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Reshape LD to be readable by LZ standalone #2

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dariushghasemi opened this issue Nov 20, 2024 · 0 comments
Open

Reshape LD to be readable by LZ standalone #2

dariushghasemi opened this issue Nov 20, 2024 · 0 comments

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@dariushghasemi
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For a regional association plot, we are using a user-defined local LD in Interval study. LZ desires its own format described here for the LD file. Here we use bash commands to retain the favorable format for the plink-computed LD files.
dariushghasemi added a commit that referenced this issue Nov 20, 2024
@dariushghasemi
add rule to reshape LD using bash commands #2
d3f39ea
dariushghasemi added a commit that referenced this issue Nov 20, 2024
@dariushghasemi
add sentinel files to teh rules #2
9ad3d72
dariushghasemi added a commit that referenced this issue Nov 25, 2024
@dariushghasemi
Successfully run ld_reshape rule #2
249e9d1 
move output path to params and sentinels to output directive
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