forked from ESMCI/cime
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathChangeLog
12944 lines (12074 loc) · 549 KB
/
ChangeLog
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
======================================================================
Originator: Chris Fischer
Date: 5-22-2018
Tag: cime_cesm2_0_rel_03
Answer Changes: None
Tests: scripts_regression_tests, build tests on Cori.
Dependencies:
Brief Summary: Third release candidate.
- Update environment modules for Cori.
- Change PRE.f09_f09.ADESP_TEST.hobart_nag test to f19_f19.
- Tweaks to cism-specific documentation.
- Update for Sphinx v1.7 and doc version 5.6.
- More doc updates.
- Maint 5.6 - documentation updates.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
ed9ced8 Merge pull request #2619 from ESMCI/fischer/nersc
c1dade4 Merge pull request #2618 from ESMCI/fischer/testfix
1f41bc6 Merge pull request #2617 from billsacks/update_cism_doc
08f12ea Merge pull request #2616 from bertinia/maint-5.6
72ed273 Merge pull request #2615 from ESMCI/mvertens/more_doc_updates
7049dab Merge pull request #2614 from bertinia/maint-5.6
Modified files: git diff --name-status [previous_tag]
M .gitignore
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M doc/Makefile
M doc/README
D doc/source/README
M doc/source/conf.py
M doc/source/users_guide/building-a-case.rst
A doc/source/users_guide/cime-change-namelist.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/grids.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/machine.rst
M doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/testing.rst
M doc/source/users_guide/timers.rst
M doc/source/users_guide/troubleshooting.rst
M doc/source/users_guide/unit_testing.rst
D doc/source/users_guide/use_cases/basics-a-basic-example.rst
D doc/source/users_guide/use_cases/basics-setting-up-a-branch-or-hybrid-run.rst
D doc/source/users_guide/use_cases/cesm-nml.rst
D doc/source/users_guide/use_cases/datamod-nml.rst
D doc/source/users_guide/use_cases/driver-nml.rst
D doc/source/users_guide/use_cases/namelist-gen.rst
D doc/source/users_guide/use_cases/use-cases.rst
A doc/source/users_guide/workflows.rst
M doc/tools_autodoc.cfg
M doc/tools_autodoc.py
M scripts/Tools/xmlquery
D scripts/manage_pes
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-17-2018
Tag: cime_cesm2_0_rel_02
Answer Changes: Round Off for Cheyenne gnu
Tests: scripts_regression_tests, prealpha gnu tests on cheyenne
Dependencies:
Brief Summary:
- Update Cheyenne gnu compiler to 7.3.0
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
Merge pull request #2611 from ESMCI/fischer/gnu7
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-17-2018
Tag: cime_cesm2_0_rel_01
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Move cam section out of config archive.
- Add commas to output using --value.
- Fix multisubmit tests were not resubmitting.
- A new script to add additional metadata for stat ensemble test.
- Fix formatting issue.
- Update iyear for 2000 runs.
- Merge branch 'master' of github.com:ESMCI/cime
- These grids are needed for cime standalone testing.
- Updated the wrappers for the ESMF mapping tools to work on NCAR machines.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
950cda0 Merge pull request #2608 from jedwards4b/config_archive_dist
2e997e0 Merge pull request #2607 from jedwards4b/xmlquery_multivalue
f1d501f Merge pull request #2600 from jedwards4b/test_issues
5c256ec Merge pull request #2582 from jedwards4b/stattest_add_metadata
8ce38a4 fix formatting issue
6c53cfc Merge pull request #2594 from jedwards4b/orb_iyear_2000
c04da3c Merge branch 'master' of github.com:ESMCI/cime
166a40c these grids are needed for cime standalone testing
7cef855 Merge pull request #2589 from mnlevy1981/mlevy/mapping_on_geyser
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M scripts/Tools/xmlquery
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/test_scheduler.py
M src/components/data_comps/datm/datm_comp_mod.F90
M src/components/data_comps/datm/mct/atm_comp_mct.F90
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M tools/mapping/check_maps/README
M tools/mapping/check_maps/check_map.sh
M tools/mapping/check_maps/src/ESMF_RegridWeightGenCheck.F90
M tools/mapping/check_maps/src/Makefile
M tools/mapping/gen_domain_files/src/.gitignore
M tools/mapping/gen_domain_files/src/Makefile
A tools/mapping/gen_mapping_files/.gitignore
M tools/mapping/gen_mapping_files/README
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/.gitignore
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/README
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/create_ESMF_map.sh
D tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/regridbatch.yellowstone.sh
M tools/mapping/gen_mapping_files/gen_cesm_maps.sh
M tools/mapping/gen_mapping_files/runoff_to_ocn/.gitignore
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/Makefile
M tools/mapping/map_field/.gitignore
M tools/mapping/map_field/README
M tools/mapping/map_field/src/Makefile
M tools/statistical_ensemble_test/README
A tools/statistical_ensemble_test/addmetadata.sh
A tools/statistical_ensemble_test/ensemble.py
A tools/statistical_ensemble_test/single_run.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-14-2018
Tag: cime5.6.7
Answer Changes: None
Tests: scripts_regression_tests, xmlquery --listall --file env_run.xml
Dependencies:
Brief Summary:
- xmlquery fix.
- Fixes an issue when selecting mpilib on cheyenne.
- Fixed some print format bugs left over from the string rewrite of a year ago.
- Documentation updates, including major updates to --help for scripts.
- Need to append config files.
- Get model_version working.
- Adds T85_T85_mg17 grid.
- Correct spelling of protocol.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5a54b88 Merge pull request #2588 from jedwards4b/xmlquery_fix
0b07cb5 Merge pull request #2591 from jedwards4b/configure_mpilib
5f4c8e4 Merge pull request #2586 from gold2718/pelayout_fixes
6ebcd23 Merge pull request #2585 from ESMCI/mvertens/documentation_updates
940e29c need this to append config files
72a1cf6 Merge pull request #2579 from ekluzek/clm50r1/cime5.6.3
b86853d Merge pull request #2575 from jedwards4b/newgrid
fcebaad Merge pull request #2571 from jedwards4b/misspelling_protocol
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_inputdata.xml
M config/e3sm/config_inputdata.xml
M config/xml_schemas/config_inputdata.xsd
M doc/source/conf.py
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/cime-config.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/testing.rst
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.qstatus
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/pelayout
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M scripts/query_testlists
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M tools/configure
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-02-2018
Tag: cime5.6.3
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Fix config write of logical.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
974839b fix config write of logical
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/case.submit
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-01-2018
Tag: cime5.6.2
Answer Changes: None
Tests: load_balancing_test.py
hand tested create_newcase --case foo --compset QSC6 --res f19_f19_mg17
Dependencies:
Brief Summary:
- Refine distinction of E vs Q compset.
- Update load balance tool.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b2a19cd Merge pull request #2525 from jedwards4b/better_distinguish_compset_Q_from_E
28b8634 Merge pull request #2520 from ESMCI/sarich/update-loadbalancingtool
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/case/case.py
M tools/load_balancing_tool/load_balancing_submit.py
M tools/load_balancing_tool/tests/load_balancing_test.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-01-2018
Tag: cime5.6.1
Answer Changes: None, PR #2195 has roundoff for code not currently used.
Tests: scripts_regression_tests, code_checker, by-hand
Dependencies:
Brief Summary:
- Refine cheyenne retry method.
- Save submit options for resubmit.
- Need schema description for NODE_FAIL_REGEX.
- Use nodefail code for cheyenne.
- Make st_archive handle DART's restart history files.
- Check input logic fix.
- Only check for rundir if not a test.
- Jgfouca/branch for acme split 2018-04-26.
- Correct equations of the form **(1/3) to be **(1.0_R8/3.0_R8) to evaluate correctly.
- Remove debug print statements.
- Revert change to cheyenne mpt.
- Remove manage_testlist.
- Testreporter fix.
- Match entire string for XML attribute selectors for env_mach_specific.
- Fix undefined variable in some circumstances.
- wait_for_tests needs to upload case2 logs if there are some
- Another fix for testreporter.py.
User interface changes:
- manage_testlist was removed.
- Changes to matching behavior in env_mach_specific.
- New option to wait_for_tests.
PR summary: git log --oneline --first-parent [previous_tag]..master
5af0e02 Merge pull request #2516 from jedwards4b/refine_retry
5e8a173 Merge pull request #2518 from jedwards4b/save_submit_options
1d7a27d need schema description for NODE_FAIL_REGEX
879249b Merge pull request #2509 from jedwards4b/cheyenne_nodefail
40cf173 Merge pull request #2491 from kdraeder/dart_rh_files
988eff2 Merge pull request #2501 from jedwards4b/check_input_logic_fix
7ee7a0d Merge pull request #2508 from jedwards4b/test_init_fix
fbe0814 Merge pull request #2505 from ESMCI/jgfouca/branch-for-acme-split-2018-04-26
8977e55 Merge pull request #2195 from jedwards4b/diurnal_atmocn_flux_bugfix
4e489b7 remove debug print statements
438e1f0 revert change to cheyenne mpt
2e0ba3b Merge pull request #2503 from ESMCI/fischer/rm_manage_testlist
cf19590 Merge pull request #2502 from ESMCI/fischer/testreporter_fix
1a7dac9 Merge pull request #2499 from ESMCI/jgfouca/match_entire_string
71be68f Fix undefined variable in some circumstances
6673d6a Merge pull request #2498 from ESMCI/jgfouca/wait_for_tests_case2
8360ddc Merge pull request #2494 from ESMCI/fischer/test_reporter
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
M config/e3sm/config_inputdata.xml
M config/e3sm/machines/Depends.titan.pgi
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
M config/e3sm/tests.py
A config/e3sm/usermods_dirs/README
D config/e3sm/usermods_dirs/b1850/shell_commands
D config/e3sm/usermods_dirs/b1850_cism/include_user_mods
D config/e3sm/usermods_dirs/b1850_cism/user_nl_cism
M config/xml_schemas/config_machines.xsd
M doc/source/users_guide/testing.rst
M scripts/Tools/case.submit
M scripts/Tools/jenkins_generic_job
M scripts/Tools/wait_for_tests
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/get_tests.py
D scripts/manage_testlists
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-19-2018
Tag: cime5.6.0
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Don't access data servers if no data is needed.
- Add a test of the st_archive capability.
- Improve help message for resubmitting to dash.
- Simple compare improvement.
- Force the NODEFAIL test to run on the cheyenne regular queue.
- Download refcase from servers for hybrid.
- Add a warning if an unsupported testlist.xml is encountered.
- Replace TOTALPES with total_tasks.
- Fix massive misuse of TOTALPES for mpi -np all across e3sm.
- Fix test_scheduler's computation of procs needed for a test.
- Transition CIME to using a custom util for copying files.
- Minor fix to help msgs for options for e3sm mgmt tools.
User interface changes:
- case.st_archive now has a --test option.
PR summary: git log --oneline --first-parent [previous_tag]..master
0cd58a7 Merge pull request #2489 from jedwards4b/nodatanoserver
aeb0f47 Merge pull request #2470 from jedwards4b/st_archive_test
f1c2759 Improve help message for resubmitting to dash
afc640c Merge pull request #2487 from jedwards4b/simple_compare_improvement
9410812 Merge pull request #2486 from jedwards4b/nodefail_fix
d3c73b7 Merge pull request #2481 from jedwards4b/cid_decesm
b0afec2 Merge pull request #2482 from jedwards4b/testlist_format
3874d08 replace TOTALPES with total_tasks
28265be Fix massive misuse of TOTALPES for mpi -np all across e3sm
9344b16 Merge pull request #2479 from ESMCI/jgfouca/fix_test_sched_procs_needed
f48c994 Merge pull request #2475 from ESMCI/jgfouca/safer_copy
adae0ae Minor fix to help msgs for options for e3sm mgmt tools
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.st_archive
M config/e3sm/config_archive.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/template.st_archive
M config/xml_schemas/config_archive.xsd
M scripts/Tools/e3sm_cime_merge
M scripts/Tools/e3sm_cime_split
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/archive.py
A scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_cmpgen_namelists.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/locked_files.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-17-2018
Tag: cime5.4.0-alpha.30
Answer Changes: None
Tests: scripts_regression_tests, code checker
Dependencies:
Brief Summary:
- Change the CESM inputdata server precedence order to gridftp, svn, ftp, wget.
- Fix totalpes to properly include threads.
- Refactor BUILD_THREADED case value.
User interface changes:
- New FORCE_BUILD_THREADED.
PR summary: git log --oneline --first-parent [previous_tag]..master
9af0120 Merge pull request #2477 from ESMCI/fischer/gftp_svn_ftp
d556876 Merge pull request #2465 from jedwards4b/fix_totalpes
ed78b14 Merge pull request #2466 from ESMCI/jgfouca/refactor_build_threaded
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_inputdata.xml
M config/cesm/machines/config_batch.xml
M config/config_tests.xml
M scripts/Tools/Makefile
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_utils.py
M scripts/manage_pes
M scripts/manage_testlists
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.pio
M src/drivers/mct/cime_config/config_component.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-13-2018
Tag: cime5.4.0-alpha.29
Answer Changes: None
Tests: scripts_regression_tests
code_checker, testing by hand
Dependencies:
Brief Summary:
- Fix variable initialization.
- Add model doi url to seq_infodata and to cpl history global attributes.
- Remove the LOGDIR variable and stop copying logs back to the case directory.
- Fix env_mach_specific.sh file when module init is None.
- Support renamed glimmer-cism directory; add README files to SourceMods directories.
- Add f10_f10_mg37 grid.
- Update casename restrictions.
- Update statistical ensemble test for new verison of CESM.
- Add PEM test to cime developer.
- Add inputdata servers for grid ftp, ftp, and wget.
- Use --no-logging in call to checkout_externals.
- Add support for stampede2-skx and stampede2-knl at TACC.
- split_test_py
- Merge commit '20e3277dd143e4058ffa0ef610180c199cbb6ea1'
- E3SM split.
- PEA and PEM need to call case_setup for case2.
- Revert small piece of #2299.
- Fixes the potential leak reported by address sanitizer in PIO.
- Reorganize Users Guide part 1 and 2 content.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
057e8a5 fix variable initialization
4913315 Merge pull request #2468 from ESMCI/mvertens/model_doi_url
37985f4 Merge pull request #2461 from jedwards4b/remove_logdir
f1f498f Merge pull request #2464 from ESMCI/jgfouca/never_source_none
b16ec34 Merge pull request #2462 from billsacks/rename_glimmer_cism_v2
0cead4e Merge pull request #2463 from ESMCI/fischer/f10_f10_mg37
08e05e2 Merge pull request #2460 from jedwards4b/update_casename_restrictions
578a7ab Merge pull request #2447 from allibco/master
356cec0 Merge pull request #2449 from ESMCI/jgfouca/add_pem_test_to_cimedev
a1d7814 Merge pull request #2439 from jedwards4b/addgridftp
0126382 Merge pull request #2444 from billsacks/manic_no_logging
dd58d01 Merge pull request #2440 from ESMCI/fischer/stampede2
9febe47 Merge branch 'jgfouca/split_test_py'
35a70fc Merge commit '20e3277dd143e4058ffa0ef610180c199cbb6ea1'
b06a755 Merge pull request #2433 from ESMCI/jgfouca/branch-for-acme-split-2018-04-09
f18bc36 Merge pull request #2437 from jedwards4b/fixpeaandpem
826c8ec Merge pull request #2434 from ESMCI/jgfouca/minor_seq_comm_mct_revert
35ce6f1 Merge pull request #2432 from ESMCI/mfdeakin-sandia/fix_pio_reported_leak
67088a3 Merge pull request #2407 from ESMCI/rljacob/docs/reorg-ug
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_inputdata.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
A config/e3sm/machines/Depends.summit.ibm
A config/e3sm/machines/Depends.theta.intel
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
D config/e3sm/testmods_dirs/allactive/cam/cosplite/user_nl_cam
D config/e3sm/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/cam/cosplite_nhtfrq5/user_nl_cam
D config/e3sm/testmods_dirs/allactive/cam/cosplite_nhtfrq5/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
D config/e3sm/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
D config/e3sm/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/cam/rtm_null/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/clm/betr/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/clm/bgcexp/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/bgcexp/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/clm/bgcinterface/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/eca/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/fates/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/rd/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/vst/user_nl_clm
D config/e3sm/testmods_dirs/allactive/drv/y100k
D config/e3sm/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/v1cmip6/shell_commands
D config/e3sm/testmods_dirs/allactive/v1cmip6/xmlchange_cmnds
A config/e3sm/tests.py
M config/xml_schemas/config_inputdata.xsd
M doc/source/index.rst
D doc/source/users_guide/adding-cases.rst
D doc/source/users_guide/case-basics.rst
A doc/source/users_guide/cime-config.rst
M doc/source/users_guide/cime-internals.rst
A doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
D doc/source/users_guide/creating-new-compsets.rst
D doc/source/users_guide/customizing-a-case.rst
A doc/source/users_guide/grids.rst
M doc/source/users_guide/index.rst
A doc/source/users_guide/machine.rst
D doc/source/users_guide/optimizing-processor-layout.rst
A doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/testing.rst
A doc/source/users_guide/timers.rst
M doc/source/users_guide/use_cases/basics-a-basic-example.rst
D doc/source/users_guide/use_cases/basics-mpi-example.rst
A doc/source/users_guide/use_cases/cesm-nml.rst
A doc/source/users_guide/use_cases/datamod-nml.rst
A doc/source/users_guide/use_cases/driver-nml.rst
A doc/source/users_guide/use_cases/namelist-gen.rst
M doc/source/users_guide/use_cases/use-cases.rst
M scripts/Tools/Makefile
M scripts/Tools/list_e3sm_tests
D scripts/Tools/update_e3sm_tests
M scripts/create_test
M scripts/lib/CIME/Servers/__init__.py
M scripts/lib/CIME/Servers/ftp.py
A scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/SystemTests/pea.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
A scripts/lib/get_tests.py
D scripts/lib/update_e3sm_tests.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/externals/pio1/pio/piodarray.F90.in
M src/share/timing/ChangeLog
M src/share/timing/gptl.h
M src/share/timing/private.h
M tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.sh
M tools/statistical_ensemble_test/single_run.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-06-2018
Tag: cime5.4.0-alpha.28
Answer Changes: None
Tests: ERI.f09_g17.B1850.cheyenne_intel.allactive-defaultio
scripts_regression_tests.py
code_checker
Dependencies:
Brief Summary:
- py3 fix
- Fix for ERI test.
- More fixes for archiver and tests.
- cime_bisect improvements.
- ERS and ERI tests need skip_pnl=False.
- More fixes related to cesm testing.
- CESM test fixes.
- Refactor crucial run_sub_or_cmd method.
- Restore shell batch capability.
User interface changes:
- New custom script option.
PR summary: git log --oneline --first-parent [previous_tag]..master
35fd3d1 py3 fix
6c6d3b5 Merge pull request #2429 from jedwards4b/eri_fix
83ef1ba Merge pull request #2426 from jedwards4b/archiver_and_test_fixes
58f020d Merge pull request #2425 from ESMCI/jgfouca/cime_bisect_improvements
3c3fdeb Merge pull request #2424 from jedwards4b/cesm_sta_fixes
603d5da Merge pull request #2423 from jedwards4b/cesm_sta_fixes
fc83e87 Merge pull request #2422 from jedwards4b/cesm_sta_fixes
7602f4b Merge pull request #2420 from ESMCI/jgfouca/refactor_run_sub_or_cmd
d9e3cdf Merge pull request #2419 from ESMCI/jgfouca/restore_shell_batch
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M scripts/Tools/cime_bisect
M scripts/Tools/mkSrcfiles
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/irt.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M src/drivers/mct/cime_config/config_archive.xml
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-03-2018
Tag: cime5.4.0-alpha.27
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Avoid encode error.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
018c8e9 avoid encode error
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/test_scheduler.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-02-2018
Tag: cime5.4.0-alpha.26
Answer Changes: None
Tests: scripts_regression_tests
high-res couple runs on Theta and Cori-KNL
./create_test cime_developer on hobart
hand testing
e3sm_developer
code_checker
Dependencies:
Brief Summary:
- Remove the run_e3sm testing scripts from the CIME repo.
- Fix pylint
- Update hobart queue limits.
- Allow env vars to be unresolved.
- Add mosart restart history to archive list.
- Improve cprnc build.
- External script handling.
- Update MPI message tags in coupler-component exchanges.
- Always downscale walltime for tests.
- st_archive the DART restart history files.
- Do not make unnecessary env_batch jobs or batch job scripts.
- Add unofficial support for shell version of case.run batch script.
- Remove test mod from cime_developer PET test.
- Only set and check glcrun_avg_alarm if glc_prognostic is true.
- Branch for acme split 2018-03-27.
- Allow case_diff to work on cases that are not tests.
- Locals method did not work in py3, using getattr instead works in both.
- env_mach_specific was coded to always try to combine module operations.
Instead, it should only do that for "module" module systems.
- Rearrange case subdirectory.
- Remove text 'ccsm' and 'cesm' and replace appropriately.
- Add comment.
- Permit IOErrors as well as OSErrors when trying to copy crpnc log.
- Update MCT to 2.10rc2.
- Make case tools part of the Case object.
- Cleanup acme -> e3sm references in rst documentation.
- Add an A and X compset test to aux_cime_baselines.
- Compare two case setup.
- Remove old pointclm directory.
- Update key concepts documentation.
- Fix skip-pnl for tests.
- Order e3sm test list by runtime.
- Update to newer version of cprnc on hobart.
- Support full matching restrictions for batch directives.
- Ignore files beginning in test_.
- More updates to e3sm cime mgmt.
- Rename and reorg upper level contents.
- Move example of query_config to introduction.
- Add switch to list of module actions that cannot be batched.
- Improve create_test error message.
- Allow custom batch directive prefixes.
- Provide infrastructure to allow single column model to run with SE dycore.
- Branch for acme split 2018-03-13.
- Add better output to cime mgmt tool.
- Add stack size modifier to hobart.
- Add ability to xmlquery derived attributes.
- Modify regex for hobart to work on compute nodes.
- Make sure to clean repo before doing cime updates.
- st archive/encapsulate datetime.
- lawrencium machine cesm entries.
- Add a CONTRIBUTING file welcoming contributions and giving some brief guidance.
- Documentation updates for user customization.
- Fix XML errors in config_archive for E3SM.
- Implement improvements to st_archive regular expressions.
- Remove the run_e3sm testing scripts from the CIME repo.
User interface changes:
- env_archive.xml
- .case.run.sh file generated for E3SM.
- New selectors allowed for batch directives.
- Source code files beginning in test_ will be ignored in build.
- New prefix attribute available for batch directives.
- xmlquery will now accept derived attributes.
- Users may run on lawrencium lr3/lr2.
- In env_archive.xml.
PR summary: git log --oneline --first-parent [previous_tag]..master
de9dc73 Merge pull request #2418 from ESMCI/mfdeakin-sandia/rm_run_e3sm_testing
e9e89bc Fix pylint
150db63 Merge pull request #2362 from mnlevy1981/cesm/hobart_updates
bf467f3 Merge pull request #2412 from jedwards4b/allow_unresolved_envvars
6605d4d add mosart restart history to archive list
6652100 Merge pull request #2417 from jedwards4b/cprnc_build
ed4130b Merge pull request #2413 from jedwards4b/external_script_handling
020fd34 Merge pull request #2397 from ESMCI/azamat/update-msgtag-in-cpl-comp-exchanges
43bfaef Merge pull request #2410 from ESMCI/jgfouca/downscale_walltime_force_queue
8799abc Merge pull request #2415 from kdraeder/dart_rest_hist
7d9c9c5 Merge pull request #2405 from ESMCI/jgfouca/cleanup_envbatch_and_batch_scripts
74696ed Merge pull request #2386 from ESMCI/jgfouca/e3sm_bash_batch
5539ece Remove test mod from cime_developer PET test
39fd78e Merge pull request #2404 from billsacks/glcrun_avg_alarm
356fda0 Merge pull request #2406 from ESMCI/jgfouca/branch-for-acme-split-2018-03-27
19675f9 Merge pull request #2398 from ESMCI/jgfouca/fix_case_diff_newcase
07a6b94 Merge pull request #2400 from jedwards4b/py3_fix
04929cf Merge pull request #2396 from ESMCI/jgfouca/fix_soft_env_files
e425f67 Merge pull request #2389 from jedwards4b/rearrange_case
c1a43b2 Merge pull request #2392 from jedwards4b/deccsmize
1178fe3 Add coment
6ea8e9e Permit IOErrors as well as OSErrors when trying to copy crpnc log
ac82489 Merge pull request #2374 from ESMCI/rljacob/update-mct-2.10rc2
0ca70da Merge pull request #2382 from jedwards4b/compare_two_case_setup
bbf8938 Merge pull request #2384 from bertinia/master
81674ac Merge pull request #2383 from ESMCI/fischer/aux_cime
d8c4c98 Merge pull request #2378 from jedwards4b/compare_two_case_setup
191d9f2 Merge pull request #2380 from ESMCI/rljacob/remove-old-pointclm
aca08fb Merge pull request #2370 from ESMCI/rljacob/update-concepts
c3b080b Merge pull request #2373 from ESMCI/jgfouca/fix_skip_pnl_tests
8fc1332 Merge pull request #2372 from ESMCI/jgfouca/create_test_order_tests
02d9896 Merge pull request #2371 from ESMCI/fischer/cprnc
8f4dadd Merge pull request #2369 from ESMCI/jgfouca/support_full_matching_for_batch_directives
5dc8b87 Merge pull request #2366 from jedwards4b/mkSrcchange
18ca549 Merge pull request #2367 from ESMCI/jgfouca/more_updates_to_e3sm_cime_mgmt
e952232 Merge pull request #2365 from ESMCI/rljacob/update-contents
1f355e1 Merge pull request #2364 from ESMCI/rljacob/move-querydoc
8fce4aa Add switch to list of module actions that cannot be batched
72bfc32 Merge pull request #2352 from ESMCI/jgfouca/improve_create_test_err_msg
a61a911 Merge pull request #2359 from ESMCI/jgfouca/allow_custom_directive_prefix
5e97685 Merge pull request #2344 from ESMCI/bogensch/SCM_SESCM
ec55a15 Merge pull request #2357 from ESMCI/jgfouca/branch-for-acme-split-2018-03-13
3bdab2c Add better output to cime mgmt tool
336f6d4 Merge pull request #2356 from jedwards4b/hobart_regex_update
e078c25 Merge pull request #2355 from ESMCI/jgfouca/xmlquery_derived_attributes
156458f Merge pull request #2354 from jedwards4b/hobart_regex_update
8597596 Make sure to clean repo before doing cime updates
0fe7a9e Merge pull request #2347 from ESMCI/mfdeakin-sandia/st_archive/encapsulate_datetime
c0272bf Merge pull request #2350 from rgknox/rgknox-lawrencium-mach
28270b7 Merge pull request #2346 from ESMCI/rljacob/add-contributing
46f371a Merge pull request #2345 from ESMCI/mvertens/addition_to_docs
2b51643 Fix XML errors in config_archive for e3
df4f779 Implement improvements to st_archive regular expressions
Modified files: git diff --name-status [previous_tag]
M .gitignore
A CONTRIBUTING.md
M ChangeLog
M config/cesm/config_archive.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M config/config_headers.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
D config/e3sm/allactive/usermods_dirs/b1850/shell_commands
D config/e3sm/allactive/usermods_dirs/b1850_cism/include_user_mods
D config/e3sm/allactive/usermods_dirs/b1850_cism/user_nl_cism
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
A config/e3sm/machines/Depends.summit.pgiacc
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/syslog.anvil
M config/e3sm/machines/syslog.cetus
M config/e3sm/machines/syslog.cori-haswell
M config/e3sm/machines/syslog.cori-knl
M config/e3sm/machines/syslog.edison
M config/e3sm/machines/syslog.mira
M config/e3sm/machines/syslog.theta
M config/e3sm/machines/syslog.titan
M config/e3sm/machines/template.case.run
A config/e3sm/machines/template.case.run.sh
M config/e3sm/machines/template.case.test
M config/e3sm/machines/template.st_archive
A config/e3sm/testmods_dirs/allactive/clm/bgcexp/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/bgcexp/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/mach/pet/shell_commands
A config/e3sm/testmods_dirs/allactive/v1cmip6/README
A config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
A config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_clm
A config/e3sm/testmods_dirs/allactive/v1cmip6/xmlchange_cmnds
A config/e3sm/usermods_dirs/b1850/shell_commands
A config/e3sm/usermods_dirs/b1850_cism/include_user_mods
A config/e3sm/usermods_dirs/b1850_cism/user_nl_cism
M config/xml_schemas/config_batch.xsd
M doc/source/build_cpl/index.rst
M doc/source/conf.py
M doc/source/data_models/data-ocean.rst
M doc/source/data_models/index.rst
M doc/source/driver_cpl/index.rst
M doc/source/index.rst
A doc/source/misc_tools/ect.rst
M doc/source/misc_tools/index.rst
M doc/source/users_guide/adding-cases.rst
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/case-basics.rst
M doc/source/users_guide/cime-internals.rst
A doc/source/users_guide/creating-new-compsets.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/testing.rst
M doc/source/what_cime/index.rst
D doc/source/xml_files/acme.rst
M doc/source/xml_files/drivers.rst
A doc/source/xml_files/e3sm.rst
M doc/source/xml_files/index.rst
M doc/tools_autodoc.cfg
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/e3sm_cime_merge
M scripts/Tools/e3sm_cime_split
M scripts/Tools/mkSrcfiles
D scripts/Tools/pointclm/README
D scripts/Tools/pointclm/makepointdata.py
D scripts/Tools/pointclm/pointCLM.py
D scripts/Tools/pointclm/post_process.py
D scripts/Tools/pointclm/site_fullrun.py
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/irt.py
M scripts/lib/CIME/SystemTests/ldsta.py
M scripts/lib/CIME/SystemTests/mcc.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/pea.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/seq.py