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bad base: _ at site 1 of species 1 #2

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lly1214 opened this issue Jun 8, 2022 · 0 comments
Open

bad base: _ at site 1 of species 1 #2

lly1214 opened this issue Jun 8, 2022 · 0 comments

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@lly1214
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lly1214 commented Jun 8, 2022

29 57979918
GCA_000005 OOVIISSS AAIEESSTAT TGGTTTGATT TGTTTTTTGT TCGTTAAAAC CCTTGTACCC
GCA_000298 _OOARR___V AAAAATTAGA AGGTTTAATT TGCCCCTTAA ACCCCTTTGT AAGGCACCCC
GCA_000765 _OOORRIIIT AATGGTTTAT TGGAAAATTT TCCCAAAACC CCCGGTTTAA AGAACGGCCG
GCA_001039 _AASMMVVVT AATGGTTTAT TGGAAAATTT TCCCAAAACC CCCGGTTTAA AGAACGGCCG

This is my outfile from seqboot, and i tend to regard it as the input to the dnadist. I met the error:

ERROR: bad base: _ at site 1 of species 1

Why dnadist can not recognize the output format of seqboot? Is there any solution to solve this problem?
Thank you very much!
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