diff --git a/haplotypecaller-gvcf-gatk4.wdl b/haplotypecaller-gvcf-gatk4.wdl index 680d098..40e4463 100644 --- a/haplotypecaller-gvcf-gatk4.wdl +++ b/haplotypecaller-gvcf-gatk4.wdl @@ -39,7 +39,7 @@ workflow HaplotypeCallerGvcf_GATK4 { Boolean make_gvcf = true Boolean make_bamout = false - String gatk_docker = "us.gcr.io/broad-gatk/gatk:4.1.9.0" + String gatk_docker = "us.gcr.io/broad-gatk/gatk:4.2.0.0" String gatk_path = "/gatk/gatk" String gitc_docker = "us.gcr.io/broad-gotc-prod/genomes-in-the-cloud:2.4.7-1603303710" String samtools_path = "samtools"