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When using CompGenObjects, the initial runtime for a full file can take up to 5 minutes.
Solution:
In order to speed this up, it would be good to add the entire csv file to a database as is. After CompGenObjects has created its pre/post blast dictionaries, it would be good to store these there too. The duplicates dictionary takes the longest amount of time.
The text was updated successfully, but these errors were encountered:
grabear
changed the title
Use sqlite database for Master Accession file.
Re-address the current was that the various Orthologs modules handle the data/databases.
May 20, 2019
grabear
changed the title
Re-address the current was that the various Orthologs modules handle the data/databases.
Re-address the current ways that the various Orthologs modules handle the data/databases.
May 20, 2019
Problem:
When using CompGenObjects, the initial runtime for a full file can take up to 5 minutes.
Solution:
In order to speed this up, it would be good to add the entire csv file to a database as is. After CompGenObjects has created its pre/post blast dictionaries, it would be good to store these there too. The duplicates dictionary takes the longest amount of time.
The text was updated successfully, but these errors were encountered: