From d25e3a7cbb5265402ae95b35b81e32520599ce46 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Fri, 7 Jun 2024 14:22:54 -0400 Subject: [PATCH 1/7] Update _bookdown.yml Update the `book_filename` and `repo` within `_bookdown.yml` --- _bookdown.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/_bookdown.yml b/_bookdown.yml index 9ee5edb4..0012c399 100644 --- a/_bookdown.yml +++ b/_bookdown.yml @@ -1,6 +1,6 @@ -book_filename: "Course_Name" +book_filename: "AI for Efficient Programming" chapter_name: "Chapter " -repo: https://github.com/fhdsl/AI_for_software +repo: https://github.com/fhdsl/AI_for_Efficient_Programming rmd_files: ["index.Rmd", "01-intro.Rmd", "02-ethics.Rmd", From b2f92af34585b6528f4259840e5bff6b66b1f414 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Fri, 7 Jun 2024 15:03:47 -0400 Subject: [PATCH 2/7] Update dictionary.txt Add words flagged by most recent spell check --- resources/dictionary.txt | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/resources/dictionary.txt b/resources/dictionary.txt index 11dbf34e..fbf83309 100644 --- a/resources/dictionary.txt +++ b/resources/dictionary.txt @@ -1,7 +1,11 @@ ai +AMH analytics Anthropic AnVIL +Audiographer +Audiography +Baek bcftools BIPOC Bioconductor's @@ -9,16 +13,19 @@ bioinformatics BitMapBackend Bloomberg Bookdown +chapt chatbot chatbots ChatGPT chatGPT codebase codebases +cofunding CoPilot CodeWhisperer const Coursera +creativecommons css csv DALL @@ -27,24 +34,38 @@ datagy Datatrail DataTrail didt +DISCOVERABLE Dockerfile Dockerhub dsdt dropdown +EMH +enforceability Explainability Ehang's else's epigenetic +faq favicon +FHDaSL +FirstName fn fs +Funder +Funders GDSCN +Generis GitHub Github github GH GPT +HB +Humphries https +ies +iframe +immunities impactful IndexOutOfRangeException io @@ -53,7 +74,10 @@ itcrtraining ITN Jupyter fyi +LastName Leanpub +Licensor +LICENSOR LLaMA LLM LLM's @@ -61,11 +85,15 @@ LLMs macOS Markua mentorship +MERCHANTABILITY +Muschelli NCI NHGRI NLP OdeMethod +ODSS OpenAI's +Ormbrek ottrpal Overcomplexity Pandoc @@ -83,6 +111,8 @@ repo roadmap RStudio SageMaker +Savonen +sexualized socio str stackoverflow @@ -92,6 +122,7 @@ scalable subdisciplines suboptimal summarization +synched syntaxes tidyverse transformative @@ -101,6 +132,7 @@ UE5 vec Vec vcf +Videographer refactorings reproducibility README @@ -110,4 +142,5 @@ stringr underserved uppercased wikipedia +WIPO www From c43300e9971a949c02f2dbe46bb2cdda545fd52a Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Fri, 7 Jun 2024 15:09:39 -0400 Subject: [PATCH 3/7] Update 06-understanding_other_ppl_code.Rmd Fix a broken link that pointed to old course title --- 06-understanding_other_ppl_code.Rmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/06-understanding_other_ppl_code.Rmd b/06-understanding_other_ppl_code.Rmd index 90ef832c..e5cc3356 100644 --- a/06-understanding_other_ppl_code.Rmd +++ b/06-understanding_other_ppl_code.Rmd @@ -277,7 +277,7 @@ ottrpal::include_slide("https://docs.google.com/presentation/d/1MCNeSO4aOm1iESWD -(And if you do ever run across an expression like this in your code, you can check out our chapter on [refactoring code](https://hutchdatascience.org/AI_for_software/refactoring-code.html#refactoring-code) using AI to fix it!) +(And if you do ever run across an expression like this in your code, you can check out our chapter on [refactoring code](https://hutchdatascience.org/AI_for_Efficient_Programming/refactoring-code.html#refactoring-code) using AI to fix it!) ## Limitations @@ -309,4 +309,4 @@ Chatbot tools are also limited in terms of how up-to-date their training data is * AI chatbots can also identify the coding language and version used in legacy code * Be mindful of who owns the code and what the summary will be used for when using AI to summarize someone else's code -You can view and download the Google Slides [here](https://docs.google.com/presentation/d/1ygsb4nNLEsHugrXqbeiWUm9IrfvK4Y4f8teZlQAMWNM/edit#slide=id.g29848e7ae84_1_188). \ No newline at end of file +You can view and download the Google Slides [here](https://docs.google.com/presentation/d/1ygsb4nNLEsHugrXqbeiWUm9IrfvK4Y4f8teZlQAMWNM/edit#slide=id.g29848e7ae84_1_188). From b7dd01d492d1c68cc070b48a7b5909048d4aafb9 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Fri, 7 Jun 2024 15:13:10 -0400 Subject: [PATCH 4/7] Update 02-chapter_of_course.md Removing links to a PDF that is no longer available in the docs > coursera > example chapter markdown --- docs/coursera/02-chapter_of_course.md | 14 -------------- 1 file changed, 14 deletions(-) diff --git a/docs/coursera/02-chapter_of_course.md b/docs/coursera/02-chapter_of_course.md index 71288d2b..1e27d33d 100644 --- a/docs/coursera/02-chapter_of_course.md +++ b/docs/coursera/02-chapter_of_course.md @@ -123,20 +123,6 @@ OR this works: -### Links to files - -This works: - - - -Or this: - -[This works](https://www.messiah.edu/download/downloads/id/921/Microaggressions_in_the_Classroom.pdf). - -Or this: - - - ### Links to websites Examples of including a website link. From 3e3d4ddd2ea9de56b2d93a59e599599ceb7f2bda Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Fri, 7 Jun 2024 15:18:12 -0400 Subject: [PATCH 5/7] Update index.Rmd Update `index.Rmd` to point to the new GitHub repo and bookdown website following the name change. Also added the coursera link --- index.Rmd | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/index.Rmd b/index.Rmd index b6ccf2ac..74827dbd 100644 --- a/index.Rmd +++ b/index.Rmd @@ -19,10 +19,10 @@ This course on efficient programming with AI explores the use of AI large langua This course is available in multiple formats which allows you to take it in the way that best suits your needs. -- The material for this course can be viewed without login requirement on this [Bookdown website](https://hutchdatascience.org/AI_for_software). This format might be most appropriate for you if you rely on screen-reader technology. +- The material for this course can be viewed without login requirement on this [Bookdown website](https://hutchdatascience.org/AI_for_Efficient_Programming). This format might be most appropriate for you if you rely on screen-reader technology. - This course can be taken for [free certification through Leanpub](https://leanpub.com/courses/fredhutch/ai_for_software). - -- Our courses are open source, you can find the [source material for this course on GitHub](https://github.com/fhdsl/AI_for_software/). +- This course can be taken on [Coursera for certification here](https://www.coursera.org/learn/ai-for-software-development) (but it is not available for free on Coursera). +- Our courses are open source, you can find the [source material for this course on GitHub](https://github.com/fhdsl/AI_for_Efficient_Programming/). - The slides for the images in the course can be found [here](https://docs.google.com/presentation/d/1MCNeSO4aOm1iESWDLOGTcx3aLEbnu8UttV0QGVAeafE/edit?usp=sharing). ## Suggested Activity Context {-} From e8b3b6a0d22dd4ea4808d69a4dfd181bb6277cf9 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Fri, 7 Jun 2024 15:21:25 -0400 Subject: [PATCH 6/7] Update README.md Point to issues in new repo following name change --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 89e9fa59..077a4658 100644 --- a/README.md +++ b/README.md @@ -4,9 +4,9 @@ This course was created from [this GitHub template](https://github.com/jhudsl/OTTR_Template). -You can see the rendered course material [here](https://hutchdatascience.org/AI_for_software/). +You can see the rendered course material [here](https://hutchdatascience.org/AI_for_Efficient_Programming/). -If you would like to contribute to this course material, please [submit an issue](https://github.com/fhdsl/AI_for_software/issues). +If you would like to contribute to this course material, please [submit an issue](https://github.com/fhdsl/AI_for_Efficient_Programming/issues). ## About this course From edb1b7e262fc2935cfbe0f76bb658e98aefd7b10 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Fri, 7 Jun 2024 18:32:19 -0400 Subject: [PATCH 7/7] remove html references and Title like AI for decision makers --- GA_Script.Rhtml | 13 +------------ 1 file changed, 1 insertion(+), 12 deletions(-) diff --git a/GA_Script.Rhtml b/GA_Script.Rhtml index 5514f27e..7f6b4ddd 100644 --- a/GA_Script.Rhtml +++ b/GA_Script.Rhtml @@ -1,11 +1,3 @@ - - - - Title - - - - - - - + \ No newline at end of file