From 2c279ca55804c9e2f124e7061a76fbf53061df6e Mon Sep 17 00:00:00 2001
From: Taylor Firman <tefirman@gmail.com>
Date: Fri, 9 Feb 2024 14:23:34 -0800
Subject: [PATCH] Adding samtools to bwa Docker contaiiner

---
 Dockerfile_bwa | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/Dockerfile_bwa b/Dockerfile_bwa
index 6e9c471..0686511 100644
--- a/Dockerfile_bwa
+++ b/Dockerfile_bwa
@@ -12,3 +12,9 @@ WORKDIR /bwa-0.7.17
 RUN make CC='gcc -fcommon'
 WORKDIR /
 RUN rm -rf bwa-0.7.17 bwa-0.7.17.tar.bz2
+RUN wget https://github.com/samtools/samtools/releases/download/1.11/samtools-1.11.tar.bz2
+RUN tar -jxf samtools-1.11.tar.bz2
+WORKDIR /samtools-1.11
+RUN ./configure && make && make install
+WORKDIR /
+RUN rm -rf samtools-1.11 samtools-1.11.tar.bz2