From 84f83d24b0c96fb6736e0073e2847d1e1062f158 Mon Sep 17 00:00:00 2001
From: jaime <jcernudagarcia@hawk.iit.edu>
Date: Tue, 31 Oct 2023 20:37:57 -0500
Subject: [PATCH] Jarvis configs have proper data replacements on grey scott

---
 .../adios2_gray_scott/config/hermes.xml            | 14 ++++++++------
 .../adios2_gray_scott/config/operator.yaml         | 12 ++++++------
 .../jarvis_coeus/adios2_gray_scott/config/var.yaml | 10 ++++------
 .../adios2_gray_scott_post/config/hermes.xml       | 14 ++++++++------
 .../adios2_gray_scott_post/config/operator.yaml    | 12 ++++++------
 .../adios2_gray_scott_post/config/var.yaml         | 10 ++++------
 .../jarvis_coeus/io_comp/config/hermes.xml         |  3 ---
 7 files changed, 36 insertions(+), 39 deletions(-)

diff --git a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/hermes.xml b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/hermes.xml
index 162d6097..405e2513 100644
--- a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/hermes.xml
+++ b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/hermes.xml
@@ -10,9 +10,10 @@
             <parameter key="PluginName" value="hermes" />
             <parameter key="PluginLibrary" value="hermes_engine" />
 
-            <parameter key="VarFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/var.yaml"/>
-            <parameter key="OPFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/operator.yaml"/>
-            <parameter key="db_file" value="/mnt/nvme/jcernudagarcia/metadata.db"/>
+            <parameter key="ppn" value='##PPN##'/>
+            <parameter key="VarFile" value="##VARFILE##"/>
+            <parameter key="OPFile" value="##OPFILE##"/>
+            <parameter key="db_file" value="##DBFILE##"/>
         </engine>
     </io>
 
@@ -25,9 +26,10 @@
             <parameter key="PluginName" value="hermes" />
             <parameter key="PluginLibrary" value="hermes_engine" />
 
-            <parameter key="VarFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/var.yaml"/>
-            <parameter key="OPFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/operator.yaml"/>
-            <parameter key="db_file" value="/mnt/nvme/jcernudagarcia/metadata.db"/>
+            <parameter key="ppn" value='##PPN##'/>
+            <parameter key="VarFile" value="##VARFILE##"/>
+            <parameter key="OPFile" value="##OPFILE##"/>
+            <parameter key="db_file" value="##DBFILE##"/>
         </engine>
     </io>
 
diff --git a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/operator.yaml b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/operator.yaml
index 8a3c9aa1..fe9abdc8 100644
--- a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/operator.yaml
+++ b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/operator.yaml
@@ -1,6 +1,6 @@
-variable1:
-  operator1: function1
-  operator2: function2
-variable2:
-  operator3: function3
-  operator4: function4
\ No newline at end of file
+'U':
+  operator1: 'min'
+  operator2: 'max'
+'V':
+  operator1: 'min'
+  operator2: 'max'
\ No newline at end of file
diff --git a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/var.yaml b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/var.yaml
index 8a3c9aa1..0333b877 100644
--- a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/var.yaml
+++ b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott/config/var.yaml
@@ -1,6 +1,4 @@
-variable1:
-  operator1: function1
-  operator2: function2
-variable2:
-  operator3: function3
-  operator4: function4
\ No newline at end of file
+'U':
+  weight: 0.5
+'V':
+  weight: 0.5
diff --git a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/hermes.xml b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/hermes.xml
index a7776c7b..ec6149d4 100644
--- a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/hermes.xml
+++ b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/hermes.xml
@@ -10,9 +10,10 @@
             <parameter key="PluginName" value="hermes" />
             <parameter key="PluginLibrary" value="hermes_engine" />
 
-            <parameter key="VarFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/var.yaml"/>
-            <parameter key="OPFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/operator.yaml"/>
-            <parameter key="db_file" value="/mnt/nvme/jcernudagarcia/metadata.db"/>
+            <parameter key="ppn" value='##PPN##'/>
+            <parameter key="VarFile" value="##VARFILE##"/>
+            <parameter key="OPFile" value="##OPFILE##"/>
+            <parameter key="db_file" value="##DBFILE##"/>
         </engine>
     </io>
 
@@ -25,9 +26,10 @@
             <parameter key="PluginName" value="hermes_out" />
             <parameter key="PluginLibrary" value="hermes_engine" />
 
-            <parameter key="VarFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/var.yaml"/>
-            <parameter key="OPFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/operator.yaml"/>
-            <parameter key="db_file" value="/mnt/nvme/jcernudagarcia/metadata.db"/>
+            <parameter key="ppn" value='##PPN##'/>
+            <parameter key="VarFile" value="##VARFILE##"/>
+            <parameter key="OPFile" value="##OPFILE##"/>
+            <parameter key="db_file" value="##DBFILE##"/>
         </engine>
 
         <!-- Compress variables -->
diff --git a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/operator.yaml b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/operator.yaml
index 8a3c9aa1..fe9abdc8 100644
--- a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/operator.yaml
+++ b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/operator.yaml
@@ -1,6 +1,6 @@
-variable1:
-  operator1: function1
-  operator2: function2
-variable2:
-  operator3: function3
-  operator4: function4
\ No newline at end of file
+'U':
+  operator1: 'min'
+  operator2: 'max'
+'V':
+  operator1: 'min'
+  operator2: 'max'
\ No newline at end of file
diff --git a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/var.yaml b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/var.yaml
index 8a3c9aa1..0333b877 100644
--- a/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/var.yaml
+++ b/test/jarvis_coeus/jarvis_coeus/adios2_gray_scott_post/config/var.yaml
@@ -1,6 +1,4 @@
-variable1:
-  operator1: function1
-  operator2: function2
-variable2:
-  operator3: function3
-  operator4: function4
\ No newline at end of file
+'U':
+  weight: 0.5
+'V':
+  weight: 0.5
diff --git a/test/jarvis_coeus/jarvis_coeus/io_comp/config/hermes.xml b/test/jarvis_coeus/jarvis_coeus/io_comp/config/hermes.xml
index 89dbf22e..e0fa7ec9 100644
--- a/test/jarvis_coeus/jarvis_coeus/io_comp/config/hermes.xml
+++ b/test/jarvis_coeus/jarvis_coeus/io_comp/config/hermes.xml
@@ -6,9 +6,6 @@
             <parameter key="PluginLibrary" value="hermes_engine" />
 
             <parameter key="ppn" value='##PPN##'/>
-<!--            <parameter key="VarFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/var.yaml"/>-->
-<!--            <parameter key="OPFile" value="/home/jcernudagarcia/jarvis-pipelines/coeus_io_comp/io_comp/operator.yaml"/>-->
-<!--            <parameter key="db_file" value="/mnt/nvme/jcernudagarcia/metadata.db"/>-->
             <parameter key="VarFile" value="##VARFILE##"/>
             <parameter key="OPFile" value="##OPFILE##"/>
             <parameter key="db_file" value="##DBFILE##"/>