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uslims_metadata_format.json
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# comments supported
{
"version" : "1.0"
,"output_dir" : "/tmp/training"
# the __XX__'s will be replaced in uslims_job_metadata.php with appropriate values
,"filename_format" : {
## the base file will be created for each dataset
"base" : "v__version__-__db__-__requestid__"
## the description file will be created once, it hold information to code/decode the training data
,"description" : "description-v__version__"
,"extension" : {
"input" : "input"
,"target" : "target"
}
}
# maximum number experiments (equivalently, datasets) in a global analysis
,"maximum_datasets" : 250
# list of fields to include in output
,"fields" : {
"input" : [
"job.cluster.@attributes.name"
,"CPUCount"
,"@attributes.method"
,"job.jobParameters.s_min.@attributes.value"
,"job.jobParameters.s_max.@attributes.value"
,"job.jobParameters.s_resolution.@attributes.value"
,"job.jobParameters.s_grid_points.@attributes.value"
,"job.jobParameters.ff0_min.@attributes.value"
,"job.jobParameters.ff0_max.@attributes.value"
,"job.jobParameters.ff0_resolution.@attributes.value"
,"job.jobParameters.ff0_grid_points.@attributes.value"
,"job.jobParameters.uniform_grid.@attributes.value"
,"job.jobParameters.mc_iterations.@attributes.value"
,"job.jobParameters.req_mgroupcount.@attributes.value"
,"job.jobParameters.tinoise_option.@attributes.value"
,"job.jobParameters.meniscus_range.@attributes.value"
,"job.jobParameters.meniscus_points.@attributes.value"
,"job.jobParameters.max_iterations.@attributes.value"
,"job.jobParameters.rinoise_option.@attributes.value"
,"job.jobParameters.demes.@attributes.value"
,"job.jobParameters.population.@attributes.value"
,"job.jobParameters.generations.@attributes.value"
,"job.jobParameters.crossover.@attributes.value"
,"job.jobParameters.mutation.@attributes.value"
,"job.jobParameters.plague.@attributes.value"
,"job.jobParameters.elitism.@attributes.value"
,"job.jobParameters.migration.@attributes.value"
,"job.jobParameters.regularization.@attributes.value"
,"job.jobParameters.seed.@attributes.value"
,"job.jobParameters.conc_threshold.@attributes.value"
,"job.jobParameters.s_grid.@attributes.value"
,"job.jobParameters.k_grid.@attributes.value"
,"job.jobParameters.mutate_sigma.@attributes.value"
,"job.jobParameters.p_mutate_s.@attributes.value"
,"job.jobParameters.p_mutate_k.@attributes.value"
,"job.jobParameters.p_mutate_sk.@attributes.value"
,"job.jobParameters.bucket_fixed.@attributes.value"
,"job.jobParameters.bucket_fixed.@attributes.fixedtype"
,"job.jobParameters.bucket_fixed.@attributes.xtype"
,"job.jobParameters.bucket_fixed.@attributes.ytype"
,"job.jobParameters.curve_type.@attributes.value"
,"job.jobParameters.solute_type.@attributes.value"
,"job.jobParameters.x_min.@attributes.value"
,"job.jobParameters.x_max.@attributes.value"
,"job.jobParameters.y_min.@attributes.value"
,"job.jobParameters.y_max.@attributes.value"
,"job.jobParameters.z_value.@attributes.value"
,"job.jobParameters.vars_count.@attributes.value"
,"job.jobParameters.gfit_iterations.@attributes.value"
,"job.jobParameters.thr_deltr_ratio.@attributes.value"
,"job.jobParameters.curves_points.@attributes.value"
,"job.jobParameters.tikreg_option.@attributes.value"
,"job.jobParameters.tikreg_alpha.@attributes.value"
]
,"target" : [
"wallTime"
,"max_rss"
,"CPUTime"
]
}
,"string_mapping" : {
"job.cluster.@attributes.name" : {
"alamo.uthscsa.edu" : 1
,"anvil.rcac.purdue.edu" : 2
,"aucserver.plantbio.lu.se" : 3
,"bcf.uthscsa.edu" : 4
,"bridges2.psc.edu" : 5
,"chinook.hs.umt.edu" : 6
,"comet.sdsc.edu" : 7
,"comet.sdsc.xsede.org" : 7
,"demeler1.uleth.ca" : 8
,"demeler3.uleth.ca" : 9
,"demeler9.uleth.ca" : 10
,"expanse.sdsc.edu" : 11
,"gordon.sdsc.edu" : 12
,"gordon.sdsc.xsede.org" : 13
,"H7-380489.ad.PSU.edu" : 14
,"jetstream.jetdomain" : 15
,"js-157-184.jetstream-cloud.org" : 16
,"js-169-137.jetstream-cloud.org" : 16
,"jureca.fz-juelich.de" : 17
,"juropa.fz-juelich.de" : 18
,"juwels.fz-juelich.de" : 19
,"login.gscc.umt.edu" : 20
,"lonestar5.tacc.teragrid.org" : 21
,"lonestar.tacc.teragrid.org" : 22
,"ls5.tacc.utexas.edu" : 21
,"ls6.tacc.utexas.edu" : 23
,"puhti.csc.fi" : 24
,"stampede2.tacc.xsede.org" : 25
,"stampede.tacc.xsede.org" : 26
,"taito.csc.fi" : 27
,"trestles.sdsc.edu" : 28
,"ultrascan.chemie.uni-konstanz.de" : 29
,"us-lims1.aalto.fi" : 30
,"us-lims2.aalto.fi" : 31
,"uslims.uleth.ca" : 10
,"uslimstest.genapp.rocks" : 32
,"BIC-AUC-1" : 33
,"BIC-AUC-1.canterbury.ac.nz" : 33
}
,"job.jobParameters.bucket_fixed.@attributes.fixedtype" : {
"" : 0
,"MW" : 1
,"vbar" : 2
,"s" : 3
,"ff0" : 4
}
,"job.jobParameters.bucket_fixed.@attributes.xtype" : {
"" : 0
,"vbar" : 1
,"ff0" : 2
,"s" : 3
,"MW" : 4
,"D" : 5
}
,"job.jobParameters.bucket_fixed.@attributes.ytype" : {
"" : 0
,"ff0" : 1
,"s" : 2
,"vbar" : 3
,"f" : 4
,"D" : 5
,"MW" : 6
}
,"job.jobParameters.curve_type.@attributes.value" : {
"DS" : 1
,"IS" : 2
,"2O" : 3
,"SL" : 4
,"HL" : 5
,"All" : 6
}
,"job.jobParameters.solute_type.@attributes.value" : {
"013.skv" : 1
,"023.swv" : 2
,"031.svk" : 3
,"032.svw" : 4
,"043.sdv" : 5
,"132.kvw" : 6
,"203.wsv" : 7
,"301.vsk" : 8
,"312.vkv" : 9
,"321.vwk" : 10
}
## @attributes.method are grouped coarsely
## all relevant parameters for training should already be in the fields->input
,"@attributes.method" : {
"2DSA" : 1
,"2DSA-CG" : 1
,"2DSA_CG" : 1
,"2DSA_CG-FB" : 1
,"2DSA_CG-FM" : 1
,"2DSA_CG-FM-IT" : 1
,"2DSA_CG-GL" : 1
,"2DSA_CG-IT" : 1
,"2DSA_CG-MC" : 1
,"2DSA-FB" : 1
,"2DSA-FB-IT" : 1
,"2DSA-FM" : 1
,"2DSA-FMB" : 1
,"2DSA-FMB-IT" : 1
,"2DSA-FM-IT" : 1
,"2DSA-FM-IT-MC" : 1
,"2DSA-GL" : 1
,"2DSA-GL-FM" : 1
,"2DSA-GL-IT" : 1
,"2DSA-GL-IT-MC" : 1
,"2DSA-GL-MC" : 1
,"2DSA-IT" : 1
,"2DSA-IT-MC" : 1
,"2DSA-MC" : 1
,"DMGA" : 2
,"DMGA-MC" : 2
,"GA" : 3
,"GA-GL" : 3
,"GA-GL-MC" : 3
,"GA-MC" : 3
,"PCSA" : 4
,"PCSA-2O" : 4
,"PCSA-2O-MC" : 4
,"PCSA-2O-TR" : 4
,"PCSA-All-TR" : 4
,"PCSA-All-TR-MC" : 4
,"PCSA-DS" : 4
,"PCSA-DS-TR" : 4
,"PCSA-GL-IS" : 4
,"PCSA-GL-IS-TR" : 4
,"PCSA-IS" : 4
,"PCSA-IS-MC" : 4
,"PCSA-IS-TR" : 4
,"PCSA-IS-TR-MC" : 4
,"PCSA-SL" : 4
,"PCSA-SL-TR" : 4
}
}
}