,7 @@ var DATA = [ { "fieldName": "lab host", "capitalize": "", - "ontology_id": "GENEPIO_0001255", + "ontology_id": "GENEPIO:0001255", "datatype": "select", "source": "", "dataStatus": [ @@ -2851,43 +2851,43 @@ var DATA = [ "ontology_id": "BTO NTR" }, "Caco2 cell line": { - "ontology_id": "BTO_0000195 " + "ontology_id": "BTO:0000195 " }, "Calu3 cell line": { - "ontology_id": "BTO_0002750" + "ontology_id": "BTO:0002750" }, "EFK3B cell line": { "ontology_id": "BTO NTR" }, "HEK293T cell line": { - "ontology_id": "BTO_0002181" + "ontology_id": "BTO:0002181" }, "HRCE cell line": { "ontology_id": "BTO NTR" }, "Huh7 cell line": { - "ontology_id": "BTO_0001950" + "ontology_id": "BTO:0001950" }, "LLCMk2 cell line": { - "ontology_id": "CLO_0007330" + "ontology_id": "CLO:0007330" }, "MDBK cell line": { - "ontology_id": "BTO_0000836 " + "ontology_id": "BTO:0000836 " }, "NHBE cell line": { - "ontology_id": "BTO_0002924" + "ontology_id": "BTO:0002924" }, "PK-15 cell line": { - "ontology_id": "BTO_0001865" + "ontology_id": "BTO:0001865" }, "RK-13 cell line": { - "ontology_id": "BTO_0002909" + "ontology_id": "BTO:0002909" }, "U251 cell line": { - "ontology_id": "BTO_0002035" + "ontology_id": "BTO:0002035" }, "Vero cell line": { - "ontology_id": "BTO_0001444 " + "ontology_id": "BTO:0001444 " }, "Vero E6 cell line": { "ontology_id": "BTO:0004755" @@ -2900,7 +2900,7 @@ var DATA = [ { "fieldName": "passage number", "capitalize": "", - "ontology_id": "GENEPIO_0001261", + "ontology_id": "GENEPIO:0001261", "datatype": "xs:nonNegativeInteger", "source": "", "dataStatus": [ @@ -2933,7 +2933,7 @@ var DATA = [ { "fieldName": "passage method", "capitalize": "", - "ontology_id": "GENEPIO_0001264", + "ontology_id": "GENEPIO:0001264", "datatype": "xs:token", "source": "", "dataStatus": [ @@ -2966,7 +2966,7 @@ var DATA = [ { "fieldName": "biomaterial extracted", "capitalize": "", - "ontology_id": "GENEPIO_0001266", + "ontology_id": "GENEPIO:0001266", "datatype": "select", "source": "", "dataStatus": [ @@ -3015,7 +3015,7 @@ var DATA = [ { "fieldName": "host (common name)", "capitalize": "", - "ontology_id": "GENEPIO_0001386", + "ontology_id": "GENEPIO:0001386", "datatype": "select", "source": "", "dataStatus": [ @@ -3045,22 +3045,22 @@ var DATA = [ }, "schema:ItemList": { "Human": { - "ontology_id": "NCBITaxon_9606" + "ontology_id": "NCBITaxon:9606" }, "Bat": { - "ontology_id": "NCBITaxon_9397" + "ontology_id": "NCBITaxon:9397" }, "Cat": { - "ontology_id": "NCBITaxon_9685" + "ontology_id": "NCBITaxon:9685" }, "Chicken": { - "ontology_id": "NCBITaxon_9031" + "ontology_id": "NCBITaxon:9031" }, "Civets": { - "ontology_id": "NCBITaxon_9673" + "ontology_id": "NCBITaxon:9673" }, "Cow": { - "ontology_id": "NCBITaxon_9913", + "ontology_id": "NCBITaxon:9913", "exportField": { "CNPHI": [ { @@ -3070,19 +3070,19 @@ var DATA = [ } }, "Dog": { - "ontology_id": "NCBITaxon_9615 " + "ontology_id": "NCBITaxon:9615 " }, "Lion": { - "ontology_id": "NCBITaxon_9689" + "ontology_id": "NCBITaxon:9689" }, "Mink": { - "ontology_id": "NCBITaxon_452646" + "ontology_id": "NCBITaxon:452646" }, "Pangolin": { - "ontology_id": "NCBITaxon_9973" + "ontology_id": "NCBITaxon:9973" }, "Pig": { - "ontology_id": "NCBITaxon_9825", + "ontology_id": "NCBITaxon:9825", "exportField": { "CNPHI": [ { @@ -3092,17 +3092,17 @@ var DATA = [ } }, "Pigeon": { - "ontology_id": "NCBITaxon_8930" + "ontology_id": "NCBITaxon:8930" }, "Tiger": { - "ontology_id": "NCBITaxon_9694" + "ontology_id": "NCBITaxon:9694" } } }, { "fieldName": "host (scientific name)", "capitalize": "", - "ontology_id": "GENEPIO_0001387", + "ontology_id": "GENEPIO:0001387", "datatype": "select", "source": "", "dataStatus": [ @@ -3142,7 +3142,7 @@ var DATA = [ }, "schema:ItemList": { "Homo sapiens": { - "ontology_id": "NCBITaxon_9606", + "ontology_id": "NCBITaxon:9606", "exportField": { "NML_LIMS": [ { @@ -3152,56 +3152,56 @@ var DATA = [ } }, "Bos taurus": { - "ontology_id": "NCBITaxon_9913" + "ontology_id": "NCBITaxon:9913" }, "Canis lupus familiaris": { - "ontology_id": "NCBITaxon_9615 " + "ontology_id": "NCBITaxon:9615 " }, "Chiroptera": { - "ontology_id": "NCBITaxon_9397" + "ontology_id": "NCBITaxon:9397" }, "Columbidae": { - "ontology_id": "NCBITaxon_8930" + "ontology_id": "NCBITaxon:8930" }, "Felis catus": { - "ontology_id": "NCBITaxon_9685" + "ontology_id": "NCBITaxon:9685" }, "Gallus gallus": { - "ontology_id": "NCBITaxon_9031" + "ontology_id": "NCBITaxon:9031" }, "Manis": { - "ontology_id": "NCBITaxon_9973" + "ontology_id": "NCBITaxon:9973" }, "Manis javanica": { - "ontology_id": "NCBITaxon_9974" + "ontology_id": "NCBITaxon:9974" }, "Neovison vison": { - "ontology_id": "NCBITaxon_452646" + "ontology_id": "NCBITaxon:452646" }, "Panthera leo": { - "ontology_id": "NCBITaxon_9689" + "ontology_id": "NCBITaxon:9689" }, "Panthera tigris": { - "ontology_id": "NCBITaxon_9694" + "ontology_id": "NCBITaxon:9694" }, "Rhinolophidae": { - "ontology_id": "NCBITaxon_58055 " + "ontology_id": "NCBITaxon:58055 " }, "Rhinolophus affinis": { - "ontology_id": "NCBITaxon_59477" + "ontology_id": "NCBITaxon:59477" }, "Sus scrofa domesticus": { - "ontology_id": "NCBITaxon_9825" + "ontology_id": "NCBITaxon:9825" }, "Viverridae": { - "ontology_id": "NCBITaxon_9673" + "ontology_id": "NCBITaxon:9673" } } }, { "fieldName": "host health state", "capitalize": "", - "ontology_id": "GENEPIO_0001388", + "ontology_id": "GENEPIO:0001388", "datatype": "select", "source": "", "dataStatus": [ @@ -3241,13 +3241,13 @@ var DATA = [ }, "schema:ItemList": { "Asymptomatic": { - "ontology_id": "NCIT_C3833" + "ontology_id": "NCIT:C3833" }, "Deceased": { - "ontology_id": "NCIT_C28554" + "ontology_id": "NCIT:C28554" }, "Healthy": { - "ontology_id": "NCIT_C115935" + "ontology_id": "NCIT:C115935" }, "Recovered": {}, "Symptomatic": {} @@ -3256,7 +3256,7 @@ var DATA = [ { "fieldName": "host health status details", "capitalize": "", - "ontology_id": "GENEPIO_0001389", + "ontology_id": "GENEPIO:0001389", "datatype": "select", "source": "", "dataStatus": [ @@ -3303,7 +3303,7 @@ var DATA = [ { "fieldName": "host health outcome", "capitalize": "", - "ontology_id": "GENEPIO_0001390", + "ontology_id": "GENEPIO:0001390", "datatype": "select", "source": "", "dataStatus": [ @@ -3341,7 +3341,7 @@ var DATA = [ { "fieldName": "host disease", "capitalize": "", - "ontology_id": "GENEPIO_0001391", + "ontology_id": "GENEPIO:0001391", "datatype": "select", "source": "", "dataStatus": [ @@ -3388,7 +3388,7 @@ var DATA = [ { "fieldName": "host age", "capitalize": "", - "ontology_id": "GENEPIO_0001392", + "ontology_id": "GENEPIO:0001392", "datatype": "xs:decimal", "source": "", "dataStatus": [ @@ -3435,7 +3435,7 @@ var DATA = [ { "fieldName": "host age unit", "capitalize": "", - "ontology_id": "GENEPIO_0001393", + "ontology_id": "GENEPIO:0001393", "datatype": "select", "source": "", "dataStatus": [ @@ -3480,7 +3480,7 @@ var DATA = [ { "fieldName": "host age bin", "capitalize": "", - "ontology_id": "GENEPIO_0001394", + "ontology_id": "GENEPIO:0001394", "datatype": "select", "source": "", "dataStatus": [ @@ -3566,7 +3566,7 @@ var DATA = [ { "fieldName": "host gender", "capitalize": "Title", - "ontology_id": "GENEPIO_0001395", + "ontology_id": "GENEPIO:0001395", "datatype": "select", "source": "", "dataStatus": [ @@ -3611,10 +3611,10 @@ var DATA = [ }, "schema:ItemList": { "Female": { - "ontology_id": "NCIT_C46110" + "ontology_id": "NCIT:C46110" }, "Male": { - "ontology_id": "NCIT_C46109" + "ontology_id": "NCIT:C46109" }, "Non-binary gender": { "ontology_id": "GSSO:000132" @@ -3632,7 +3632,7 @@ var DATA = [ { "fieldName": "host residence geo_loc name (country)", "capitalize": "", - "ontology_id": "GENEPIO_0001396", + "ontology_id": "GENEPIO:0001396", "datatype": "select", "source": "geo_loc_name (country)", "dataStatus": [ @@ -3660,7 +3660,7 @@ var DATA = [ { "fieldName": "host residence geo_loc name (state/province/territory)", "capitalize": "", - "ontology_id": "GENEPIO_0001397", + "ontology_id": "GENEPIO:0001397", "datatype": "select", "source": "geo_loc_name (state/province/territory)", "dataStatus": [ @@ -3688,7 +3688,7 @@ var DATA = [ { "fieldName": "host subject ID", "capitalize": "", - "ontology_id": "GENEPIO_0001398", + "ontology_id": "GENEPIO:0001398", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -3714,7 +3714,7 @@ var DATA = [ { "fieldName": "symptom onset date", "capitalize": "", - "ontology_id": "GENEPIO_0001399", + "ontology_id": "GENEPIO:0001399", "datatype": "xs:date", "source": "", "dataStatus": [ @@ -3746,7 +3746,7 @@ var DATA = [ { "fieldName": "signs and symptoms", "capitalize": "", - "ontology_id": "GENEPIO_0001400", + "ontology_id": "GENEPIO:0001400", "datatype": "multiple", "source": "", "dataStatus": [ @@ -3788,7 +3788,7 @@ var DATA = [ "ontology_id": "HP:0031249" }, "Hypogeusia (reduced sense of taste)": { - "ontology_id": "HP_0000224 " + "ontology_id": "HP:0000224 " } } }, @@ -3796,10 +3796,10 @@ var DATA = [ "ontology_id": "HP:0004408", "schema:ItemList": { "Anosmia (lost sense of smell)": { - "ontology_id": "HP_0000458" + "ontology_id": "HP:0000458" }, "Hyposmia (reduced sense of smell)": { - "ontology_id": "HP_0004409" + "ontology_id": "HP:0004409" } } }, @@ -3820,13 +3820,13 @@ var DATA = [ "ontology_id": "HP:0100543" }, "Coma": { - "ontology_id": "HP_0001259" + "ontology_id": "HP:0001259" }, "Confusion": { - "ontology_id": "HP_0001289", + "ontology_id": "HP:0001289", "schema:ItemList": { "Delirium (sudden severe confusion)": { - "ontology_id": "HP_0031258" + "ontology_id": "HP:0031258" } } }, @@ -3834,10 +3834,10 @@ var DATA = [ "ontology_id": "HP REQUEST" }, "Irritability": { - "ontology_id": "HP_0000737 " + "ontology_id": "HP:0000737 " }, "Loss of speech": { - "ontology_id": "HP_0002371" + "ontology_id": "HP:0002371" } } }, @@ -3845,7 +3845,7 @@ var DATA = [ "ontology_id": "HP:0011675" }, "Asthenia (generalized weakness)": { - "ontology_id": "HP_0025406" + "ontology_id": "HP:0025406" }, "Chest tightness or pressure": { "ontology_id": "HP:0031352", @@ -3856,7 +3856,7 @@ var DATA = [ } }, "Chills (sudden cold sensation)": { - "ontology_id": "HP_0025143 ", + "ontology_id": "HP:0025143 ", "exportField": { "CNPHI": [ { @@ -3869,7 +3869,7 @@ var DATA = [ "ontology_id": "HP:0030953" }, "Conjunctivitis (pink eye)": { - "ontology_id": "HP_0000509", + "ontology_id": "HP:0000509", "exportField": { "CNPHI": [ { @@ -3882,7 +3882,7 @@ var DATA = [ "ontology_id": "MP:0001867" }, "Cough": { - "ontology_id": "HP_0012735", + "ontology_id": "HP:0012735", "schema:ItemList": { "Nonproductive cough (dry cough)": { "ontology_id": "HP:0031246" @@ -3920,10 +3920,10 @@ var DATA = [ } }, "Dyspnea (breathing difficulty)": { - "ontology_id": "HP_0002094" + "ontology_id": "HP:0002094" }, "Diarrhea (watery stool)": { - "ontology_id": "HP_0002014", + "ontology_id": "HP:0002014", "exportField": { "CNPHI": [ { @@ -3936,7 +3936,7 @@ var DATA = [ "ontology_id": "MP:0031127" }, "Encephalitis (brain inflammation)": { - "ontology_id": "HP_0002383", + "ontology_id": "HP:0002383", "exportField": { "CNPHI": [ { @@ -3949,7 +3949,7 @@ var DATA = [ "ontology_id": "HP:0001298" }, "Fatigue (tiredness)": { - "ontology_id": "HP_0012378", + "ontology_id": "HP:0012378", "exportField": { "CNPHI": [ { @@ -3962,7 +3962,7 @@ var DATA = [ "ontology_id": "HP REQUEST" }, "Fever": { - "ontology_id": "HP_0001945 ", + "ontology_id": "HP:0001945 ", "schema:ItemList": { "Fever (>=38\u00b0C)": { "ontology_id": "HP REQUEST", @@ -3983,19 +3983,19 @@ var DATA = [ "ontology_id": "HP REQUEST" }, "Headache": { - "ontology_id": "HP_0002315" + "ontology_id": "HP:0002315" }, "Hemoptysis (coughing up blood)": { - "ontology_id": "HP_0002105" + "ontology_id": "HP:0002105" }, "Hypocapnia": { "ontology_id": "HP:0012417" }, "Hypotension (low blood pressure)": { - "ontology_id": "HP_0002615" + "ontology_id": "HP:0002615" }, "Hypoxemia (low blood oxygen)": { - "ontology_id": "HP_0012418", + "ontology_id": "HP:0012418", "schema:ItemList": { "Silent hypoxemia": { "ontology_id": "HP REQUEST" @@ -4009,7 +4009,7 @@ var DATA = [ "ontology_id": "NCIT:C121416" }, "Low appetite": { - "ontology_id": "HP_0004396 " + "ontology_id": "HP:0004396 " }, "Malaise (general discomfort/unease)": { "ontology_id": "HP:0033834" @@ -4018,16 +4018,16 @@ var DATA = [ "ontology_id": "HP:0031179" }, "Muscle weakness": { - "ontology_id": "HP_0001324" + "ontology_id": "HP:0001324" }, "Nasal obstruction (stuffy nose)": { - "ontology_id": "HP_0001742" + "ontology_id": "HP:0001742" }, "Nausea": { - "ontology_id": "HP_0002018" + "ontology_id": "HP:0002018" }, "Nose bleed": { - "ontology_id": "HP_0000421" + "ontology_id": "HP:0000421" }, "Otitis": { "ontology_id": "HP REQUEST" @@ -4039,10 +4039,10 @@ var DATA = [ "ontology_id": "HP:0002027" }, "Arthralgia (painful joints)": { - "ontology_id": "HP_0002829" + "ontology_id": "HP:0002829" }, "Chest pain": { - "ontology_id": "HP_0100749", + "ontology_id": "HP:0100749", "schema:ItemList": { "Pleuritic chest pain": { "ontology_id": "HP:0033771" @@ -4050,12 +4050,12 @@ var DATA = [ } }, "Myalgia (muscle pain)": { - "ontology_id": "HP_0003326" + "ontology_id": "HP:0003326" } } }, "Pharyngitis (sore throat)": { - "ontology_id": "HP_0025439" + "ontology_id": "HP:0025439" }, "Pharyngeal exudate": { "ontology_id": "HP REQUEST" @@ -4078,13 +4078,13 @@ var DATA = [ } }, "Rash": { - "ontology_id": "HP_0000988" + "ontology_id": "HP:0000988" }, "Rhinorrhea (runny nose)": { - "ontology_id": "HP_0031417" + "ontology_id": "HP:0031417" }, "Seizure": { - "ontology_id": "HP_0001250", + "ontology_id": "HP:0001250", "schema:ItemList": { "Motor seizure": { "ontology_id": "HP:0020219" @@ -4095,7 +4095,7 @@ var DATA = [ "ontology_id": "HP:0025144" }, "Slurred speech": { - "ontology_id": "HP_0001350" + "ontology_id": "HP:0001350" }, "Sneezing": { "ontology_id": "HP:0025095" @@ -4110,20 +4110,20 @@ var DATA = [ "ontology_id": "HP:0002716" }, "Tachypnea (accelerated respiratory rate)": { - "ontology_id": "HP_0002789" + "ontology_id": "HP:0002789" }, "Vertigo (dizziness)": { "ontology_id": "HP:0002321" }, "Vomiting (throwing up)": { - "ontology_id": "HP_0002013" + "ontology_id": "HP:0002013" } } }, { "fieldName": "pre-existing conditions and risk factors", "capitalize": "", - "ontology_id": "GENEPIO_0001401", + "ontology_id": "GENEPIO:0001401", "datatype": "multiple", "source": "", "dataStatus": [ @@ -4160,7 +4160,7 @@ var DATA = [ "ontology_id": "NCIT:C92743" }, "Bone marrow failure": { - "ontology_id": "NCIT_C80693" + "ontology_id": "NCIT:C80693" }, "Cancer": { "ontology_id": "MONDO:0004992", @@ -4214,7 +4214,7 @@ var DATA = [ "ontology_id": "NCIT:C45430" }, "Hypertension (high blood pressure)": { - "ontology_id": "HP_0000822" + "ontology_id": "HP:0000822" }, "Hypotension (low blood pressure)": { "ontology_id": "HP:0002615" @@ -4460,7 +4460,7 @@ var DATA = [ { "fieldName": "complications", "capitalize": "", - "ontology_id": "GENEPIO_0001402", + "ontology_id": "GENEPIO:0001402", "datatype": "multiple", "source": "", "dataStatus": [ @@ -4764,7 +4764,7 @@ var DATA = [ { "fieldName": "host vaccination status", "capitalize": "", - "ontology_id": "GENEPIO_0001404", + "ontology_id": "GENEPIO:0001404", "datatype": "select", "source": "", "dataStatus": [ @@ -4796,7 +4796,7 @@ var DATA = [ { "fieldName": "vaccine name", "capitalize": "", - "ontology_id": "GENEPIO_0001405", + "ontology_id": "GENEPIO:0001405", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -4817,7 +4817,7 @@ var DATA = [ { "fieldName": "number of vaccine doses received", "capitalize": "", - "ontology_id": "GENEPIO_0001406", + "ontology_id": "GENEPIO:0001406", "datatype": "xs:nonNegativeInteger", "source": "", "dataStatus": null, @@ -4838,7 +4838,7 @@ var DATA = [ { "fieldName": "first dose vaccination date", "capitalize": "", - "ontology_id": "GENEPIO_0001407", + "ontology_id": "GENEPIO:0001407", "datatype": "xs:date", "source": "", "dataStatus": null, @@ -4859,7 +4859,7 @@ var DATA = [ { "fieldName": "last dose vaccination date", "capitalize": "", - "ontology_id": "GENEPIO_0001408", + "ontology_id": "GENEPIO:0001408", "datatype": "xs:date", "source": "", "dataStatus": null, @@ -4885,7 +4885,7 @@ var DATA = [ { "fieldName": "location of exposure geo_loc name (country)", "capitalize": "", - "ontology_id": "GENEPIO_0001410", + "ontology_id": "GENEPIO:0001410", "datatype": "select", "source": "geo_loc_name (country)", "dataStatus": [ @@ -4913,7 +4913,7 @@ var DATA = [ { "fieldName": "destination of most recent travel (city)", "capitalize": "", - "ontology_id": "GENEPIO_0001411", + "ontology_id": "GENEPIO:0001411", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -4939,7 +4939,7 @@ var DATA = [ { "fieldName": "destination of most recent travel (state/province/territory)", "capitalize": "", - "ontology_id": "GENEPIO_0001412", + "ontology_id": "GENEPIO:0001412", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -4965,7 +4965,7 @@ var DATA = [ { "fieldName": "destination of most recent travel (country)", "capitalize": "", - "ontology_id": "GENEPIO_0001413", + "ontology_id": "GENEPIO:0001413", "datatype": "select", "source": "geo_loc_name (country)", "dataStatus": [ @@ -4998,7 +4998,7 @@ var DATA = [ { "fieldName": "most recent travel departure date", "capitalize": "", - "ontology_id": "GENEPIO_0001414", + "ontology_id": "GENEPIO:0001414", "datatype": "xs:date", "source": "", "dataStatus": [ @@ -5030,7 +5030,7 @@ var DATA = [ { "fieldName": "most recent travel return date", "capitalize": "", - "ontology_id": "GENEPIO_0001415", + "ontology_id": "GENEPIO:0001415", "datatype": "xs:date", "source": "", "dataStatus": [ @@ -5062,7 +5062,7 @@ var DATA = [ { "fieldName": "travel history", "capitalize": "", - "ontology_id": "GENEPIO_0001416", + "ontology_id": "GENEPIO:0001416", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -5075,7 +5075,7 @@ var DATA = [ "exportField": { "NML_LIMS": [ { - "field": "travel history" + "field": "PH_TRAVEL" } ] } @@ -5083,7 +5083,7 @@ var DATA = [ { "fieldName": "exposure event", "capitalize": "", - "ontology_id": "GENEPIO_0001417", + "ontology_id": "GENEPIO:0001417", "datatype": "select", "source": "", "dataStatus": [ @@ -5189,7 +5189,7 @@ var DATA = [ { "fieldName": "exposure contact level", "capitalize": "", - "ontology_id": "GENEPIO_0001418", + "ontology_id": "GENEPIO:0001418", "datatype": "select", "source": "", "dataStatus": [ @@ -5237,7 +5237,7 @@ var DATA = [ { "fieldName": "host role", "capitalize": "", - "ontology_id": "GENEPIO_0001419", + "ontology_id": "GENEPIO:0001419", "datatype": "multiple", "source": "", "dataStatus": null, @@ -5396,7 +5396,7 @@ var DATA = [ { "fieldName": "exposure setting", "capitalize": "", - "ontology_id": "GENEPIO_0001428", + "ontology_id": "GENEPIO:0001428", "datatype": "multiple", "source": "", "dataStatus": null, @@ -5415,7 +5415,7 @@ var DATA = [ }, "schema:ItemList": { "Human Exposure": { - "ontology_id": "ECTO_3000005", + "ontology_id": "ECTO:3000005", "schema:ItemList": { "Contact with Known COVID-19 Case": { "ontology_id": "ECTO NTR" @@ -5441,7 +5441,7 @@ var DATA = [ "ontology_id": "ECTO NTR?", "schema:ItemList": { "Abbatoir": { - "ontology_id": "ECTO_1000033" + "ontology_id": "ECTO:1000033" }, "Animal Rescue": { "ontology_id": "ECTO NTR" @@ -5487,7 +5487,7 @@ var DATA = [ "ontology_id": "ECTO NTR" }, "Farm": { - "ontology_id": "ECTO_1000034" + "ontology_id": "ECTO:1000034" }, "First Nations Reserve": { "ontology_id": "ECTO NTR" @@ -5511,7 +5511,7 @@ var DATA = [ "ontology_id": "ECTO NTR" }, "Hospital": { - "ontology_id": "ECTO_1000035", + "ontology_id": "ECTO:1000035", "schema:ItemList": { "Emergency Department": { "ontology_id": "ECTO NTR" @@ -5525,7 +5525,7 @@ var DATA = [ } }, "Laboratory": { - "ontology_id": "ECTO_1000036" + "ontology_id": "ECTO:1000036" }, "Long-Term Care Facility": { "ontology_id": "ECTO NTR" @@ -5556,13 +5556,13 @@ var DATA = [ "ontology_id": "ECTO NTR", "schema:ItemList": { "Camp/camping": { - "ontology_id": "ECTO_5000009" + "ontology_id": "ECTO:5000009" }, "Hiking Trail": { "ontology_id": "ECTO NTR" }, "Hunting Ground": { - "ontology_id": "ECTO_6000030" + "ontology_id": "ECTO:6000030" }, "Ski Resort": { "ontology_id": "ECTO NTR" @@ -5570,13 +5570,13 @@ var DATA = [ } }, "Petting zoo": { - "ontology_id": "ECTO_5000008" + "ontology_id": "ECTO:5000008" }, "Restaurant": { - "ontology_id": "ECTO_1000040" + "ontology_id": "ECTO:1000040" }, "Retail Store": { - "ontology_id": "ECTO_1000041" + "ontology_id": "ECTO:1000041" }, "School": { "ontology_id": "ECTO NTR" @@ -5610,10 +5610,10 @@ var DATA = [ "ontology_id": "ECTO NTR" }, "Travelled outside Province/Territory": { - "ontology_id": "GENEPIO_0001119" + "ontology_id": "GENEPIO:0001119" }, "Travelled outside Canada": { - "ontology_id": "GENEPIO_0001118" + "ontology_id": "GENEPIO:0001118" } } }, @@ -5625,7 +5625,7 @@ var DATA = [ { "fieldName": "exposure details", "capitalize": "", - "ontology_id": "GENEPIO_0001431", + "ontology_id": "GENEPIO:0001431", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -5651,7 +5651,7 @@ var DATA = [ { "fieldName": "prior SARS-CoV-2 infection", "capitalize": "", - "ontology_id": "GENEPIO_0001435", + "ontology_id": "GENEPIO:0001435", "datatype": "select", "source": "", "dataStatus": [ @@ -5683,7 +5683,7 @@ var DATA = [ { "fieldName": "prior SARS-CoV-2 infection isolate", "capitalize": "", - "ontology_id": "GENEPIO_0001436", + "ontology_id": "GENEPIO:0001436", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -5704,7 +5704,7 @@ var DATA = [ { "fieldName": "prior SARS-CoV-2 infection date", "capitalize": "", - "ontology_id": "GENEPIO_0001437", + "ontology_id": "GENEPIO:0001437", "datatype": "xs:date", "source": "", "dataStatus": null, @@ -5725,7 +5725,7 @@ var DATA = [ { "fieldName": "prior SARS-CoV-2 antiviral treatment", "capitalize": "", - "ontology_id": "GENEPIO_0001438", + "ontology_id": "GENEPIO:0001438", "datatype": "select", "source": "", "dataStatus": [ @@ -5757,7 +5757,7 @@ var DATA = [ { "fieldName": "prior SARS-CoV-2 antiviral treatment agent", "capitalize": "", - "ontology_id": "GENEPIO_0001439", + "ontology_id": "GENEPIO:0001439", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -5778,7 +5778,7 @@ var DATA = [ { "fieldName": "prior SARS-CoV-2 antiviral treatment date", "capitalize": "", - "ontology_id": "GENEPIO_0001440", + "ontology_id": "GENEPIO:0001440", "datatype": "xs:date", "source": "", "dataStatus": null, @@ -5804,7 +5804,7 @@ var DATA = [ { "fieldName": "purpose of sequencing", "capitalize": "", - "ontology_id": "GENEPIO_0001445", + "ontology_id": "GENEPIO:0001445", "datatype": "multiple", "source": "", "dataStatus": [ @@ -5850,7 +5850,15 @@ var DATA = [ "schema:ItemList": { "Priority surveillance project": { "schema:ItemList": { - "Screening for Variants of Concern (VoC)": {}, + "Screening for Variants of Concern (VoC)": { + "schema:ItemList": { + "Sample has epidemiological link to Variant of Concern (VoC)": { + "schema:ItemList": { + "Sample has epidemiological link to Omicron Variant": {} + } + } + } + }, "Longitudinal surveillance (repeat sampling of individuals)": {}, "Re-infection surveillance": {}, "Vaccine escape surveillance": {}, @@ -5881,7 +5889,7 @@ var DATA = [ } }, "Research": { - "ontology_id": "NCIT_c15429", + "ontology_id": "NCIT:c15429", "schema:ItemList": { "Viral passage experiment": {}, "Protocol testing experiment": {} @@ -5892,7 +5900,7 @@ var DATA = [ { "fieldName": "purpose of sequencing details", "capitalize": "", - "ontology_id": "GENEPIO_0001446", + "ontology_id": "GENEPIO:0001446", "datatype": "xs:token", "source": "", "dataStatus": [ @@ -5929,7 +5937,7 @@ var DATA = [ { "fieldName": "sequencing date", "capitalize": "", - "ontology_id": "GENEPIO_0001447", + "ontology_id": "GENEPIO:0001447", "datatype": "xs:date", "source": "", "dataStatus": [ @@ -5956,7 +5964,7 @@ var DATA = [ { "fieldName": "library ID", "capitalize": "", - "ontology_id": "GENEPIO_0001448", + "ontology_id": "GENEPIO:0001448", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -5977,7 +5985,7 @@ var DATA = [ { "fieldName": "amplicon size", "capitalize": "", - "ontology_id": "GENEPIO_0001449", + "ontology_id": "GENEPIO:0001449", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -5998,7 +6006,7 @@ var DATA = [ { "fieldName": "library preparation kit", "capitalize": "", - "ontology_id": "GENEPIO_0001450", + "ontology_id": "GENEPIO:0001450", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6019,7 +6027,7 @@ var DATA = [ { "fieldName": "flow cell barcode", "capitalize": "", - "ontology_id": "GENEPIO_0001451", + "ontology_id": "GENEPIO:0001451", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6040,7 +6048,7 @@ var DATA = [ { "fieldName": "sequencing instrument", "capitalize": "", - "ontology_id": "GENEPIO_0001452", + "ontology_id": "GENEPIO:0001452", "datatype": "multiple", "source": "", "dataStatus": [ @@ -6080,16 +6088,16 @@ var DATA = [ }, "schema:ItemList": { "Illumina": { - "ontology_id": "OBI_0000759", + "ontology_id": "OBI:0000759", "schema:ItemList": { "Illumina Genome Analyzer": { - "ontology_id": "OBI_0002128", + "ontology_id": "OBI:0002128", "schema:ItemList": { "Illumina Genome Analyzer II": { - "ontology_id": "OBI_0000703" + "ontology_id": "OBI:0000703" }, "Illumina Genome Analyzer IIx": { - "ontology_id": "OBI_0002000" + "ontology_id": "OBI:0002000" } } }, @@ -6106,27 +6114,27 @@ var DATA = [ "ontology_id": "OBI NTR?" }, "Illumina HiSeq X Ten": { - "ontology_id": "OBI_0002129" + "ontology_id": "OBI:0002129" } } }, "Illumina HiSeq 1000": { - "ontology_id": "OBI_0002022" + "ontology_id": "OBI:0002022" }, "Illumina HiSeq 1500": { "ontology_id": "OBI NTR?" }, "Illumina HiSeq 2000": { - "ontology_id": "OBI_0002001" + "ontology_id": "OBI:0002001" }, "Illumina HiSeq 2500": { - "ontology_id": "OBI_0002002" + "ontology_id": "OBI:0002002" }, "Illumina HiSeq 3000": { - "ontology_id": "OBI_0002048" + "ontology_id": "OBI:0002048" }, "Illumina HiSeq 4000": { - "ontology_id": "OBI_0002049" + "ontology_id": "OBI:0002049" }, "Illumina iSeq": { "ontology_id": "OBI NTR?", @@ -6140,7 +6148,7 @@ var DATA = [ "ontology_id": "OBI NTR?", "schema:ItemList": { "Illumina NovaSeq 6000": { - "ontology_id": "OBI_0002630" + "ontology_id": "OBI:0002630" } } }, @@ -6148,13 +6156,13 @@ var DATA = [ "ontology_id": "OBI NTR?" }, "Illumina MiSeq": { - "ontology_id": "OBI_0002003" + "ontology_id": "OBI:0002003" }, "Illumina NextSeq": { "ontology_id": "OBI NTR?" }, "Illumina NextSeq 500": { - "ontology_id": "OBI_0002021" + "ontology_id": "OBI:0002021" }, "Illumina NextSeq 550": { "ontology_id": "OBI NTR?" @@ -6165,19 +6173,19 @@ var DATA = [ } }, "Pacific Biosciences": { - "ontology_id": "OBI_0001856", + "ontology_id": "OBI:0001856", "schema:ItemList": { "PacBio RS": { "ontology_id": "OBI NTR?" }, "PacBio RS II": { - "ontology_id": "OBI_0002012" + "ontology_id": "OBI:0002012" }, "PacBio Sequel": { - "ontology_id": "OBI_0002632" + "ontology_id": "OBI:0002632" }, "PacBio Sequel II": { - "ontology_id": "OBI_0002633" + "ontology_id": "OBI:0002633" } } }, @@ -6185,7 +6193,7 @@ var DATA = [ "ontology_id": "OBI NTR?", "schema:ItemList": { "Ion Torrent PGM": { - "ontology_id": "GENEPIO_0001935" + "ontology_id": "GENEPIO:0001935" }, "Ion Torrent Proton": { "ontology_id": "OBI NTR?" @@ -6242,7 +6250,7 @@ var DATA = [ { "fieldName": "sequencing protocol name", "capitalize": "", - "ontology_id": "GENEPIO_0001453", + "ontology_id": "GENEPIO:0001453", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6268,7 +6276,7 @@ var DATA = [ { "fieldName": "sequencing protocol", "capitalize": "", - "ontology_id": "GENEPIO_0001454", + "ontology_id": "GENEPIO:0001454", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6294,7 +6302,7 @@ var DATA = [ { "fieldName": "sequencing kit number", "capitalize": "", - "ontology_id": "GENEPIO_0001455", + "ontology_id": "GENEPIO:0001455", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6315,7 +6323,7 @@ var DATA = [ { "fieldName": "amplicon pcr primer scheme", "capitalize": "", - "ontology_id": "GENEPIO_0001456", + "ontology_id": "GENEPIO:0001456", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6341,7 +6349,7 @@ var DATA = [ { "fieldName": "raw sequence data processing method", "capitalize": "", - "ontology_id": "GENEPIO_0001458", + "ontology_id": "GENEPIO:0001458", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6367,7 +6375,7 @@ var DATA = [ { "fieldName": "dehosting method", "capitalize": "", - "ontology_id": "GENEPIO_0001459", + "ontology_id": "GENEPIO:0001459", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6393,7 +6401,7 @@ var DATA = [ { "fieldName": "consensus sequence name", "capitalize": "", - "ontology_id": "GENEPIO_0001460", + "ontology_id": "GENEPIO:0001460", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6414,7 +6422,7 @@ var DATA = [ { "fieldName": "consensus sequence filename", "capitalize": "", - "ontology_id": "GENEPIO_0001461", + "ontology_id": "GENEPIO:0001461", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6435,7 +6443,7 @@ var DATA = [ { "fieldName": "consensus sequence filepath", "capitalize": "", - "ontology_id": "GENEPIO_0001462", + "ontology_id": "GENEPIO:0001462", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6456,7 +6464,7 @@ var DATA = [ { "fieldName": "consensus sequence software name", "capitalize": "", - "ontology_id": "GENEPIO_0001463", + "ontology_id": "GENEPIO:0001463", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6487,7 +6495,7 @@ var DATA = [ { "fieldName": "consensus sequence software version", "capitalize": "", - "ontology_id": "GENEPIO_0001469", + "ontology_id": "GENEPIO:0001469", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6518,7 +6526,7 @@ var DATA = [ { "fieldName": "breadth of coverage value", "capitalize": "", - "ontology_id": "GENEPIO_0001472", + "ontology_id": "GENEPIO:0001472", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6544,7 +6552,7 @@ var DATA = [ { "fieldName": "depth of coverage value", "capitalize": "", - "ontology_id": "GENEPIO_0001474", + "ontology_id": "GENEPIO:0001474", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6575,7 +6583,7 @@ var DATA = [ { "fieldName": "depth of coverage threshold", "capitalize": "", - "ontology_id": "GENEPIO_0001475", + "ontology_id": "GENEPIO:0001475", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6596,7 +6604,7 @@ var DATA = [ { "fieldName": "r1 fastq filename", "capitalize": "", - "ontology_id": "GENEPIO_0001476", + "ontology_id": "GENEPIO:0001476", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6617,7 +6625,7 @@ var DATA = [ { "fieldName": "r2 fastq filename", "capitalize": "", - "ontology_id": "GENEPIO_0001477", + "ontology_id": "GENEPIO:0001477", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6638,7 +6646,7 @@ var DATA = [ { "fieldName": "r1 fastq filepath", "capitalize": "", - "ontology_id": "GENEPIO_0001478", + "ontology_id": "GENEPIO:0001478", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6659,7 +6667,7 @@ var DATA = [ { "fieldName": "r2 fastq filepath", "capitalize": "", - "ontology_id": "GENEPIO_0001479", + "ontology_id": "GENEPIO:0001479", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6680,7 +6688,7 @@ var DATA = [ { "fieldName": "fast5 filename", "capitalize": "", - "ontology_id": "GENEPIO_0001480", + "ontology_id": "GENEPIO:0001480", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6701,7 +6709,7 @@ var DATA = [ { "fieldName": "fast5 filepath", "capitalize": "", - "ontology_id": "GENEPIO_0001481", + "ontology_id": "GENEPIO:0001481", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6722,7 +6730,7 @@ var DATA = [ { "fieldName": "number of base pairs sequenced", "capitalize": "", - "ontology_id": "GENEPIO_0001482", + "ontology_id": "GENEPIO:0001482", "datatype": "xs:nonNegativeInteger", "source": "", "dataStatus": null, @@ -6743,7 +6751,7 @@ var DATA = [ { "fieldName": "consensus genome length", "capitalize": "", - "ontology_id": "GENEPIO_0001483", + "ontology_id": "GENEPIO:0001483", "datatype": "xs:nonNegativeInteger", "source": "", "dataStatus": null, @@ -6764,7 +6772,7 @@ var DATA = [ { "fieldName": "Ns per 100 kbp", "capitalize": "", - "ontology_id": "GENEPIO_0001484", + "ontology_id": "GENEPIO:0001484", "datatype": "xs:decimal", "source": "", "dataStatus": null, @@ -6785,7 +6793,7 @@ var DATA = [ { "fieldName": "reference genome accession", "capitalize": "", - "ontology_id": "GENEPIO_0001485", + "ontology_id": "GENEPIO:0001485", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6811,7 +6819,7 @@ var DATA = [ { "fieldName": "bioinformatics protocol", "capitalize": "", - "ontology_id": "GENEPIO_0001489", + "ontology_id": "GENEPIO:0001489", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6847,7 +6855,7 @@ var DATA = [ { "fieldName": "lineage/clade name", "capitalize": "", - "ontology_id": "GENEPIO_0001500", + "ontology_id": "GENEPIO:0001500", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6868,7 +6876,7 @@ var DATA = [ { "fieldName": "lineage/clade analysis software name", "capitalize": "", - "ontology_id": "GENEPIO_0001501", + "ontology_id": "GENEPIO:0001501", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6889,7 +6897,7 @@ var DATA = [ { "fieldName": "lineage/clade analysis software version", "capitalize": "", - "ontology_id": "GENEPIO_0001502", + "ontology_id": "GENEPIO:0001502", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -6910,7 +6918,7 @@ var DATA = [ { "fieldName": "variant designation", "capitalize": "", - "ontology_id": "GENEPIO_0001503", + "ontology_id": "GENEPIO:0001503", "datatype": "select", "source": "", "dataStatus": [ @@ -6945,7 +6953,7 @@ var DATA = [ { "fieldName": "variant evidence", "capitalize": "", - "ontology_id": "GENEPIO_0001504", + "ontology_id": "GENEPIO:0001504", "datatype": "select", "source": "", "dataStatus": [ @@ -6970,17 +6978,17 @@ var DATA = [ }, "schema:ItemList": { "RT-qPCR": { - "ontology_id": "CIDO_0000019" + "ontology_id": "CIDO:0000019" }, "Sequencing": { - "ontology_id": "CIDO_0000027" + "ontology_id": "CIDO:0000027" } } }, { "fieldName": "variant evidence details", "capitalize": "", - "ontology_id": "GENEPIO_0001505", + "ontology_id": "GENEPIO:0001505", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -7006,7 +7014,7 @@ var DATA = [ { "fieldName": "gene name 1", "capitalize": "", - "ontology_id": "GENEPIO_0001507", + "ontology_id": "GENEPIO:0001507", "datatype": "select", "source": "", "dataStatus": [ @@ -7380,7 +7388,7 @@ var DATA = [ { "fieldName": "diagnostic pcr protocol 1", "capitalize": "", - "ontology_id": "GENEPIO_0001508", + "ontology_id": "GENEPIO:0001508", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -7394,7 +7402,7 @@ var DATA = [ { "fieldName": "diagnostic pcr Ct value 1", "capitalize": "", - "ontology_id": "GENEPIO_0001509", + "ontology_id": "GENEPIO:0001509", "datatype": "xs:decimal", "source": "", "dataStatus": [ @@ -7437,7 +7445,7 @@ var DATA = [ { "fieldName": "gene name 2", "capitalize": "", - "ontology_id": "GENEPIO_0001510", + "ontology_id": "GENEPIO:0001510", "datatype": "select", "source": "gene name 1", "dataStatus": [ @@ -7475,7 +7483,7 @@ var DATA = [ { "fieldName": "diagnostic pcr protocol 2", "capitalize": "", - "ontology_id": "GENEPIO_0001511", + "ontology_id": "GENEPIO:0001511", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -7489,7 +7497,7 @@ var DATA = [ { "fieldName": "diagnostic pcr Ct value 2", "capitalize": "", - "ontology_id": "GENEPIO_0001512", + "ontology_id": "GENEPIO:0001512", "datatype": "xs:decimal", "source": "", "dataStatus": [ @@ -7527,7 +7535,7 @@ var DATA = [ { "fieldName": "gene name 3", "capitalize": "", - "ontology_id": "GENEPIO_0001513", + "ontology_id": "GENEPIO:0001513", "datatype": "select", "source": "gene name 1", "dataStatus": [ @@ -7560,7 +7568,7 @@ var DATA = [ { "fieldName": "diagnostic pcr protocol 3", "capitalize": "", - "ontology_id": "GENEPIO_0001514", + "ontology_id": "GENEPIO:0001514", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -7574,7 +7582,7 @@ var DATA = [ { "fieldName": "diagnostic pcr Ct value 3", "capitalize": "", - "ontology_id": "GENEPIO_0001515", + "ontology_id": "GENEPIO:0001515", "datatype": "xs:decimal", "source": "", "dataStatus": [ @@ -7612,7 +7620,7 @@ var DATA = [ { "fieldName": "authors", "capitalize": "", - "ontology_id": "GENEPIO_0001517", + "ontology_id": "GENEPIO:0001517", "datatype": "xs:token", "source": "", "dataStatus": null, @@ -7643,7 +7651,7 @@ var DATA = [ { "fieldName": "DataHarmonizer provenance", "capitalize": "", - "ontology_id": "GENEPIO_0001518", + "ontology_id": "GENEPIO:0001518", "datatype": "provenance", "source": "", "dataStatus": null, diff --git a/template/canada_covid19/data.tsv b/template/canada_covid19/data.tsv index a4cf3f8b..bcce30f5 100644 --- a/template/canada_covid19/data.tsv +++ b/template/canada_covid19/data.tsv @@ -50,7 +50,7 @@ GENEPIO:0001386 Host Information host (common name) select Not Applicable; Mis GENEPIO:0001387 Host Information host (scientific name) select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access required The taxonomic, or scientific name of the host. Common name or scientific name are required if there was a host. Both can be provided, if known. Use terms from the pick lists in the template. Scientific name e.g. Homo sapiens, If the sample was environmental, put "not applicable Homo sapiens Host host (scientific name) host host (scientific name) GENEPIO:0001388 Host Information host health state select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access Health status of the host at the time of sample collection. If known, select a descriptor from the pick list provided in the template. Symptomatic Patient status Host Health State PH_HOST_HEALTH host_health_state GENEPIO:0001389 Host Information host health status details select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access Further details pertaining to the health or disease status of the host at time of collection. If known, select a descriptor from the pick list provided in the template. Hospitalized (ICU) Host Health State Details PH_HOST_HEALTH_DETAILS -GENEPIO:0001390 Host Information host disease outcome select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access Disease outcome in the host. If known, select a descriptor from the pick list provided in the template. Recovered host health outcome host_disease_outcome +GENEPIO:0001390 Host Information host health outcome select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access Disease outcome in the host. If known, select a descriptor from the pick list provided in the template. Recovered host health outcome host_disease_outcome GENEPIO:0001391 Host Information host disease select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access required The name of the disease experienced by the host. Select "COVID-19" from the pick list provided in the template. COVID-19 Host Disease PH_HOST_DISEASE host_disease host disease GENEPIO:0001392 Host Information host age xs:decimal Not Applicable; Missing; Not Collected; Not Provided; Restricted Access required 0 130 Age of host at the time of sampling. Enter the age of the host in years. If not available, provide a null value. If there is not host, put "Not Applicable". 79 Patient age Patient Age PH_AGE host_age host age GENEPIO:0001393 Host Information host age unit select Not Applicable; Missing; Not Collected; Not Provided; Restricted Access required The unit used to measure the host age, in either months or years. Indicate whether the host age is in months or years. Age indicated in months will be binned to the 0 - 9 year age bin. years Age Units PH_AGE_UNIT host age unit