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Extract reads of species of interests #6

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LilyAnderssonLee opened this issue Dec 20, 2023 · 1 comment

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LilyAnderssonLee commented Dec 20, 2023

Description of feature

Extract reads for viruses or a list of species of interests

For Kraken2 and Centrifuge, use extract_kraken_reads.py from krakentools. Add it as a nf-core module
For Diamond, custom script.

LilyAnderssonLee added the enhancement label

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LilyAnderssonLee commented Jun 5, 2024

Solved in #15

LilyAnderssonLee closed this as completed

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