node.js.yml

name: Node.js CI 

on:
  push:
    branches: [ main ]
  pull_request:
    branches: [ main ]

jobs:
  build:
    runs-on: ubuntu-latest

    strategy:
      matrix:
        node-version: [20]  # Specify Node.js 20

    steps:
    - name: Checkout repository
      uses: actions/checkout@v3

    - name: Setup Node.js
      uses: actions/setup-node@v3
      with:
        node-version: ${{ matrix.node-version }}
    
    - name: Install dependencies
      run: npm install

    - name: Compile TypeScript
      run: npx tsc

    - name: Run tests
      run: npm test

  deploy:
    runs-on: ubuntu-latest
    needs: build
    if: github.event_name == 'push' && github.ref == 'refs/heads/main'

    strategy:
      matrix:
        node-version: [20]  # Specify Node.js 20

    steps:
      - name: Checkout repository
        uses: actions/checkout@v3

      - name: Setup Node.js
        uses: actions/setup-node@v3
        with:
          node-version: ${{ matrix.node-version }}

      - name: Install dependencies
        run: npm install

      - name: Compile TypeScript
        run: npx tsc

      - name: Authenticate to Google Cloud for clingen-swc
        uses: google-github-actions/auth@v1
        with:
          credentials_json: ${{ secrets.GCP_SA_KEY }}

      - name: Setup Google Cloud SDK
        uses: google-github-actions/setup-gcloud@v1
        with:
          version: 'latest'

      - name: Copy javascript functions that are referenced by scripts to Google Cloud Storage
        run: |
          gsutil cp -r ./dist/* gs://clinvar-ingest/bq-tools
      
      - name: Execute clingen-stage BigQuery Function Scripts
        run: |
          echo "Executing BigQuery function scripts for clingen-stage in alphabetical order..."
          for file in $(find ./scripts -type f -name '*-func.sql' | sort); do
            echo "Executing $file..."
            bq query --use_legacy_sql=false --project_id=$PROJECT_ID < "$file"
          done
        env:
          PROJECT_ID: 'clingen-stage'
    
      - name: Execute clingen-dev BigQuery Function Scripts
        run: |
          echo "Executing BigQuery function scripts for clingen-stage in alphabetical order..."
          for file in $(find ./scripts -type f -name '*-func.sql' | sort); do
            echo "Executing $file..."
            bq query --use_legacy_sql=false --project_id=$PROJECT_ID < "$file"
          done
        env:
          PROJECT_ID: 'clingen-dev'

      - name: Execute clingen-dev BigQuery Procedure Scripts
        run: |
          echo "Executing BigQuery procedure scripts for clingen-stage in alphabetical order..."
          for file in $(find ./scripts -type f -name '*-proc.sql' | sort); do
            echo "Executing $file..."
            bq query --use_legacy_sql=false --project_id=$PROJECT_ID < "$file"
          done
        env:
          PROJECT_ID: 'clingen-dev'