diff --git a/.gitattributes b/.gitattributes index 687f3b11..1cd6d8ba 100644 --- a/.gitattributes +++ b/.gitattributes @@ -7,3 +7,4 @@ pixi.lock linguist-language=YAML old export-ignore ./try export-ignore ./bench export-ignore +./image_samples export-ignore diff --git a/.github/workflows/ci-pixi.yml b/.github/workflows/ci-pixi.yml new file mode 100644 index 00000000..121028e5 --- /dev/null +++ b/.github/workflows/ci-pixi.yml @@ -0,0 +1,29 @@ +name: CI Pixi + +on: + - push + - pull_request + +jobs: + tests: + runs-on: ${{ matrix.os }} + strategy: + fail-fast: false + matrix: + os: ["windows-2022", "macos-latest"] + python-version: ["3.9", "3.10", "3.11"] + defaults: + run: + shell: bash -l {0} + steps: + - uses: actions/checkout@v3 + - uses: prefix-dev/setup-pixi@v0.4.1 + with: + pixi-version: v0.11.1 + cache: false + - name: Install + run: | + pixi run install-editable + - name: Tests + run: | + pixi run test diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml new file mode 100644 index 00000000..07f84bf3 --- /dev/null +++ b/.github/workflows/wheels.yml @@ -0,0 +1,123 @@ +name: Build +on: + - push + - pull_request + +jobs: + + wheels: + runs-on: ${{ matrix.os }}-latest + strategy: + fail-fast: false + matrix: + include: + - os: ubuntu + architecture: x86_64 + # really long (2 hours), see next job wheel-ubuntu-aarch64 + # - os: ubuntu + # architecture: aarch64 + - os: macos + architecture: x86_64 + - os: macos + architecture: arm64 + - os: windows + architecture: AMD64 + steps: + - uses: actions/checkout@v4 + - uses: docker/setup-qemu-action@v2 + with: + platforms: arm64 + if: runner.os == 'Linux' && matrix.architecture == 'aarch64' + + - uses: actions/setup-python@v5 + with: + python-version: 3.x + + - name: Build wheels + uses: pypa/cibuildwheel@v2.16.5 + env: + CIBW_SKIP: pp* cp36-* cp37-* cp38-* *-musllinux* + CIBW_ARCHS: ${{ matrix.architecture }} + - uses: actions/upload-artifact@v4 + with: + name: wheel-${{ matrix.os }}-${{ matrix.architecture }} + path: wheelhouse/*.whl + + wheel-ubuntu-aarch64: + if: | + github.event_name == 'push' && + startsWith(github.ref, 'refs/tags/') + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - uses: docker/setup-qemu-action@v2 + with: + platforms: arm64 + + - uses: actions/setup-python@v5 + with: + python-version: 3.x + + - name: Build wheels + uses: pypa/cibuildwheel@v2.16.5 + env: + CIBW_SKIP: pp* cp36-* cp37-* cp38-* *-musllinux* + CIBW_ARCHS: aarch64 + - uses: actions/upload-artifact@v4 + with: + name: wheel-ubuntu-aarch64 + path: wheelhouse/*.whl + + sdist: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - run: echo ${{ github.ref }} + - run: python -m pip install build twine + - run: python -m build --sdist + - run: twine check --strict dist/* + - uses: actions/upload-artifact@v4 + with: + name: sdist + path: dist/*.tar.gz + + check-sdist: + runs-on: ubuntu-latest + needs: + - sdist + steps: + - uses: actions/download-artifact@v4 + with: + name: sdist + - uses: actions/setup-python@v5 + with: + python-version: 3.11 + - run: | + pip install pip -U + ls + pip install fluidimage-*.tar.gz -v --no-deps -C setup-args=-Dtransonic-backend=python + + pypi-publish: + name: Upload release to PyPI + if: | + github.event_name == 'push' && + startsWith(github.ref, 'refs/tags/') + needs: + - wheels + - wheel-ubuntu-aarch64 + - sdist + - check-sdist + runs-on: ubuntu-latest + environment: + name: publish + url: https://pypi.org/p/fluidimage + permissions: + id-token: write # IMPORTANT: this permission is mandatory for trusted publishing + steps: + - uses: actions/download-artifact@v4 + with: + path: dist + merge-multiple: true + - run: ls dist + - name: Publish package distributions to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 114b3d09..a5769ed8 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,5 +1,5 @@ stages: - # - pixi + - pixi - image - lint - test @@ -22,6 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BSD-3-Clause + license_family: BSD + size: 499383 + timestamp: 1693151312586 +- platform: win-64 + name: zstd + version: 1.5.5 + category: main + manager: conda + dependencies: + - libzlib >=1.2.13,<1.3.0a0 + - ucrt >=10.0.20348.0 + - vc >=14.2,<15 + - vc14_runtime >=14.29.30139 + url: https://conda.anaconda.org/conda-forge/win-64/zstd-1.5.5-h12be248_0.conda + hash: + md5: 792bb5da68bf0a6cac6a6072ecb8dbeb + sha256: d540dd56c5ec772b60e4ce7d45f67f01c6614942225885911964ea1e70bb99e3 + build: h12be248_0 + arch: x86_64 + subdir: win-64 + build_number: 0 + license: BSD-3-Clause + license_family: BSD + size: 343428 + timestamp: 1693151615801 diff --git a/pixi.toml b/pixi.toml new file mode 100644 index 00000000..392431c9 --- /dev/null +++ b/pixi.toml @@ -0,0 +1,35 @@ +[project] +name = "fluidimage" +channels = ["conda-forge"] +platforms = ["linux-64", "win-64", "osx-64"] + +[tasks] +# use as `pixi run install-editable` +install-dependencies = "pixi install" +install-editable = {cmd = "pip install -e . -v --no-build-isolation --no-deps", depends_on = ["install-dependencies"]} +test = "export OMP_NUM_THREADS=1 && pytest src -v" + +[dependencies] +python = ">=3.9,<3.11" +numpy = ">=1.26.3" +transonic = ">=0.6.1,<0.7" +fluiddyn = ">=0.5.2" +h5netcdf = ">=1.3.0" +h5py = ">=3.10.0" +matplotlib = ">=3.3" +scipy = ">=1.11.4" +# build deps +pip = ">=23.3.2" +pkg-config = ">=0.29.2" +meson-python = ">=0.15.0" +pytest = ">=8.0.0" +pytest-cov = ">=4.1.0" +coverage = ">=7.4.1" +ninja = ">=1.11.1" +meson = ">=1.3.2" +pythran = ">=0.15.0,<0.16" +ipython = ">=8.21.0,<8.22" +opencv = ">=4.8.1,<4.10" +trio = ">=0.24.0,<0.25" +dask = ">=2024.2.0,<2024.3" +pyfftw = ">=0.13.1,<0.14" diff --git a/pyproject.toml b/pyproject.toml index 2933b2e1..cdc74f96 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -75,7 +75,7 @@ ignore_package_warnings = ["ipython"] build = [ "meson-python", "numpy", - "transonic>=0.6.1", + "transonic>=0.6.2", "pythran>=0.9.7", "ninja", ] diff --git a/src/fluidimage/gui/launcher/test_launcher.py b/src/fluidimage/gui/launcher/test_launcher.py index d3dcf82e..350ada29 100644 --- a/src/fluidimage/gui/launcher/test_launcher.py +++ b/src/fluidimage/gui/launcher/test_launcher.py @@ -11,7 +11,15 @@ import_error_qt_compat = False -# For Travis where PyQt5 can't be installed (why?) +try: + import pytestqt +except ImportError: + pytestqt = False + +print(pytestqt) + + +@pytest.mark.skipif(not pytestqt, reason="ImportError pytest-qt") @pytest.mark.skipif( import_error_qt_compat, reason="ImportError matplotlib.backends.qt_compat" )