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schema_rev223.sql
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--
-- ------------------------------------------------------
-- Server version 10.3.28-MariaDB
/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */;
/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */;
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/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
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/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `2DSA_CG_Settings` (
`2DSA_CG_SettingsID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestID` int(11) NOT NULL,
`CG_modelID` int(11) NOT NULL,
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PRIMARY KEY (`2DSA_CG_SettingsID`),
KEY `ndx_2DSA_CG_Settings_HPCAnalysisRequestID` (`HPCAnalysisRequestID`),
CONSTRAINT `fk_2DSA_CG_Settings_HPCAnalysisRequestID` FOREIGN KEY (`HPCAnalysisRequestID`) REFERENCES `HPCAnalysisRequest` (`HPCAnalysisRequestID`) ON DELETE CASCADE ON UPDATE NO ACTION
/*!40101 SET character_set_client = @saved_cs_client */;
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/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `2DSA_MW_Settings` (
`2DSA_MW_SettingsID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestID` int(11) NOT NULL,
`mw_min` double NOT NULL DEFAULT 100,
`mw_max` double NOT NULL DEFAULT 1000,
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/*!40101 SET character_set_client = @saved_cs_client */;
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/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `2DSA_Settings` (
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`s_max` double NOT NULL DEFAULT 10,
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PRIMARY KEY (`2DSA_SettingsID`),
KEY `ndx_2DSA_Settings_HPCAnalysisRequestID` (`HPCAnalysisRequestID`),
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/*!40101 SET character_set_client = @saved_cs_client */;
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/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `DMGA_Settings` (
`DMGA_SettingsID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestID` int(11) NOT NULL,
`DC_modelID` int(11) NOT NULL,
`mc_iterations` int(11) NOT NULL DEFAULT 0,
`demes` int(11) NOT NULL DEFAULT 31,
`population` int(11) NOT NULL DEFAULT 100,
`generations` int(11) NOT NULL DEFAULT 100,
`mutation` int(11) NOT NULL DEFAULT 50,
`crossover` int(11) NOT NULL DEFAULT 50,
`plague` int(11) NOT NULL DEFAULT 4,
`elitism` int(11) NOT NULL DEFAULT 2,
`migration` int(11) NOT NULL DEFAULT 3,
`p_grid` int(11) NOT NULL DEFAULT 500,
`seed` int(11) NOT NULL DEFAULT 0,
PRIMARY KEY (`DMGA_SettingsID`),
KEY `ndx_DMGA_Settings_HPCAnalysisRequestID` (`HPCAnalysisRequestID`),
CONSTRAINT `fk_DMGA_Settings_HPCAnalysisRequestID` FOREIGN KEY (`HPCAnalysisRequestID`) REFERENCES `HPCAnalysisRequest` (`HPCAnalysisRequestID`) ON DELETE CASCADE ON UPDATE NO ACTION
/*!40101 SET character_set_client = @saved_cs_client */;
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/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `GA_MW_Settings` (
`GA_MW_SettingsID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestID` int(11) NOT NULL,
`mw_min` double NOT NULL DEFAULT 100,
`mw_max` double NOT NULL DEFAULT 1000,
`oligomer` int(11) NOT NULL DEFAULT 4,
`ff0_min` double NOT NULL DEFAULT 1,
`ff0_max` double NOT NULL DEFAULT 4,
`montecarlo_value` int(11) NOT NULL DEFAULT 0,
`tinoise_option` tinyint(1) NOT NULL DEFAULT 0,
`demes_value` int(11) NOT NULL DEFAULT 31,
`genes_value` int(11) NOT NULL DEFAULT 100,
`generations_value` int(11) NOT NULL DEFAULT 100,
`crossover_value` int(11) NOT NULL DEFAULT 50,
`mutation_value` int(11) NOT NULL DEFAULT 50,
`plague_value` int(11) NOT NULL DEFAULT 4,
`elitism_value` int(11) NOT NULL DEFAULT 2,
`migration_value` int(11) NOT NULL DEFAULT 3,
`regularization_value` double NOT NULL DEFAULT 5,
`seed_value` int(11) NOT NULL DEFAULT 0,
`rinoise_option` tinyint(1) NOT NULL DEFAULT 0,
`meniscus_value` double NOT NULL DEFAULT 0,
PRIMARY KEY (`GA_MW_SettingsID`),
KEY `ndx_GA_MW_Settings_HPCAnalysisRequestID` (`HPCAnalysisRequestID`),
CONSTRAINT `fk_GA_MW_Settings_HPCAnalysisRequestID` FOREIGN KEY (`HPCAnalysisRequestID`) REFERENCES `HPCAnalysisRequest` (`HPCAnalysisRequestID`) ON DELETE CASCADE ON UPDATE NO ACTION
/*!40101 SET character_set_client = @saved_cs_client */;
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/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `GA_SC_Settings` (
`GA_SC_SettingsID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestID` int(11) NOT NULL,
`montecarlo_value` int(11) NOT NULL DEFAULT 0,
`demes_value` int(11) NOT NULL DEFAULT 31,
`genes_value` int(11) NOT NULL DEFAULT 100,
`generations_value` int(11) NOT NULL DEFAULT 100,
`crossover_value` int(11) NOT NULL DEFAULT 50,
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`plague_value` int(11) NOT NULL DEFAULT 4,
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`regularization_value` double NOT NULL DEFAULT 5,
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`tinoise_option` tinyint(1) NOT NULL DEFAULT 0,
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`meniscus_option` tinyint(1) NOT NULL DEFAULT 0,
`meniscus_value` double NOT NULL DEFAULT 0,
`constraint_data` mediumtext DEFAULT NULL,
PRIMARY KEY (`GA_SC_SettingsID`),
KEY `ndx_GA_SC_Settings_HPCAnalysisRequestID` (`HPCAnalysisRequestID`),
CONSTRAINT `fk_GA_SC_Settings_HPCAnalysisRequestID` FOREIGN KEY (`HPCAnalysisRequestID`) REFERENCES `HPCAnalysisRequest` (`HPCAnalysisRequestID`) ON DELETE CASCADE ON UPDATE NO ACTION
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/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `GA_Settings` (
`GA_SettingsID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestID` int(11) NOT NULL,
`montecarlo_value` int(11) NOT NULL DEFAULT 0,
`demes_value` int(11) NOT NULL DEFAULT 31,
`genes_value` int(11) NOT NULL DEFAULT 100,
`generations_value` int(11) NOT NULL DEFAULT 100,
`crossover_value` int(11) NOT NULL DEFAULT 50,
`mutation_value` int(11) NOT NULL DEFAULT 50,
`plague_value` int(11) NOT NULL DEFAULT 4,
`elitism_value` int(11) NOT NULL DEFAULT 2,
`migration_value` int(11) NOT NULL DEFAULT 3,
`regularization_value` double NOT NULL DEFAULT 5,
`seed_value` int(11) NOT NULL DEFAULT 0,
`conc_threshold` float NOT NULL DEFAULT 0.000001,
`s_grid` int(11) NOT NULL DEFAULT 100,
`k_grid` int(11) NOT NULL DEFAULT 100,
`mutate_sigma` float NOT NULL DEFAULT 2,
`mutate_s` int(11) NOT NULL DEFAULT 20,
`mutate_k` int(11) NOT NULL DEFAULT 20,
`mutate_sk` int(11) NOT NULL DEFAULT 20,
PRIMARY KEY (`GA_SettingsID`),
KEY `ndx_GA_Settings_HPCAnalysisRequestID` (`HPCAnalysisRequestID`),
CONSTRAINT `fk_GA_Settings_HPCAnalysisRequestID` FOREIGN KEY (`HPCAnalysisRequestID`) REFERENCES `HPCAnalysisRequest` (`HPCAnalysisRequestID`) ON DELETE CASCADE ON UPDATE NO ACTION
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `HPCAnalysisRequest`
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DROP TABLE IF EXISTS `HPCAnalysisRequest`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `HPCAnalysisRequest` (
`HPCAnalysisRequestID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestGUID` char(36) NOT NULL,
`investigatorGUID` char(36) NOT NULL,
`submitterGUID` char(36) NOT NULL,
`email` varchar(128) DEFAULT NULL,
`experimentID` int(11) DEFAULT NULL,
`requestXMLFile` longtext DEFAULT NULL,
`editXMLFilename` varchar(255) NOT NULL DEFAULT '',
`submitTime` datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
`clusterName` varchar(80) DEFAULT NULL,
`method` enum('2DSA','2DSA_CG','2DSA_MW','GA','GA_MW','GA_SC','DMGA','PCSA') NOT NULL DEFAULT '2DSA',
`analType` text DEFAULT NULL,
PRIMARY KEY (`HPCAnalysisRequestID`)
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `HPCAnalysisResult`
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/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `HPCAnalysisResult` (
`HPCAnalysisResultID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestID` int(11) NOT NULL,
`startTime` datetime NOT NULL DEFAULT '0000-00-00 00:00:00',
`endTime` datetime DEFAULT NULL,
`queueStatus` enum('queued','failed','running','aborted','completed') DEFAULT 'queued',
`lastMessage` text DEFAULT NULL,
`updateTime` timestamp NOT NULL DEFAULT current_timestamp() ON UPDATE current_timestamp(),
`gfacID` text DEFAULT NULL,
`jobfile` text DEFAULT NULL,
`wallTime` int(11) NOT NULL DEFAULT 0,
`CPUTime` double NOT NULL DEFAULT 0,
`CPUCount` int(11) DEFAULT 0,
`mgroupcount` int(11) NOT NULL DEFAULT 1,
`max_rss` int(11) DEFAULT 0,
`calculatedData` text DEFAULT NULL,
`stderr` longtext DEFAULT NULL,
`stdout` longtext DEFAULT NULL,
PRIMARY KEY (`HPCAnalysisResultID`),
KEY `ndx_HPCAnalysisResult_HPCAnalysisRequestID` (`HPCAnalysisRequestID`),
CONSTRAINT `fk_HPCAnalysisResult_HPCAnalysisRequestID` FOREIGN KEY (`HPCAnalysisRequestID`) REFERENCES `HPCAnalysisRequest` (`HPCAnalysisRequestID`) ON DELETE CASCADE ON UPDATE NO ACTION
/*!40101 SET character_set_client = @saved_cs_client */;
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/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `HPCAnalysisResultData` (
`HPCAnalysisResultDataID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisResultID` int(11) NOT NULL,
`HPCAnalysisResultType` enum('model','noise','job_stats','mrecs','unknown') NOT NULL DEFAULT 'unknown',
`resultID` int(11) NOT NULL,
PRIMARY KEY (`HPCAnalysisResultDataID`),
KEY `ndx_HPCAnalysisResultData_HPCAnalysisResultID` (`HPCAnalysisResultID`),
CONSTRAINT `fk_HPCAnalysisResultData_HPCAnalysisResultID` FOREIGN KEY (`HPCAnalysisResultID`) REFERENCES `HPCAnalysisResult` (`HPCAnalysisResultID`) ON DELETE CASCADE ON UPDATE NO ACTION
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `HPCDataset`
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/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `HPCDataset` (
`HPCDatasetID` int(11) NOT NULL AUTO_INCREMENT,
`HPCAnalysisRequestID` int(11) NOT NULL,
`editedDataID` int(11) DEFAULT NULL,
`simpoints` int(11) DEFAULT NULL,
`band_volume` double DEFAULT NULL,
`radial_grid` tinyint(4) DEFAULT NULL,
`time_grid` tinyint(4) DEFAULT NULL,
`rotor_stretch` varchar(80) DEFAULT NULL,
PRIMARY KEY (`HPCDatasetID`),
KEY `ndx_HPCDataset_HPCAnalysisRequestID` (`HPCAnalysisRequestID`),
KEY `ndx_HPCDataset_editedDataID` (`editedDataID`),
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`editGUID` char(36) NOT NULL,
`label` varchar(80) NOT NULL DEFAULT '',
`data` longblob DEFAULT NULL,
`filename` varchar(255) NOT NULL DEFAULT '',
`comment` text DEFAULT NULL,
`lastUpdated` timestamp NOT NULL DEFAULT current_timestamp() ON UPDATE current_timestamp(),
PRIMARY KEY (`editedDataID`),
UNIQUE KEY `editGUID` (`editGUID`),
KEY `ndx_editedData_rawDataID` (`rawDataID`),
CONSTRAINT `fk_editedData_rawDataID` FOREIGN KEY (`rawDataID`) REFERENCES `rawData` (`rawDataID`) ON DELETE NO ACTION ON UPDATE CASCADE
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `experiment`
--
DROP TABLE IF EXISTS `experiment`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `experiment` (
`experimentID` int(11) NOT NULL AUTO_INCREMENT,
`projectID` int(11) DEFAULT NULL,
`runID` varchar(80) NOT NULL,
`labID` int(11) DEFAULT NULL,
`instrumentID` int(11) NOT NULL,
`operatorID` int(11) DEFAULT NULL,
`rotorID` int(11) DEFAULT NULL,
`rotorCalibrationID` int(11) DEFAULT NULL,
`experimentGUID` char(36) DEFAULT NULL,
`type` enum('velocity','equilibrium','diffusion','buoyancy','calibration','other') DEFAULT 'velocity',
`runType` enum('RA','RI','IP','FI','WA','WI','RI+IP','RI+FI','IP+FI','RI+IP+FI') DEFAULT NULL,
`dateBegin` date NOT NULL,
`runTemp` float DEFAULT NULL,
`label` varchar(80) DEFAULT NULL,
`comment` text DEFAULT NULL,
`RIProfile` longtext DEFAULT NULL,
`protocolGUID` char(36) DEFAULT NULL,
`centrifugeProtocol` text DEFAULT NULL,
`dateUpdated` timestamp NOT NULL DEFAULT current_timestamp() ON UPDATE current_timestamp(),
PRIMARY KEY (`experimentID`),
UNIQUE KEY `experimentGUID` (`experimentGUID`),
KEY `ndx_experiment_projectID` (`projectID`),
KEY `ndx_experiment_operatorID` (`operatorID`),
KEY `ndx_experiment_instrumentID` (`instrumentID`),
KEY `ndx_experiment_labID` (`labID`),
KEY `ndx_experiment_rotorID` (`rotorID`),
KEY `ndx_experiment_calibrationID` (`rotorCalibrationID`),
CONSTRAINT `fk_experiment_calibrationID` FOREIGN KEY (`rotorCalibrationID`) REFERENCES `rotorCalibration` (`rotorCalibrationID`) ON DELETE SET NULL ON UPDATE CASCADE,
CONSTRAINT `fk_experiment_instrumentID` FOREIGN KEY (`instrumentID`) REFERENCES `instrument` (`instrumentID`) ON DELETE NO ACTION ON UPDATE CASCADE,
CONSTRAINT `fk_experiment_labID` FOREIGN KEY (`labID`) REFERENCES `lab` (`labID`) ON DELETE SET NULL ON UPDATE CASCADE,
CONSTRAINT `fk_experiment_operatorID` FOREIGN KEY (`operatorID`) REFERENCES `people` (`personID`) ON DELETE SET NULL ON UPDATE CASCADE,
CONSTRAINT `fk_experiment_projectID` FOREIGN KEY (`projectID`) REFERENCES `project` (`projectID`) ON DELETE SET NULL ON UPDATE CASCADE,
CONSTRAINT `fk_experiment_rotorID` FOREIGN KEY (`rotorID`) REFERENCES `rotor` (`rotorID`) ON DELETE SET NULL ON UPDATE CASCADE
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `experimentPerson`
--
DROP TABLE IF EXISTS `experimentPerson`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `experimentPerson` (
`experimentID` int(11) NOT NULL,
`personID` int(11) NOT NULL,
KEY `ndx_experimentPerson_experimentID` (`experimentID`),
KEY `ndx_experimentPerson_personID` (`personID`),
CONSTRAINT `fk_experimentPerson_experimentID` FOREIGN KEY (`experimentID`) REFERENCES `experiment` (`experimentID`) ON DELETE CASCADE ON UPDATE CASCADE,
CONSTRAINT `fk_experimentPerson_personID` FOREIGN KEY (`personID`) REFERENCES `people` (`personID`) ON DELETE CASCADE ON UPDATE CASCADE
/*!40101 SET character_set_client = @saved_cs_client */;
--
-- Table structure for table `experimentProtocol`
--
DROP TABLE IF EXISTS `experimentProtocol`;
/*!40101 SET @saved_cs_client = @@character_set_client */;
/*!40101 SET character_set_client = utf8 */;
CREATE TABLE `experimentProtocol` (
`experimentID` int(11) NOT NULL,