diff --git a/R/data.R b/R/data.R index d1a15a2..abdcec3 100644 --- a/R/data.R +++ b/R/data.R @@ -2,8 +2,11 @@ #' #' @name banc.surf #' @docType data -#' @description This is unsymmetrical and not a normalised version of the mesh. -#' It is the outline of the dataset in native voxel space. +#' @description `banc.surf` is unsymmetrical and not a normalised version of the mesh. +#' It is the outline of the dataset in nanometers.`banc_neuropil.surf` represents the synaptic neuropil. +#' Built from the BANC synapse coud, but not optimised to inlude 100% of bone fide presynapses. +#' `banc_neuropils.surf` contains the standard Ito et al., 2014 brain neuropil volumes transformed into BANC space. +#' `banc_al.surf` contains the standard Bates and Schlegel et al, 2021 right antennal lobe glomeruli brain neuropil volumes transformed into BANC space. #' #' @examples #' \dontrun{ @@ -25,6 +28,12 @@ #' @rdname banc.surf "banc_neck_connective.surf" +#' @rdname banc.surf +"banc_neuropils.surf" + +#' @rdname banc.surf +"banc_al.surf" + ## How it was obtained: # res <- httr::GET("https://www.googleapis.com/storage/v1/b/zetta_lee_fly_cns_001_kisuk/o/final%2Fv2%2Fvolume_meshes%2Fmeshes%2F1%3A0.drc?alt=media&neuroglancer=610000b05b6497edcf20b78f29516970") # httr::stop_for_status(res) diff --git a/data/banc_al.surf.rda b/data/banc_al.surf.rda new file mode 100644 index 0000000..324a44b Binary files /dev/null and b/data/banc_al.surf.rda differ diff --git a/data/banc_neuropils.surf.rda b/data/banc_neuropils.surf.rda new file mode 100644 index 0000000..f87ac30 Binary files /dev/null and b/data/banc_neuropils.surf.rda differ diff --git a/man/banc.surf.Rd b/man/banc.surf.Rd index 5cf906d..e95c11c 100644 --- a/man/banc.surf.Rd +++ b/man/banc.surf.Rd @@ -7,6 +7,8 @@ \alias{banc_brain_neuropil.surf} \alias{banc_vnc_neuropil.surf} \alias{banc_neck_connective.surf} +\alias{banc_neuropils.surf} +\alias{banc_al.surf} \title{Simplified tissue surface of BANC} \format{ An object of class \code{hxsurf} (inherits from \code{list}) of length 4. @@ -18,6 +20,10 @@ An object of class \code{hxsurf} (inherits from \code{list}) of length 4. An object of class \code{hxsurf} (inherits from \code{list}) of length 4. An object of class \code{hxsurf} (inherits from \code{list}) of length 4. + +An object of class \code{hxsurf} (inherits from \code{list}) of length 4. + +An object of class \code{hxsurf} of length 4. } \usage{ banc.surf @@ -29,10 +35,17 @@ banc_brain_neuropil.surf banc_vnc_neuropil.surf banc_neck_connective.surf + +banc_neuropils.surf + +banc_al.surf } \description{ -This is unsymmetrical and not a normalised version of the mesh. -It is the outline of the dataset in native voxel space. +\code{banc.surf} is unsymmetrical and not a normalised version of the mesh. +It is the outline of the dataset in nanometers.\code{banc_neuropil.surf} represents the synaptic neuropil. +Built from the BANC synapse coud, but not optimised to inlude 100\% of bone fide presynapses. +\code{banc_neuropils.surf} contains the standard Ito et al., 2014 brain neuropil volumes transformed into BANC space. +\code{banc_al.surf} contains the standard Bates and Schlegel et al, 2021 right antennal lobe glomeruli brain neuropil volumes transformed into BANC space. } \examples{ \dontrun{ diff --git a/man/bancr-package.Rd b/man/bancr-package.Rd index 95c6139..cfad73d 100644 --- a/man/bancr-package.Rd +++ b/man/bancr-package.Rd @@ -19,5 +19,10 @@ Useful links: \author{ \strong{Maintainer}: Alexnder Bates \email{alexander.shakeel.bates@gmail.com} (\href{https://orcid.org/0000-0002-1195-0445}{ORCID}) +Authors: +\itemize{ + \item Gregory Jefferis \email{jefferis@gmail.com} (\href{https://orcid.org/0000-0002-0587-9355}{ORCID}) +} + } \keyword{internal}