paper.bib

@article{jiang1995multiple,
  title={Multiple trait analysis of genetic mapping for quantitative trait loci.},
  author={Jiang, Changjian and Zeng, Zhao-Bang},
  journal={Genetics},
  volume={140},
  number={3},
  pages={1111--1127},
  year={1995},
  publisher={Genetics Soc America},
}

@article{knott2000multitrait,
  title={Multitrait least squares for quantitative trait loci detection},
  author={Knott, Sara A and Haley, Chris S},
  journal={Genetics},
  volume={156},
  number={2},
  pages={899--911},
  year={2000},
  publisher={Genetics Soc America}
}

@article{korol1995interval,
  title={Interval mapping of quantitative trait loci employing correlated trait complexes.},
  author={Korol, Abraham B and Ronin, Yefim I and Kirzhner, Valery M},
  journal={Genetics},
  volume={140},
  number={3},
  pages={1137--1147},
  year={1995},
  publisher={Genetics Soc America}
}

@article{efron1979bootstrap,
  title={Bootstrap methods: another look at the jackknife},
  author={Efron, Bradley},
  journal={Annals of {S}tatistics},
  volume={7},
  issue={1},
  pages={1-26},
  year={1979},
  publisher={American Statistical Association},
  doi={10.1214/aos/1176344552}
}

@article{tian2016dissection,
  title={The dissection of expression quantitative trait locus hotspots},
  author={Tian, Jianan and Keller, Mark P and Broman, Aimee Teo and Kendziorski, Christina and Yandell, Brian S and Attie, Alan D and Broman, Karl W},
  journal={Genetics},
  volume={202},
  number={4},
  pages={1563--1574},
  year={2016},
  publisher={Genetics Soc America},
  doi={10.1534/genetics.115.183624}
}

@article{zhou2014efficient,
  title={Efficient multivariate linear mixed model algorithms for genome-wide association studies},
  author={Zhou, Xiang and Stephens, Matthew},
  journal={Nature Methods},
  volume={11},
  number={4},
  pages={407},
  year={2014},
  publisher={Nature Publishing Group},
  doi={10.1038/nmeth.2848}
}

@article{kang2008efficient,
  title={Efficient control of population structure in model organism association mapping},
  author={Kang, Hyun Min and Zaitlen, Noah A and Wade, Claire M and Kirby, Andrew and Heckerman, David and Daly, Mark J and Eskin, Eleazar},
  journal={Genetics},
  volume={178},
  number={3},
  pages={1709--1723},
  year={2008},
  publisher={Genetics Soc America},
  doi={10.1534/genetics.107.080101}
}

@article{boehm2019testing,
  title={Testing pleiotropy vs. {s}eparate {QTL} in multiparental populations},
  author={Boehm, Frederick J. and Chesler, Elissa J. and Yandell, Brian S. and Broman, Karl W.},
  journal={G3: Genes, Genomes, Genetics},
  year={2019},
  doi={10.1534/g3.119.400098}
  }


@article{wickham2011testthat,
  title={{testthat}: Get started with testing},
  author={Wickham, Hadley},
  journal={The R Journal},
  volume={3},
  number={1},
  pages={5--10},
  year={2011},
  doi={10.32614/rj-2011-002}
}

@article{eddelbuettel2011rcpp,
  title={{Rcpp}: Seamless {R} and {C}++ integration},
  author={Eddelbuettel, Dirk and Fran{\c{c}}ois, Romain and Allaire, J and Ushey, Kevin and Kou, Qiang and Russel, N and Chambers, John and Bates, D},
  journal={Journal of Statistical Software},
  volume={40},
  number={8},
  pages={1--18},
  year={2011},
  doi={10.18637/jss.v040.i08}
}

@article{bates2013fast,
  title={Fast and elegant numerical linear algebra using the {RcppEigen} package},
  author={Bates, Douglas and Eddelbuettel, Dirk},
  journal={Journal of Statistical Software},
  volume={52},
  number={5},
  pages={1--24},
  year={2013},
  doi={10.18637/jss.v052.i05}
}