diff --git a/.github/workflows/main_test.yaml b/.github/workflows/main_test.yaml
index 017464a..599e12d 100644
--- a/.github/workflows/main_test.yaml
+++ b/.github/workflows/main_test.yaml
@@ -6,6 +6,22 @@ on:
       - "**"
 
 jobs:
+
+  Formatting:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Formatting using Super-Linter
+        uses: github/super-linter@v4
+        env:
+          VALIDATE_ALL_CODEBASE: false
+          DEFAULT_BRANCH: master
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          VALIDATE_SNAKEMAKE_SNAKEFMT: true
+
+
   Linting:
     runs-on: ubuntu-latest
     steps:
@@ -46,109 +62,87 @@ jobs:
         run: |
           snakemake --lint
 
+  Testing-basic:
+    runs-on: ubuntu-latest
+    depends-on: 
+      - Formatting
+      - Linting
+    steps:
+      - name: Checkout repository with submodules and LFS
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive
+          lfs: true
 
-  # Testing_ashleys_with_custom_python:
-  #   # runs-on: self-hosted
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #     - name: Checkout repository with submodules and lfs
-  #       uses: actions/checkout@v4
-  #       with:
-  #         submodules: recursive
-  #         lfs: true
-  #     - name: Setup Python
-  #       uses: actions/setup-python@v2
-  #     - name: Add Conda to system path
-  #       run: |
-  #         echo $CONDA/bin >> $GITHUB_PATH
-  #     - name: Install dependencies
-  #       run: |
-  #         conda install -c conda-forge mamba
-  #     - name: Setup snakemake
-  #       run: |
-  #         mamba install -c conda-forge -c bioconda snakemake snakemake-storage-plugin-http
-  #     - name: Run workflow
-  #       run: |
-  #         snakemake --cores 1 --software-deployment-method conda --configfile .tests/config/simple_config.yaml --conda-frontend mamba -p --verbose --debug --snakefile workflow/Snakefile
-
-  # Setting_slurm_cluster:
-  #   runs-on: ubuntu-latest
-  #   # For the action to work, you have to supply a mysql
-  #   # service as defined below.
-  #   services:
-  #     mysql:
-  #       image: mysql:8.0
-  #       env:
-  #         MYSQL_ROOT_PASSWORD: root
-  #       ports:
-  #         - "8888:3306"
-  #       options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3
-  #   steps:
-  #     - uses: actions/checkout@v3
+      - name: Pull LFS objects in submodules
+        run: git submodule foreach --recursive 'git lfs pull'
 
-  #     - uses: koesterlab/setup-slurm-action@v1
+      - name: Setup Python
+        uses: actions/setup-python@v2
 
-  #     - name: Checkout repository with submodules and lfs
-  #       uses: actions/checkout@v4
-  #       with:
-  #         submodules: recursive
-  #         lfs: true
-  #     - name: Setup Python
-  #       uses: actions/setup-python@v2
-  #     - name: Add Conda to system path
-  #       run: |
-  #         echo $CONDA/bin >> $GITHUB_PATH
-  #     - name: Install dependencies
-  #       run: |
-  #         conda install -c conda-forge mamba
-  #     - name: Setup snakemake
-  #       run: |
-  #         mamba install -c conda-forge -c bioconda snakemake snakemake-storage-plugin-http snakemake-executor-plugin-slurm
-  #     - name: Run workflow
-  #       run: |
-  #         snakemake -j 1 -c 4 --executor slurm --workflow-profile .tests/config/slurm_config/ --software-deployment-method conda --conda-frontend mamba --configfile .tests/config/simple_config.yaml -p --snakefile workflow/Snakefile
-
-  # WORK
-  # Formatting:
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #     - uses: actions/checkout@v4
+      - name: Add Conda to system path
+        run: echo "$CONDA/bin" >> $GITHUB_PATH
 
-  #     - name: Formatting
-  #       uses: github/super-linter@v4
-  #       env:
-  #         VALIDATE_ALL_CODEBASE: false
-  #         DEFAULT_BRANCH: master
-  #         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  #         VALIDATE_SNAKEMAKE_SNAKEFMT: true
+      - name: Install dependencies
+        run: conda install -c conda-forge mamba
 
-  # Linting:
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #     - uses: actions/checkout@v4
-  #     - name: Linting
-  #       uses: snakemake/snakemake-github-action@v1.24.0
-  #       with:
-  #         directory: .
-  #         snakefile: ./workflow/Snakefile
-  #         args: "--lint --config ashleys_pipeline=True"
-  # Testing_ashleys:
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #     - uses: actions/checkout@v4
-  #     - name: Testing data
-  #       uses: snakemake/snakemake-github-action@v1.24.0
-  #       with:
-  #         directory: .
-  #         snakefile: ./workflow/Snakefile
-  #         stagein: "conda config --set channel_priority flexible"
-  #         args: "--cores 1 --use-conda --configfile .tests/config/simple_config.yaml --conda-frontend mamba -p --verbose --debug"
-  #     - name: Testing report
-  #       uses: snakemake/snakemake-github-action@v1.24.0
-  #       with:
-  #         directory: .
-  #         snakefile: ./workflow/Snakefile
-  #         args: "--cores 1 --use-conda --configfile .tests/config/simple_config.yaml --conda-frontend mamba --report report.zip"
+      - name: Setup Snakemake
+        run: mamba install -c conda-forge -c bioconda snakemake snakemake-storage-plugin-http
+
+      - name: Run workflow
+        run: |
+          snakemake --cores 1 --config list_commands=True --verbose --debug
+
+      - name: Run workflow
+        run: |
+          snakemake --cores 1 --software-deployment-method conda --configfile .tests/config/simple_config.yaml \
+          --conda-frontend mamba -p --verbose --debug --snakefile workflow/Snakefile
+
+Testing-basic-with-slurm:
+  runs-on: ubuntu-latest
+  depends-on: 
+    - Formatting
+    - Linting
+    - Testing-basic
+  services:
+    mysql:
+      image: mysql:8.0
+      env:
+        MYSQL_ROOT_PASSWORD: root
+      ports:
+        - "8888:3306"
+      options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3
+
+  steps:
+    - uses: actions/checkout@v3
+
+    - uses: koesterlab/setup-slurm-action@v1
+
+    - name: Checkout repository with submodules and LFS
+      uses: actions/checkout@v4
+      with:
+        submodules: recursive
+        lfs: true
+
+    - name: Pull LFS objects in submodules
+      run: git submodule foreach --recursive 'git lfs pull'
+
+    - name: Setup Python
+      uses: actions/setup-python@v2
+
+    - name: Add Conda to system path
+      run: echo "$CONDA/bin" >> $GITHUB_PATH
+
+    - name: Install dependencies
+      run: conda install -c conda-forge mamba
+
+    - name: Setup Snakemake with SLURM support
+      run: mamba install -c conda-forge -c bioconda snakemake snakemake-executor-plugin-slurm
+
+    - name: Run workflow on SLURM
+      run: |
+        snakemake -j 1 -c 1 --executor slurm --workflow-profile .tests/config/slurm_config/ --verbose --debug \
+        --software-deployment-method conda --conda-frontend mamba --configfile .tests/config/simple_config.yaml -p --snakefile workflow/Snakefile
 
   # Testing_ashleys_fastqc_enabled:
   #   runs-on: ubuntu-latest
@@ -253,23 +247,6 @@ jobs:
   #         directory: .
   #         snakefile: ./workflow/Snakefile
   #         args: "--cores 1 --use-conda --config reference=mm10 use_light_data=True chromosomes=[chr17] --conda-frontend mamba --report report.zip"
-  # Testing_jub_nb:
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #     - uses: actions/checkout@v4
-  #     - name: Testing data
-  #       uses: snakemake/snakemake-github-action@v1.24.0
-  #       with:
-  #         directory: .
-  #         snakefile: ./workflow/Snakefile
-  #         stagein: "conda config --set channel_priority flexible"
-  #         args: "--cores 1 --use-conda --configfile .tests/config/simple_config.yaml --config hand_selection=True --conda-frontend mamba -p --verbose --debug"
-  #     - name: Testing report
-  #       uses: snakemake/snakemake-github-action@v1.24.0
-  #       with:
-  #         directory: .
-  #         snakefile: ./workflow/Snakefile
-  #         args: "--cores 1 --use-conda --configfile .tests/config/simple_config.yaml --config hand_selection=True --conda-frontend mamba --report report.zip"
   # Testing_publishdir:
   #   runs-on: ubuntu-latest
   #   steps:
@@ -287,13 +264,3 @@ jobs:
   #         directory: .
   #         snakefile: ./workflow/Snakefile
   #         args: "--cores 1 --use-conda --configfile .tests/config/simple_config.yaml --config publishdir=.tests/data_chr17_publishdir --conda-frontend mamba --report report.zip"
-  # Testing_list_commands:
-  #   runs-on: ubuntu-latest
-  #   steps:
-  #     - uses: actions/checkout@v4
-  #     - name: Testing data
-  #       uses: snakemake/snakemake-github-action@v1.24.0
-  #       with:
-  #         directory: .
-  #         snakefile: ./workflow/Snakefile
-  #         args: "--cores 1 --config list_commands=True --verbose --debug"