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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(print,psupertime)
export(double_psupertime)
export(plot_double_psupertime)
export(plot_double_psupertime_confusion)
export(plot_double_psupertime_contour)
export(plot_double_psupertime_genes)
export(plot_go_results)
export(plot_heatmap_of_gene_clusters)
export(plot_identified_gene_coefficients)
export(plot_identified_genes_over_psupertime)
export(plot_labels_over_psupertime)
export(plot_new_data_over_psupertime)
export(plot_predictions_against_classes)
export(plot_profiles_of_gene_clusters)
export(plot_specified_genes_over_psupertime)
export(plot_train_results)
export(project_onto_psupertime)
export(psupertime)
export(psupertime_go_analysis)
export(psupertime_plot_all)
import(data.table)
importFrom(Matrix,rowMeans)
importFrom(Matrix,t)
importFrom(RColorBrewer,brewer.pal)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(cowplot,plot_grid)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,melt.data.table)
importFrom(data.table,set)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(fastcluster,hclust)
importFrom(forcats,fct_drop)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expand_limits)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bin2d)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_density2d)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_raster)
importFrom(ggplot2,geom_rug)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_colour_brewer)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_fill_distiller)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_size_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_light)
importFrom(glmnet,glmnet)
importFrom(grDevices,colorRampPalette)
importFrom(knitr,asis_output)
importFrom(scales,pretty_breaks)
importFrom(scran,modelGeneVar)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace_all)
importFrom(topGO,GenTable)
importFrom(topGO,runTest)