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README.Rmd
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---
output: github_document
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
```
# Jupyter notebooks with idiogramFISH examples (IFjupyter)
The goal of IFjupyter is to provide examples (files) to run idiogramFISH in the jupyter environment
<table>
<tr>
<th><img src="figures/colab-badge.svg"></th>
<th><img src="figures/GitHub-Mark-120px-plus.png" height=25 width=25> Github  </th>
<th><img src="figures/GitHub-Mark-120px-plus.png" height=25 width=25> Raw</th>
</tr>
<tr>
<td>
[3 Minimal examples](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/03-minimal.ipynb){target='_blank'} 
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/03-minimal.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/03-minimal.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[4 Plotting chromosomes](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/04-plotting.ipynb){target='_blank'} 
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/04-plotting.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/04-plotting.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[5 Multiple OTUs](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/05-multiple.ipynb){target='_blank'}
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/05-multiple.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/05-multiple.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[6 Changing units](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/06-units.ipynb){target='_blank'}
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/06-units.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/06-units.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[7 GISH](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/07-gish.ipynb){target='_blank'}
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/07-gish.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/07-gish.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[8 Groups](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/08-groups.ipynb){target='_blank'}
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/08-groups.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/08-groups.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[9 Circular Plots](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/09-circular.ipynb){target='_blank'}
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/09-circular.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/09-circular.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[10 Plotting alongside phylogeny](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/10-phylogeny.ipynb){target='_blank'} 
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/10-phylogeny.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/10-phylogeny.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[11 Citrus](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/11-citrushelp.ipynb){target='_blank'}
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/11-citrushelp.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/11-citrushelp.ipynb){target='_blank'}
</td>
</tr>
<tr>
<td>
[12 Human Karyotype](https://colab.research.google.com/github/fernandoroa/IFjupyter/blob/main/12-human.ipynb){target='_blank'}
</td>
<td>
[<kbd>link</kbd>](https://github.com/fernandoroa/IFjupyter/blob/main/12-human.ipynb){target='_blank'}
</td>
<td>
[<kbd> Raw</kbd>](https://github.com/fernandoroa/IFjupyter/raw/main/12-human.ipynb){target='_blank'}
</td>
</tr>
</table>