diff --git a/sacla/phase2.ipynb b/sacla/phase2.ipynb new file mode 100644 index 0000000..9c1b681 --- /dev/null +++ b/sacla/phase2.ipynb @@ -0,0 +1,4172 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "from sacla import *\n" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/gorkhover/anaconda3/envs/zimmf4/lib/python3.8/site-packages/idi/reconstruction/__init__.py:60: UserWarning: no cuda available\n", + " _w.warn(\"no cuda available\")\n" + ] + } + ], + "source": [ + "# %load imports.py\n", + "import matplotlib.pyplot as plt\n", + "%matplotlib inline \n", + "import numpy as np\n", + "import pandas as pd\n", + "pd.options.display.max_rows = 999\n", + "import scipy as sp\n", + "import scipy.ndimage as snd\n", + "import scipy.signal as ss\n", + "import skimage.morphology\n", + "import mkl_fft\n", + "import fast_histogram\n", + "import sys, os, datetime, shutil, glob, itertools, collections, pathlib\n", + "import h5py\n", + "from tqdm.notebook import tqdm\n", + "from pprint import pprint\n", + "import matplotlib.pyplot as plt\n", + "import matplotlib as mpl\n", + "%load_ext line_profiler\n", + "%load_ext memory_profiler\n", + "from sacla import *\n", + "from accum import *\n", + "import idi.reconstruction as recon\n", + "\n", + "\n", + "def browse(obj,depth=0):\n", + " try:\n", + " if type(obj)==h5py._hl.dataset.Dataset:\n", + " print(obj.shape,obj.dtype,end='')\n", + " if np.product(obj.shape)<10: print(np.array(obj), end='')\n", + " else:\n", + " for k in obj.keys():\n", + " print('\\n',depth*' ',k,end='')\n", + " browse(obj[k],depth+1)\n", + " print()\n", + " except Exception as e:\n", + " print(e)\n", + "\n", + "def zoom(cor):\n", + " cor[cor.shape[0]//2,cor.shape[1]//2]=np.nan\n", + " plt.matshow(cor[cor.shape[0]//2-n:cor.shape[0]//2+n,cor.shape[1]//2-n:cor.shape[1]//2+n])\n", + " \n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 44, + "metadata": {}, + "outputs": [], + "source": [ + "l=log('sacla2020.csv')" + ] + }, + { + "cell_type": "code", + "execution_count": 46, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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Run startlast runNameTargetTarget MaterialPre-Run CommentPost-Run CommentFilter OktalFilter DualDistance_DualDistance_Oktalfocus yp1p2_statsp2_thres1000p2_thres1500p2_thres2000AttDefocus
##NameIDMaterialTextTextMaterialMaterialcmcmumPathPathPathPathPathmm Siliconum
1918280918289background2NoneBackground recording. Motor is still scanning.NaNNoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
2918308918348Cu20um_focus3Cu20umNaNOn the dual there are photons with ~160ADU and...NoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
3918349918368Cu20um_defocus-5003Cu20umNaNNaNNoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
4918369918413Fe500nm_focus4Fe500nmTry 0.5um iron foil. get back into focus. Also...Diffraction visible, see SLACK. Live analysis ...NoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
5918414918456Fe500nm_defocus-2004Fe500nmmoved out of focus (-200um)foil entirely shot\\r\\nNoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
6918457918467darknonenonedark runs for detector. no FELNaNNoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
7918468918510Fe10um_focus6Fe10umNaNNaNNoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
8918511918551Fe10um_defocus-4006Fe10ummoved out of focus (-400um)NaNNoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
9918552918593Fe500nm_focus_27Fe500nmsmaller window, back in focus. will afterwards...NaNNoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
10918594918637Fe500nm_defocus+4008fe500nmmoved out of focus +400umNaNNoneNone100.043.0-210.0NaNNaNNaNNaNNaNNaNNaN
11918639918642darknothingfe500nmNaN918639,918641,918642,918665 dark after refocusingNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
12918643918646backgroundnothingfe500nmfocus has shifted. new focus position is at -1...NaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
13918647918690Cu5um_focus9Cu 5 umin focus (-160 nominal)NaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
14918692918733Cu5um_defocus-50010Cu 5 umout of focus -500 rel (-660 nom), also moved p...981704 has fewer shots - was aborte bc of beam...NoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
15918735918777Cu5um_defocus-25010Cu 5 umout of focus: -410 nominal\\r\\nNaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
16918778918814Cu5um_focus_filter11Cu5umback to focus.At the end we were on the plastic tape holding...NickelNickel100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
17918823918850Fe500nm_focus_high12Fe500nmAdjust Prof_y to skip the part where Ichiro ha...shadows on the bottom of octal. we are probabl...NoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
18918851918856?1310nmPStime to switch to nano particlessuper low photon numbers. about 1/4 compared t...NoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
19918857918857?1310nmPSNaNNaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
20918858918858?1310nmPSNaNNaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
21918859918859?1310nmPSNaNNaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
22918860918860?1310nmPSNaNlots of two photons. Dual sees photons at 7keV...NoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
23918861918861?1310nmPSdouble check photon energies on OctalOctal sees the photons between 4 and 5keV. Onl...NoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
24918862918874?1310nmPSfirst nano particle dataNaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
2591887591889410nmPS_focus_far_nofilter1310nmPSchecked the target and put it back in. nothing...NaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
2691889591892710nmPS_focus_far_nofilter1310nmPSNaNSingle photon analysis suggests the sample may...NoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
2791893091894010nmPS_-400_att_nofilter1410nmPSMove out of focus. Note the Foil is quite bentNaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
2891894191896910nmPS_-400_full_nofilter1410nmPSNaNNaNNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
2991897091900410nmPS_focus_nofilter1610nmPSmove Octal close, back to focusNaNNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
30919005919006?1720nmPSchanged the comment in the run control to \"see...probably more than enough signal. changing to ...NoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
3191900791904920nmPS_focus_nofilter1720nmPSNaNconfirmed, that the zink signal comes from the...NoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
32919050919060copolymeronly_focus_nofilter19copolymer onlybackground with FEL. PMMA in, but no nanoparti...lots of background. Maybe we recorded only bac...NoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
33919061919061?22x7 emptynonebackground with empty holder. holder motor mov...Plastic scatteres ~6 times as much as the air....NoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
3491906391909310nmCo_focus_nofilter1810nmcolopymerNaNNeed to know exact target thicknesses! Hardly ...NoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
35919094919095?19copolymer onlymake intensity dependent histogramsNaNNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
36919096919096?19copolymer onlyNaNNaNNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
37919097919097?19copolymer onlyNaNNaNNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
38919098919098?19copolymer onlyNaNNaNNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
39919100919100?2220nm copolymerchecking signal. correlations may just be visi...10 to 20 photons on dualNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
4091910191913120nmCo_-400_nofilter2220nm copolymerdefocus, full powera few 100 photons on dual\\r\\nlast couple of sh...NoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
41919132919138?20ps onlybackground for ps foil defocus, full beamNaNNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
42919139919153FeCl3PS_focus_nofilter23fecl3reference without correlationsNaNNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
43919154919159?23fecl3attn 0.4, focusNaNNoneNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
44919160919170FeCl3PS_focus23fecl3ni filter foil in front of oktallast couple of shots of run were without the s...NickelNone100.023.5-160.0NaNNaNNaNNaNNaNNaNNaN
45919171919177?20ps onlyretract oktal manually, still filterOctal: Ni peakNickelNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
46919178919178?20ps onlyremoved all attenuation, out of focusOctal: Ni peakNickelNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
47919179919179?2420 nm fe on psswitching to sample for signalOctal: Ni peakNickelNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
48919180919180?2420 nm fe on psat in, in focus, filter inOctal: Ni peakNickelNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
49919181919181?2420 nm fe on psatt in, in focus, filter outOctal: Fe peak, more 11keVNoneNone100.043.0-160.0NaNNaNNaNNaNNaNNaNNaN
\n", + "
" + ], + "text/plain": [ + " Run start last run Name Target \\\n", + " # # Name ID \n", + "1 918280 918289 background 2 \n", + "2 918308 918348 Cu20um_focus 3 \n", + "3 918349 918368 Cu20um_defocus-500 3 \n", + "4 918369 918413 Fe500nm_focus 4 \n", + "5 918414 918456 Fe500nm_defocus-200 4 \n", + "6 918457 918467 dark none \n", + "7 918468 918510 Fe10um_focus 6 \n", + "8 918511 918551 Fe10um_defocus-400 6 \n", + "9 918552 918593 Fe500nm_focus_2 7 \n", + "10 918594 918637 Fe500nm_defocus+400 8 \n", + "11 918639 918642 dark nothing \n", + "12 918643 918646 background nothing \n", + "13 918647 918690 Cu5um_focus 9 \n", + "14 918692 918733 Cu5um_defocus-500 10 \n", + "15 918735 918777 Cu5um_defocus-250 10 \n", + "16 918778 918814 Cu5um_focus_filter 11 \n", + "17 918823 918850 Fe500nm_focus_high 12 \n", + "18 918851 918856 ? 13 \n", + "19 918857 918857 ? 13 \n", + "20 918858 918858 ? 13 \n", + "21 918859 918859 ? 13 \n", + "22 918860 918860 ? 13 \n", + "23 918861 918861 ? 13 \n", + "24 918862 918874 ? 13 \n", + "25 918875 918894 10nmPS_focus_far_nofilter 13 \n", + "26 918895 918927 10nmPS_focus_far_nofilter 13 \n", + "27 918930 918940 10nmPS_-400_att_nofilter 14 \n", + "28 918941 918969 10nmPS_-400_full_nofilter 14 \n", + "29 918970 919004 10nmPS_focus_nofilter 16 \n", + "30 919005 919006 ? 17 \n", + "31 919007 919049 20nmPS_focus_nofilter 17 \n", + "32 919050 919060 copolymeronly_focus_nofilter 19 \n", + "33 919061 919061 ? 22x7 empty \n", + "34 919063 919093 10nmCo_focus_nofilter 18 \n", + "35 919094 919095 ? 19 \n", + "36 919096 919096 ? 19 \n", + "37 919097 919097 ? 19 \n", + "38 919098 919098 ? 19 \n", + "39 919100 919100 ? 22 \n", + "40 919101 919131 20nmCo_-400_nofilter 22 \n", + "41 919132 919138 ? 20 \n", + "42 919139 919153 FeCl3PS_focus_nofilter 23 \n", + "43 919154 919159 ? 23 \n", + "44 919160 919170 FeCl3PS_focus 23 \n", + "45 919171 919177 ? 20 \n", + "46 919178 919178 ? 20 \n", + "47 919179 919179 ? 24 \n", + "48 919180 919180 ? 24 \n", + "49 919181 919181 ? 24 \n", + "\n", + " Target Material Pre-Run Comment \\\n", + " Material Text \n", + "1 None Background recording. Motor is still scanning. \n", + "2 Cu20um NaN \n", + "3 Cu20um NaN \n", + "4 Fe500nm Try 0.5um iron foil. get back into focus. Also... \n", + "5 Fe500nm moved out of focus (-200um) \n", + "6 none dark runs for detector. no FEL \n", + "7 Fe10um NaN \n", + "8 Fe10um moved out of focus (-400um) \n", + "9 Fe500nm smaller window, back in focus. will afterwards... \n", + "10 fe500nm moved out of focus +400um \n", + "11 fe500nm NaN \n", + "12 fe500nm focus has shifted. new focus position is at -1... \n", + "13 Cu 5 um in focus (-160 nominal) \n", + "14 Cu 5 um out of focus -500 rel (-660 nom), also moved p... \n", + "15 Cu 5 um out of focus: -410 nominal\\r\\n \n", + "16 Cu5um back to focus. \n", + "17 Fe500nm Adjust Prof_y to skip the part where Ichiro ha... \n", + "18 10nmPS time to switch to nano particles \n", + "19 10nmPS NaN \n", + "20 10nmPS NaN \n", + "21 10nmPS NaN \n", + "22 10nmPS NaN \n", + "23 10nmPS double check photon energies on Octal \n", + "24 10nmPS first nano particle data \n", + "25 10nmPS checked the target and put it back in. nothing... \n", + "26 10nmPS NaN \n", + "27 10nmPS Move out of focus. Note the Foil is quite bent \n", + "28 10nmPS NaN \n", + "29 10nmPS move Octal close, back to focus \n", + "30 20nmPS changed the comment in the run control to \"see... \n", + "31 20nmPS NaN \n", + "32 copolymer only background with FEL. PMMA in, but no nanoparti... \n", + "33 none background with empty holder. holder motor mov... \n", + "34 10nmcolopymer NaN \n", + "35 copolymer only make intensity dependent histograms \n", + "36 copolymer only NaN \n", + "37 copolymer only NaN \n", + "38 copolymer only NaN \n", + "39 20nm copolymer checking signal. correlations may just be visi... \n", + "40 20nm copolymer defocus, full power \n", + "41 ps only background for ps foil defocus, full beam \n", + "42 fecl3 reference without correlations \n", + "43 fecl3 attn 0.4, focus \n", + "44 fecl3 ni filter foil in front of oktal \n", + "45 ps only retract oktal manually, still filter \n", + "46 ps only removed all attenuation, out of focus \n", + "47 20 nm fe on ps switching to sample for signal \n", + "48 20 nm fe on ps at in, in focus, filter in \n", + "49 20 nm fe on ps att in, in focus, filter out \n", + "\n", + " Post-Run Comment Filter Oktal \\\n", + " Text Material \n", + "1 NaN None \n", + "2 On the dual there are photons with ~160ADU and... None \n", + "3 NaN None \n", + "4 Diffraction visible, see SLACK. Live analysis ... None \n", + "5 foil entirely shot\\r\\n None \n", + "6 NaN None \n", + "7 NaN None \n", + "8 NaN None \n", + "9 NaN None \n", + "10 NaN None \n", + "11 918639,918641,918642,918665 dark after refocusing None \n", + "12 NaN None \n", + "13 NaN None \n", + "14 981704 has fewer shots - was aborte bc of beam... None \n", + "15 NaN None \n", + "16 At the end we were on the plastic tape holding... Nickel \n", + "17 shadows on the bottom of octal. we are probabl... None \n", + "18 super low photon numbers. about 1/4 compared t... None \n", + "19 NaN None \n", + "20 NaN None \n", + "21 NaN None \n", + "22 lots of two photons. Dual sees photons at 7keV... None \n", + "23 Octal sees the photons between 4 and 5keV. Onl... None \n", + "24 NaN None \n", + "25 NaN None \n", + "26 Single photon analysis suggests the sample may... None \n", + "27 NaN None \n", + "28 NaN None \n", + "29 NaN None \n", + "30 probably more than enough signal. changing to ... None \n", + "31 confirmed, that the zink signal comes from the... None \n", + "32 lots of background. Maybe we recorded only bac... None \n", + "33 Plastic scatteres ~6 times as much as the air.... None \n", + "34 Need to know exact target thicknesses! Hardly ... None \n", + "35 NaN None \n", + "36 NaN None \n", + "37 NaN None \n", + "38 NaN None \n", + "39 10 to 20 photons on dual None \n", + "40 a few 100 photons on dual\\r\\nlast couple of sh... None \n", + "41 NaN None \n", + "42 NaN None \n", + "43 NaN None \n", + "44 last couple of shots of run were without the s... Nickel \n", + "45 Octal: Ni peak Nickel \n", + "46 Octal: Ni peak Nickel \n", + "47 Octal: Ni peak Nickel \n", + "48 Octal: Ni peak Nickel \n", + "49 Octal: Fe peak, more 11keV None \n", + "\n", + " Filter Dual Distance_Dual Distance_Oktal focus y p1 p2_stats \\\n", + " Material cm cm um Path Path \n", + "1 None 100.0 43.0 -210.0 NaN NaN \n", + "2 None 100.0 43.0 -210.0 NaN NaN \n", + "3 None 100.0 43.0 -210.0 NaN NaN \n", + "4 None 100.0 43.0 -210.0 NaN NaN \n", + "5 None 100.0 43.0 -210.0 NaN NaN \n", + "6 None 100.0 43.0 -210.0 NaN NaN \n", + "7 None 100.0 43.0 -210.0 NaN NaN \n", + "8 None 100.0 43.0 -210.0 NaN NaN \n", + "9 None 100.0 43.0 -210.0 NaN NaN \n", + "10 None 100.0 43.0 -210.0 NaN NaN \n", + "11 None 100.0 43.0 -160.0 NaN NaN \n", + "12 None 100.0 43.0 -160.0 NaN NaN \n", + "13 None 100.0 43.0 -160.0 NaN NaN \n", + "14 None 100.0 43.0 -160.0 NaN NaN \n", + "15 None 100.0 43.0 -160.0 NaN NaN \n", + "16 Nickel 100.0 43.0 -160.0 NaN NaN \n", + "17 None 100.0 43.0 -160.0 NaN NaN \n", + "18 None 100.0 43.0 -160.0 NaN NaN \n", + "19 None 100.0 43.0 -160.0 NaN NaN \n", + "20 None 100.0 43.0 -160.0 NaN NaN \n", + "21 None 100.0 43.0 -160.0 NaN NaN \n", + "22 None 100.0 43.0 -160.0 NaN NaN \n", + "23 None 100.0 43.0 -160.0 NaN NaN \n", + "24 None 100.0 43.0 -160.0 NaN NaN \n", + "25 None 100.0 43.0 -160.0 NaN NaN \n", + "26 None 100.0 43.0 -160.0 NaN NaN \n", + "27 None 100.0 43.0 -160.0 NaN NaN \n", + "28 None 100.0 43.0 -160.0 NaN NaN \n", + "29 None 100.0 23.5 -160.0 NaN NaN \n", + "30 None 100.0 23.5 -160.0 NaN NaN \n", + "31 None 100.0 23.5 -160.0 NaN NaN \n", + "32 None 100.0 23.5 -160.0 NaN NaN \n", + "33 None 100.0 23.5 -160.0 NaN NaN \n", + "34 None 100.0 23.5 -160.0 NaN NaN \n", + "35 None 100.0 23.5 -160.0 NaN NaN \n", + "36 None 100.0 23.5 -160.0 NaN NaN \n", + "37 None 100.0 23.5 -160.0 NaN NaN \n", + "38 None 100.0 23.5 -160.0 NaN NaN \n", + "39 None 100.0 23.5 -160.0 NaN NaN \n", + "40 None 100.0 23.5 -160.0 NaN NaN \n", + "41 None 100.0 23.5 -160.0 NaN NaN \n", + "42 None 100.0 23.5 -160.0 NaN NaN \n", + "43 None 100.0 23.5 -160.0 NaN NaN \n", + "44 None 100.0 23.5 -160.0 NaN NaN \n", + "45 None 100.0 43.0 -160.0 NaN NaN \n", + "46 None 100.0 43.0 -160.0 NaN NaN \n", + "47 None 100.0 43.0 -160.0 NaN NaN \n", + "48 None 100.0 43.0 -160.0 NaN NaN \n", + "49 None 100.0 43.0 -160.0 NaN NaN \n", + "\n", + " p2_thres1000 p2_thres1500 p2_thres2000 Att Defocus \n", + " Path Path Path mm Silicon um \n", + "1 NaN NaN NaN NaN NaN \n", + "2 NaN NaN NaN NaN NaN \n", + "3 NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN \n", + "5 NaN NaN NaN NaN NaN \n", + "6 NaN NaN NaN NaN NaN \n", + "7 NaN NaN NaN NaN NaN \n", + "8 NaN NaN NaN NaN NaN \n", + "9 NaN NaN NaN NaN NaN \n", + "10 NaN NaN NaN NaN NaN \n", + "11 NaN NaN NaN NaN NaN \n", + "12 NaN NaN NaN NaN NaN \n", + "13 NaN NaN NaN NaN NaN \n", + "14 NaN NaN NaN NaN NaN \n", + "15 NaN NaN NaN NaN NaN \n", + "16 NaN NaN NaN NaN NaN \n", + "17 NaN NaN NaN NaN NaN \n", + "18 NaN NaN NaN NaN NaN \n", + "19 NaN NaN NaN NaN NaN \n", + "20 NaN NaN NaN NaN NaN \n", + "21 NaN NaN NaN NaN NaN \n", + "22 NaN NaN NaN NaN NaN \n", + "23 NaN NaN NaN NaN NaN \n", + "24 NaN NaN NaN NaN NaN \n", + "25 NaN NaN NaN NaN NaN \n", + "26 NaN NaN NaN NaN NaN \n", + "27 NaN NaN NaN NaN NaN \n", + "28 NaN NaN NaN NaN NaN \n", + "29 NaN NaN NaN NaN NaN \n", + "30 NaN NaN NaN NaN NaN \n", + "31 NaN NaN NaN NaN NaN \n", + "32 NaN NaN NaN NaN NaN \n", + "33 NaN NaN NaN NaN NaN \n", + "34 NaN NaN NaN NaN NaN \n", + "35 NaN NaN NaN NaN NaN \n", + "36 NaN NaN NaN NaN NaN \n", + "37 NaN NaN NaN NaN NaN \n", + "38 NaN NaN NaN NaN NaN \n", + "39 NaN NaN NaN NaN NaN \n", + "40 NaN NaN NaN NaN NaN \n", + "41 NaN NaN NaN NaN NaN \n", + "42 NaN NaN NaN NaN NaN \n", + "43 NaN NaN NaN NaN NaN \n", + "44 NaN NaN NaN NaN NaN \n", + "45 NaN NaN NaN NaN NaN \n", + "46 NaN NaN NaN NaN NaN \n", + "47 NaN NaN NaN NaN NaN \n", + "48 NaN NaN NaN NaN NaN \n", + "49 NaN NaN NaN NaN NaN " + ] + }, + "execution_count": 46, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "l[1:50]" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## foils ##" + ] + }, + { + "cell_type": "raw", + "metadata": {}, + "source": [ + "CopperHighNoBeta\n", + "[[3990, 8613, 9704, 11822, 16414, 17449, 18081, 19660, 24251, 25244, 26177, 27507, 32099, 33084, 34043, 34427, 34753, 35508, 39944, 40976, 41731, 43205, 45745, 46845, 49335], [0, 1, 0, 1, 2, 1, 0, 2, 3, 2, 1, 3, 4, 3, 2, 1, 3, 4, 5, 4, 3, 2, 6, 4, 5, 0]]\n", + "IronHighNoBeta\n", + "[[3207, 7175, 8215, 9462, 13303, 14339, 14828, 15730, 19504, 20463, 21328, 21986, 25717, 26702, 27572, 27972, 28335, 29541, 31856, 32839, 34645], [0, 1, 0, 1, 2, 1, 0, 2, 3, 2, 1, 3, 4, 3, 2, 1, 3, 4, 5, 4, 3, 0]]\n", + "IronLowNoBeta\n", + "[[3195, 6989, 11309, 13160, 17758, 19370, 21443, 24325, 26525], [0, 1, 0, 2, 1, 3, 2, 1, 4, 0]]\n", + "CopperHigh\n", + "[[3963, 11824, 19660, 27457, 35196, 43505, 44505, 48325], [0, 1, 2, 3, 4, 5, 0, 6, 0]]\n", + "IronHigh\n", + "[[3166, 9456, 15732, 22044, 28493, 34665], [0, 1, 2, 3, 4, 5, 0]]\n", + "IronLow\n", + "[[3165, 7766, 11233, 14187, 17755, 20560, 24441, 26695], [0, 1, 0, 2, 1, 3, 2, 4, 0]]" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_focus_thres1000_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_focus_thres1500_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_focus_thres1000_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_focus_thres1500_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_focus_thres1500_discSettings_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_focus_thres1500_cont_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu20um_defocus-500_thres1000_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu20um_defocus-500_thres1500_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu20um_defocus-500_thres1000_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu20um_defocus-500_thres1500_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu20um_defocus-500_thres1500_discSettings_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu20um_defocus-500_thres1500_cont_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_defocus-500_thres1000_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_defocus-500_thres1500_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_defocus-500_thres1000_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_defocus-500_thres1500_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_defocus-500_thres1500_discSettings_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Cu5um_defocus-500_thres1500_cont_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_focus_thres1000_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_focus_thres1500_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_focus_thres1000_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_focus_thres1500_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_focus_thres1500_discSettings_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_focus_thres1500_cont_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe10um_focus_thres1000_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe10um_focus_thres1500_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe10um_focus_thres1000_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe10um_focus_thres1500_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe10um_focus_thres1500_discSettings_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe10um_focus_thres1500_cont_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus-200_thres1000_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus-200_thres1500_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus-200_thres1000_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus-200_thres1500_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus-200_thres1500_discSettings_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus-200_thres1500_cont_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus+400_thres1000_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus+400_thres1500_intv_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus+400_thres1000_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus+400_thres1500_disc_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus+400_thres1500_discSettings_dual_p2.h5\n", + "skipping existing /work/gorkhover/foils/p2/final/Fe500nm_defocus+400_thres1500_cont_dual_p2.h5\n" + ] + } + ], + "source": [ + "import glob\n", + "from sacla import *\n", + "outpath='/work/gorkhover/foils/p2/final'\n", + "maskfile='/work/gorkhover/foils/foil_mask_assembledtiles_final.h5'\n", + "\n", + "#!mkdir -p $outpath/cont2\n", + "!mkdir -p $outpath\n", + "\n", + "filenames=glob.glob('/UserData/gorkhover/TAIS2020/foils/p1/final/*.h5')\n", + "cmds=[]\n", + "for filename in filenames:\n", + " name=os.path.splitext(os.path.basename(filename))[0][:-3]\n", + " if '500nm' in name:\n", + " dualsettings='+maxphotons 2 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 2 +scatterphotons 1 +skipphotons 15'\n", + " elif 'nano' in filename:\n", + " dualsettings='+maxphotons 2 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 2 +scatterphotons 1 +skipphotons 15'\n", + " else:\n", + " dualsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 15'\n", + " if 'Fe500' in name:\n", + " photonsettings='[[3165, 7766, 11233, 14187, 17755, 20560, 24441, 26695], [0, 1, 0, 2, 1, 3, 2, 4, 0]]'\n", + " elif 'Fe10um' in name:\n", + " photonsettings='[[3166, 9456, 15732, 22044, 28493, 34665], [0, 1, 2, 3, 4, 5, 0]]'\n", + " elif 'Cu' in name:\n", + " photonsettings='[[3990, 8613, 9704, 11822, 16414, 17449, 18081, 19660, 24251, 25244, 26177, 27507, 32099, 33084, 34043, 34427, 34753, 35508, 39944, 40976, 41731, 43205, 45745, 46845, 49335], [0, 1, 0, 1, 2, 1, 0, 2, 3, 2, 1, 3, 4, 3, 2, 1, 3, 4, 5, 4, 3, 2, 6, 4, 5, 0]]' \n", + " else:\n", + " raise NotImplementedError()\n", + " \n", + " \n", + " \n", + " for thresn,thresp, mode in (\n", + " ('1000',' --deltaehigh 1000 --deltaelow 1000 ', 'intv'),\n", + " ('1500',' --deltaehigh 1500 --deltaelow 1500 ', 'intv'),\n", + " ('1000',' --deltaehigh 1000 --deltaelow 1000 ', 'disc'),\n", + " ('1500',' --deltaehigh 1500 --deltaelow 1500 ', 'disc'),\n", + " ('1500',f'--deltaehigh 1500 --deltaelow 1500 --photonsettings {photonsettings}', 'discSettings'),\n", + " ('1500',' --deltaehigh 1500 --deltaelow 1500', 'cont'),\n", + " ):\n", + " for detname, detstr in (\n", + " ('dual',f'--det dual dual both {dualsettings} --det octal octal stat {octalsettings}'),\n", + " #('octal',f'--det dual stat {dualsettings} --det octal both {octalsettings}')\n", + " ):\n", + " \n", + " outputfile=os.path.join(outpath,'',name+f'_thres{thresn}_{mode}_{detname}_p2.h5')\n", + " if os.path.exists(outputfile):\n", + " print('skipping existing',outputfile)\n", + " continue\n", + " #cmd=f\"python ~/zimmf/phase23.py {filename} {outputfile} --det octal stat --det dual stat --name {name} --nimages 30000 --cont {thresp} --name {name} --maxphotons {maxphotons} --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\"\n", + " cmd=f\"python ~/zimmf/msc/sacla/phase2.py {filename} {outputfile} --name {name} --nimages 30000 --{mode} --nonpixelmeannormalised --singleshotcorr --pearson {thresp} --name {name} --maskfile {maskfile} {detstr} --pulsethres 450\"\n", + "\n", + " cmds.append((f'{name}',cmd))\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Cu5um_defocus-250 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_defocus-250_thres1000_intv_dual_p2.h5 --name Cu5um_defocus-250 --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Cu5um_defocus-250 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47399.fep01\\n')\n", + "Cu5um_defocus-250 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_defocus-250_thres1500_intv_dual_p2.h5 --name Cu5um_defocus-250 --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu5um_defocus-250 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47400.fep01\\n')\n", + "Cu5um_defocus-250 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_defocus-250_thres1000_disc_dual_p2.h5 --name Cu5um_defocus-250 --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Cu5um_defocus-250 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47401.fep01\\n')\n", + "Cu5um_defocus-250 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_defocus-250_thres1500_disc_dual_p2.h5 --name Cu5um_defocus-250 --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu5um_defocus-250 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47402.fep01\\n')\n", + "Cu5um_defocus-250 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_defocus-250_thres1500_discSettings_dual_p2.h5 --name Cu5um_defocus-250 --nimages 30000 --discSettings --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --photonsettings [[3990, 8613, 9704, 11822, 16414, 17449, 18081, 19660, 24251, 25244, 26177, 27507, 32099, 33084, 34043, 34427, 34753, 35508, 39944, 40976, 41731, 43205, 45745, 46845, 49335], [0, 1, 0, 1, 2, 1, 0, 2, 3, 2, 1, 3, 4, 3, 2, 1, 3, 4, 5, 4, 3, 2, 6, 4, 5, 0]] --name Cu5um_defocus-250 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47403.fep01\\n')\n", + "Cu5um_defocus-250 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_defocus-250_thres1500_cont_dual_p2.h5 --name Cu5um_defocus-250 --nimages 30000 --cont --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu5um_defocus-250 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47404.fep01\\n')\n", + "Fe10um_defocus-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe10um_defocus-400_p1.h5 /work/gorkhover/foils/p2/final/Fe10um_defocus-400_thres1000_intv_dual_p2.h5 --name Fe10um_defocus-400 --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Fe10um_defocus-400 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47405.fep01\\n')\n", + "Fe10um_defocus-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe10um_defocus-400_p1.h5 /work/gorkhover/foils/p2/final/Fe10um_defocus-400_thres1500_intv_dual_p2.h5 --name Fe10um_defocus-400 --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe10um_defocus-400 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47406.fep01\\n')\n", + "Fe10um_defocus-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe10um_defocus-400_p1.h5 /work/gorkhover/foils/p2/final/Fe10um_defocus-400_thres1000_disc_dual_p2.h5 --name Fe10um_defocus-400 --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Fe10um_defocus-400 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47407.fep01\\n')\n", + "Fe10um_defocus-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe10um_defocus-400_p1.h5 /work/gorkhover/foils/p2/final/Fe10um_defocus-400_thres1500_disc_dual_p2.h5 --name Fe10um_defocus-400 --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe10um_defocus-400 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47408.fep01\\n')\n", + "Fe10um_defocus-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe10um_defocus-400_p1.h5 /work/gorkhover/foils/p2/final/Fe10um_defocus-400_thres1500_discSettings_dual_p2.h5 --name Fe10um_defocus-400 --nimages 30000 --discSettings --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --photonsettings [[3166, 9456, 15732, 22044, 28493, 34665], [0, 1, 2, 3, 4, 5, 0]] --name Fe10um_defocus-400 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47409.fep01\\n')\n", + "Fe10um_defocus-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe10um_defocus-400_p1.h5 /work/gorkhover/foils/p2/final/Fe10um_defocus-400_thres1500_cont_dual_p2.h5 --name Fe10um_defocus-400 --nimages 30000 --cont --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe10um_defocus-400 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47410.fep01\\n')\n", + "Fe500nm_focus_2 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_2_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_2_thres1000_intv_dual_p2.h5 --name Fe500nm_focus_2 --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Fe500nm_focus_2 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47411.fep01\\n')\n", + "Fe500nm_focus_2 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_2_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_2_thres1500_intv_dual_p2.h5 --name Fe500nm_focus_2 --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe500nm_focus_2 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47412.fep01\\n')\n", + "Fe500nm_focus_2 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_2_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_2_thres1000_disc_dual_p2.h5 --name Fe500nm_focus_2 --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Fe500nm_focus_2 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47413.fep01\\n')\n", + "Fe500nm_focus_2 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_2_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_2_thres1500_disc_dual_p2.h5 --name Fe500nm_focus_2 --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe500nm_focus_2 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47414.fep01\\n')\n", + "Fe500nm_focus_2 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_2_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_2_thres1500_discSettings_dual_p2.h5 --name Fe500nm_focus_2 --nimages 30000 --discSettings --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --photonsettings [[3165, 7766, 11233, 14187, 17755, 20560, 24441, 26695], [0, 1, 0, 2, 1, 3, 2, 4, 0]] --name Fe500nm_focus_2 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47415.fep01\\n')\n", + "Fe500nm_focus_2 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_2_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_2_thres1500_cont_dual_p2.h5 --name Fe500nm_focus_2 --nimages 30000 --cont --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe500nm_focus_2 --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47416.fep01\\n')\n", + "Cu5um_focus_filter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_focus_filter_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_focus_filter_thres1000_intv_dual_p2.h5 --name Cu5um_focus_filter --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Cu5um_focus_filter --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47417.fep01\\n')\n", + "Cu5um_focus_filter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_focus_filter_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_focus_filter_thres1500_intv_dual_p2.h5 --name Cu5um_focus_filter --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu5um_focus_filter --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47418.fep01\\n')\n", + "Cu5um_focus_filter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_focus_filter_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_focus_filter_thres1000_disc_dual_p2.h5 --name Cu5um_focus_filter --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Cu5um_focus_filter --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47419.fep01\\n')\n", + "Cu5um_focus_filter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_focus_filter_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_focus_filter_thres1500_disc_dual_p2.h5 --name Cu5um_focus_filter --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu5um_focus_filter --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47420.fep01\\n')\n", + "Cu5um_focus_filter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_focus_filter_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_focus_filter_thres1500_discSettings_dual_p2.h5 --name Cu5um_focus_filter --nimages 30000 --discSettings --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --photonsettings [[3990, 8613, 9704, 11822, 16414, 17449, 18081, 19660, 24251, 25244, 26177, 27507, 32099, 33084, 34043, 34427, 34753, 35508, 39944, 40976, 41731, 43205, 45745, 46845, 49335], [0, 1, 0, 1, 2, 1, 0, 2, 3, 2, 1, 3, 4, 3, 2, 1, 3, 4, 5, 4, 3, 2, 6, 4, 5, 0]] --name Cu5um_focus_filter --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47421.fep01\\n')\n", + "Cu5um_focus_filter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_focus_filter_p1.h5 /work/gorkhover/foils/p2/final/Cu5um_focus_filter_thres1500_cont_dual_p2.h5 --name Cu5um_focus_filter --nimages 30000 --cont --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu5um_focus_filter --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47422.fep01\\n')\n", + "Cu20um_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu20um_focus_p1.h5 /work/gorkhover/foils/p2/final/Cu20um_focus_thres1000_intv_dual_p2.h5 --name Cu20um_focus --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Cu20um_focus --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47423.fep01\\n')\n", + "Cu20um_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu20um_focus_p1.h5 /work/gorkhover/foils/p2/final/Cu20um_focus_thres1500_intv_dual_p2.h5 --name Cu20um_focus --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu20um_focus --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47424.fep01\\n')\n", + "Cu20um_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu20um_focus_p1.h5 /work/gorkhover/foils/p2/final/Cu20um_focus_thres1000_disc_dual_p2.h5 --name Cu20um_focus --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Cu20um_focus --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47425.fep01\\n')\n", + "Cu20um_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu20um_focus_p1.h5 /work/gorkhover/foils/p2/final/Cu20um_focus_thres1500_disc_dual_p2.h5 --name Cu20um_focus --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu20um_focus --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47426.fep01\\n')\n", + "Cu20um_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu20um_focus_p1.h5 /work/gorkhover/foils/p2/final/Cu20um_focus_thres1500_discSettings_dual_p2.h5 --name Cu20um_focus --nimages 30000 --discSettings --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --photonsettings [[3990, 8613, 9704, 11822, 16414, 17449, 18081, 19660, 24251, 25244, 26177, 27507, 32099, 33084, 34043, 34427, 34753, 35508, 39944, 40976, 41731, 43205, 45745, 46845, 49335], [0, 1, 0, 1, 2, 1, 0, 2, 3, 2, 1, 3, 4, 3, 2, 1, 3, 4, 5, 4, 3, 2, 6, 4, 5, 0]] --name Cu20um_focus --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47427.fep01\\n')\n", + "Cu20um_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu20um_focus_p1.h5 /work/gorkhover/foils/p2/final/Cu20um_focus_thres1500_cont_dual_p2.h5 --name Cu20um_focus --nimages 30000 --cont --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Cu20um_focus --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450\n", + "(0, '47428.fep01\\n')\n", + "Fe500nm_focus_high python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_high_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_high_thres1000_intv_dual_p2.h5 --name Fe500nm_focus_high --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Fe500nm_focus_high --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47429.fep01\\n')\n", + "Fe500nm_focus_high python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_high_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_high_thres1500_intv_dual_p2.h5 --name Fe500nm_focus_high --nimages 30000 --intv --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe500nm_focus_high --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47430.fep01\\n')\n", + "Fe500nm_focus_high python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_high_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_high_thres1000_disc_dual_p2.h5 --name Fe500nm_focus_high --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1000 --deltaelow 1000 --name Fe500nm_focus_high --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47431.fep01\\n')\n", + "Fe500nm_focus_high python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_high_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_high_thres1500_disc_dual_p2.h5 --name Fe500nm_focus_high --nimages 30000 --disc --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe500nm_focus_high --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47432.fep01\\n')\n", + "Fe500nm_focus_high python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_high_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_high_thres1500_discSettings_dual_p2.h5 --name Fe500nm_focus_high --nimages 30000 --discSettings --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --photonsettings [[3165, 7766, 11233, 14187, 17755, 20560, 24441, 26695], [0, 1, 0, 2, 1, 3, 2, 4, 0]] --name Fe500nm_focus_high --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47433.fep01\\n')\n", + "Fe500nm_focus_high python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/foils/p1/final/Fe500nm_focus_high_p1.h5 /work/gorkhover/foils/p2/final/Fe500nm_focus_high_thres1500_cont_dual_p2.h5 --name Fe500nm_focus_high --nimages 30000 --cont --nonpixelmeannormalised --singleshotcorr --pearson --deltaehigh 1500 --deltaelow 1500 --name Fe500nm_focus_high --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det dual dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '47434.fep01\\n')\n" + ] + } + ], + "source": [ + "for name,cmd in cmds:\n", + " print(name,cmd)\n", + " print(qsub(['eval \"$(conda shell.bash hook)\"','conda activate ~/anaconda3/envs/zimmf4',cmd],jobname=f\"p2f3_{name}\"))" + ] + }, + { + "cell_type": "code", + "execution_count": 117, + "metadata": {}, + "outputs": [], + "source": [ + "import glob\n", + "from sacla import *\n", + "outpath='/work/gorkhover/foils/p2/final-more'\n", + "maskfile='/work/gorkhover/foils/foil_mask_assembledtiles_final.h5'\n", + "\n", + "#!mkdir -p $outpath/cont2\n", + "!mkdir -p $outpath\n", + "\n", + "filenames=glob.glob('/UserData/gorkhover/TAIS2020/foils/p1/final/*.h5')\n", + "cmds=[]\n", + "for filename in filenames:\n", + " name=os.path.splitext(os.path.basename(filename))[0][:-3]\n", + " if '500nm' in name:\n", + " dualsettings='+maxphotons 2 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 2 +scatterphotons 1 +skipphotons 15'\n", + " elif 'nano' in filename:\n", + " dualsettings='+maxphotons 2 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 2 +scatterphotons 1 +skipphotons 15'\n", + " else:\n", + " dualsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 15'\n", + " if 'Fe500' in name:\n", + " photonsettings='[[3165, 7766, 11233, 14187, 17755, 20560, 24441, 26695], [0, 1, 0, 2, 1, 3, 2, 4, 0]]'\n", + " elif 'Fe10um' in name:\n", + " photonsettings='[[3166, 9456, 15732, 22044, 28493, 34665], [0, 1, 2, 3, 4, 5, 0]]'\n", + " elif 'Cu' in name:\n", + " photonsettings='[[3990, 8613, 9704, 11822, 16414, 17449, 18081, 19660, 24251, 25244, 26177, 27507, 32099, 33084, 34043, 34427, 34753, 35508, 39944, 40976, 41731, 43205, 45745, 46845, 49335], [0, 1, 0, 1, 2, 1, 0, 2, 3, 2, 1, 3, 4, 3, 2, 1, 3, 4, 5, 4, 3, 2, 6, 4, 5, 0]]' \n", + " else:\n", + " raise NotImplementedError()\n", + " \n", + " \n", + " \n", + " for thresn,thresp, mode in (\n", + " ('1500',' --deltaehigh 1500 --deltaelow 1500 ', 'disc'),\n", + " ):\n", + " for detname, detstr in (\n", + " ('dual',f'--det octal octal stat {octalsettings} --det dual dual both {dualsettings}'),\n", + " #('octal',f'--det dual stat {dualsettings} --det octal both {octalsettings}')\n", + " ):\n", + " if not 'Cu5um_focus' in name or 'filter' in name: continue\n", + " outputfile=os.path.join(outpath,'',name+f'_thres{thresn}_{mode}_{detname}_p2.h5')\n", + " if os.path.exists(outputfile):\n", + " print('skipping existing',outputfile)\n", + " continue\n", + " #cmd=f\"python ~/zimmf/phase23.py {filename} {outputfile} --det octal stat --det dual stat --name {name} --nimages 30000 --cont {thresp} --name {name} --maxphotons {maxphotons} --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\"\n", + " cmd=f\"MKL_THREADING_LAYER=GNU python ~/zimmf/msc/sacla/phase2-morethreads.py {filename} {outputfile} --name {name} --nimages 40000 --{mode} --singleshotcorr {thresp} --name {name} --maskfile {maskfile} {detstr} --pulsethres 350\"\n", + "\n", + " cmds.append((f'{name}',cmd))\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 119, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Cu5um_focus MKL_THREADING_LAYER=GNU python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_focus_p1.h5 /work/gorkhover/foils/p2/final-more/Cu5um_focus_thres1500_disc_dual_p2.h5 --name Cu5um_focus --nimages 40000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name Cu5um_focus --maskfile /work/gorkhover/foils/foil_mask_assembledtiles_final.h5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --pulsethres 350\n", + "(0, '64114.fep01\\n')\n" + ] + } + ], + "source": [ + "for name,cmd in cmds:\n", + " print(name,cmd)\n", + " print(qsub(['eval \"$(conda shell.bash hook)\"','conda activate ~/anaconda3/envs/zimmf4',cmd],jobname=f\"p2f4_{name}\",threads=24))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## nano ##" + ] + }, + { + "cell_type": "code", + "execution_count": 38, + "metadata": {}, + "outputs": [], + "source": [ + "import glob\n", + "from sacla import *\n", + "outpath='/work/gorkhover/nano/p2/final/'\n", + "maskfile='/work/gorkhover/nano/nano_mask_assembledtiles_final.h5'\n", + "\n", + "#!mkdir -p $outpath/cont2\n", + "!mkdir -p $outpath\n", + "\n", + "filenames=glob.glob('/UserData/gorkhover/TAIS2020/nano/p1/final/*.h5')\n", + "cmds=[]\n", + " \n", + "for thresn,thresp in [\n", + " ('1000',' --deltaehigh 1000 --deltaelow 1000 '),\n", + " ('1500',' --deltaehigh 1500 --deltaelow 1500 '),\n", + "]: \n", + " for filename in filenames:\n", + " name=os.path.splitext(os.path.basename(filename))[0][:-3]\n", + " \n", + "\n", + " \n", + " if '500nm' in name:\n", + " dualsettings='+maxphotons 2 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct'\n", + " elif 'nano' in filename:\n", + " dualsettings='+maxphotons 2 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct'\n", + " elif 'focus_nofilter' in filename:\n", + " dualsettings='+maxphotons 2 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 2 +scatterphotons 1 +skipphotons 30 +correct' \n", + " else:\n", + " dualsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 15 +correct'\n", + "\n", + "\n", + "\n", + " for detn,detstr in [\n", + " ('octal',f'--det octal octal both {octalsettings}'),\n", + "# ('dual',f'--det octal octal stat {octalsettings} --det dual dual both {dualsettings}')\n", + " ]:\n", + "\n", + " mode='--disc'\n", + " outputfile=os.path.join(outpath,'',name+f'_thres{thresn}_disc_{detn}_p2n.h5')\n", + "\n", + " #cmd=f\"python ~/zimmf/phase23.py {filename} {outputfile} --det octal stat --det dual stat --name {name} --nimages 30000 --cont {thresp} --name {name} --maxphotons {maxphotons} --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\"\n", + " #cmd=f\"python ~/zimmf/phase26.py {filename} {outputfile} --name {name} --nimages 30000 --{mode} --singleshotcorr {thresp} --name {name} --maskfile {maskfile} {detstr} --pulsethres 450\"\n", + " cmd=f\"python ~/zimmf/msc/sacla/phase2-morethreads.py {filename} {outputfile} --name {name} --nimages 30000 {mode} {thresp} --name {name} {detstr} --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile {maskfile} --roi 100\"\n", + "\n", + " cmds.append((f'{name}',cmd))\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 24, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "1" + ] + }, + "execution_count": 24, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "1" + ] + }, + { + "cell_type": "code", + "execution_count": 37, + "metadata": {}, + "outputs": [], + "source": [ + "for name,cmd in cmds:\n", + " if 'det dual dual both' in cmd:\n", + " #print(name,cmd)\n", + " #print(qsub(['eval \"$(conda shell.bash hook)\"','conda activate ~/anaconda3/envs/zimmf4',cmd],jobname=f\"p2n_{name}\"))\n", + " pass" + ] + }, + { + "cell_type": "code", + "execution_count": 40, + "metadata": {}, + "outputs": [], + "source": [ + "didnotwork=[]" + ] + }, + { + "cell_type": "code", + "execution_count": 41, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "copolymeronly python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /work/gorkhover/nano/p2/final/copolymeronly_thres1000_disc_octal_p2n.h5 --name copolymeronly --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name copolymeronly --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49226.fep01\\n')\n", + "benNi40nm python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi40nm_p1.h5 /work/gorkhover/nano/p2/final/benNi40nm_thres1000_disc_octal_p2n.h5 --name benNi40nm --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name benNi40nm --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49227.fep01\\n')\n", + "20nmPS_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final/20nmPS_+400_thres1000_disc_octal_p2n.h5 --name 20nmPS_+400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49228.fep01\\n')\n", + "20nmPS_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final/20nmPS_-400_thres1000_disc_octal_p2n.h5 --name 20nmPS_-400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49229.fep01\\n')\n", + "10nmCo_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final/10nmCo_+400_thres1000_disc_octal_p2n.h5 --name 10nmCo_+400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49230.fep01\\n')\n", + "benNi20nm python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi20nm_p1.h5 /work/gorkhover/nano/p2/final/benNi20nm_thres1000_disc_octal_p2n.h5 --name benNi20nm --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name benNi20nm --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49231.fep01\\n')\n", + "FeCl3PS_focus python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_focus_thres1000_disc_octal_p2n.h5 --name FeCl3PS_focus --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49232.fep01\\n')\n", + "20nmSpin python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmSpin_p1.h5 /work/gorkhover/nano/p2/final/20nmSpin_thres1000_disc_octal_p2n.h5 --name 20nmSpin --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmSpin --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49233.fep01\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_focus_nofilter_thres1000_disc_octal_p2n.h5 --name 10nmPS_focus_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49234.fep01\\n')\n", + "10nmCo_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final/10nmCo_-400_thres1000_disc_octal_p2n.h5 --name 10nmCo_-400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49235.fep01\\n')\n", + "10nmPS_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_-400_thres1000_disc_octal_p2n.h5 --name 10nmPS_-400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49236.fep01\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /work/gorkhover/nano/p2/final/20nmCo_-400_nofilter_thres1000_disc_octal_p2n.h5 --name 20nmCo_-400_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49237.fep01\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_-400_att_nofilter_thres1000_disc_octal_p2n.h5 --name 10nmPS_-400_att_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_att_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49238.fep01\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_-400_full_nofilter_thres1000_disc_octal_p2n.h5 --name 10nmPS_-400_full_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_full_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49239.fep01\\n')\n", + "10nmPS_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_+400_thres1000_disc_octal_p2n.h5 --name 10nmPS_+400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49240.fep01\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/copolymeronly_focus_nofilter_thres1000_disc_octal_p2n.h5 --name copolymeronly_focus_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name copolymeronly_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49241.fep01\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmCo_focus_nofilter_thres1000_disc_octal_p2n.h5 --name 10nmCo_focus_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49242.fep01\\n')\n", + "FeCl3PS_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_-400_thres1000_disc_octal_p2n.h5 --name FeCl3PS_-400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '49243.fep01\\n')\n", + "Fe10um_NPref python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /work/gorkhover/nano/p2/final/Fe10um_NPref_thres1000_disc_octal_p2n.h5 --name Fe10um_NPref --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name Fe10um_NPref --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_focus_far_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_focus_far_nofilter_thres1000_disc_octal_p2n.h5 --name 10nmPS_focus_far_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_far_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmcopolymer_unknown python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /work/gorkhover/nano/p2/final/20nmcopolymer_unknown_thres1000_disc_octal_p2n.h5 --name 20nmcopolymer_unknown --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmcopolymer_unknown --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/20nmPS_focus_nofilter_thres1000_disc_octal_p2n.h5 --name 20nmPS_focus_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "FeCl3PS_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_focus_nofilter_thres1000_disc_octal_p2n.h5 --name FeCl3PS_focus_nofilter --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPMMAold python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /work/gorkhover/nano/p2/final/10nmPMMAold_thres1000_disc_octal_p2n.h5 --name 10nmPMMAold --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPMMAold --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_short python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_short_thres1000_disc_octal_p2n.h5 --name 10nmPS_short --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_short --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmCo_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final/20nmCo_+400_thres1000_disc_octal_p2n.h5 --name 20nmCo_+400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "FeCl3PS_+1000 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_+1000_thres1000_disc_octal_p2n.h5 --name FeCl3PS_+1000 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_+1000 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmCo_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final/20nmCo_-400_thres1000_disc_octal_p2n.h5 --name 20nmCo_-400 --nimages 30000 --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "copolymeronly python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /work/gorkhover/nano/p2/final/copolymeronly_thres1500_disc_octal_p2n.h5 --name copolymeronly --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name copolymeronly --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "benNi40nm python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi40nm_p1.h5 /work/gorkhover/nano/p2/final/benNi40nm_thres1500_disc_octal_p2n.h5 --name benNi40nm --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name benNi40nm --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmPS_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final/20nmPS_+400_thres1500_disc_octal_p2n.h5 --name 20nmPS_+400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmPS_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final/20nmPS_-400_thres1500_disc_octal_p2n.h5 --name 20nmPS_-400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmCo_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final/10nmCo_+400_thres1500_disc_octal_p2n.h5 --name 10nmCo_+400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "benNi20nm python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi20nm_p1.h5 /work/gorkhover/nano/p2/final/benNi20nm_thres1500_disc_octal_p2n.h5 --name benNi20nm --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name benNi20nm --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "FeCl3PS_focus python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_focus_thres1500_disc_octal_p2n.h5 --name FeCl3PS_focus --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmSpin python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmSpin_p1.h5 /work/gorkhover/nano/p2/final/20nmSpin_thres1500_disc_octal_p2n.h5 --name 20nmSpin --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmSpin --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_focus_nofilter_thres1500_disc_octal_p2n.h5 --name 10nmPS_focus_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmCo_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final/10nmCo_-400_thres1500_disc_octal_p2n.h5 --name 10nmCo_-400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_-400_thres1500_disc_octal_p2n.h5 --name 10nmPS_-400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmCo_-400_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /work/gorkhover/nano/p2/final/20nmCo_-400_nofilter_thres1500_disc_octal_p2n.h5 --name 20nmCo_-400_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_-400_att_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_-400_att_nofilter_thres1500_disc_octal_p2n.h5 --name 10nmPS_-400_att_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_att_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_-400_full_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_-400_full_nofilter_thres1500_disc_octal_p2n.h5 --name 10nmPS_-400_full_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_full_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_+400_thres1500_disc_octal_p2n.h5 --name 10nmPS_+400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "copolymeronly_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/copolymeronly_focus_nofilter_thres1500_disc_octal_p2n.h5 --name copolymeronly_focus_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name copolymeronly_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmCo_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmCo_focus_nofilter_thres1500_disc_octal_p2n.h5 --name 10nmCo_focus_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "FeCl3PS_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_-400_thres1500_disc_octal_p2n.h5 --name FeCl3PS_-400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "Fe10um_NPref python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /work/gorkhover/nano/p2/final/Fe10um_NPref_thres1500_disc_octal_p2n.h5 --name Fe10um_NPref --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name Fe10um_NPref --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_focus_far_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_focus_far_nofilter_thres1500_disc_octal_p2n.h5 --name 10nmPS_focus_far_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_far_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmcopolymer_unknown python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /work/gorkhover/nano/p2/final/20nmcopolymer_unknown_thres1500_disc_octal_p2n.h5 --name 20nmcopolymer_unknown --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmcopolymer_unknown --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/20nmPS_focus_nofilter_thres1500_disc_octal_p2n.h5 --name 20nmPS_focus_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "FeCl3PS_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_focus_nofilter_thres1500_disc_octal_p2n.h5 --name FeCl3PS_focus_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPMMAold python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /work/gorkhover/nano/p2/final/10nmPMMAold_thres1500_disc_octal_p2n.h5 --name 10nmPMMAold --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPMMAold --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "10nmPS_short python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_short_thres1500_disc_octal_p2n.h5 --name 10nmPS_short --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_short --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmCo_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final/20nmCo_+400_thres1500_disc_octal_p2n.h5 --name 20nmCo_+400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "FeCl3PS_+1000 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_+1000_thres1500_disc_octal_p2n.h5 --name FeCl3PS_+1000 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_+1000 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "20nmCo_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final/20nmCo_-400_thres1500_disc_octal_p2n.h5 --name 20nmCo_-400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n" + ] + } + ], + "source": [ + "for name,cmd in cmds:\n", + " if 'det octal octal both' in cmd:\n", + " print(name,cmd)\n", + " ret=qsub(['eval \"$(conda shell.bash hook)\"','conda activate ~/anaconda3/envs/zimmf4',cmd],jobname=f\"p2no2_{name}\",mem=64,threads=24)\n", + " if ret[0]!=0:\n", + " didnotwork.append((name,cmd))\n", + " else:\n", + " print(ret)" + ] + }, + { + "cell_type": "code", + "execution_count": 88, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + " tile0(512, 1024) bool\n", + " tile1(512, 1024) bool\n", + " tile2(512, 1024) bool\n", + " tile3(512, 1024) bool\n", + " tile4(512, 1024) bool\n", + " tile5(512, 1024) bool\n", + " tile6(512, 1024) bool\n", + " tile7(512, 1024) bool\n" + ] + } + ], + "source": [ + "browse(h5py.File('/work/gorkhover/nano/nano_mask_octaltiles.h5'))" + ] + }, + { + "cell_type": "code", + "execution_count": 54, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "20nmcopolymer_unknown python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /work/gorkhover/nano/p2/final/20nmcopolymer_unknown_thres1500_disc_octal_p2n.h5 --name 20nmcopolymer_unknown --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmcopolymer_unknown --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '53878.fep01\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/20nmPS_focus_nofilter_thres1500_disc_octal_p2n.h5 --name 20nmPS_focus_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '53879.fep01\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_focus_nofilter_thres1500_disc_octal_p2n.h5 --name FeCl3PS_focus_nofilter --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus_nofilter --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '53880.fep01\\n')\n", + "10nmPMMAold python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /work/gorkhover/nano/p2/final/10nmPMMAold_thres1500_disc_octal_p2n.h5 --name 10nmPMMAold --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPMMAold --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '53881.fep01\\n')\n", + "10nmPS_short python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /work/gorkhover/nano/p2/final/10nmPS_short_thres1500_disc_octal_p2n.h5 --name 10nmPS_short --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_short --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '53882.fep01\\n')\n", + "20nmCo_+400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final/20nmCo_+400_thres1500_disc_octal_p2n.h5 --name 20nmCo_+400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_+400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '53883.fep01\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /work/gorkhover/nano/p2/final/FeCl3PS_+1000_thres1500_disc_octal_p2n.h5 --name FeCl3PS_+1000 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_+1000 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '53884.fep01\\n')\n", + "20nmCo_-400 python ~/zimmf/msc/sacla/phase2-morethreads.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final/20nmCo_-400_thres1500_disc_octal_p2n.h5 --name 20nmCo_-400 --nimages 30000 --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400 --det octal octal both +maxphotons 2 +scatterphotons 1 +skipphotons 15 +correct --nonpixelmeannormalised --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_assembledtiles_final.h5 --roi 100\n", + "(0, '53885.fep01\\n')\n" + ] + } + ], + "source": [ + "didnotwork4=[]\n", + "for name,cmd in didnotwork3:\n", + " if 'det octal octal both' in cmd:\n", + " print(name,cmd)\n", + " ret=qsub(['eval \"$(conda shell.bash hook)\"','conda activate ~/anaconda3/envs/zimmf4',cmd],jobname=f\"p2no2_{name}\",mem=64,threads=24)\n", + " if ret[0]!=0:\n", + " didnotwork4.append((name,cmd))\n", + " else:\n", + " print(ret)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 55, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "[]" + ] + }, + "execution_count": 55, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "didnotwork4" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 72, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "nano_mask_assembledtiles_final.h5 nano_mask_octaltiles.h5 res202109\n", + "nano_mask_assembledtiles.h5\t p2\n" + ] + } + ], + "source": [ + "!ls /work/gorkhover/nano/" + ] + }, + { + "cell_type": "code", + "execution_count": 97, + "metadata": {}, + "outputs": [], + "source": [ + "import glob\n", + "from sacla import *\n", + "outpath='/work/gorkhover/nano/p2/final_tilewise2/'\n", + "maskfile='/work/gorkhover/nano/nano_mask_octaltiles2.h5'\n", + "\n", + "#!mkdir -p $outpath/cont2\n", + "!mkdir -p $outpath\n", + "\n", + "filenames=glob.glob('/UserData/gorkhover/TAIS2020/nano/p1/final/*.h5')\n", + "cmds=[]\n", + " \n", + "for thresn,thresp in [\n", + "# ('1000',' --deltaehigh 1000 --deltaelow 1000 '),\n", + " ('0812',' --deltaehigh 800 --deltaelow 1200'),\n", + "]: \n", + " for filename in filter(lambda x: not any([s in x for s in ['ben','Spin']]),filenames):\n", + " name=os.path.splitext(os.path.basename(filename))[0][:-3]\n", + " \n", + " octalsettings='+maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct'\n", + "\n", + " for detn,detstr in [\n", + " (f'octal-tilesA',' '.join([f'--det tile{t} octal both +tile {t} {octalsettings}' for t in [0,1]])),\n", + " (f'octal-tilesB',' '.join([f'--det tile{t} octal both +tile {t} {octalsettings}' for t in [2,3]])),\n", + " (f'octal-tilesC',' '.join([f'--det tile{t} octal both +tile {t} {octalsettings}' for t in [4,5]])),\n", + " (f'octal-tilesD',' '.join([f'--det tile{t} octal both +tile {t} {octalsettings}' for t in [6,7]])),\n", + "\n", + "\n", + " ]:\n", + " mode='--disc'\n", + " outputfile=os.path.join(outpath,'',name+f'_thres{thresn}_disc_{detn}_p2t.h5')\n", + "\n", + " #cmd=f\"python ~/zimmf/phase23.py {filename} {outputfile} --det octal stat --det dual stat --name {name} --nimages 30000 --cont {thresp} --name {name} --maxphotons {maxphotons} --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\"\n", + " #cmd=f\"python ~/zimmf/phase26.py {filename} {outputfile} --name {name} --nimages 30000 --{mode} --singleshotcorr {thresp} --name {name} --maskfile {maskfile} {detstr} --pulsethres 450\"\n", + " cmd=f\"python ~/zimmf/msc/sacla/phase2.py {filename} {outputfile} --name {name} --nimages 20000 {mode} {thresp} --name {name} {detstr} --singleshotcorr --pulsethres 450 --maskfile {maskfile} --roi 20\"\n", + "\n", + " cmds.append((f'{name}',cmd))\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 98, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "copolymeronly python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/copolymeronly_thres0812_disc_octal-tilesA_p2t.h5 --name copolymeronly --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name copolymeronly --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61464.fep01\\n')\n", + "copolymeronly python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/copolymeronly_thres0812_disc_octal-tilesB_p2t.h5 --name copolymeronly --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name copolymeronly --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61465.fep01\\n')\n", + "copolymeronly python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/copolymeronly_thres0812_disc_octal-tilesC_p2t.h5 --name copolymeronly --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name copolymeronly --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61466.fep01\\n')\n", + "copolymeronly python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/copolymeronly_thres0812_disc_octal-tilesD_p2t.h5 --name copolymeronly --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name copolymeronly --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61467.fep01\\n')\n", + "20nmPS_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_+400_thres0812_disc_octal-tilesA_p2t.h5 --name 20nmPS_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_+400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61468.fep01\\n')\n", + "20nmPS_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_+400_thres0812_disc_octal-tilesB_p2t.h5 --name 20nmPS_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_+400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61469.fep01\\n')\n", + "20nmPS_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_+400_thres0812_disc_octal-tilesC_p2t.h5 --name 20nmPS_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_+400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61470.fep01\\n')\n", + "20nmPS_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_+400_thres0812_disc_octal-tilesD_p2t.h5 --name 20nmPS_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_+400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61471.fep01\\n')\n", + "20nmPS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_-400_thres0812_disc_octal-tilesA_p2t.h5 --name 20nmPS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_-400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61472.fep01\\n')\n", + "20nmPS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_-400_thres0812_disc_octal-tilesB_p2t.h5 --name 20nmPS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_-400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61473.fep01\\n')\n", + "20nmPS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_-400_thres0812_disc_octal-tilesC_p2t.h5 --name 20nmPS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_-400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61474.fep01\\n')\n", + "20nmPS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_-400_thres0812_disc_octal-tilesD_p2t.h5 --name 20nmPS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_-400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61475.fep01\\n')\n", + "10nmCo_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_+400_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmCo_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_+400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61476.fep01\\n')\n", + "10nmCo_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_+400_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmCo_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_+400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61477.fep01\\n')\n", + "10nmCo_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_+400_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmCo_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_+400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61478.fep01\\n')\n", + "10nmCo_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_+400_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmCo_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_+400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61479.fep01\\n')\n", + "FeCl3PS_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_focus_thres0812_disc_octal-tilesA_p2t.h5 --name FeCl3PS_focus --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_focus --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61480.fep01\\n')\n", + "FeCl3PS_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_focus_thres0812_disc_octal-tilesB_p2t.h5 --name FeCl3PS_focus --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_focus --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61481.fep01\\n')\n", + "FeCl3PS_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_focus_thres0812_disc_octal-tilesC_p2t.h5 --name FeCl3PS_focus --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_focus --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61482.fep01\\n')\n", + "FeCl3PS_focus python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_focus_thres0812_disc_octal-tilesD_p2t.h5 --name FeCl3PS_focus --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_focus --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61483.fep01\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_focus_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmPS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_focus_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61484.fep01\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_focus_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmPS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_focus_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61485.fep01\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_focus_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmPS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_focus_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61486.fep01\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_focus_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmPS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_focus_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61487.fep01\\n')\n", + "10nmCo_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_-400_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmCo_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_-400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61488.fep01\\n')\n", + "10nmCo_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_-400_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmCo_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_-400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61489.fep01\\n')\n", + "10nmCo_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_-400_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmCo_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_-400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61490.fep01\\n')\n", + "10nmCo_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_-400_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmCo_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_-400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61491.fep01\\n')\n", + "10nmPS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmPS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61492.fep01\\n')\n", + "10nmPS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmPS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61493.fep01\\n')\n", + "10nmPS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmPS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61494.fep01\\n')\n", + "10nmPS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmPS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61495.fep01\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_-400_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name 20nmCo_-400_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_-400_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61496.fep01\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_-400_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name 20nmCo_-400_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_-400_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61497.fep01\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_-400_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name 20nmCo_-400_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_-400_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61498.fep01\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_-400_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name 20nmCo_-400_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_-400_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61499.fep01\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_att_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmPS_-400_att_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400_att_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61500.fep01\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_att_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmPS_-400_att_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400_att_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61501.fep01\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_att_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmPS_-400_att_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400_att_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61502.fep01\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_att_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmPS_-400_att_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400_att_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61503.fep01\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_full_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmPS_-400_full_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400_full_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61504.fep01\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_full_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmPS_-400_full_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400_full_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61505.fep01\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_full_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmPS_-400_full_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400_full_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61506.fep01\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_-400_full_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmPS_-400_full_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_-400_full_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61507.fep01\\n')\n", + "10nmPS_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_+400_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmPS_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_+400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61508.fep01\\n')\n", + "10nmPS_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_+400_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmPS_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_+400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61509.fep01\\n')\n", + "10nmPS_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_+400_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmPS_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_+400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61510.fep01\\n')\n", + "10nmPS_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_+400_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmPS_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_+400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61511.fep01\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/copolymeronly_focus_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name copolymeronly_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name copolymeronly_focus_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61512.fep01\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/copolymeronly_focus_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name copolymeronly_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name copolymeronly_focus_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61513.fep01\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/copolymeronly_focus_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name copolymeronly_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name copolymeronly_focus_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61514.fep01\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/copolymeronly_focus_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name copolymeronly_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name copolymeronly_focus_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61515.fep01\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_focus_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmCo_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_focus_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61516.fep01\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_focus_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmCo_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_focus_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61517.fep01\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_focus_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmCo_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_focus_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61518.fep01\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmCo_focus_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmCo_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmCo_focus_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61519.fep01\\n')\n", + "FeCl3PS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_-400_thres0812_disc_octal-tilesA_p2t.h5 --name FeCl3PS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_-400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61520.fep01\\n')\n", + "FeCl3PS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_-400_thres0812_disc_octal-tilesB_p2t.h5 --name FeCl3PS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_-400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61521.fep01\\n')\n", + "FeCl3PS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_-400_thres0812_disc_octal-tilesC_p2t.h5 --name FeCl3PS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_-400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61522.fep01\\n')\n", + "FeCl3PS_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_-400_thres0812_disc_octal-tilesD_p2t.h5 --name FeCl3PS_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_-400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61523.fep01\\n')\n", + "Fe10um_NPref python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/Fe10um_NPref_thres0812_disc_octal-tilesA_p2t.h5 --name Fe10um_NPref --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name Fe10um_NPref --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61524.fep01\\n')\n", + "Fe10um_NPref python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/Fe10um_NPref_thres0812_disc_octal-tilesB_p2t.h5 --name Fe10um_NPref --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name Fe10um_NPref --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61525.fep01\\n')\n", + "Fe10um_NPref python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/Fe10um_NPref_thres0812_disc_octal-tilesC_p2t.h5 --name Fe10um_NPref --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name Fe10um_NPref --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61526.fep01\\n')\n", + "Fe10um_NPref python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/Fe10um_NPref_thres0812_disc_octal-tilesD_p2t.h5 --name Fe10um_NPref --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name Fe10um_NPref --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61527.fep01\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_focus_far_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmPS_focus_far_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_focus_far_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61528.fep01\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_focus_far_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmPS_focus_far_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_focus_far_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61529.fep01\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_focus_far_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmPS_focus_far_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_focus_far_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61530.fep01\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_focus_far_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmPS_focus_far_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_focus_far_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61531.fep01\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmcopolymer_unknown_thres0812_disc_octal-tilesA_p2t.h5 --name 20nmcopolymer_unknown --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmcopolymer_unknown --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61532.fep01\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmcopolymer_unknown_thres0812_disc_octal-tilesB_p2t.h5 --name 20nmcopolymer_unknown --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmcopolymer_unknown --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61533.fep01\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmcopolymer_unknown_thres0812_disc_octal-tilesC_p2t.h5 --name 20nmcopolymer_unknown --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmcopolymer_unknown --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61534.fep01\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmcopolymer_unknown_thres0812_disc_octal-tilesD_p2t.h5 --name 20nmcopolymer_unknown --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmcopolymer_unknown --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61535.fep01\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_focus_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name 20nmPS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_focus_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61536.fep01\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_focus_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name 20nmPS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_focus_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61537.fep01\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_focus_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name 20nmPS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_focus_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61538.fep01\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmPS_focus_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name 20nmPS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmPS_focus_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61539.fep01\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_focus_nofilter_thres0812_disc_octal-tilesA_p2t.h5 --name FeCl3PS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_focus_nofilter --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61540.fep01\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_focus_nofilter_thres0812_disc_octal-tilesB_p2t.h5 --name FeCl3PS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_focus_nofilter --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61541.fep01\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_focus_nofilter_thres0812_disc_octal-tilesC_p2t.h5 --name FeCl3PS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_focus_nofilter --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61542.fep01\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_focus_nofilter_thres0812_disc_octal-tilesD_p2t.h5 --name FeCl3PS_focus_nofilter --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_focus_nofilter --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61543.fep01\\n')\n", + "10nmPMMAold python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPMMAold_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmPMMAold --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPMMAold --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61544.fep01\\n')\n", + "10nmPMMAold python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPMMAold_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmPMMAold --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPMMAold --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61545.fep01\\n')\n", + "10nmPMMAold python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPMMAold_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmPMMAold --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPMMAold --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61546.fep01\\n')\n", + "10nmPMMAold python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPMMAold_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmPMMAold --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPMMAold --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61547.fep01\\n')\n", + "10nmPS_short python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_short_thres0812_disc_octal-tilesA_p2t.h5 --name 10nmPS_short --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_short --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "(0, '61548.fep01\\n')\n", + "10nmPS_short python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_short_thres0812_disc_octal-tilesB_p2t.h5 --name 10nmPS_short --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_short --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "10nmPS_short python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_short_thres0812_disc_octal-tilesC_p2t.h5 --name 10nmPS_short --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_short --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "10nmPS_short python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/10nmPS_short_thres0812_disc_octal-tilesD_p2t.h5 --name 10nmPS_short --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 10nmPS_short --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "20nmCo_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_+400_thres0812_disc_octal-tilesA_p2t.h5 --name 20nmCo_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_+400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "20nmCo_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_+400_thres0812_disc_octal-tilesB_p2t.h5 --name 20nmCo_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_+400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "20nmCo_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_+400_thres0812_disc_octal-tilesC_p2t.h5 --name 20nmCo_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_+400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "20nmCo_+400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_+400_thres0812_disc_octal-tilesD_p2t.h5 --name 20nmCo_+400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_+400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "FeCl3PS_+1000 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_+1000_thres0812_disc_octal-tilesA_p2t.h5 --name FeCl3PS_+1000 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_+1000 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "FeCl3PS_+1000 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_+1000_thres0812_disc_octal-tilesB_p2t.h5 --name FeCl3PS_+1000 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_+1000 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "FeCl3PS_+1000 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_+1000_thres0812_disc_octal-tilesC_p2t.h5 --name FeCl3PS_+1000 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_+1000 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "FeCl3PS_+1000 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/FeCl3PS_+1000_thres0812_disc_octal-tilesD_p2t.h5 --name FeCl3PS_+1000 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name FeCl3PS_+1000 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "20nmCo_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_-400_thres0812_disc_octal-tilesA_p2t.h5 --name 20nmCo_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_-400 --det tile0 octal both +tile 0 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile1 octal both +tile 1 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "20nmCo_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_-400_thres0812_disc_octal-tilesB_p2t.h5 --name 20nmCo_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_-400 --det tile2 octal both +tile 2 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile3 octal both +tile 3 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "20nmCo_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_-400_thres0812_disc_octal-tilesC_p2t.h5 --name 20nmCo_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_-400 --det tile4 octal both +tile 4 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile5 octal both +tile 5 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n", + "20nmCo_-400 python ~/zimmf/msc/sacla/phase2.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /work/gorkhover/nano/p2/final_tilewise2/20nmCo_-400_thres0812_disc_octal-tilesD_p2t.h5 --name 20nmCo_-400 --nimages 20000 --disc --deltaehigh 800 --deltaelow 1200 --name 20nmCo_-400 --det tile6 octal both +tile 6 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --det tile7 octal both +tile 7 +maxphotons 2 +scatterphotons 1 +skipphotons 20 +correct --singleshotcorr --pulsethres 450 --maskfile /work/gorkhover/nano/nano_mask_octaltiles2.h5 --roi 20\n" + ] + } + ], + "source": [ + "didnotwork4=[]\n", + "for name,cmd in cmds:\n", + " print(name,cmd)\n", + " ret=qsub(['eval \"$(conda shell.bash hook)\"','conda activate ~/anaconda3/envs/zimmf4',cmd],jobname=f\"p2not9_{name}\",mem=32,threads=12)\n", + " if ret[0]!=0:\n", + " didnotwork4.append((name,cmd))\n", + " else:\n", + " print(ret)" + ] + }, + { + "cell_type": "code", + "execution_count": 96, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "[]" + ] + }, + "execution_count": 96, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 77, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/home/gorkhover/zimmf/msc/sacla/phase2-12threads.py\n" + ] + } + ], + "source": [ + "!ls ~/zimmf/msc/sacla/phase2-12threads.py" + ] + }, + { + "cell_type": "code", + "execution_count": 76, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "[]" + ] + }, + "execution_count": 76, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "didnotwork4" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "copolymeronly python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/copolymeronly_thres1000_stat_p2.h5 --name copolymeronly --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name copolymeronly --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376251.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/benNi40nm_thres1000_stat_p2.h5 --name benNi40nm --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name benNi40nm --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376252.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmPS_+400_thres1000_stat_p2.h5 --name 20nmPS_+400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_+400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376253.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmPS_-400_thres1000_stat_p2.h5 --name 20nmPS_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376254.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmCo_+400_thres1000_stat_p2.h5 --name 10nmCo_+400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_+400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376255.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/benNi20nm_thres1000_stat_p2.h5 --name benNi20nm --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name benNi20nm --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376256.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/FeCl3PS_focus_thres1000_stat_p2.h5 --name FeCl3PS_focus --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376257.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmSpin_thres1000_stat_p2.h5 --name 20nmSpin --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmSpin --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376258.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_focus_nofilter_thres1000_stat_p2.h5 --name 10nmPS_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376259.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmCo_-400_thres1000_stat_p2.h5 --name 10nmCo_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376260.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_-400_thres1000_stat_p2.h5 --name 10nmPS_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376261.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmCo_-400_nofilter_thres1000_stat_p2.h5 --name 20nmCo_-400_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376262.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_-400_att_nofilter_thres1000_stat_p2.h5 --name 10nmPS_-400_att_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_att_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376263.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_-400_full_nofilter_thres1000_stat_p2.h5 --name 10nmPS_-400_full_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_full_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376264.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_+400_thres1000_stat_p2.h5 --name 10nmPS_+400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_+400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376265.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/copolymeronly_focus_nofilter_thres1000_stat_p2.h5 --name copolymeronly_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name copolymeronly_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376266.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmCo_focus_nofilter_thres1000_stat_p2.h5 --name 10nmCo_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376267.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/FeCl3PS_-400_thres1000_stat_p2.h5 --name FeCl3PS_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376268.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/Fe10um_NPref_thres1000_stat_p2.h5 --name Fe10um_NPref --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name Fe10um_NPref --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376269.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_focus_far_nofilter_thres1000_stat_p2.h5 --name 10nmPS_focus_far_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_far_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376270.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmcopolymer_unknown_thres1000_stat_p2.h5 --name 20nmcopolymer_unknown --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmcopolymer_unknown --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376271.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmPS_focus_nofilter_thres1000_stat_p2.h5 --name 20nmPS_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376272.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/FeCl3PS_focus_nofilter_thres1000_stat_p2.h5 --name FeCl3PS_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376273.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPMMAold_thres1000_stat_p2.h5 --name 10nmPMMAold --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPMMAold --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376274.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_short_thres1000_stat_p2.h5 --name 10nmPS_short --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_short --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376275.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmCo_+400_thres1000_stat_p2.h5 --name 20nmCo_+400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_+400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376276.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/FeCl3PS_+1000_thres1000_stat_p2.h5 --name FeCl3PS_+1000 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_+1000 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376277.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmCo_-400_thres1000_stat_p2.h5 --name 20nmCo_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376278.fep02-ib\\n')\n", + "copolymeronly python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/copolymeronly_thres1500_stat_p2.h5 --name copolymeronly --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name copolymeronly --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376279.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/benNi40nm_thres1500_stat_p2.h5 --name benNi40nm --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name benNi40nm --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376280.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmPS_+400_thres1500_stat_p2.h5 --name 20nmPS_+400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_+400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376281.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmPS_-400_thres1500_stat_p2.h5 --name 20nmPS_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376282.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmCo_+400_thres1500_stat_p2.h5 --name 10nmCo_+400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_+400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376283.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/benNi20nm_thres1500_stat_p2.h5 --name benNi20nm --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name benNi20nm --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376284.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/FeCl3PS_focus_thres1500_stat_p2.h5 --name FeCl3PS_focus --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376285.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmSpin_thres1500_stat_p2.h5 --name 20nmSpin --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmSpin --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376286.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_focus_nofilter_thres1500_stat_p2.h5 --name 10nmPS_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376287.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmCo_-400_thres1500_stat_p2.h5 --name 10nmCo_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376288.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_-400_thres1500_stat_p2.h5 --name 10nmPS_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376289.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmCo_-400_nofilter_thres1500_stat_p2.h5 --name 20nmCo_-400_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376290.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_-400_att_nofilter_thres1500_stat_p2.h5 --name 10nmPS_-400_att_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_att_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376291.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_-400_full_nofilter_thres1500_stat_p2.h5 --name 10nmPS_-400_full_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_full_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376292.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_+400_thres1500_stat_p2.h5 --name 10nmPS_+400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_+400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376293.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/copolymeronly_focus_nofilter_thres1500_stat_p2.h5 --name copolymeronly_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name copolymeronly_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376294.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmCo_focus_nofilter_thres1500_stat_p2.h5 --name 10nmCo_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376295.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/FeCl3PS_-400_thres1500_stat_p2.h5 --name FeCl3PS_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376296.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/Fe10um_NPref_thres1500_stat_p2.h5 --name Fe10um_NPref --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name Fe10um_NPref --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376297.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_focus_far_nofilter_thres1500_stat_p2.h5 --name 10nmPS_focus_far_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_far_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376298.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmcopolymer_unknown_thres1500_stat_p2.h5 --name 20nmcopolymer_unknown --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmcopolymer_unknown --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376299.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmPS_focus_nofilter_thres1500_stat_p2.h5 --name 20nmPS_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376300.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/FeCl3PS_focus_nofilter_thres1500_stat_p2.h5 --name FeCl3PS_focus_nofilter --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus_nofilter --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376301.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPMMAold_thres1500_stat_p2.h5 --name 10nmPMMAold --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPMMAold --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376302.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/10nmPS_short_thres1500_stat_p2.h5 --name 10nmPS_short --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_short --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376303.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmCo_+400_thres1500_stat_p2.h5 --name 20nmCo_+400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_+400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376304.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/FeCl3PS_+1000_thres1500_stat_p2.h5 --name FeCl3PS_+1000 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_+1000 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376305.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase27.py /UserData/gorkhover/TAIS2020/nano/p1/parts/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/20nmCo_-400_thres1500_stat_p2.h5 --name 20nmCo_-400 --nimages 40000 --cont --intv --disc --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400 --det dual dual stat +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct --pulsethres 450\n", + "(0, '2376306.fep02-ib\\n')\n" + ] + } + ], + "source": [ + "for name,cmd in cmds:\n", + " print(name,cmd)\n", + " print(qsub(['eval \"$(conda shell.bash hook)\"','conda activate zimmf3',cmd],jobname=f\"p2st_{name}\"))" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 34, + "metadata": {}, + "outputs": [], + "source": [ + "import glob\n", + "from sacla import *\n", + "outpath='/UserData/gorkhover/TAIS2020/nano/p2/stat_tiles/'\n", + "#maskfile='/UserData/gorkhover/TAIS2020/nano/nano_mask1.h5'\n", + "\n", + "#!mkdir -p $outpath/cont2\n", + "!mkdir -p $outpath\n", + "\n", + "filenames=glob.glob('/UserData/gorkhover/TAIS2020/nano/p1/final/*.h5')\n", + "cmds=[]\n", + "for filename in filenames:\n", + " name=os.path.splitext(os.path.basename(filename))[0][:-3]\n", + " if '500nm' in name:\n", + " dualsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct'\n", + " elif 'nano' in filename:\n", + " dualsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 3 +scatterphotons 1 +skipphotons 15 +correct'\n", + " else:\n", + " dualsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 5'\n", + " octalsettings='+maxphotons 3 +scatterphotons 0 +skipphotons 15 +correct'\n", + " \n", + " for thresn,thresp in [\n", + " #('1000',' --deltaehigh 1000 --deltaelow 1000 '),\n", + " ('1500',' --deltaehigh 1500 --deltaelow 1500 '),\n", + " # ('2000',' --deltaehigh 2000 --deltaelow 2000 '),\n", + " ]:\n", + " for detname, detstr in [\n", + " #('dual',f'--det dual stat {dualsettings} --det octal both {octalsettings}'),\n", + " ('octal',f'--det dual dual stat {dualsettings} --det octal octal stat {octalsettings}')\n", + " ]:\n", + " for mode in ('cont','disc'):\n", + " outputfile=os.path.join(outpath,'',name+f'_thres{thresn}_{mode}_{detname}_p2.h5')\n", + "\n", + " #cmd=f\"python ~/zimmf/phase23.py {filename} {outputfile} --det octal stat --det dual stat --name {name} --nimages 30000 --cont {thresp} --name {name} --maxphotons {maxphotons} --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\"\n", + " #cmd=f\"python ~/zimmf/phase26.py {filename} {outputfile} --name {name} --nimages 30000 --{mode} --singleshotcorr {thresp} --name {name} --maskfile {maskfile} {detstr} --pulsethres 450\"\n", + " cmd=f\"python ~/zimmf/phase27.py {filename} {outputfile} --name {name} --nimages 30000 --{mode} {thresp} --name {name} --maskfile {maskfile} {detstr} --pulsethres 450\"\n", + "\n", + " cmds.append((f'{name}',cmd))\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 36, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "copolymeronly python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/copolymeronly_thres1000_cont_octal_p2.h5 --name copolymeronly --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name copolymeronly --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333161.fep02-ib\\n')\n", + "copolymeronly python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/copolymeronly_thres1000_disc_octal_p2.h5 --name copolymeronly --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name copolymeronly --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333162.fep02-ib\\n')\n", + "copolymeronly python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/copolymeronly_thres1500_cont_octal_p2.h5 --name copolymeronly --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name copolymeronly --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333163.fep02-ib\\n')\n", + "copolymeronly python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/copolymeronly_thres1500_disc_octal_p2.h5 --name copolymeronly --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name copolymeronly --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333164.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/benNi40nm_thres1000_cont_octal_p2.h5 --name benNi40nm --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name benNi40nm --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333165.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/benNi40nm_thres1000_disc_octal_p2.h5 --name benNi40nm --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name benNi40nm --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333166.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/benNi40nm_thres1500_cont_octal_p2.h5 --name benNi40nm --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name benNi40nm --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333167.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/benNi40nm_thres1500_disc_octal_p2.h5 --name benNi40nm --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name benNi40nm --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333168.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_+400_thres1000_cont_octal_p2.h5 --name 20nmPS_+400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333169.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_+400_thres1000_disc_octal_p2.h5 --name 20nmPS_+400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333170.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_+400_thres1500_cont_octal_p2.h5 --name 20nmPS_+400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333171.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_+400_thres1500_disc_octal_p2.h5 --name 20nmPS_+400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333172.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_-400_thres1000_cont_octal_p2.h5 --name 20nmPS_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333173.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_-400_thres1000_disc_octal_p2.h5 --name 20nmPS_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333174.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_-400_thres1500_cont_octal_p2.h5 --name 20nmPS_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333175.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_-400_thres1500_disc_octal_p2.h5 --name 20nmPS_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333176.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_+400_thres1000_cont_octal_p2.h5 --name 10nmCo_+400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333177.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_+400_thres1000_disc_octal_p2.h5 --name 10nmCo_+400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333178.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_+400_thres1500_cont_octal_p2.h5 --name 10nmCo_+400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333179.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_+400_thres1500_disc_octal_p2.h5 --name 10nmCo_+400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333180.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/benNi20nm_thres1000_cont_octal_p2.h5 --name benNi20nm --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name benNi20nm --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333181.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/benNi20nm_thres1000_disc_octal_p2.h5 --name benNi20nm --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name benNi20nm --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333182.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/benNi20nm_thres1500_cont_octal_p2.h5 --name benNi20nm --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name benNi20nm --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333183.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/benNi20nm_thres1500_disc_octal_p2.h5 --name benNi20nm --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name benNi20nm --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333184.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_focus_thres1000_cont_octal_p2.h5 --name FeCl3PS_focus --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333185.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_focus_thres1000_disc_octal_p2.h5 --name FeCl3PS_focus --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333186.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_focus_thres1500_cont_octal_p2.h5 --name FeCl3PS_focus --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333187.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_focus_thres1500_disc_octal_p2.h5 --name FeCl3PS_focus --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333188.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmSpin_thres1000_cont_octal_p2.h5 --name 20nmSpin --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmSpin --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333189.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmSpin_thres1000_disc_octal_p2.h5 --name 20nmSpin --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmSpin --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333190.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmSpin_thres1500_cont_octal_p2.h5 --name 20nmSpin --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmSpin --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333191.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmSpin_thres1500_disc_octal_p2.h5 --name 20nmSpin --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmSpin --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333192.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_focus_nofilter_thres1000_cont_octal_p2.h5 --name 10nmPS_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333193.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_focus_nofilter_thres1000_disc_octal_p2.h5 --name 10nmPS_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333194.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_focus_nofilter_thres1500_cont_octal_p2.h5 --name 10nmPS_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333195.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_focus_nofilter_thres1500_disc_octal_p2.h5 --name 10nmPS_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333196.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_-400_thres1000_cont_octal_p2.h5 --name 10nmCo_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333197.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_-400_thres1000_disc_octal_p2.h5 --name 10nmCo_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333198.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_-400_thres1500_cont_octal_p2.h5 --name 10nmCo_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333199.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_-400_thres1500_disc_octal_p2.h5 --name 10nmCo_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333200.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_thres1000_cont_octal_p2.h5 --name 10nmPS_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333201.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_thres1000_disc_octal_p2.h5 --name 10nmPS_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333202.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_thres1500_cont_octal_p2.h5 --name 10nmPS_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333203.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_thres1500_disc_octal_p2.h5 --name 10nmPS_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333204.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_-400_nofilter_thres1000_cont_octal_p2.h5 --name 20nmCo_-400_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333205.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_-400_nofilter_thres1000_disc_octal_p2.h5 --name 20nmCo_-400_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333206.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_-400_nofilter_thres1500_cont_octal_p2.h5 --name 20nmCo_-400_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333207.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_-400_nofilter_thres1500_disc_octal_p2.h5 --name 20nmCo_-400_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333208.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_att_nofilter_thres1000_cont_octal_p2.h5 --name 10nmPS_-400_att_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_att_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333209.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_att_nofilter_thres1000_disc_octal_p2.h5 --name 10nmPS_-400_att_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_att_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333210.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_att_nofilter_thres1500_cont_octal_p2.h5 --name 10nmPS_-400_att_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_att_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333211.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_att_nofilter_thres1500_disc_octal_p2.h5 --name 10nmPS_-400_att_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_att_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333212.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_full_nofilter_thres1000_cont_octal_p2.h5 --name 10nmPS_-400_full_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_full_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333213.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_full_nofilter_thres1000_disc_octal_p2.h5 --name 10nmPS_-400_full_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_full_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333214.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_full_nofilter_thres1500_cont_octal_p2.h5 --name 10nmPS_-400_full_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_full_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333215.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_-400_full_nofilter_thres1500_disc_octal_p2.h5 --name 10nmPS_-400_full_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_full_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333216.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_+400_thres1000_cont_octal_p2.h5 --name 10nmPS_+400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333217.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_+400_thres1000_disc_octal_p2.h5 --name 10nmPS_+400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333218.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_+400_thres1500_cont_octal_p2.h5 --name 10nmPS_+400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333219.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_+400_thres1500_disc_octal_p2.h5 --name 10nmPS_+400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333220.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/copolymeronly_focus_nofilter_thres1000_cont_octal_p2.h5 --name copolymeronly_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name copolymeronly_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333221.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/copolymeronly_focus_nofilter_thres1000_disc_octal_p2.h5 --name copolymeronly_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name copolymeronly_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333222.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/copolymeronly_focus_nofilter_thres1500_cont_octal_p2.h5 --name copolymeronly_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name copolymeronly_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333223.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/copolymeronly_focus_nofilter_thres1500_disc_octal_p2.h5 --name copolymeronly_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name copolymeronly_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333224.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_focus_nofilter_thres1000_cont_octal_p2.h5 --name 10nmCo_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333225.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_focus_nofilter_thres1000_disc_octal_p2.h5 --name 10nmCo_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333226.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_focus_nofilter_thres1500_cont_octal_p2.h5 --name 10nmCo_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333227.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmCo_focus_nofilter_thres1500_disc_octal_p2.h5 --name 10nmCo_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333228.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_-400_thres1000_cont_octal_p2.h5 --name FeCl3PS_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333229.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_-400_thres1000_disc_octal_p2.h5 --name FeCl3PS_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333230.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_-400_thres1500_cont_octal_p2.h5 --name FeCl3PS_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333231.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_-400_thres1500_disc_octal_p2.h5 --name FeCl3PS_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333232.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/Fe10um_NPref_thres1000_cont_octal_p2.h5 --name Fe10um_NPref --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name Fe10um_NPref --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333233.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/Fe10um_NPref_thres1000_disc_octal_p2.h5 --name Fe10um_NPref --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name Fe10um_NPref --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333234.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/Fe10um_NPref_thres1500_cont_octal_p2.h5 --name Fe10um_NPref --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name Fe10um_NPref --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333235.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/Fe10um_NPref_thres1500_disc_octal_p2.h5 --name Fe10um_NPref --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name Fe10um_NPref --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333236.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_focus_far_nofilter_thres1000_cont_octal_p2.h5 --name 10nmPS_focus_far_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_far_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333237.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_focus_far_nofilter_thres1000_disc_octal_p2.h5 --name 10nmPS_focus_far_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_far_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333238.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_focus_far_nofilter_thres1500_cont_octal_p2.h5 --name 10nmPS_focus_far_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_far_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333239.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_focus_far_nofilter_thres1500_disc_octal_p2.h5 --name 10nmPS_focus_far_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_far_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333240.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmcopolymer_unknown_thres1000_cont_octal_p2.h5 --name 20nmcopolymer_unknown --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmcopolymer_unknown --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333241.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmcopolymer_unknown_thres1000_disc_octal_p2.h5 --name 20nmcopolymer_unknown --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmcopolymer_unknown --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333242.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmcopolymer_unknown_thres1500_cont_octal_p2.h5 --name 20nmcopolymer_unknown --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmcopolymer_unknown --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333243.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmcopolymer_unknown_thres1500_disc_octal_p2.h5 --name 20nmcopolymer_unknown --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmcopolymer_unknown --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333244.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_focus_nofilter_thres1000_cont_octal_p2.h5 --name 20nmPS_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333245.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_focus_nofilter_thres1000_disc_octal_p2.h5 --name 20nmPS_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333246.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_focus_nofilter_thres1500_cont_octal_p2.h5 --name 20nmPS_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333247.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmPS_focus_nofilter_thres1500_disc_octal_p2.h5 --name 20nmPS_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333248.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_focus_nofilter_thres1000_cont_octal_p2.h5 --name FeCl3PS_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333249.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_focus_nofilter_thres1000_disc_octal_p2.h5 --name FeCl3PS_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333250.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_focus_nofilter_thres1500_cont_octal_p2.h5 --name FeCl3PS_focus_nofilter --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333251.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_focus_nofilter_thres1500_disc_octal_p2.h5 --name FeCl3PS_focus_nofilter --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus_nofilter --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333252.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPMMAold_thres1000_cont_octal_p2.h5 --name 10nmPMMAold --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPMMAold --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333253.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPMMAold_thres1000_disc_octal_p2.h5 --name 10nmPMMAold --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPMMAold --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333254.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPMMAold_thres1500_cont_octal_p2.h5 --name 10nmPMMAold --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPMMAold --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333255.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPMMAold_thres1500_disc_octal_p2.h5 --name 10nmPMMAold --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPMMAold --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333256.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_short_thres1000_cont_octal_p2.h5 --name 10nmPS_short --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_short --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333257.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_short_thres1000_disc_octal_p2.h5 --name 10nmPS_short --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_short --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333258.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_short_thres1500_cont_octal_p2.h5 --name 10nmPS_short --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_short --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333259.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/10nmPS_short_thres1500_disc_octal_p2.h5 --name 10nmPS_short --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_short --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333260.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_+400_thres1000_cont_octal_p2.h5 --name 20nmCo_+400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333261.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_+400_thres1000_disc_octal_p2.h5 --name 20nmCo_+400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333262.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_+400_thres1500_cont_octal_p2.h5 --name 20nmCo_+400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333263.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_+400_thres1500_disc_octal_p2.h5 --name 20nmCo_+400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_+400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333264.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_+1000_thres1000_cont_octal_p2.h5 --name FeCl3PS_+1000 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_+1000 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333265.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_+1000_thres1000_disc_octal_p2.h5 --name FeCl3PS_+1000 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_+1000 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333266.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_+1000_thres1500_cont_octal_p2.h5 --name FeCl3PS_+1000 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_+1000 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333267.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/FeCl3PS_+1000_thres1500_disc_octal_p2.h5 --name FeCl3PS_+1000 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_+1000 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333268.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_-400_thres1000_cont_octal_p2.h5 --name 20nmCo_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333269.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_-400_thres1000_disc_octal_p2.h5 --name 20nmCo_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333270.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_-400_thres1500_cont_octal_p2.h5 --name 20nmCo_-400 --nimages 30000 --cont --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333271.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase26.py /UserData/gorkhover/TAIS2020/nano/p1/final/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/final1/20nmCo_-400_thres1500_disc_octal_p2.h5 --name 20nmCo_-400 --nimages 30000 --disc --singleshotcorr --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5 --det dual both +maxphotons 2 +scatterphotons 0 +skipphotons 5 --det octal stat +maxphotons 2 +scatterphotons 1 +skipphotons 15 --pulsethres 450\n", + "(0, '2333272.fep02-ib\\n')\n" + ] + } + ], + "source": [ + "for name,cmd in cmds:\n", + " print(name,cmd)\n", + " print(qsub(['eval \"$(conda shell.bash hook)\"','conda activate zimmf3',cmd],jobname=f\"p2s_{name}\"))" + ] + }, + { + "cell_type": "code", + "execution_count": 59, + "metadata": {}, + "outputs": [], + "source": [ + "import glob\n", + "from sacla import *\n", + "outpath='/UserData/gorkhover/TAIS2020/nano/p2/new3/'\n", + "\n", + "#!mkdir -p $outpath/cont2\n", + "!mkdir -p $outpath\n", + "\n", + "filenames=glob.glob('/UserData/gorkhover/TAIS2020/nano/p1/new3/*.h5')\n", + "cmds=[]\n", + "for filename in filenames:\n", + " name=os.path.splitext(os.path.basename(filename))[0][:-3]\n", + " maxphotons=30 if 'nofilter' in name else 10\n", + " #maxphotons=5\n", + " for thresn,thresp in (\n", + " ('1000',' --deltaehigh 1000 --deltaelow 1000 '),\n", + " ('1500',' --deltaehigh 1500 --deltaelow 1500 '),\n", + " ('2000',' --deltaehigh 2000 --deltaelow 2000 '),\n", + " ):\n", + " outputfile=os.path.join(outpath,'',name+f'_thres{thresn}_p2.h5')\n", + "\n", + " cmd=f\"python ~/zimmf/phase23.py {filename} {outputfile} --det octal stat --det dual both --name {name} --nimages 30000 --cont {thresp} --name {name} --maxphotons {maxphotons} --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\"\n", + " #cmd=f\"python ~/zimmf/phase23.py {filename} {outputfile} --det dual both --name {name} --nimages 30000 --cont {thresp} --name {name} --maxphotons {maxphotons} --maskfile /home/gorkhover/work/TAIS2020/foil_mask.h5\"\n", + "\n", + " cmds.append((f'{name}',cmd))\n", + " \n", + " #outputfile=os.path.join(outpath,\"disc\",name+'_p2.h5') \n", + " #cmd=f\"python ~/zimmf/phase2.py {filename} {outputfile} --maskfile /home/gorkhover/work/TAIS2020/foil_mask.h5\"\n", + " #cmds.append((f'{name}_disc',cmd))" + ] + }, + { + "cell_type": "code", + "execution_count": 60, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "copolymeronly python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/copolymeronly_thres1000_p2.h5 --det octal stat --det dual both --name copolymeronly --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name copolymeronly --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331548.fep02-ib\\n')\n", + "copolymeronly python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/copolymeronly_thres1500_p2.h5 --det octal stat --det dual both --name copolymeronly --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name copolymeronly --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331549.fep02-ib\\n')\n", + "copolymeronly python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/copolymeronly_thres2000_p2.h5 --det octal stat --det dual both --name copolymeronly --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name copolymeronly --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331550.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/benNi40nm_thres1000_p2.h5 --det octal stat --det dual both --name benNi40nm --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name benNi40nm --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331551.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/benNi40nm_thres1500_p2.h5 --det octal stat --det dual both --name benNi40nm --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name benNi40nm --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331552.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/benNi40nm_thres2000_p2.h5 --det octal stat --det dual both --name benNi40nm --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name benNi40nm --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331553.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_+400_thres1000_p2.h5 --det octal stat --det dual both --name 20nmPS_+400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331554.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_+400_thres1500_p2.h5 --det octal stat --det dual both --name 20nmPS_+400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331555.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_+400_thres2000_p2.h5 --det octal stat --det dual both --name 20nmPS_+400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 20nmPS_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331556.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_-400_thres1000_p2.h5 --det octal stat --det dual both --name 20nmPS_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331557.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_-400_thres1500_p2.h5 --det octal stat --det dual both --name 20nmPS_-400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331558.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_-400_thres2000_p2.h5 --det octal stat --det dual both --name 20nmPS_-400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 20nmPS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331559.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_+400_thres1000_p2.h5 --det octal stat --det dual both --name 10nmCo_+400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331560.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_+400_thres1500_p2.h5 --det octal stat --det dual both --name 10nmCo_+400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331561.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_+400_thres2000_p2.h5 --det octal stat --det dual both --name 10nmCo_+400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmCo_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331562.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/benNi20nm_thres1000_p2.h5 --det octal stat --det dual both --name benNi20nm --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name benNi20nm --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331563.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/benNi20nm_thres1500_p2.h5 --det octal stat --det dual both --name benNi20nm --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name benNi20nm --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331564.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/benNi20nm_thres2000_p2.h5 --det octal stat --det dual both --name benNi20nm --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name benNi20nm --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331565.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_focus_thres1000_p2.h5 --det octal stat --det dual both --name FeCl3PS_focus --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331566.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_focus_thres1500_p2.h5 --det octal stat --det dual both --name FeCl3PS_focus --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331567.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_focus_thres2000_p2.h5 --det octal stat --det dual both --name FeCl3PS_focus --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name FeCl3PS_focus --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331568.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmSpin_thres1000_p2.h5 --det octal stat --det dual both --name 20nmSpin --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmSpin --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331569.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmSpin_thres1500_p2.h5 --det octal stat --det dual both --name 20nmSpin --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 20nmSpin --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331570.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmSpin_thres2000_p2.h5 --det octal stat --det dual both --name 20nmSpin --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 20nmSpin --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331571.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_focus_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name 10nmPS_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331572.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_focus_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name 10nmPS_focus_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331573.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_focus_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name 10nmPS_focus_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmPS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331574.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_-400_thres1000_p2.h5 --det octal stat --det dual both --name 10nmCo_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331575.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_-400_thres1500_p2.h5 --det octal stat --det dual both --name 10nmCo_-400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331576.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_-400_thres2000_p2.h5 --det octal stat --det dual both --name 10nmCo_-400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmCo_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331577.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_thres1000_p2.h5 --det octal stat --det dual both --name 10nmPS_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331578.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_thres1500_p2.h5 --det octal stat --det dual both --name 10nmPS_-400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331579.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_thres2000_p2.h5 --det octal stat --det dual both --name 10nmPS_-400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmPS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331580.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_-400_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name 20nmCo_-400_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331581.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_-400_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name 20nmCo_-400_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331582.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_-400_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name 20nmCo_-400_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 20nmCo_-400_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331583.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_att_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name 10nmPS_-400_att_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_att_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331584.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_att_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name 10nmPS_-400_att_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_att_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331585.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_att_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name 10nmPS_-400_att_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmPS_-400_att_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331586.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_full_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name 10nmPS_-400_full_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_full_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331587.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_full_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name 10nmPS_-400_full_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_-400_full_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331588.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_-400_full_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name 10nmPS_-400_full_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmPS_-400_full_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331589.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_+400_thres1000_p2.h5 --det octal stat --det dual both --name 10nmPS_+400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331590.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_+400_thres1500_p2.h5 --det octal stat --det dual both --name 10nmPS_+400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331591.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_+400_thres2000_p2.h5 --det octal stat --det dual both --name 10nmPS_+400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmPS_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331592.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/copolymeronly_focus_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name copolymeronly_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name copolymeronly_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331593.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/copolymeronly_focus_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name copolymeronly_focus_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name copolymeronly_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331594.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/copolymeronly_focus_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name copolymeronly_focus_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name copolymeronly_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331595.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_focus_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name 10nmCo_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331596.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_focus_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name 10nmCo_focus_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmCo_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331597.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmCo_focus_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name 10nmCo_focus_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmCo_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331598.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_-400_thres1000_p2.h5 --det octal stat --det dual both --name FeCl3PS_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331599.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_-400_thres1500_p2.h5 --det octal stat --det dual both --name FeCl3PS_-400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331600.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_-400_thres2000_p2.h5 --det octal stat --det dual both --name FeCl3PS_-400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name FeCl3PS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331601.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/Fe10um_NPref_thres1000_p2.h5 --det octal stat --det dual both --name Fe10um_NPref --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name Fe10um_NPref --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331602.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/Fe10um_NPref_thres1500_p2.h5 --det octal stat --det dual both --name Fe10um_NPref --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name Fe10um_NPref --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331603.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/Fe10um_NPref_thres2000_p2.h5 --det octal stat --det dual both --name Fe10um_NPref --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name Fe10um_NPref --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331604.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_focus_far_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name 10nmPS_focus_far_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_far_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331605.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_focus_far_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name 10nmPS_focus_far_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_focus_far_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331606.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_focus_far_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name 10nmPS_focus_far_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmPS_focus_far_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331607.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmcopolymer_unknown_thres1000_p2.h5 --det octal stat --det dual both --name 20nmcopolymer_unknown --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmcopolymer_unknown --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331608.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmcopolymer_unknown_thres1500_p2.h5 --det octal stat --det dual both --name 20nmcopolymer_unknown --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 20nmcopolymer_unknown --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331609.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmcopolymer_unknown_thres2000_p2.h5 --det octal stat --det dual both --name 20nmcopolymer_unknown --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 20nmcopolymer_unknown --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331610.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_focus_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name 20nmPS_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331611.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_focus_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name 20nmPS_focus_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 20nmPS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331612.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmPS_focus_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name 20nmPS_focus_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 20nmPS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331613.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_focus_nofilter_thres1000_p2.h5 --det octal stat --det dual both --name FeCl3PS_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331614.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_focus_nofilter_thres1500_p2.h5 --det octal stat --det dual both --name FeCl3PS_focus_nofilter --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331615.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_focus_nofilter_thres2000_p2.h5 --det octal stat --det dual both --name FeCl3PS_focus_nofilter --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name FeCl3PS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331616.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPMMAold_thres1000_p2.h5 --det octal stat --det dual both --name 10nmPMMAold --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPMMAold --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331617.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPMMAold_thres1500_p2.h5 --det octal stat --det dual both --name 10nmPMMAold --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmPMMAold --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331618.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPMMAold_thres2000_p2.h5 --det octal stat --det dual both --name 10nmPMMAold --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmPMMAold --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331619.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_short_thres1000_p2.h5 --det octal stat --det dual both --name 10nmPS_short --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_short --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331620.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_short_thres1500_p2.h5 --det octal stat --det dual both --name 10nmPS_short --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 10nmPS_short --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331621.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/10nmPS_short_thres2000_p2.h5 --det octal stat --det dual both --name 10nmPS_short --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 10nmPS_short --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331622.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_+400_thres1000_p2.h5 --det octal stat --det dual both --name 20nmCo_+400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331623.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_+400_thres1500_p2.h5 --det octal stat --det dual both --name 20nmCo_+400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331624.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_+400_thres2000_p2.h5 --det octal stat --det dual both --name 20nmCo_+400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 20nmCo_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331625.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_+1000_thres1000_p2.h5 --det octal stat --det dual both --name FeCl3PS_+1000 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_+1000 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331626.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_+1000_thres1500_p2.h5 --det octal stat --det dual both --name FeCl3PS_+1000 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name FeCl3PS_+1000 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331627.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/FeCl3PS_+1000_thres2000_p2.h5 --det octal stat --det dual both --name FeCl3PS_+1000 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name FeCl3PS_+1000 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331628.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_-400_thres1000_p2.h5 --det octal stat --det dual both --name 20nmCo_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331629.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_-400_thres1500_p2.h5 --det octal stat --det dual both --name 20nmCo_-400 --nimages 30000 --cont --deltaehigh 1500 --deltaelow 1500 --name 20nmCo_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331630.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/new3/20nmCo_-400_thres2000_p2.h5 --det octal stat --det dual both --name 20nmCo_-400 --nimages 30000 --cont --deltaehigh 2000 --deltaelow 2000 --name 20nmCo_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331631.fep02-ib\\n')\n" + ] + } + ], + "source": [ + "for name,cmd in cmds:\n", + " print(name,cmd)\n", + " print(qsub(['eval \"$(conda shell.bash hook)\"','conda activate zimmf3',cmd],jobname=f\"p2_2_{name}\"))" + ] + }, + { + "cell_type": "code", + "execution_count": 46, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "copolymeronly python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/copolymeronly_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/copolymeronly_thres1000_p2_stats.h5 --det octal stat --det dual stat --name copolymeronly --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name copolymeronly --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331165.fep02-ib\\n')\n", + "benNi40nm python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/benNi40nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/benNi40nm_thres1000_p2_stats.h5 --det octal stat --det dual stat --name benNi40nm --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name benNi40nm --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331166.fep02-ib\\n')\n", + "20nmPS_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/20nmPS_+400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 20nmPS_+400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331167.fep02-ib\\n')\n", + "20nmPS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/20nmPS_-400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 20nmPS_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331168.fep02-ib\\n')\n", + "10nmCo_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmCo_+400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmCo_+400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331169.fep02-ib\\n')\n", + "benNi20nm python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/benNi20nm_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/benNi20nm_thres1000_p2_stats.h5 --det octal stat --det dual stat --name benNi20nm --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name benNi20nm --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331170.fep02-ib\\n')\n", + "FeCl3PS_focus python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_focus_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/FeCl3PS_focus_thres1000_p2_stats.h5 --det octal stat --det dual stat --name FeCl3PS_focus --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331171.fep02-ib\\n')\n", + "20nmSpin python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmSpin_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/20nmSpin_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 20nmSpin --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmSpin --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331172.fep02-ib\\n')\n", + "10nmPS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmPS_focus_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmPS_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331173.fep02-ib\\n')\n", + "10nmCo_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmCo_-400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmCo_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331174.fep02-ib\\n')\n", + "10nmPS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmPS_-400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmPS_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331175.fep02-ib\\n')\n", + "20nmCo_-400_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_-400_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/20nmCo_-400_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 20nmCo_-400_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331176.fep02-ib\\n')\n", + "10nmPS_-400_att_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_att_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmPS_-400_att_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmPS_-400_att_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_att_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331177.fep02-ib\\n')\n", + "10nmPS_-400_full_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_-400_full_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmPS_-400_full_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmPS_-400_full_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_-400_full_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331178.fep02-ib\\n')\n", + "10nmPS_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmPS_+400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmPS_+400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331179.fep02-ib\\n')\n", + "copolymeronly_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/copolymeronly_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/copolymeronly_focus_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name copolymeronly_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name copolymeronly_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331180.fep02-ib\\n')\n", + "10nmCo_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmCo_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmCo_focus_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmCo_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmCo_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331181.fep02-ib\\n')\n", + "FeCl3PS_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/FeCl3PS_-400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name FeCl3PS_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331182.fep02-ib\\n')\n", + "Fe10um_NPref python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/Fe10um_NPref_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/Fe10um_NPref_thres1000_p2_stats.h5 --det octal stat --det dual stat --name Fe10um_NPref --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name Fe10um_NPref --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331183.fep02-ib\\n')\n", + "10nmPS_focus_far_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_focus_far_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmPS_focus_far_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmPS_focus_far_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_focus_far_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331184.fep02-ib\\n')\n", + "20nmcopolymer_unknown python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmcopolymer_unknown_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/20nmcopolymer_unknown_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 20nmcopolymer_unknown --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmcopolymer_unknown --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331185.fep02-ib\\n')\n", + "20nmPS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmPS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/20nmPS_focus_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 20nmPS_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmPS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331186.fep02-ib\\n')\n", + "FeCl3PS_focus_nofilter python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_focus_nofilter_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/FeCl3PS_focus_nofilter_thres1000_p2_stats.h5 --det octal stat --det dual stat --name FeCl3PS_focus_nofilter --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_focus_nofilter --maxphotons 30 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331187.fep02-ib\\n')\n", + "10nmPMMAold python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPMMAold_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmPMMAold_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmPMMAold --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPMMAold --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331188.fep02-ib\\n')\n", + "10nmPS_short python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/10nmPS_short_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/10nmPS_short_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 10nmPS_short --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 10nmPS_short --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331189.fep02-ib\\n')\n", + "20nmCo_+400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_+400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/20nmCo_+400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 20nmCo_+400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_+400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331190.fep02-ib\\n')\n", + "FeCl3PS_+1000 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/FeCl3PS_+1000_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/FeCl3PS_+1000_thres1000_p2_stats.h5 --det octal stat --det dual stat --name FeCl3PS_+1000 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name FeCl3PS_+1000 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331191.fep02-ib\\n')\n", + "20nmCo_-400 python ~/zimmf/phase23.py /UserData/gorkhover/TAIS2020/nano/p1/new3/20nmCo_-400_p1.h5 /UserData/gorkhover/TAIS2020/nano/p2/stats4/20nmCo_-400_thres1000_p2_stats.h5 --det octal stat --det dual stat --name 20nmCo_-400 --nimages 30000 --cont --deltaehigh 1000 --deltaelow 1000 --name 20nmCo_-400 --maxphotons 10 --maskfile /UserData/gorkhover/TAIS2020/nano/nano_mask1.h5\n", + "(0, '2331192.fep02-ib\\n')\n" + ] + } + ], + "source": [ + "\n", + "## stats\n", + "for name,cmd in cmds:\n", + " print(name,cmd)\n", + " print(qsub(['eval \"$(conda shell.bash hook)\"','conda activate zimmf3',cmd],jobname=f\"p2_15_{name}\"))" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## crystal" + ] + }, + { + "cell_type": "code", + "execution_count": 108, + "metadata": {}, + "outputs": [], + "source": [ + "outdir='/work/gorkhover/crystal/p2/more/'\n", + "\n", + "!mkdir -p $outdir\n", + "\n", + "cmds=[]\n", + "for sample,rotstr in [\n", + " ['gaas1',\"--detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\"],\n", + " ['gaas2',\"--detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\"]\n", + "]:\n", + " for i in range(10):\n", + " cmd=f'MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/{sample}_p1.h5 {outdir}/{sample}_{i}.h5 --nimages 5000 --detz 2825 --name {sample} --job {i} {rotstr}' \n", + " cmds.append((sample,i,cmd))" + ] + }, + { + "cell_type": "code", + "execution_count": 109, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "gaas1 0 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_0.h5 --nimages 5000 --detz 2825 --name gaas1 --job 0 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61841.fep01\\n')\n", + "gaas1 1 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_1.h5 --nimages 5000 --detz 2825 --name gaas1 --job 1 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61842.fep01\\n')\n", + "gaas1 2 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_2.h5 --nimages 5000 --detz 2825 --name gaas1 --job 2 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61843.fep01\\n')\n", + "gaas1 3 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_3.h5 --nimages 5000 --detz 2825 --name gaas1 --job 3 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61844.fep01\\n')\n", + "gaas1 4 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_4.h5 --nimages 5000 --detz 2825 --name gaas1 --job 4 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61845.fep01\\n')\n", + "gaas1 5 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_5.h5 --nimages 5000 --detz 2825 --name gaas1 --job 5 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61846.fep01\\n')\n", + "gaas1 6 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_6.h5 --nimages 5000 --detz 2825 --name gaas1 --job 6 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61847.fep01\\n')\n", + "gaas1 7 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_7.h5 --nimages 5000 --detz 2825 --name gaas1 --job 7 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61848.fep01\\n')\n", + "gaas1 8 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_8.h5 --nimages 5000 --detz 2825 --name gaas1 --job 8 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61849.fep01\\n')\n", + "gaas1 9 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas1_p1.h5 /work/gorkhover/crystal/p2/more//gaas1_9.h5 --nimages 5000 --detz 2825 --name gaas1 --job 9 --detz 2834 --offsetx 28 --offsety 128 --rotx -0.4 --roty 0.1 --rotz 1.5\n", + "(0, '61850.fep01\\n')\n", + "gaas2 0 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_0.h5 --nimages 5000 --detz 2825 --name gaas2 --job 0 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61851.fep01\\n')\n", + "gaas2 1 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_1.h5 --nimages 5000 --detz 2825 --name gaas2 --job 1 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61852.fep01\\n')\n", + "gaas2 2 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_2.h5 --nimages 5000 --detz 2825 --name gaas2 --job 2 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61853.fep01\\n')\n", + "gaas2 3 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_3.h5 --nimages 5000 --detz 2825 --name gaas2 --job 3 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61854.fep01\\n')\n", + "gaas2 4 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_4.h5 --nimages 5000 --detz 2825 --name gaas2 --job 4 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61855.fep01\\n')\n", + "gaas2 5 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_5.h5 --nimages 5000 --detz 2825 --name gaas2 --job 5 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61856.fep01\\n')\n", + "gaas2 6 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_6.h5 --nimages 5000 --detz 2825 --name gaas2 --job 6 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61857.fep01\\n')\n", + "gaas2 7 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_7.h5 --nimages 5000 --detz 2825 --name gaas2 --job 7 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61858.fep01\\n')\n", + "gaas2 8 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_8.h5 --nimages 5000 --detz 2825 --name gaas2 --job 8 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61859.fep01\\n')\n", + "gaas2 9 MKL_THREADING_LAYER=GNU python /home/gorkhover/zimmf/msc/sacla/phase2c.py /UserData/gorkhover/TAIS2020/crystal/p1/parts2/gaas2_p1.h5 /work/gorkhover/crystal/p2/more//gaas2_9.h5 --nimages 5000 --detz 2825 --name gaas2 --job 9 --detz 2798 --offsetx 26 --offsety 116 --rotx -0.2 --roty 0.1 --rotz 1.1\n", + "(0, '61860.fep01\\n')\n" + ] + } + ], + "source": [ + "didnotwork=[]\n", + "for name,i,cmd in cmds:\n", + " print(name,i,cmd)\n", + " ret=qsub(['eval \"$(conda shell.bash hook)\"','conda activate ~/anaconda3/envs/zimmf4',cmd],jobname=f\"p2c4_{name}_{i}\",mem=160,threads=24)\n", + " if ret[0]!=0:\n", + " didnotwork.append((name,i,cmd))\n", + " print(ret)\n", + " else:\n", + " print(ret)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "from sacla import qsub\n", + "for name,j,cmd in cmds:\n", + " print(cmd)\n", + " print(qsub(['eval \"$(conda shell.bash hook)\"','conda activate zimmf3',cmd],jobname=f\"c_{name}_{j}\",threads=22,mem=200,queue='smp'))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## run test ##" + ] + }, + { + "cell_type": "code", + "execution_count": 36, + "metadata": {}, + "outputs": [], + "source": [ + "#!chmod +x phase27.py\n", + "!rm ~/work/testoutput_phase2.h5" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'/home/gorkhover/zimmf/msc/sacla'" + ] + }, + "execution_count": 2, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "2/final/Cu5um_focus_thres1000_cont_octal_p2.h5 --name Cu5um_focus --nimages 30000 --cont --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --name Cu5um_focus " + ] + }, + { + "cell_type": "code", + "execution_count": 35, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Process is terminated.\n" + ] + } + ], + "source": [ + "%%bash \n", + "source ~/.bashrc\n", + "time ./phase2.py /home/gorkhover/UserDatagorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5 ~/work/testoutput_phase2.h5 --pearson --singleshotcorr --deltaehigh 1000 --deltaelow 1000 --intv --cont --disc --discSettings --maskfile /arcv1/UserData/gorkhover/TAIS2020/nano/mask_assembledtiles.h5 --det dual dual both +maxphotons 3 +scatterphotons 0 +skipphotons 5 --det octal octal stat +maxphotons 3 +scatterphotons 0 +skipphotons 15 --pulsethres 450 --photonsettings \"[[3990, 8613, 9704, 11822, 16414, 17449, 18081, 19660, 24251, 25244, 26177, 27507, 32099, 33084, 34043, 34427, 34753, 35508, 39944, 40976, 41731, 43205, 45745, 46845, 49335], [0, 1, 0, 1, 2, 1, 0, 2, 3, 2, 1, 3, 4, 3, 2, 1, 3, 4, 5, 4, 3, 2, 6, 4, 5, 0]]\" --nimages 100 " + ] + }, + { + "cell_type": "code", + "execution_count": 24, + "metadata": {}, + "outputs": [], + "source": [ + "import h5py" + ] + }, + { + "cell_type": "code", + "execution_count": 25, + "metadata": {}, + "outputs": [], + "source": [ + "f=h5py.File(\"/home/gorkhover/UserDatagorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5\")" + ] + }, + { + "cell_type": "code", + "execution_count": 27, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + " attenuator\n", + " attenuator_eh_2_Al_thickness_in_meter(85017,) float32\n", + " attenuator_eh_4_Al_thickness_in_meter(85017,) float32\n", + " attenuator_eh_5_Si_thickness_in_meter(85017,) float32\n", + " attenuator_eh_5_Si_uncalibrated(85017,) float32\n", + " attenuator_oh_2_Si_thickness_in_meter(85017,) float32\n", + "\n", + " beamspectrum(85017, 1024) float32\n", + " detectors\n", + " dual\n", + " tile0\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + " tile1\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + "\n", + " octal\n", + " tile0\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + " tile1\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + " tile2\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + " tile3\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + " tile4\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + " tile5\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + " tile6\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + " tile7\n", + " absfft0\n", + " mean(513, 512) float32\n", + " n(1,) int32[8519]\n", + " std(513, 512) float32\n", + "\n", + " absfft1\n", + " mean(1024, 257) float32\n", + " n(1,) int32[8519]\n", + " std(1024, 257) float32\n", + "\n", + " bg(1024, 512) float32\n", + " data(85017, 1024, 512) int32\n", + " edgeintensity(85017, 4) float32\n", + " hist\n", + " bincenters(10203,) float64\n", + " run(40, 10203) float32\n", + " shot(85017, 10203) float32\n", + "\n", + " intensity(85017,) float32\n", + " max(1024, 512) float32\n", + " mean(1024, 512) float32\n", + " min(1024, 512) float32\n", + " n(1,) int32[85017]\n", + " singlephotoncount(1024, 512) float32\n", + " std(1024, 512) float32\n", + "\n", + "\n", + "\n", + " meta\n", + " Kalpha(1,) float64[8046.]\n", + " arguments\n", + " assembled(1,) bool[False]\n", + " bgfile(1,) object[b'/arcv1/UserData/gorkhover/TAIS2020/foils/bg/bg_918639_mixed.h5']\n", + " chunkend(1,) object[b'None']\n", + " chunkstart(1,) object[b'None']\n", + " focus_y(1,) float64[-0.00016]\n", + " inputfiles(40,) object\n", + " kalpha(1,) float64[8046.]\n", + " name(1,) object[b'Cu5um_defocus-250']\n", + " outfile(1,) object[b'/arcv1/UserData/gorkhover/TAIS2020/foils/p1/final/Cu5um_defocus-250_p1.h5']\n", + " pulsethres(1,) int64[250]\n", + " sample(1,) object[b'Cu5um']\n", + " workpath(1,) object[b'None']\n", + "\n", + " filtering\n", + " shot_ok(40, 3000) bool\n", + " thres_pulseenergy(1,) float64[0.00025347]\n", + " thres_sampleX_delta(1,) float32[1.294014e-05]\n", + " thres_sampleX_high(1,) float64[0.005069]\n", + " thres_sampleX_low(1,) float64[-0.00381955]\n", + "\n", + " focus_y(1,) float64[-0.00016]\n", + " inputfiles(40,) object\n", + " interrupted(1,) int64[-1]\n", + " name(1,) object[b'Cu5um_defocus-250']\n", + " runs(40,) object\n", + " sample(1,) object[b'Cu5um']\n", + "\n", + " motors\n", + " dualX(85017,) float32\n", + " dualZ(85017,) float32\n", + " octalX(85017,) float32\n", + " octalY(85017,) float32\n", + " octalZ(85017,) float32\n", + " profX(85017,) float32\n", + " profY(85017,) float32\n", + " profZ(85017,) float32\n", + " sampleThX(85017,) float32\n", + " sampleThY(85017,) float32\n", + " sampleThZLower(85017,) float32\n", + " sampleThZUpper(85017,) float32\n", + " sampleX(85017,) float32\n", + " sampleZ(85017,) float32\n", + " singleX(85017,) float32\n", + " singleZ(85017,) float32\n", + "\n", + " photonEnergy(85017,) float32\n", + " pulse_energy_beam_joule(85017,) float32\n", + " pulse_energy_hutch_joule(85017,) float32\n", + " tag_number_list(85017,) int64\n" + ] + } + ], + "source": [ + "browse(f)" + ] + }, + { + "cell_type": "code", + "execution_count": 25, + "metadata": {}, + "outputs": [], + "source": [ + "import h5py\n", + "import numpy as np\n", + "import matplotlib.pyplot as plt\n", + "import idi.reconstruction.simple as recon\n", + "\n", + "#o=h5py.File('/UserData/gorkhover/TAIS2020/foils/p2/new6/cont2/Fe500nm_focus_2_p2.h5','r')\n", + "o=h5py.File('/home/gorkhover/work/testp237.h5','r')\n", + "#o=h5py.File('/UserData/gorkhover/TAIS2020/foils/p2/new13/Cu20um_defocus-500_thres1000_p2.h5','r')" + ] + }, + { + "cell_type": "code", + "execution_count": 65, + "metadata": {}, + "outputs": [], + "source": [ + "def zoom(cor):\n", + " cor[cor.shape[0]//2,cor.shape[1]//2]=np.nan\n", + " plt.matshow(cor[cor.shape[0]//2-n:cor.shape[0]//2+n,cor.shape[1]//2-n:cor.shape[1]//2+n])\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 540, + "metadata": {}, + "outputs": [], + "source": [ + "def browse(obj,depth=0):\n", + " try:\n", + " if type(obj)==h5py._hl.dataset.Dataset:\n", + " print(obj.shape,obj.dtype,end='')\n", + " if np.product(obj.shape)<10: print(np.array(obj), end='')\n", + " else:\n", + " for k in obj.keys():\n", + " print('\\n',depth*' ',k,end='')\n", + " browse(obj[k],depth+1)\n", + " print()\n", + " except Exception as e:\n", + " print(e)\n", + "\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 79, + "metadata": {}, + "outputs": [], + "source": [ + "def get_thresholds(kalpha, deltaelow, deltaehigh, maxphotons, nscatter, scatter):\n", + " thresholds = tuple([\n", + " (\n", + " float(n),\n", + " float(s),\n", + " n * kalpha + s * scatter - deltaelow,\n", + " n * kalpha + s * scatter + deltaehigh,\n", + " s*scatter\n", + " )\n", + " for s in range(nscatter+1) \n", + " for n in range(maxphotons-s+1)\n", + " ][1:])\n", + " return thresholds" + ] + }, + { + "cell_type": "code", + "execution_count": 43, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "((1.0, 0.0, 5000, 7000, 0),\n", + " (2.0, 0.0, 11000, 13000, 0),\n", + " (0.0, 1.0, 10000, 12000, 11000),\n", + " (1.0, 1.0, 16000, 18000, 11000),\n", + " (2.0, 1.0, 22000, 24000, 11000),\n", + " (0.0, 2.0, 21000, 23000, 22000),\n", + " (1.0, 2.0, 27000, 29000, 22000),\n", + " (2.0, 2.0, 33000, 35000, 22000))" + ] + }, + "execution_count": 43, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "get_thresholds(6000,1000,1000,2,2,11000)" + ] + }, + { + "cell_type": "code", + "execution_count": 80, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "((1.0, 0.0, 5000, 7000, 0),\n", + " (2.0, 0.0, 11000, 13000, 0),\n", + " (0.0, 1.0, 10000, 12000, 11000),\n", + " (1.0, 1.0, 16000, 18000, 11000),\n", + " (0.0, 2.0, 21000, 23000, 22000))" + ] + }, + "execution_count": 80, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "get_thresholds(6000,1000,1000,2,2,11000)" + ] + }, + { + "cell_type": "code", + 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