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QC #84

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jonca79 opened this issue Apr 28, 2022 · 0 comments

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jonca79 commented Apr 28, 2022 •

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Rule: exon_coverage (Use mosdepth instead of existing script)
Rule: housekeeping_gene_coverage (Use mosdepth instead of existing script)
Container: assign singularity image
Conda: assign conda environment
Schema: add rules to schema
Config: add to config
Common: add output files (fastqc, multiqc, mosdepth, samtools: stats, picard: CollectHsMetrics, CollectInsertSizeMetrics, CollectAlignmentSummaryMetrics, exon coverage, housekeeping gene coverage)

jonca79 added the enhancement label

jonca79 added this to the Migrate RNA milestone

Smeds assigned Smeds and unassigned Smeds

jonca79 self-assigned this

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