diff --git a/.nojekyll b/.nojekyll index 2b3251d..36a98f5 100644 --- a/.nojekyll +++ b/.nojekyll @@ -1 +1 @@ -7e43c687 \ No newline at end of file +89e8acc1 \ No newline at end of file diff --git a/access/UCloud.html b/access/UCloud.html index 2831603..0515225 100644 --- a/access/UCloud.html +++ b/access/UCloud.html @@ -200,7 +200,7 @@

Step 2

For this example, we select Sandbox_workshop.

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Screenshot of your dashboard

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Screenshot of your dashboard

Dashboard: your workspace
@@ -233,7 +233,7 @@

Step 3

Then click on Apps in the left panel to investigate what tools and environments you can use (green circle). The easiest way to find Sandbox resources is to search via the toolbar (red circle). In this example, we’ll select the Genomics Sandbox (which will bring you to the submission screen).

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Screenshot of apps dashboard

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Screenshot of apps dashboard

Dashboard: all apps
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Step 4

Click on the app button to get into the settings window. First, we recommend reading the documentation of the app (highlighted in green). Then, you can configure the app as shown below, or be provided with a configuration file made available in a workshop’s project folders (import parameters) which will take care of everything for you.

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Screenshot of how to configure your job

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Screenshot of how to configure your job

Dashboard jobs: configuration step
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Step 5

Wait to go through the queue. When the session starts, the timer begins to count down. In a couple of minutes, you should be able to open the interface through the button (green circle) in a new window (refresh the window if needed).

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Screenshot of dashboard running app

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Screenshot of dashboard running app

Dashboard jobs: running the app
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Step 6

If you are testing the genomic app, your interface should look like in the image below. Different apps might use other development environments. In this case, you will be working from JupyterLab. You can open Jupyter Notebooks (yellow square), R studio (blue square) or a terminal (black square) among others. In this case, #1 and #2 have all the software and packages that you will need pre-installed (this is not the case with Python 3 to the left).

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Screenshot of JupyterLab interface

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Screenshot of JupyterLab interface

JupyterLab interface: running the app

You can navigate through the different folders and start running the Python notebooks (pink arrow).

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Screenshot of Jupyter Notebook

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Screenshot of Jupyter Notebook

JupyterLab interface: openning notebook
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Step 6

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