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pyproject.toml
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# Poetry pyproject.toml: https://python-poetry.org/docs/pyproject/
[build-system]
requires = ["poetry_core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.poetry]
name = "fake-vcf"
version = "0.2.2"
description = "A fake vcf file generator "
readme = "README.md"
authors = ["fake-vcf <endast@gmail.com>"]
license = "MIT"
repository = "https://github.com/endast/fake-vcf"
homepage = "https://github.com/endast/fake-vcf"
# Keywords description https://python-poetry.org/docs/pyproject/#keywords
keywords = [] #! Update me
# Pypi classifiers: https://pypi.org/classifiers/
classifiers = [#! Update me
"Development Status :: 3 - Alpha",
"Intended Audience :: Developers",
"Operating System :: OS Independent",
"Topic :: Software Development :: Libraries :: Python Modules",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.9",
]
[tool.poetry.scripts]
# Entry points for the package https://python-poetry.org/docs/pyproject/#scripts
"fake-vcf" = "fake_vcf.__main__:app"
[tool.poetry.dependencies]
python = "^3.9"
typer = "<0.16.0"
rich = "^13.9.4"
tqdm = "^4.67.1"
pyarrow = "^18.1.0"
[tool.poetry.dev-dependencies]
bandit = "^1.8.0"
black = { version = "^24.10.0", allow-prereleases = false }
darglint = "^1.8.1"
isort = { extras = ["colors"], version = "^5.13.2" }
pre-commit = "^4.0.1"
pydocstyle = "^6.3.0"
pylint = "^3.3.2"
pytest = "^8.3.4"
pyupgrade = "^3.19.0"
coverage = "^7.6.10"
coverage-badge = "^1.1.2"
pytest-html = "^4.0.2"
pytest-cov = "^6.0.0"
[tool.poetry.group.dev.dependencies]
bandit = "^1.8.0"
darglint = "^1.8.1"
isort = {extras = ["colors"], version = "^5.13.2"}
pre-commit = "^4.0.1"
pydocstyle = "^6.3.0"
pylint = "^3.3.2"
pytest = "^8.3.4"
pyupgrade = "^3.19.0"
coverage = "^7.6.10"
coverage-badge = "^1.1.2"
pytest-html = "^4.1.1"
pytest-cov = "^6.0.0"
black = "^24.10.0"
safety = "^3.2.11"
pytest-xdist = "^3.6.1"
pytest-random-order = "^1.1.1"
deptry = "^0.21.1"
[tool.poetry.group.bgzip]
optional = true
[tool.poetry.group.bgzip.dependencies]
biopython = "^1.84"
[tool.black]
# https://github.com/psf/black
target-version = ["py38"]
line-length = 88
color = true
exclude = '''
/(
\.git
| \.hg
| \.tox
| \.venv
| _build
| buck-out
| build
| dist
| env
| venv
)/
'''
[tool.isort]
# https://github.com/timothycrosley/isort/
py_version = 38
line_length = 88
known_typing = ["typing", "types", "typing_extensions"]
sections = ["FUTURE", "TYPING", "STDLIB", "THIRDPARTY", "FIRSTPARTY", "LOCALFOLDER"]
include_trailing_comma = true
profile = "black"
multi_line_output = 3
indent = 4
color_output = true
[tool.pytest.ini_options]
# https://docs.pytest.org/en/6.2.x/customize.html#pyproject-toml
# Directories that are not visited by pytest collector:
norecursedirs = ["hooks", "*.egg", ".eggs", "dist", "build", "docs", ".tox", ".git", "__pycache__"]
doctest_optionflags = ["NUMBER", "NORMALIZE_WHITESPACE", "IGNORE_EXCEPTION_DETAIL"]
markers = [
"generate_vcf: generate vcf tests",
"reference_import: reference import tests"
]
# Extra options:
addopts = [
"--strict-markers",
"--tb=short",
"--doctest-modules",
"--doctest-continue-on-failure",
]
[tool.coverage.run]
source = ["tests"]
[coverage.paths]
source = "fake_vcf"
[coverage.run]
branch = true
[coverage.report]
fail_under = 50
show_missing = true