diff --git a/man/banc_upload_mesh.Rd b/man/banc_upload_mesh.Rd index 99b3dca..f2c0376 100644 --- a/man/banc_upload_mesh.Rd +++ b/man/banc_upload_mesh.Rd @@ -31,11 +31,11 @@ Invisible \code{NULL}. The function is called for it upload effect. This function uploads a mesh.obj file to a Google Cloud Storage bucket that can be accessed by BANC neuroglancer. It uses reticulate to call Python code and manages a conda environment. -} -\details{ + The underlying Python code is based on the bikinibottom package: \url{https://github.com/jasper-tms/bikini-bottom/tree/main} - +} +\details{ For this function to work the global environment variable \code{GOOGLE_APPLICATION_CREDENTIALS} to something like \code{"$HOME/.config/gcloud/legacy_credentials/firstname.secondname@gmail.com/adc.json"}. This file can be obtains by installing \code{gsutil} and running \verb{gsutil init} in the terminal. diff --git a/man/banctable_query.Rd b/man/banctable.Rd similarity index 92% rename from man/banctable_query.Rd rename to man/banctable.Rd index 62ddcd9..6c581fb 100644 --- a/man/banctable_query.Rd +++ b/man/banctable.Rd @@ -41,6 +41,10 @@ docs}.} limit directly in the \code{sql} query. By default seatable limits SQL queries to 100 rows. We increase the limit to 100000 rows by default.} +\item{base}{Character vector specifying the \code{base}} + +\item{python}{Logical. Whether to return a Python pandas DataFrame. The default of FALSE returns an R data.frame} + \item{convert}{Expert use only: Whether or not to allow the Python seatable module to process raw output from the database. This is is principally for debugging purposes. NB this imposes a requirement of seatable_api >=2.4.0.} @@ -64,13 +68,6 @@ column that can identify each row in the remote table.} \item{...}{Additional arguments passed to pbsapply which might include cl=2 to specify a number of parallel jobs to run.} -\item{base_name}{Character vector specifying the \code{base}} - -\item{workspace_id}{A numeric id specifying the workspace. Advanced use only -since we can normally figure this out from \code{base_name}.} - -\item{cached}{Whether to use a cached base object} - \item{user, pwd}{banctable user and password used by \code{banctable_set_token} to obtain a token} }