Jenkins integration tests continue after error

[jonca79]

Twist_Solid/.tests/jenkins/Jenkinsfile

Line 70 in bcb8b2d

nextflow run validation_workflow/validate_result.nf

Even when the snakemake pipeline fails the integration tests continues and it is only the last step (nextflow) that determines the reported error code.

Obs. When solving this issue the pipeline on Jenkins will always fail due to an Jenkins specific error with the cnv_html_report:
Unable to get version (from tags) or an active_branch
Unable to get version (from tags) or an active_branch
Unable to get version (from tags) or an active_branch
Waiting at most 60 seconds for missing files.
Missing files after 60 seconds. This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait:
/home/jenkins/.cache/snakemake/snakemake/source-cache/runtime-cache/tmp41m7i_0q/file/beegfs-storage/workspace/Twist_Solid_Multibranch_develop/workflow/templates/cnv_html_report/03-results-table.js
/home/jenkins/.cache/snakemake/snakemake/source-cache/runtime-cache/tmp41m7i_0q/file/beegfs-storage/workspace/Twist_Solid_Multibranch_develop/workflow/templates/cnv_html_report/style.css