diff --git a/app.js b/app.js
index e37859ff..843d5565 100644
--- a/app.js
+++ b/app.js
@@ -23,8 +23,8 @@ app.use('/node_modules/bootstrap-select', express.static(__dirname + '/node_modu
 
 var multerInstance = multer({dest:'./uploads/'});
 
-//var APP_PORT = 3000;
-var APP_PORT = 80;
+var APP_PORT = 3000;
+//var APP_PORT = 80;
 
 //get handler for index.html
 function indexGetHandler(req,res){
diff --git a/public/bin/base.min.css b/public/bin/base.min.css
index 16d12648..2b6d6373 100644
--- a/public/bin/base.min.css
+++ b/public/bin/base.min.css
@@ -1,7 +1,7 @@
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  * animate.css -http://daneden.me/animate
  * Version - 3.5.1
  * Licensed under the MIT license - http://opensource.org/licenses/MIT
  *
  * Copyright (c) 2016 Daniel Eden
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\ No newline at end of file
diff --git a/public/bin/base.min.js b/public/bin/base.min.js
index 5368a545..2f29863a 100644
--- a/public/bin/base.min.js
+++ b/public/bin/base.min.js
@@ -22,12 +22,12 @@ start.select()}else{if(start.selected()){start.unselect()}else{start.select()}}r
 
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cache};CRp.fillStyle=function(context,r,g,b,a){context.fillStyle="rgba("+r+","+g+","+b+","+a+")"};CRp.strokeStyle=function(context,r,g,b,a){context.strokeStyle="rgba("+r+","+g+","+b+","+a+")"};CRp.shadowStyle=function(context,color,opacity,blur,offsetX,offsetY){var zoom=this.cy.zoom();if(opacity>0){context.shadowBlur=blur*zoom;context.shadowColor="rgba("+color[0]+","+color[1]+","+color[2]+","+opacity+")";context.shadowOffsetX=offsetX*zoom;context.shadowOffsetY=offsetY*zoom}else{context.shadowBlur=0;context.shadowColor="transparent";context.shadowOffsetX=0;context.shadowOffsetY=0}};CRp.matchCanvasSize=function(container){var r=this;var data=r.data;var width=container.clientWidth;var height=container.clientHeight;var pixelRatio=r.getPixelRatio();var mbPxRatio=r.motionBlurPxRatio;if(container===r.data.bufferCanvases[r.MOTIONBLUR_BUFFER_NODE]||container===r.data.bufferCanvases[r.MOTIONBLUR_BUFFER_DRAG]){pixelRatio=mbPxRatio}var canvasWidth=width*pixelRatio;var canvasHeight=height*pixelRatio;var canvas;if(canvasWidth===r.canvasWidth&&canvasHeight===r.canvasHeight){return}r.fontCaches=null;var canvasContainer=data.canvasContainer;canvasContainer.style.width=width+"px";canvasContainer.style.height=height+"px";for(var i=0;i<r.CANVAS_LAYERS;i++){canvas=data.canvases[i];if(canvas.width!==canvasWidth||canvas.height!==canvasHeight){canvas.width=canvasWidth;canvas.height=canvasHeight;canvas.style.width=width+"px";canvas.style.height=height+"px"}}for(var i=0;i<r.BUFFER_COUNT;i++){canvas=data.bufferCanvases[i];if(canvas.width!==canvasWidth||canvas.height!==canvasHeight){canvas.width=canvasWidth;canvas.height=canvasHeight;canvas.style.width=width+"px";canvas.style.height=height+"px"}}r.textureMult=1;if(pixelRatio<=1){canvas=data.bufferCanvases[r.TEXTURE_BUFFER];r.textureMult=2;canvas.width=canvasWidth*r.textureMult;canvas.height=canvasHeight*r.textureMult}r.canvasWidth=canvasWidth;r.canvasHeight=canvasHeight};CRp.renderTo=function(cxt,zoom,pan,pxRatio){this.render({forcedContext:cxt,forcedZoom:zoom,forcedPan:pan,drawAllLayers:true,forcedPxRatio:pxRatio})};CRp.render=function(options){options=options||util.staticEmptyObject();var forcedContext=options.forcedContext;var drawAllLayers=options.drawAllLayers;var drawOnlyNodeLayer=options.drawOnlyNodeLayer;var forcedZoom=options.forcedZoom;var forcedPan=options.forcedPan;var r=this;var pixelRatio=options.forcedPxRatio===undefined?this.getPixelRatio():options.forcedPxRatio;var cy=r.cy;var data=r.data;var needDraw=data.canvasNeedsRedraw;var textureDraw=r.textureOnViewport&&!forcedContext&&(r.pinching||r.hoverData.dragging||r.swipePanning||r.data.wheelZooming);var motionBlur=options.motionBlur!==undefined?options.motionBlur:r.motionBlur;var mbPxRatio=r.motionBlurPxRatio;var hasCompoundNodes=cy.hasCompoundNodes();var inNodeDragGesture=r.hoverData.draggingEles;var inBoxSelection=r.hoverData.selecting||r.touchData.selecting?true:false;motionBlur=motionBlur&&!forcedContext&&r.motionBlurEnabled&&!inBoxSelection;var motionBlurFadeEffect=motionBlur;if(!forcedContext){if(r.prevPxRatio!==pixelRatio){r.invalidateContainerClientCoordsCache();r.matchCanvasSize(r.container);r.redrawHint("eles",true);r.redrawHint("drag",true)}r.prevPxRatio=pixelRatio}if(!forcedContext&&r.motionBlurTimeout){clearTimeout(r.motionBlurTimeout)}if(motionBlur){if(r.mbFrames==null){r.mbFrames=0}if(!r.drawingImage){r.mbFrames++}if(r.mbFrames<3){motionBlurFadeEffect=false}if(r.mbFrames>r.minMbLowQualFrames){r.motionBlurPxRatio=r.mbPxRBlurry}}if(r.clearingMotionBlur){r.motionBlurPxRatio=1}if(r.textureDrawLastFrame&&!textureDraw){needDraw[r.NODE]=true;needDraw[r.SELECT_BOX]=true}var coreStyle=cy.style()._private.coreStyle;var zoom=cy.zoom();var effectiveZoom=forcedZoom!==undefined?forcedZoom:zoom;var pan=cy.pan();var effectivePan={x:pan.x,y:pan.y};var vp={zoom:zoom,pan:{x:pan.x,y:pan.y}};var prevVp=r.prevViewport;var viewportIsDiff=prevVp===undefined||vp.zoom!==prevVp.zoom||vp.pan.x!==prevVp.pan.x||vp.pan.y!==prevVp.pan.y;if(!viewportIsDiff&&!(inNodeDragGesture&&!hasCompoundNodes)){r.motionBlurPxRatio=1}if(forcedPan){effectivePan=forcedPan}effectiveZoom*=pixelRatio;effectivePan.x*=pixelRatio;effectivePan.y*=pixelRatio;var eles=r.getCachedZSortedEles();function mbclear(context,x,y,w,h){var gco=context.globalCompositeOperation;context.globalCompositeOperation="destination-out";r.fillStyle(context,255,255,255,r.motionBlurTransparency);context.fillRect(x,y,w,h);context.globalCompositeOperation=gco}function setContextTransform(context,clear){var ePan,eZoom,w,h;if(!r.clearingMotionBlur&&(context===data.bufferContexts[r.MOTIONBLUR_BUFFER_NODE]||context===data.bufferContexts[r.MOTIONBLUR_BUFFER_DRAG])){ePan={x:pan.x*mbPxRatio,y:pan.y*mbPxRatio};eZoom=zoom*mbPxRatio;w=r.canvasWidth*mbPxRatio;h=r.canvasHeight*mbPxRatio}else{ePan=effectivePan;eZoom=effectiveZoom;w=r.canvasWidth;h=r.canvasHeight}context.setTransform(1,0,0,1,0,0);if(clear==="motionBlur"){mbclear(context,0,0,w,h)}else if(!forcedContext&&(clear===undefined||clear)){context.clearRect(0,0,w,h)}if(!drawAllLayers){context.translate(ePan.x,ePan.y);context.scale(eZoom,eZoom)}if(forcedPan){context.translate(forcedPan.x,forcedPan.y)}if(forcedZoom){context.scale(forcedZoom,forcedZoom)}}if(!textureDraw){r.textureDrawLastFrame=false}if(textureDraw){r.textureDrawLastFrame=true;var bb;if(!r.textureCache){r.textureCache={};bb=r.textureCache.bb=cy.mutableElements().boundingBox();r.textureCache.texture=r.data.bufferCanvases[r.TEXTURE_BUFFER];var cxt=r.data.bufferContexts[r.TEXTURE_BUFFER];cxt.setTransform(1,0,0,1,0,0);cxt.clearRect(0,0,r.canvasWidth*r.textureMult,r.canvasHeight*r.textureMult);r.render({forcedContext:cxt,drawOnlyNodeLayer:true,forcedPxRatio:pixelRatio*r.textureMult});var vp=r.textureCache.viewport={zoom:cy.zoom(),pan:cy.pan(),width:r.canvasWidth,height:r.canvasHeight};vp.mpan={x:(0-vp.pan.x)/vp.zoom,y:(0-vp.pan.y)/vp.zoom}}needDraw[r.DRAG]=false;needDraw[r.NODE]=false;var context=data.contexts[r.NODE];var texture=r.textureCache.texture;var vp=r.textureCache.viewport;bb=r.textureCache.bb;context.setTransform(1,0,0,1,0,0);if(motionBlur){mbclear(context,0,0,vp.width,vp.height)}else{context.clearRect(0,0,vp.width,vp.height)}var outsideBgColor=coreStyle["outside-texture-bg-color"].value;var outsideBgOpacity=coreStyle["outside-texture-bg-opacity"].value;r.fillStyle(context,outsideBgColor[0],outsideBgColor[1],outsideBgColor[2],outsideBgOpacity);context.fillRect(0,0,vp.width,vp.height);var zoom=cy.zoom();setContextTransform(context,false);context.clearRect(vp.mpan.x,vp.mpan.y,vp.width/vp.zoom/pixelRatio,vp.height/vp.zoom/pixelRatio);context.drawImage(texture,vp.mpan.x,vp.mpan.y,vp.width/vp.zoom/pixelRatio,vp.height/vp.zoom/pixelRatio)}else if(r.textureOnViewport&&!forcedContext){r.textureCache=null}var extent=cy.extent();var vpManip=r.pinching||r.hoverData.dragging||r.swipePanning||r.data.wheelZooming||r.hoverData.draggingEles;var hideEdges=r.hideEdgesOnViewport&&vpManip;var needMbClear=[];needMbClear[r.NODE]=!needDraw[r.NODE]&&motionBlur&&!r.clearedForMotionBlur[r.NODE]||r.clearingMotionBlur;if(needMbClear[r.NODE]){r.clearedForMotionBlur[r.NODE]=true}needMbClear[r.DRAG]=!needDraw[r.DRAG]&&motionBlur&&!r.clearedForMotionBlur[r.DRAG]||r.clearingMotionBlur;if(needMbClear[r.DRAG]){r.clearedForMotionBlur[r.DRAG]=true}if(needDraw[r.NODE]||drawAllLayers||drawOnlyNodeLayer||needMbClear[r.NODE]){var useBuffer=motionBlur&&!needMbClear[r.NODE]&&mbPxRatio!==1;var context=forcedContext||(useBuffer?r.data.bufferContexts[r.MOTIONBLUR_BUFFER_NODE]:data.contexts[r.NODE]);var clear=motionBlur&&!useBuffer?"motionBlur":undefined;setContextTransform(context,clear);if(hideEdges){r.drawCachedNodes(context,eles.nondrag,pixelRatio,extent)}else{r.drawLayeredElements(context,eles.nondrag,pixelRatio,extent)}if(!drawAllLayers&&!motionBlur){needDraw[r.NODE]=false}}if(!drawOnlyNodeLayer&&(needDraw[r.DRAG]||drawAllLayers||needMbClear[r.DRAG])){var useBuffer=motionBlur&&!needMbClear[r.DRAG]&&mbPxRatio!==1;var context=forcedContext||(useBuffer?r.data.bufferContexts[r.MOTIONBLUR_BUFFER_DRAG]:data.contexts[r.DRAG]);setContextTransform(context,motionBlur&&!useBuffer?"motionBlur":undefined);if(hideEdges){r.drawCachedNodes(context,eles.drag,pixelRatio,extent)}else{r.drawCachedElements(context,eles.drag,pixelRatio,extent)}if(!drawAllLayers&&!motionBlur){needDraw[r.DRAG]=false}}if(r.showFps||!drawOnlyNodeLayer&&(needDraw[r.SELECT_BOX]&&!drawAllLayers)){var context=forcedContext||data.contexts[r.SELECT_BOX];setContextTransform(context);if(r.selection[4]==1&&(r.hoverData.selecting||r.touchData.selecting)){var zoom=r.cy.zoom();var borderWidth=coreStyle["selection-box-border-width"].value/zoom;context.lineWidth=borderWidth;context.fillStyle="rgba("+coreStyle["selection-box-color"].value[0]+","+coreStyle["selection-box-color"].value[1]+","+coreStyle["selection-box-color"].value[2]+","+coreStyle["selection-box-opacity"].value+")";context.fillRect(r.selection[0],r.selection[1],r.selection[2]-r.selection[0],r.selection[3]-r.selection[1]);if(borderWidth>0){context.strokeStyle="rgba("+coreStyle["selection-box-border-color"].value[0]+","+coreStyle["selection-box-border-color"].value[1]+","+coreStyle["selection-box-border-color"].value[2]+","+coreStyle["selection-box-opacity"].value+")";context.strokeRect(r.selection[0],r.selection[1],r.selection[2]-r.selection[0],r.selection[3]-r.selection[1])}}if(data.bgActivePosistion&&!r.hoverData.selecting){var zoom=r.cy.zoom();var pos=data.bgActivePosistion;context.fillStyle="rgba("+coreStyle["active-bg-color"].value[0]+","+coreStyle["active-bg-color"].value[1]+","+coreStyle["active-bg-color"].value[2]+","+coreStyle["active-bg-opacity"].value+")";context.beginPath();context.arc(pos.x,pos.y,coreStyle["active-bg-size"].pfValue/zoom,0,2*Math.PI);context.fill()}var timeToRender=r.lastRedrawTime;if(r.showFps&&timeToRender){timeToRender=Math.round(timeToRender);var fps=Math.round(1e3/timeToRender);context.setTransform(1,0,0,1,0,0);context.fillStyle="rgba(255, 0, 0, 0.75)";context.strokeStyle="rgba(255, 0, 0, 0.75)";context.lineWidth=1;context.fillText("1 frame = "+timeToRender+" ms = "+fps+" fps",0,20);var maxFps=60;context.strokeRect(0,30,250,20);context.fillRect(0,30,250*Math.min(fps/maxFps,1),20)}if(!drawAllLayers){needDraw[r.SELECT_BOX]=false}}if(motionBlur&&mbPxRatio!==1){var cxtNode=data.contexts[r.NODE];var txtNode=r.data.bufferCanvases[r.MOTIONBLUR_BUFFER_NODE];var cxtDrag=data.contexts[r.DRAG];var txtDrag=r.data.bufferCanvases[r.MOTIONBLUR_BUFFER_DRAG];var drawMotionBlur=function(cxt,txt,needClear){cxt.setTransform(1,0,0,1,0,0);if(needClear||!motionBlurFadeEffect){cxt.clearRect(0,0,r.canvasWidth,r.canvasHeight)}else{mbclear(cxt,0,0,r.canvasWidth,r.canvasHeight)}var pxr=mbPxRatio;cxt.drawImage(txt,0,0,r.canvasWidth*pxr,r.canvasHeight*pxr,0,0,r.canvasWidth,r.canvasHeight)};if(needDraw[r.NODE]||needMbClear[r.NODE]){drawMotionBlur(cxtNode,txtNode,needMbClear[r.NODE]);needDraw[r.NODE]=false}if(needDraw[r.DRAG]||needMbClear[r.DRAG]){drawMotionBlur(cxtDrag,txtDrag,needMbClear[r.DRAG]);needDraw[r.DRAG]=false}}r.prevViewport=vp;if(r.clearingMotionBlur){r.clearingMotionBlur=false;r.motionBlurCleared=true;r.motionBlur=true}if(motionBlur){r.motionBlurTimeout=setTimeout(function(){r.motionBlurTimeout=null;r.clearedForMotionBlur[r.NODE]=false;r.clearedForMotionBlur[r.DRAG]=false;r.motionBlur=false;r.clearingMotionBlur=!textureDraw;r.mbFrames=0;needDraw[r.NODE]=true;needDraw[r.DRAG]=true;r.redraw()},motionBlurDelay)}r.drawingImage=false;if(!forcedContext&&!r.initrender){r.initrender=true;cy.trigger("initrender")}if(!forcedContext){cy.trigger("render")}};module.exports=CRp},{"../../../util":131}],102:[function(require,module,exports){"use strict";var math=require("../../../math");var CRp={};CRp.drawPolygonPath=function(context,x,y,width,height,points){var halfW=width/2;var halfH=height/2;if(context.beginPath){context.beginPath()}context.moveTo(x+halfW*points[0],y+halfH*points[1]);for(var i=1;i<points.length/2;i++){context.lineTo(x+halfW*points[i*2],y+halfH*points[i*2+1])}context.closePath()};CRp.drawRoundRectanglePath=function(context,x,y,width,height){var halfWidth=width/2;var halfHeight=height/2;var cornerRadius=math.getRoundRectangleRadius(width,height);if(context.beginPath){context.beginPath()}context.moveTo(x,y-halfHeight);context.arcTo(x+halfWidth,y-halfHeight,x+halfWidth,y,cornerRadius);context.arcTo(x+halfWidth,y+halfHeight,x,y+halfHeight,cornerRadius);context.arcTo(x-halfWidth,y+halfHeight,x-halfWidth,y,cornerRadius);context.arcTo(x-halfWidth,y-halfHeight,x,y-halfHeight,cornerRadius);context.lineTo(x,y-halfHeight);context.closePath()};var sin0=Math.sin(0);var cos0=Math.cos(0);var sin={};var cos={};var ellipseStepSize=Math.PI/40;for(var i=0*Math.PI;i<2*Math.PI;i+=ellipseStepSize){sin[i]=Math.sin(i);cos[i]=Math.cos(i)}CRp.drawEllipsePath=function(context,centerX,centerY,width,height){if(context.beginPath){context.beginPath()}if(context.ellipse){context.ellipse(centerX,centerY,width/2,height/2,0,0,2*Math.PI)}else{var xPos,yPos;var rw=width/2;var rh=height/2;for(var i=0*Math.PI;i<2*Math.PI;i+=ellipseStepSize){xPos=centerX-rw*sin[i]*sin0+rw*cos[i]*cos0;yPos=centerY+rh*cos[i]*sin0+rh*sin[i]*cos0;if(i===0){context.moveTo(xPos,yPos)}else{context.lineTo(xPos,yPos)}}}context.closePath()};module.exports=CRp},{"../../../math":116}],103:[function(require,module,exports){"use strict";var math=require("../../../math");var util=require("../../../util");var Heap=require("../../../heap");var defs=require("./texture-cache-defs");var minTxrH=25;var txrStepH=50;var minLvl=-4;var maxLvl=2;var maxZoom=3.99;var eleTxrSpacing=8;var defTxrWidth=1024;var maxTxrW=1024;var maxTxrH=1024;var minUtility=.5;var maxFullness=.8;var maxFullnessChecks=10;var allowEdgeTxrCaching=false;var allowParentTxrCaching=false;var deqCost=.15;var deqAvgCost=.1;var deqNoDrawCost=.9;var deqFastCost=.9;var deqRedrawThreshold=100;var maxDeqSize=1;var getTxrReasons={dequeue:"dequeue",downscale:"downscale",highQuality:"highQuality"};var ElementTextureCache=function(renderer){var self=this;self.renderer=renderer;self.onDequeues=[];self.setupDequeueing()};var ETCp=ElementTextureCache.prototype;ETCp.reasons=getTxrReasons;ETCp.getTextureQueue=function(txrH){var self=this;self.eleImgCaches=self.eleImgCaches||{};return self.eleImgCaches[txrH]=self.eleImgCaches[txrH]||[]};ETCp.getRetiredTextureQueue=function(txrH){var self=this;var rtxtrQs=self.eleImgCaches.retired=self.eleImgCaches.retired||{};var rtxtrQ=rtxtrQs[txrH]=rtxtrQs[txrH]||[];return rtxtrQ};ETCp.getElementQueue=function(){var self=this;var q=self.eleCacheQueue=self.eleCacheQueue||new Heap(function(a,b){return b.reqs-a.reqs});return q};ETCp.getElementIdToQueue=function(){var self=this;var id2q=self.eleIdToCacheQueue=self.eleIdToCacheQueue||{};return id2q};ETCp.getElement=function(ele,bb,pxRatio,lvl,reason){var self=this;var r=this.renderer;var rs=ele._private.rscratch;var zoom=r.cy.zoom();if(bb.w===0||bb.h===0){return null}if(lvl==null){lvl=Math.ceil(math.log2(zoom*pxRatio))}if(lvl<minLvl){lvl=minLvl}else if(zoom>=maxZoom||lvl>maxLvl){return null}var scale=Math.pow(2,lvl);var eleScaledH=bb.h*scale;var eleScaledW=bb.w*scale;var caches=rs.imgCaches=rs.imgCaches||{};var eleCache=caches[lvl];if(eleCache){return eleCache}var txrH;if(eleScaledH<=minTxrH){txrH=minTxrH}else if(eleScaledH<=txrStepH){txrH=txrStepH}else{txrH=Math.ceil(eleScaledH/txrStepH)*txrStepH}if(eleScaledH>maxTxrH||eleScaledW>maxTxrW||!allowEdgeTxrCaching&&ele.isEdge()||!allowParentTxrCaching&&ele.isParent()){return null}var txrQ=self.getTextureQueue(txrH);var txr=txrQ[txrQ.length-2];var addNewTxr=function(){return self.recycleTexture(txrH,eleScaledW)||self.addTexture(txrH,eleScaledW)};if(!txr){txr=txrQ[txrQ.length-1]}if(!txr){txr=addNewTxr()}if(txr.width-txr.usedWidth<eleScaledW){txr=addNewTxr()}var scaledLabelShown=r.eleTextBiggerThanMin(ele,scale);var scalableFrom=function(otherCache){return otherCache&&otherCache.scaledLabelShown===scaledLabelShown};var deqing=reason&&reason===getTxrReasons.dequeue;var highQualityReq=reason&&reason===getTxrReasons.highQuality;var downscaleReq=reason&&reason===getTxrReasons.downscale;var higherCache;for(var l=lvl+1;l<=maxLvl;l++){var c=caches[l];if(c){higherCache=c;break}}var oneUpCache=higherCache&&higherCache.level===lvl+1?higherCache:null;var downscale=function(){txr.context.drawImage(oneUpCache.texture.canvas,oneUpCache.x,0,oneUpCache.width,oneUpCache.height,txr.usedWidth,0,eleScaledW,eleScaledH)};if(scalableFrom(oneUpCache)){downscale()}else if(scalableFrom(higherCache)){if(highQualityReq){for(var l=higherCache.level;l>lvl;l--){oneUpCache=self.getElement(ele,bb,pxRatio,l,getTxrReasons.downscale)}downscale()}else{self.queueElement(ele,bb,higherCache.level-1);return higherCache}}else{var lowerCache;if(!deqing&&!highQualityReq&&!downscaleReq){for(var l=lvl-1;l>=minLvl;l--){var c=caches[l];if(c){lowerCache=c;break}}}if(scalableFrom(lowerCache)){self.queueElement(ele,bb,lvl);return lowerCache}txr.context.translate(txr.usedWidth,0);txr.context.scale(scale,scale);r.drawElement(txr.context,ele,bb,scaledLabelShown);txr.context.scale(1/scale,1/scale);txr.context.translate(-txr.usedWidth,0)}eleCache=caches[lvl]={ele:ele,x:txr.usedWidth,texture:txr,level:lvl,scale:scale,width:eleScaledW,height:eleScaledH,scaledLabelShown:scaledLabelShown};txr.usedWidth+=Math.ceil(eleScaledW+eleTxrSpacing);txr.eleCaches.push(eleCache);self.checkTextureFullness(txr);return eleCache};ETCp.invalidateElement=function(ele){var self=this;var caches=ele._private.rscratch.imgCaches;if(caches){for(var lvl=minLvl;lvl<=maxLvl;lvl++){var cache=caches[lvl];if(cache){var txr=cache.texture;txr.invalidatedWidth+=cache.width;caches[lvl]=null;util.removeFromArray(txr.eleCaches,cache);self.checkTextureUtility(txr)}}}};ETCp.checkTextureUtility=function(txr){if(txr.invalidatedWidth>=minUtility*txr.width){this.retireTexture(txr)}};ETCp.checkTextureFullness=function(txr){var self=this;var txrQ=self.getTextureQueue(txr.height);if(txr.usedWidth/txr.width>maxFullness&&txr.fullnessChecks>=maxFullnessChecks){util.removeFromArray(txrQ,txr)}else{txr.fullnessChecks++}};ETCp.retireTexture=function(txr){var self=this;var txrH=txr.height;var txrQ=self.getTextureQueue(txrH);util.removeFromArray(txrQ,txr);txr.retired=true;var eleCaches=txr.eleCaches;for(var i=0;i<eleCaches.length;i++){var eleCache=eleCaches[i];var ele=eleCache.ele;var lvl=eleCache.level;var imgCaches=ele._private.rscratch.imgCaches;if(imgCaches){imgCaches[lvl]=null}}util.clearArray(eleCaches);var rtxtrQ=self.getRetiredTextureQueue(txrH);rtxtrQ.push(txr)};ETCp.addTexture=function(txrH,minW){var self=this;var txrQ=self.getTextureQueue(txrH);var txr={};txrQ.push(txr);txr.eleCaches=[];txr.height=txrH;txr.width=Math.max(defTxrWidth,minW);txr.usedWidth=0;txr.invalidatedWidth=0;txr.fullnessChecks=0;txr.canvas=document.createElement("canvas");txr.canvas.width=txr.width;txr.canvas.height=txr.height;txr.context=txr.canvas.getContext("2d");return txr};ETCp.recycleTexture=function(txrH,minW){var self=this;var txrQ=self.getTextureQueue(txrH);var rtxtrQ=self.getRetiredTextureQueue(txrH);for(var i=0;i<rtxtrQ.length;i++){var txr=rtxtrQ[i];if(txr.width>=minW){txr.retired=false;txr.usedWidth=0;txr.invalidatedWidth=0;txr.fullnessChecks=0;util.clearArray(txr.eleCaches);txr.context.clearRect(0,0,txr.width,txr.height);util.removeFromArray(rtxtrQ,txr);txrQ.push(txr);return txr}}};ETCp.queueElement=function(ele,bb,lvl){var self=this;var q=self.getElementQueue();var id2q=self.getElementIdToQueue();var id=ele.id();var existingReq=id2q[id];if(existingReq){existingReq.level=Math.max(existingReq.level,lvl);existingReq.reqs++;q.updateItem(existingReq)}else{var req={ele:ele,bb:bb,position:math.copyPosition(ele.position()),level:lvl,reqs:1};if(ele.isEdge()){req.positions={source:math.copyPosition(ele.source().position()),target:math.copyPosition(ele.target().position())}}q.push(req);id2q[id]=req}};ETCp.dequeue=function(pxRatio,extent){var self=this;var q=self.getElementQueue();var id2q=self.getElementIdToQueue();var dequeued=[];for(var i=0;i<maxDeqSize;i++){if(q.size()>0){var req=q.pop();id2q[req.ele.id()]=null;dequeued.push(req);var ele=req.ele;var bb;if(ele.isEdge()&&(!math.arePositionsSame(ele.source().position(),req.positions.source)||!math.arePositionsSame(ele.target().position(),req.positions.target))||!math.arePositionsSame(ele.position(),req.position)){bb=ele.boundingBox()}else{bb=req.bb}self.getElement(req.ele,bb,pxRatio,req.level,getTxrReasons.dequeue)}else{break}}return dequeued};ETCp.onDequeue=function(fn){this.onDequeues.push(fn)};ETCp.offDequeue=function(fn){util.removeFromArray(this.onDequeues,fn)};ETCp.setupDequeueing=defs.setupDequeueing({deqRedrawThreshold:deqRedrawThreshold,deqCost:deqCost,deqAvgCost:deqAvgCost,deqNoDrawCost:deqNoDrawCost,deqFastCost:deqFastCost,deq:function(self,pxRatio,extent){return self.dequeue(pxRatio,extent)},onDeqd:function(self,deqd){for(var i=0;i<self.onDequeues.length;i++){var fn=self.onDequeues[i];fn(deqd)}},shouldRedraw:function(self,deqd,pxRatio,extent){for(var i=0;i<deqd.length;i++){var bb=deqd[i].bb;if(math.boundingBoxesIntersect(bb,extent)){return true}}return false},priority:function(self){return self.renderer.beforeRenderPriorities.eleTxrDeq}});module.exports=ElementTextureCache},{"../../../heap":112,"../../../math":116,"../../../util":131,"./texture-cache-defs":108}],104:[function(require,module,exports){"use strict";var is=require("../../../is");var CRp={};CRp.createBuffer=function(w,h){var buffer=document.createElement("canvas");buffer.width=w;buffer.height=h;return[buffer,buffer.getContext("2d")]};CRp.bufferCanvasImage=function(options){var cy=this.cy;var eles=cy.mutableElements();var bb=eles.boundingBox();var width=options.full?Math.ceil(bb.w):this.container.clientWidth;var height=options.full?Math.ceil(bb.h):this.container.clientHeight;var specdMaxDims=is.number(options.maxWidth)||is.number(options.maxHeight);var pxRatio=this.getPixelRatio();var scale=1;if(options.scale!==undefined){width*=options.scale;height*=options.scale;scale=options.scale}else if(specdMaxDims){var maxScaleW=Infinity;var maxScaleH=Infinity;if(is.number(options.maxWidth)){maxScaleW=scale*options.maxWidth/width}if(is.number(options.maxHeight)){maxScaleH=scale*options.maxHeight/height}scale=Math.min(maxScaleW,maxScaleH);width*=scale;height*=scale}if(!specdMaxDims){width*=pxRatio;height*=pxRatio;scale*=pxRatio}var buffCanvas=document.createElement("canvas");buffCanvas.width=width;buffCanvas.height=height;buffCanvas.style.width=width+"px";buffCanvas.style.height=height+"px";var buffCxt=buffCanvas.getContext("2d");if(width>0&&height>0){buffCxt.clearRect(0,0,width,height);if(options.bg){buffCxt.fillStyle=options.bg;buffCxt.rect(0,0,width,height);buffCxt.fill()}buffCxt.globalCompositeOperation="source-over";var zsortedEles=this.getCachedZSortedEles();if(options.full){buffCxt.translate(-bb.x1*scale,-bb.y1*scale);buffCxt.scale(scale,scale);this.drawElements(buffCxt,zsortedEles)}else{var pan=cy.pan();var translation={x:pan.x*scale,y:pan.y*scale};scale*=cy.zoom();buffCxt.translate(translation.x,translation.y);buffCxt.scale(scale,scale);this.drawElements(buffCxt,zsortedEles)}}return buffCanvas};CRp.png=function(options){return this.bufferCanvasImage(options).toDataURL("image/png")};CRp.jpg=function(options){return this.bufferCanvasImage(options).toDataURL("image/jpeg")};module.exports=CRp},{"../../../is":114}],105:[function(require,module,exports){"use strict";var util=require("../../../util");var is=require("../../../is");var ElementTextureCache=require("./ele-texture-cache");var LayeredTextureCache=require("./layered-texture-cache");var CR=CanvasRenderer;var CRp=CanvasRenderer.prototype;CRp.CANVAS_LAYERS=3;CRp.SELECT_BOX=0;CRp.DRAG=1;CRp.NODE=2;CRp.BUFFER_COUNT=3;CRp.TEXTURE_BUFFER=0;CRp.MOTIONBLUR_BUFFER_NODE=1;CRp.MOTIONBLUR_BUFFER_DRAG=2;function CanvasRenderer(options){var r=this;r.data={canvases:new Array(CRp.CANVAS_LAYERS),contexts:new Array(CRp.CANVAS_LAYERS),canvasNeedsRedraw:new Array(CRp.CANVAS_LAYERS),bufferCanvases:new Array(CRp.BUFFER_COUNT),bufferContexts:new Array(CRp.CANVAS_LAYERS)};r.data.canvasContainer=document.createElement("div");var containerStyle=r.data.canvasContainer.style;r.data.canvasContainer.setAttribute("style","-webkit-tap-highlight-color: rgba(0,0,0,0);");containerStyle.position="relative";containerStyle.zIndex="0";containerStyle.overflow="hidden";var container=options.cy.container();container.appendChild(r.data.canvasContainer);container.setAttribute("style",(container.getAttribute("style")||"")+"-webkit-tap-highlight-color: rgba(0,0,0,0);");for(var i=0;i<CRp.CANVAS_LAYERS;i++){var canvas=r.data.canvases[i]=document.createElement("canvas");r.data.contexts[i]=canvas.getContext("2d");canvas.setAttribute("style","-webkit-user-select: none; -moz-user-select: -moz-none; user-select: none; -webkit-tap-highlight-color: rgba(0,0,0,0); outline-style: none;"+(is.ms()?" -ms-touch-action: none; touch-action: none; ":""));canvas.style.position="absolute";canvas.setAttribute("data-id","layer"+i);canvas.style.zIndex=String(CRp.CANVAS_LAYERS-i);r.data.canvasContainer.appendChild(canvas);r.data.canvasNeedsRedraw[i]=false}r.data.topCanvas=r.data.canvases[0];r.data.canvases[CRp.NODE].setAttribute("data-id","layer"+CRp.NODE+"-node");r.data.canvases[CRp.SELECT_BOX].setAttribute("data-id","layer"+CRp.SELECT_BOX+"-selectbox");r.data.canvases[CRp.DRAG].setAttribute("data-id","layer"+CRp.DRAG+"-drag");for(var i=0;i<CRp.BUFFER_COUNT;i++){r.data.bufferCanvases[i]=document.createElement("canvas");r.data.bufferContexts[i]=r.data.bufferCanvases[i].getContext("2d");r.data.bufferCanvases[i].style.position="absolute";r.data.bufferCanvases[i].setAttribute("data-id","buffer"+i);r.data.bufferCanvases[i].style.zIndex=String(-i-1);r.data.bufferCanvases[i].style.visibility="hidden"}r.pathsEnabled=true;r.data.eleTxrCache=new ElementTextureCache(r);r.data.lyrTxrCache=new LayeredTextureCache(r,r.data.eleTxrCache);r.onUpdateEleCalcs(function invalidateTextureCaches(willDraw,eles){for(var i=0;i<eles.length;i++){var ele=eles[i];var rs=ele._private.rstyle;var de=rs.dirtyEvents;if(ele.isNode()&&de&&de.length===1&&de["position"]){}else{r.data.eleTxrCache.invalidateElement(ele)}}if(eles.length>0){r.data.lyrTxrCache.invalidateElements(eles)}})}CRp.redrawHint=function(group,bool){var r=this;switch(group){case"eles":r.data.canvasNeedsRedraw[CRp.NODE]=bool;break;case"drag":r.data.canvasNeedsRedraw[CRp.DRAG]=bool;break;case"select":r.data.canvasNeedsRedraw[CRp.SELECT_BOX]=bool;break}};var pathsImpld=typeof Path2D!=="undefined";CRp.path2dEnabled=function(on){if(on===undefined){return this.pathsEnabled}this.pathsEnabled=on?true:false};CRp.usePaths=function(){return pathsImpld&&this.pathsEnabled};[require("./arrow-shapes"),require("./drawing-elements"),require("./drawing-edges"),require("./drawing-images"),require("./drawing-label-text"),require("./drawing-nodes"),require("./drawing-redraw"),require("./drawing-shapes"),require("./export-image"),require("./node-shapes")].forEach(function(props){util.extend(CRp,props)});module.exports=CR},{"../../../is":114,"../../../util":131,"./arrow-shapes":95,"./drawing-edges":96,"./drawing-elements":97,"./drawing-images":98,"./drawing-label-text":99,"./drawing-nodes":100,"./drawing-redraw":101,"./drawing-shapes":102,"./ele-texture-cache":103,"./export-image":104,"./layered-texture-cache":106,"./node-shapes":107}],106:[function(require,module,exports){"use strict";var util=require("../../../util");var math=require("../../../math");var Heap=require("../../../heap");var is=require("../../../is");var defs=require("./texture-cache-defs");var defNumLayers=1;var minLvl=-4;var maxLvl=2;var maxZoom=3.99;var deqRedrawThreshold=50;var refineEleDebounceTime=50;var disableEleImgSmoothing=true;var deqCost=.15;var deqAvgCost=.1;var deqNoDrawCost=.9;var deqFastCost=.9;var maxDeqSize=1;var invalidThreshold=250;var maxLayerArea=4e3*4e3;var alwaysQueue=true;var useHighQualityEleTxrReqs=true;var useEleTxrCaching=true;var LayeredTextureCache=function(renderer,eleTxrCache){var self=this;var r=self.renderer=renderer;self.layersByLevel={};self.firstGet=true;self.lastInvalidationTime=util.performanceNow()-2*invalidThreshold;self.skipping=false;r.beforeRender(function(willDraw,now){if(now-self.lastInvalidationTime<=invalidThreshold){self.skipping=true}else{self.skipping=false}});var qSort=function(a,b){return b.reqs-a.reqs};self.layersQueue=new Heap(qSort);self.eleTxrCache=eleTxrCache;self.setupEleCacheInvalidation();self.setupDequeueing()};var LTCp=LayeredTextureCache.prototype;var layerIdPool=0;var MAX_INT=Math.pow(2,53)-1;LTCp.makeLayer=function(bb,lvl){var scale=Math.pow(2,lvl);var w=Math.ceil(bb.w*scale);var h=Math.ceil(bb.h*scale);var canvas=document.createElement("canvas");canvas.width=w;canvas.height=h;var layer={id:layerIdPool=++layerIdPool%MAX_INT,bb:bb,level:lvl,width:w,height:h,canvas:canvas,context:canvas.getContext("2d"),eles:[],elesQueue:[],reqs:0};var cxt=layer.context;var dx=-layer.bb.x1;var dy=-layer.bb.y1;cxt.scale(scale,scale);cxt.translate(dx,dy);return layer};LTCp.getLayers=function(eles,pxRatio,lvl){var self=this;var r=self.renderer;var cy=r.cy;var zoom=cy.zoom();var firstGet=self.firstGet;self.firstGet=false;if(lvl==null){lvl=Math.ceil(math.log2(zoom*pxRatio));if(lvl<minLvl){lvl=minLvl}else if(zoom>=maxZoom||lvl>maxLvl){return null}}self.validateLayersElesOrdering(lvl,eles);var layersByLvl=self.layersByLevel;var scale=Math.pow(2,lvl);var layers=layersByLvl[lvl]=layersByLvl[lvl]||[];var bb;var lvlComplete=self.levelIsComplete(lvl,eles);var tmpLayers;var checkTempLevels=function(){var canUseAsTmpLvl=function(l){self.validateLayersElesOrdering(l,eles);if(self.levelIsComplete(l,eles)){tmpLayers=layersByLvl[l];return true}};var checkLvls=function(dir){if(tmpLayers){return}for(var l=lvl+dir;minLvl<=l&&l<=maxLvl;l+=dir){if(canUseAsTmpLvl(l)){break}}};checkLvls(+1);checkLvls(-1);for(var i=layers.length-1;i>=0;i--){var layer=layers[i];if(layer.invalid){util.removeFromArray(layers,layer)}}};if(!lvlComplete){checkTempLevels()}else{return layers}var getBb=function(){if(!bb){bb=math.makeBoundingBox();for(var i=0;i<eles.length;i++){math.updateBoundingBox(bb,eles[i].boundingBox())}}return bb};var makeLayer=function(opts){opts=opts||{};var after=opts.after;getBb();var area=bb.w*scale*(bb.h*scale);if(area>maxLayerArea){return null}var layer=self.makeLayer(bb,lvl);if(after!=null){var index=layers.indexOf(after)+1;layers.splice(index,0,layer)}else if(opts.insert===undefined||opts.insert){layers.unshift(layer)}return layer};if(self.skipping&&!firstGet){return null}var layer=null;var maxElesPerLayer=eles.length/defNumLayers;var allowLazyQueueing=alwaysQueue&&!firstGet;for(var i=0;i<eles.length;i++){var ele=eles[i];var rs=ele._private.rscratch;var caches=rs.imgLayerCaches=rs.imgLayerCaches||{};var existingLayer=caches[lvl];if(existingLayer){layer=existingLayer;continue}if(!layer||layer.eles.length>=maxElesPerLayer||!math.boundingBoxInBoundingBox(layer.bb,ele.boundingBox())){layer=makeLayer({insert:true,after:layer});if(!layer){return null}}if(tmpLayers||allowLazyQueueing){self.queueLayer(layer,ele)}else{self.drawEleInLayer(layer,ele,lvl,pxRatio);
 
-}layer.eles.push(ele);caches[lvl]=layer}if(tmpLayers){return tmpLayers}if(allowLazyQueueing){return null}return layers};LTCp.getEleLevelForLayerLevel=function(lvl,pxRatio){return lvl};function imgSmoothing(context,bool){if(context.imageSmoothingEnabled!=null){context.imageSmoothingEnabled=bool}else{context.webkitImageSmoothingEnabled=bool;context.mozImageSmoothingEnabled=bool;context.msImageSmoothingEnabled=bool}}LTCp.drawEleInLayer=function(layer,ele,lvl,pxRatio){var self=this;var r=this.renderer;var context=layer.context;var bb=ele.boundingBox();if(bb.w===0||bb.h===0){return}var eleCache=self.eleTxrCache;var reason=useHighQualityEleTxrReqs?eleCache.reasons.highQuality:undefined;lvl=self.getEleLevelForLayerLevel(lvl,pxRatio);var cache=useEleTxrCaching?eleCache.getElement(ele,bb,null,lvl,reason):null;if(cache){if(disableEleImgSmoothing){imgSmoothing(context,false)}context.drawImage(cache.texture.canvas,cache.x,0,cache.width,cache.height,bb.x1,bb.y1,bb.w,bb.h);if(disableEleImgSmoothing){imgSmoothing(context,true)}}else{r.drawElement(context,ele)}};LTCp.levelIsComplete=function(lvl,eles){var self=this;var layers=self.layersByLevel[lvl];if(!layers||layers.length===0){return false}var numElesInLayers=0;for(var i=0;i<layers.length;i++){var layer=layers[i];if(layer.reqs>0){return false}if(layer.invalid){return false}numElesInLayers+=layer.eles.length}if(numElesInLayers!==eles.length){return false}return true};LTCp.validateLayersElesOrdering=function(lvl,eles){var layers=this.layersByLevel[lvl];if(!layers){return}for(var i=0;i<layers.length;i++){var layer=layers[i];var offset=-1;for(var j=0;j<eles.length;j++){if(layer.eles[0]===eles[j]){offset=j;break}}if(offset<0){this.invalidateLayer(layer);continue}var o=offset;for(var j=0;j<layer.eles.length;j++){if(layer.eles[j]!==eles[o+j]){this.invalidateLayer(layer);break}}}};LTCp.updateElementsInLayers=function(eles,update){var self=this;var isEles=is.element(eles[0]);for(var i=0;i<eles.length;i++){var req=isEles?null:eles[i];var ele=isEles?eles[i]:eles[i].ele;var rs=ele._private.rscratch;var caches=rs.imgLayerCaches=rs.imgLayerCaches||{};for(var l=minLvl;l<=maxLvl;l++){var layer=caches[l];if(!layer){continue}if(req&&self.getEleLevelForLayerLevel(layer.level)!==req.level){continue}update(layer,ele,req)}}};LTCp.haveLayers=function(){var self=this;var haveLayers=false;for(var l=minLvl;l<=maxLvl;l++){var layers=self.layersByLevel[l];if(layers&&layers.length>0){haveLayers=true;break}}return haveLayers};LTCp.invalidateElements=function(eles){var self=this;self.lastInvalidationTime=util.performanceNow();if(eles.length===0||!self.haveLayers()){return}self.updateElementsInLayers(eles,function invalAssocLayers(layer,ele,req){self.invalidateLayer(layer)})};LTCp.invalidateLayer=function(layer){this.lastInvalidationTime=util.performanceNow();if(layer.invalid){return}var lvl=layer.level;var eles=layer.eles;var layers=this.layersByLevel[lvl];util.removeFromArray(layers,layer);layer.elesQueue=[];layer.invalid=true;if(layer.replacement){layer.replacement.invalid=true}for(var i=0;i<eles.length;i++){var caches=eles[i]._private.rscratch.imgLayerCaches;if(caches){caches[lvl]=null}}};LTCp.refineElementTextures=function(eles){var self=this;self.updateElementsInLayers(eles,function refineEachEle(layer,ele,req){var rLyr=layer.replacement;if(!rLyr){rLyr=layer.replacement=self.makeLayer(layer.bb,layer.level);rLyr.replaces=layer;rLyr.eles=layer.eles}if(!rLyr.reqs){for(var i=0;i<rLyr.eles.length;i++){self.queueLayer(rLyr,rLyr.eles[i])}}})};LTCp.setupEleCacheInvalidation=function(){var self=this;var eleDeqs=[];if(!useEleTxrCaching){return}var updatedElesInLayers=util.debounce(function(){self.refineElementTextures(eleDeqs);eleDeqs=[]},refineEleDebounceTime);self.eleTxrCache.onDequeue(function(reqs){for(var i=0;i<reqs.length;i++){eleDeqs.push(reqs[i])}updatedElesInLayers()})};LTCp.queueLayer=function(layer,ele){var self=this;var q=self.layersQueue;var elesQ=layer.elesQueue;var hasId=elesQ.hasId=elesQ.hasId||{};if(layer.replacement){return}if(ele){if(hasId[ele.id()]){return}elesQ.push(ele);hasId[ele.id()]=true}if(layer.reqs){layer.reqs++;q.updateItem(layer)}else{layer.reqs=1;q.push(layer)}};LTCp.dequeue=function(pxRatio){var self=this;var q=self.layersQueue;var deqd=[];var eleDeqs=0;while(eleDeqs<maxDeqSize){if(q.size()===0){break}var layer=q.peek();if(layer.replacement){q.pop();continue}if(layer.replaces&&layer!==layer.replaces.replacement){q.pop();continue}if(layer.invalid){q.pop();continue}var ele=layer.elesQueue.shift();if(ele){self.drawEleInLayer(layer,ele,layer.level,pxRatio);eleDeqs++}if(deqd.length===0){deqd.push(true)}if(layer.elesQueue.length===0){q.pop();layer.reqs=0;if(layer.replaces){self.applyLayerReplacement(layer)}self.requestRedraw()}}return deqd};LTCp.applyLayerReplacement=function(layer){var self=this;var layersInLevel=self.layersByLevel[layer.level];var replaced=layer.replaces;var index=layersInLevel.indexOf(replaced);if(index<0||replaced.invalid){return}layersInLevel[index]=layer;for(var i=0;i<layer.eles.length;i++){var _p=layer.eles[i]._private;var cache=_p.imgLayerCaches=_p.imgLayerCaches||{};if(cache){cache[layer.level]=layer}}self.requestRedraw()};LTCp.requestRedraw=util.debounce(function(){var r=this.renderer;r.redrawHint("eles",true);r.redrawHint("drag",true);r.redraw()},100);LTCp.setupDequeueing=defs.setupDequeueing({deqRedrawThreshold:deqRedrawThreshold,deqCost:deqCost,deqAvgCost:deqAvgCost,deqNoDrawCost:deqNoDrawCost,deqFastCost:deqFastCost,deq:function(self,pxRatio){return self.dequeue(pxRatio)},onDeqd:util.noop,shouldRedraw:util.trueify,priority:function(self){return self.renderer.beforeRenderPriorities.lyrTxrDeq}});module.exports=LayeredTextureCache},{"../../../heap":112,"../../../is":114,"../../../math":116,"../../../util":131,"./texture-cache-defs":108}],107:[function(require,module,exports){"use strict";var CRp={};CRp.nodeShapeImpl=function(name,context,centerX,centerY,width,height,points){switch(name){case"ellipse":return this.drawEllipsePath(context,centerX,centerY,width,height);case"polygon":return this.drawPolygonPath(context,centerX,centerY,width,height,points);case"roundrectangle":return this.drawRoundRectanglePath(context,centerX,centerY,width,height)}};module.exports=CRp},{}],108:[function(require,module,exports){"use strict";var util=require("../../../util");var fullFpsTime=1e3/60;module.exports={setupDequeueing:function(opts){return function setupDequeueingImpl(){var self=this;var r=this.renderer;if(self.dequeueingSetup){return}else{self.dequeueingSetup=true}var queueRedraw=util.debounce(function(){r.redrawHint("eles",true);r.redrawHint("drag",true);r.redraw()},opts.deqRedrawThreshold);var dequeue=function(willDraw,frameStartTime){var startTime=util.performanceNow();var avgRenderTime=r.averageRedrawTime;var renderTime=r.lastRedrawTime;var deqd=[];var extent=r.cy.extent();var pixelRatio=r.getPixelRatio();while(true){var now=util.performanceNow();var duration=now-startTime;var frameDuration=now-frameStartTime;if(renderTime<fullFpsTime){var timeAvailable=fullFpsTime-(willDraw?avgRenderTime:0);if(frameDuration>=opts.deqFastCost*timeAvailable){break}}else{if(willDraw){if(duration>=opts.deqCost*renderTime||duration>=opts.deqAvgCost*avgRenderTime){break}}else if(frameDuration>=opts.deqNoDrawCost*fullFpsTime){break}}var thisDeqd=opts.deq(self,pixelRatio,extent);if(thisDeqd.length>0){for(var i=0;i<thisDeqd.length;i++){deqd.push(thisDeqd[i])}}else{break}}if(deqd.length>0){opts.onDeqd(self,deqd);if(!willDraw&&opts.shouldRedraw(self,deqd,pixelRatio,extent)){queueRedraw()}}};var priority=opts.priority||util.noop;r.beforeRender(dequeue,priority(self))}}}},{"../../../util":131}],109:[function(require,module,exports){"use strict";module.exports=[{name:"null",impl:require("./null")},{name:"base",impl:require("./base")},{name:"canvas",impl:require("./canvas")}]},{"./base":91,"./canvas":105,"./null":110}],110:[function(require,module,exports){"use strict";function NullRenderer(options){this.options=options;this.notifications=0}var noop=function(){};NullRenderer.prototype={recalculateRenderedStyle:noop,notify:function(){this.notifications++},init:noop};module.exports=NullRenderer},{}],111:[function(require,module,exports){"use strict";var is=require("./is");var util=require("./util");var Thread=require("./thread");var Promise=require("./promise");var define=require("./define");var Fabric=function(N){if(!(this instanceof Fabric)){return new Fabric(N)}this._private={pass:[]};var defN=4;if(is.number(N)){}if(typeof navigator!=="undefined"&&navigator.hardwareConcurrency!=null){N=navigator.hardwareConcurrency}else{try{N=require("os").cpus().length}catch(err){N=defN}}for(var i=0;i<N;i++){this[i]=new Thread}this.length=N};var fabfn=Fabric.prototype;util.extend(fabfn,{instanceString:function(){return"fabric"},require:function(fn,as){for(var i=0;i<this.length;i++){var thread=this[i];thread.require(fn,as)}return this},random:function(){var i=Math.round((this.length-1)*Math.random());var thread=this[i];return thread},run:function(fn){var pass=this._private.pass.shift();return this.random().pass(pass).run(fn)},message:function(m){return this.random().message(m)},broadcast:function(m){for(var i=0;i<this.length;i++){var thread=this[i];thread.message(m)}return this},stop:function(){for(var i=0;i<this.length;i++){var thread=this[i];thread.stop()}return this},pass:function(data){var pass=this._private.pass;if(is.array(data)){pass.push(data)}else{throw"Only arrays may be used with fabric.pass()"}return this},spreadSize:function(){var subsize=Math.ceil(this._private.pass[0].length/this.length);subsize=Math.max(1,subsize);return subsize},spread:function(fn){var self=this;var _p=self._private;var subsize=self.spreadSize();var pass=_p.pass.shift().concat([]);var runPs=[];for(var i=0;i<this.length;i++){var thread=this[i];var slice=pass.splice(0,subsize);var runP=thread.pass(slice).run(fn);runPs.push(runP);var doneEarly=pass.length===0;if(doneEarly){break}}return Promise.all(runPs).then(function(thens){var postpass=[];var p=0;for(var i=0;i<thens.length;i++){var then=thens[i];for(var j=0;j<then.length;j++){var t=then[j];postpass[p++]=t}}return postpass})},map:function(fn){var self=this;self.require(fn,"_$_$_fabmap");return self.spread(function(split){var mapped=[];var origResolve=resolve;resolve=function(val){mapped.push(val)};for(var i=0;i<split.length;i++){var oldLen=mapped.length;var ret=_$_$_fabmap(split[i]);var nothingInsdByResolve=oldLen===mapped.length;if(nothingInsdByResolve){mapped.push(ret)}}resolve=origResolve;return mapped})},filter:function(fn){var _p=this._private;var pass=_p.pass[0];return this.map(fn).then(function(include){var ret=[];for(var i=0;i<pass.length;i++){var datum=pass[i];var incDatum=include[i];if(incDatum){ret.push(datum)}}return ret})},sort:function(cmp){var self=this;var P=this._private.pass[0].length;var subsize=this.spreadSize();cmp=cmp||function(a,b){if(a<b){return-1}else if(a>b){return 1}return 0};self.require(cmp,"_$_$_cmp");return self.spread(function(split){var sortedSplit=split.sort(_$_$_cmp);resolve(sortedSplit)}).then(function(joined){var merge=function(i,j,max){j=Math.min(j,P);max=Math.min(max,P);var l=i;var r=j;var sorted=[];for(var k=l;k<max;k++){var eleI=joined[i];var eleJ=joined[j];if(i<r&&(j>=max||cmp(eleI,eleJ)<=0)){sorted.push(eleI);i++}else{sorted.push(eleJ);j++}}for(var k=0;k<sorted.length;k++){var index=l+k;joined[index]=sorted[k]}};for(var splitL=subsize;splitL<P;splitL*=2){for(var i=0;i<P;i+=2*splitL){merge(i,i+splitL,i+2*splitL)}}return joined})}});var defineRandomPasser=function(opts){opts=opts||{};return function(fn,arg1){var pass=this._private.pass.shift();return this.random().pass(pass)[opts.threadFn](fn,arg1)}};util.extend(fabfn,{randomMap:defineRandomPasser({threadFn:"map"}),reduce:defineRandomPasser({threadFn:"reduce"}),reduceRight:defineRandomPasser({threadFn:"reduceRight"})});var fn=fabfn;fn.promise=fn.run;fn.terminate=fn.halt=fn.stop;fn.include=fn.require;util.extend(fabfn,{on:define.on(),one:define.on({unbindSelfOnTrigger:true}),off:define.off(),trigger:define.trigger()});define.eventAliasesOn(fabfn);module.exports=Fabric},{"./define":75,"./is":114,"./promise":117,"./thread":129,"./util":131,os:200}],112:[function(require,module,exports){"use strict";var Heap,defaultCmp,floor,heapify,heappop,heappush,heappushpop,heapreplace,insort,min,nlargest,nsmallest,updateItem,_siftdown,_siftup;floor=Math.floor,min=Math.min;defaultCmp=function(x,y){if(x<y){return-1}if(x>y){return 1}return 0};insort=function(a,x,lo,hi,cmp){var mid;if(lo==null){lo=0}if(cmp==null){cmp=defaultCmp}if(lo<0){throw new Error("lo must be non-negative")}if(hi==null){hi=a.length}while(lo<hi){mid=floor((lo+hi)/2);if(cmp(x,a[mid])<0){hi=mid}else{lo=mid+1}}return[].splice.apply(a,[lo,lo-lo].concat(x)),x};heappush=function(array,item,cmp){if(cmp==null){cmp=defaultCmp}array.push(item);return _siftdown(array,0,array.length-1,cmp)};heappop=function(array,cmp){var lastelt,returnitem;if(cmp==null){cmp=defaultCmp}lastelt=array.pop();if(array.length){returnitem=array[0];array[0]=lastelt;_siftup(array,0,cmp)}else{returnitem=lastelt}return returnitem};heapreplace=function(array,item,cmp){var returnitem;if(cmp==null){cmp=defaultCmp}returnitem=array[0];array[0]=item;_siftup(array,0,cmp);return returnitem};heappushpop=function(array,item,cmp){var _ref;if(cmp==null){cmp=defaultCmp}if(array.length&&cmp(array[0],item)<0){_ref=[array[0],item],item=_ref[0],array[0]=_ref[1];_siftup(array,0,cmp)}return item};heapify=function(array,cmp){var i,_i,_j,_len,_ref,_ref1,_results,_results1;if(cmp==null){cmp=defaultCmp}_ref1=function(){_results1=[];for(var _j=0,_ref=floor(array.length/2);0<=_ref?_j<_ref:_j>_ref;0<=_ref?_j++:_j--){_results1.push(_j)}return _results1}.apply(this).reverse();_results=[];for(_i=0,_len=_ref1.length;_i<_len;_i++){i=_ref1[_i];_results.push(_siftup(array,i,cmp))}return _results};updateItem=function(array,item,cmp){var pos;if(cmp==null){cmp=defaultCmp}pos=array.indexOf(item);if(pos===-1){return}_siftdown(array,0,pos,cmp);return _siftup(array,pos,cmp)};nlargest=function(array,n,cmp){var elem,result,_i,_len,_ref;if(cmp==null){cmp=defaultCmp}result=array.slice(0,n);if(!result.length){return result}heapify(result,cmp);_ref=array.slice(n);for(_i=0,_len=_ref.length;_i<_len;_i++){elem=_ref[_i];heappushpop(result,elem,cmp)}return result.sort(cmp).reverse()};nsmallest=function(array,n,cmp){var elem,i,los,result,_i,_j,_len,_ref,_ref1,_results;if(cmp==null){cmp=defaultCmp}if(n*10<=array.length){result=array.slice(0,n).sort(cmp);if(!result.length){return result}los=result[result.length-1];_ref=array.slice(n);for(_i=0,_len=_ref.length;_i<_len;_i++){elem=_ref[_i];if(cmp(elem,los)<0){insort(result,elem,0,null,cmp);result.pop();los=result[result.length-1]}}return result}heapify(array,cmp);_results=[];for(i=_j=0,_ref1=min(n,array.length);0<=_ref1?_j<_ref1:_j>_ref1;i=0<=_ref1?++_j:--_j){_results.push(heappop(array,cmp))}return _results};_siftdown=function(array,startpos,pos,cmp){var newitem,parent,parentpos;if(cmp==null){cmp=defaultCmp}newitem=array[pos];while(pos>startpos){parentpos=pos-1>>1;parent=array[parentpos];if(cmp(newitem,parent)<0){array[pos]=parent;pos=parentpos;continue}break}return array[pos]=newitem};_siftup=function(array,pos,cmp){var childpos,endpos,newitem,rightpos,startpos;if(cmp==null){cmp=defaultCmp}endpos=array.length;startpos=pos;newitem=array[pos];childpos=2*pos+1;while(childpos<endpos){rightpos=childpos+1;if(rightpos<endpos&&!(cmp(array[childpos],array[rightpos])<0)){childpos=rightpos}array[pos]=array[childpos];pos=childpos;childpos=2*pos+1}array[pos]=newitem;return _siftdown(array,startpos,pos,cmp)};Heap=function(){Heap.push=heappush;Heap.pop=heappop;Heap.replace=heapreplace;Heap.pushpop=heappushpop;Heap.heapify=heapify;Heap.updateItem=updateItem;Heap.nlargest=nlargest;Heap.nsmallest=nsmallest;function Heap(cmp){this.cmp=cmp!=null?cmp:defaultCmp;this.nodes=[]}Heap.prototype.push=function(x){return heappush(this.nodes,x,this.cmp)};Heap.prototype.pop=function(){return heappop(this.nodes,this.cmp)};Heap.prototype.peek=function(){return this.nodes[0]};Heap.prototype.contains=function(x){return this.nodes.indexOf(x)!==-1};Heap.prototype.replace=function(x){return heapreplace(this.nodes,x,this.cmp)};Heap.prototype.pushpop=function(x){return heappushpop(this.nodes,x,this.cmp)};Heap.prototype.heapify=function(){return heapify(this.nodes,this.cmp)};Heap.prototype.updateItem=function(x){return updateItem(this.nodes,x,this.cmp)};Heap.prototype.clear=function(){return this.nodes=[]};Heap.prototype.empty=function(){return this.nodes.length===0};Heap.prototype.size=function(){return this.nodes.length};Heap.prototype.clone=function(){var heap;heap=new Heap;heap.nodes=this.nodes.slice(0);return heap};Heap.prototype.toArray=function(){return this.nodes.slice(0)};Heap.prototype.insert=Heap.prototype.push;Heap.prototype.top=Heap.prototype.peek;Heap.prototype.front=Heap.prototype.peek;Heap.prototype.has=Heap.prototype.contains;Heap.prototype.copy=Heap.prototype.clone;return Heap}();module.exports=Heap},{}],113:[function(require,module,exports){"use strict";require("./-preamble");var window=require("./window");var is=require("./is");var Core=require("./core");var extension=require("./extension");var registerJquery=require("./jquery-plugin");var Stylesheet=require("./stylesheet");var Thread=require("./thread");var Fabric=require("./fabric");var cytoscape=function(options){if(options===undefined){options={}}if(is.plainObject(options)){return new Core(options)}else if(is.string(options)){return extension.apply(extension,arguments)}};cytoscape.version=require("./version.json");if(window&&window.jQuery){registerJquery(window.jQuery,cytoscape)}cytoscape.registerJquery=function(jQuery){registerJquery(jQuery,cytoscape)};cytoscape.stylesheet=cytoscape.Stylesheet=Stylesheet;cytoscape.thread=cytoscape.Thread=Thread;cytoscape.fabric=cytoscape.Fabric=Fabric;module.exports=cytoscape},{"./-preamble":32,"./core":68,"./extension":77,"./fabric":111,"./is":114,"./jquery-plugin":115,"./stylesheet":128,"./thread":129,"./version.json":137,"./window":138}],114:[function(require,module,exports){"use strict";var window=require("./window");var navigator=window?window.navigator:null;var document=window?window.document:null;var typeofstr=typeof"";var typeofobj=typeof{};var typeoffn=typeof function(){};var typeofhtmlele=typeof HTMLElement;var instanceStr=function(obj){return obj&&obj.instanceString&&is.fn(obj.instanceString)?obj.instanceString():null};var is={defined:function(obj){return obj!=null},string:function(obj){return obj!=null&&typeof obj==typeofstr},fn:function(obj){return obj!=null&&typeof obj===typeoffn},array:function(obj){return Array.isArray?Array.isArray(obj):obj!=null&&obj instanceof Array},plainObject:function(obj){return obj!=null&&typeof obj===typeofobj&&!is.array(obj)&&obj.constructor===Object},object:function(obj){return obj!=null&&typeof obj===typeofobj},number:function(obj){return obj!=null&&typeof obj===typeof 1&&!isNaN(obj)},integer:function(obj){return is.number(obj)&&Math.floor(obj)===obj},bool:function(obj){return obj!=null&&typeof obj===typeof true},htmlElement:function(obj){if("undefined"===typeofhtmlele){return undefined}else{return null!=obj&&obj instanceof HTMLElement}},elementOrCollection:function(obj){return is.element(obj)||is.collection(obj)},element:function(obj){return instanceStr(obj)==="collection"&&obj._private.single},collection:function(obj){return instanceStr(obj)==="collection"&&!obj._private.single},core:function(obj){return instanceStr(obj)==="core"},style:function(obj){return instanceStr(obj)==="style"},stylesheet:function(obj){return instanceStr(obj)==="stylesheet"},event:function(obj){return instanceStr(obj)==="event"},thread:function(obj){return instanceStr(obj)==="thread"},fabric:function(obj){return instanceStr(obj)==="fabric"},emptyString:function(obj){if(obj===undefined||obj===null){return true}else if(obj===""||obj.match(/^\s+$/)){return true}return false},nonemptyString:function(obj){if(obj&&is.string(obj)&&obj!==""&&!obj.match(/^\s+$/)){return true}return false},domElement:function(obj){if(typeof HTMLElement==="undefined"){return false}else{return obj instanceof HTMLElement}},boundingBox:function(obj){return is.plainObject(obj)&&is.number(obj.x1)&&is.number(obj.x2)&&is.number(obj.y1)&&is.number(obj.y2)},promise:function(obj){return is.object(obj)&&is.fn(obj.then)},touch:function(){return window&&("ontouchstart"in window||window.DocumentTouch&&document instanceof DocumentTouch)},gecko:function(){return window&&(typeof InstallTrigger!=="undefined"||"MozAppearance"in document.documentElement.style)},webkit:function(){return window&&(typeof webkitURL!=="undefined"||"WebkitAppearance"in document.documentElement.style)},chromium:function(){return window&&typeof chrome!=="undefined"},khtml:function(){return navigator&&navigator.vendor.match(/kde/i)},khtmlEtc:function(){return is.khtml()||is.webkit()||is.chromium()},ms:function(){return navigator&&navigator.userAgent.match(/msie|trident|edge/i)},windows:function(){return navigator&&navigator.appVersion.match(/Win/i)},mac:function(){return navigator&&navigator.appVersion.match(/Mac/i)},linux:function(){return navigator&&navigator.appVersion.match(/Linux/i)},unix:function(){return navigator&&navigator.appVersion.match(/X11/i)}};module.exports=is},{"./window":138}],115:[function(require,module,exports){"use strict";var is=require("./is");var cyReg=function($ele){var d=$ele[0]._cyreg=$ele[0]._cyreg||{};return d};var registerJquery=function($,cytoscape){if(!$){return}if($.fn.cytoscape){return}$.fn.cytoscape=function(opts){var $this=$(this);if(opts==="get"){return cyReg($this).cy}else if(is.fn(opts)){var ready=opts;var cy=cyReg($this).cy;if(cy&&cy.isReady()){cy.trigger("ready",[],ready)}else{var data=cyReg($this);var readies=data.readies=data.readies||[];readies.push(ready)}}else if(is.plainObject(opts)){return $this.each(function(){var options=$.extend({},opts,{container:$(this)[0]});cytoscape(options)})}};$.cytoscape=cytoscape;if($.fn.cy==null&&$.cy==null){$.fn.cy=$.fn.cytoscape;$.cy=$.cytoscape}};module.exports=registerJquery},{"./is":114}],116:[function(require,module,exports){"use strict";var math={};math.arePositionsSame=function(p1,p2){return p1.x===p2.x&&p1.y===p2.y};math.copyPosition=function(p){return{x:p.x,y:p.y}};math.array2point=function(arr){return{x:arr[0],y:arr[1]}};math.deg2rad=function(deg){return Math.PI*deg/180};math.log2=Math.log2||function(n){return Math.log(n)/Math.log(2)};math.signum=function(x){if(x>0){return 1}else if(x<0){return-1}else{return 0}};math.dist=function(p1,p2){return Math.sqrt(math.sqdist(p1,p2))};math.sqdist=function(p1,p2){var dx=p2.x-p1.x;var dy=p2.y-p1.y;return dx*dx+dy*dy};math.qbezierAt=function(p0,p1,p2,t){return(1-t)*(1-t)*p0+2*(1-t)*t*p1+t*t*p2};math.qbezierPtAt=function(p0,p1,p2,t){return{x:math.qbezierAt(p0.x,p1.x,p2.x,t),y:math.qbezierAt(p0.y,p1.y,p2.y,t)}};math.lineAt=function(p0,p1,t,d){var vec={x:p1.x-p0.x,y:p1.y-p0.y};var vecDist=math.dist(p0,p1);var normVec={x:vec.x/vecDist,y:vec.y/vecDist};t=t==null?0:t;var d=d!=null?d:t*vecDist;return{x:p0.x+normVec.x*d,y:p0.y+normVec.y*d}};math.lineAtDist=function(p0,p1,d){return math.lineAt(p0,p1,undefined,d)};math.triangleAngle=function(A,B,C){var a=math.dist(B,C);var b=math.dist(A,C);var c=math.dist(A,B);return Math.acos((a*a+b*b-c*c)/(2*a*b))};math.bound=function(min,val,max){return Math.max(min,Math.min(max,val))};math.makeBoundingBox=function(bb){if(bb==null){return{x1:Infinity,y1:Infinity,x2:-Infinity,y2:-Infinity,w:0,h:0}}else if(bb.x1!=null&&bb.y1!=null){if(bb.x2!=null&&bb.y2!=null&&bb.x2>=bb.x1&&bb.y2>=bb.y1){return{x1:bb.x1,y1:bb.y1,x2:bb.x2,y2:bb.y2,w:bb.x2-bb.x1,h:bb.y2-bb.y1}}else if(bb.w!=null&&bb.h!=null&&bb.w>=0&&bb.h>=0){return{x1:bb.x1,y1:bb.y1,x2:bb.x1+bb.w,y2:bb.y1+bb.h,w:bb.w,h:bb.h}}}};math.updateBoundingBox=function(bb1,bb2){bb1.x1=Math.min(bb1.x1,bb2.x1);bb1.x2=Math.max(bb1.x2,bb2.x2);bb1.w=bb1.x2-bb1.x1;bb1.y1=Math.min(bb1.y1,bb2.y1);bb1.y2=Math.max(bb1.y2,bb2.y2);bb1.h=bb1.y2-bb1.y1};math.expandBoundingBox=function(bb,padding){bb.x1-=padding;bb.x2+=padding;bb.y1-=padding;bb.y2+=padding;bb.w=bb.x2-bb.x1;bb.h=bb.y2-bb.y1;return bb};math.boundingBoxesIntersect=function(bb1,bb2){if(bb1.x1>bb2.x2){return false}if(bb2.x1>bb1.x2){return false}if(bb1.x2<bb2.x1){return false}if(bb2.x2<bb1.x1){return false}if(bb1.y2<bb2.y1){return false}if(bb2.y2<bb1.y1){return false}if(bb1.y1>bb2.y2){return false}if(bb2.y1>bb1.y2){return false}return true};math.inBoundingBox=function(bb,x,y){return bb.x1<=x&&x<=bb.x2&&bb.y1<=y&&y<=bb.y2};math.pointInBoundingBox=function(bb,pt){return this.inBoundingBox(bb,pt.x,pt.y)};math.boundingBoxInBoundingBox=function(bb1,bb2){return math.inBoundingBox(bb1,bb2.x1,bb2.y1)&&math.inBoundingBox(bb1,bb2.x2,bb2.y2)};math.roundRectangleIntersectLine=function(x,y,nodeX,nodeY,width,height,padding){var cornerRadius=this.getRoundRectangleRadius(width,height);var halfWidth=width/2;var halfHeight=height/2;var straightLineIntersections;{var topStartX=nodeX-halfWidth+cornerRadius-padding;var topStartY=nodeY-halfHeight-padding;var topEndX=nodeX+halfWidth-cornerRadius+padding;var topEndY=topStartY;straightLineIntersections=this.finiteLinesIntersect(x,y,nodeX,nodeY,topStartX,topStartY,topEndX,topEndY,false);if(straightLineIntersections.length>0){return straightLineIntersections}}{var rightStartX=nodeX+halfWidth+padding;var rightStartY=nodeY-halfHeight+cornerRadius-padding;var rightEndX=rightStartX;var rightEndY=nodeY+halfHeight-cornerRadius+padding;straightLineIntersections=this.finiteLinesIntersect(x,y,nodeX,nodeY,rightStartX,rightStartY,rightEndX,rightEndY,false);if(straightLineIntersections.length>0){return straightLineIntersections}}{var bottomStartX=nodeX-halfWidth+cornerRadius-padding;var bottomStartY=nodeY+halfHeight+padding;var bottomEndX=nodeX+halfWidth-cornerRadius+padding;var bottomEndY=bottomStartY;straightLineIntersections=this.finiteLinesIntersect(x,y,nodeX,nodeY,bottomStartX,bottomStartY,bottomEndX,bottomEndY,false);if(straightLineIntersections.length>0){return straightLineIntersections}}{var leftStartX=nodeX-halfWidth-padding;var leftStartY=nodeY-halfHeight+cornerRadius-padding;var leftEndX=leftStartX;var leftEndY=nodeY+halfHeight-cornerRadius+padding;straightLineIntersections=this.finiteLinesIntersect(x,y,nodeX,nodeY,leftStartX,leftStartY,leftEndX,leftEndY,false);if(straightLineIntersections.length>0){return straightLineIntersections}}var arcIntersections;{var topLeftCenterX=nodeX-halfWidth+cornerRadius;var topLeftCenterY=nodeY-halfHeight+cornerRadius;arcIntersections=this.intersectLineCircle(x,y,nodeX,nodeY,topLeftCenterX,topLeftCenterY,cornerRadius+padding);if(arcIntersections.length>0&&arcIntersections[0]<=topLeftCenterX&&arcIntersections[1]<=topLeftCenterY){return[arcIntersections[0],arcIntersections[1]]}}{var topRightCenterX=nodeX+halfWidth-cornerRadius;var topRightCenterY=nodeY-halfHeight+cornerRadius;arcIntersections=this.intersectLineCircle(x,y,nodeX,nodeY,topRightCenterX,topRightCenterY,cornerRadius+padding);if(arcIntersections.length>0&&arcIntersections[0]>=topRightCenterX&&arcIntersections[1]<=topRightCenterY){return[arcIntersections[0],arcIntersections[1]]}}{var bottomRightCenterX=nodeX+halfWidth-cornerRadius;var bottomRightCenterY=nodeY+halfHeight-cornerRadius;arcIntersections=this.intersectLineCircle(x,y,nodeX,nodeY,bottomRightCenterX,bottomRightCenterY,cornerRadius+padding);if(arcIntersections.length>0&&arcIntersections[0]>=bottomRightCenterX&&arcIntersections[1]>=bottomRightCenterY){return[arcIntersections[0],arcIntersections[1]]}}{var bottomLeftCenterX=nodeX-halfWidth+cornerRadius;var bottomLeftCenterY=nodeY+halfHeight-cornerRadius;arcIntersections=this.intersectLineCircle(x,y,nodeX,nodeY,bottomLeftCenterX,bottomLeftCenterY,cornerRadius+padding);if(arcIntersections.length>0&&arcIntersections[0]<=bottomLeftCenterX&&arcIntersections[1]>=bottomLeftCenterY){return[arcIntersections[0],arcIntersections[1]]}}return[]};math.inLineVicinity=function(x,y,lx1,ly1,lx2,ly2,tolerance){var t=tolerance;var x1=Math.min(lx1,lx2);var x2=Math.max(lx1,lx2);var y1=Math.min(ly1,ly2);var y2=Math.max(ly1,ly2);return x1-t<=x&&x<=x2+t&&y1-t<=y&&y<=y2+t};math.inBezierVicinity=function(x,y,x1,y1,x2,y2,x3,y3,tolerance){var bb={x1:Math.min(x1,x3,x2)-tolerance,x2:Math.max(x1,x3,x2)+tolerance,y1:Math.min(y1,y3,y2)-tolerance,y2:Math.max(y1,y3,y2)+tolerance};if(x<bb.x1||x>bb.x2||y<bb.y1||y>bb.y2){return false}else{return true}};math.solveCubic=function(a,b,c,d,result){b/=a;c/=a;d/=a;var discriminant,q,r,dum1,s,t,term1,r13;q=(3*c-b*b)/9;r=-(27*d)+b*(9*c-2*(b*b));r/=54;discriminant=q*q*q+r*r;result[1]=0;term1=b/3;if(discriminant>0){s=r+Math.sqrt(discriminant);s=s<0?-Math.pow(-s,1/3):Math.pow(s,1/3);t=r-Math.sqrt(discriminant);t=t<0?-Math.pow(-t,1/3):Math.pow(t,1/3);result[0]=-term1+s+t;term1+=(s+t)/2;result[4]=result[2]=-term1;term1=Math.sqrt(3)*(-t+s)/2;result[3]=term1;result[5]=-term1;return}result[5]=result[3]=0;if(discriminant===0){r13=r<0?-Math.pow(-r,1/3):Math.pow(r,1/3);result[0]=-term1+2*r13;result[4]=result[2]=-(r13+term1);return}q=-q;dum1=q*q*q;dum1=Math.acos(r/Math.sqrt(dum1));r13=2*Math.sqrt(q);result[0]=-term1+r13*Math.cos(dum1/3);result[2]=-term1+r13*Math.cos((dum1+2*Math.PI)/3);result[4]=-term1+r13*Math.cos((dum1+4*Math.PI)/3);return};math.sqdistToQuadraticBezier=function(x,y,x1,y1,x2,y2,x3,y3){var a=1*x1*x1-4*x1*x2+2*x1*x3+4*x2*x2-4*x2*x3+x3*x3+y1*y1-4*y1*y2+2*y1*y3+4*y2*y2-4*y2*y3+y3*y3;var b=1*9*x1*x2-3*x1*x1-3*x1*x3-6*x2*x2+3*x2*x3+9*y1*y2-3*y1*y1-3*y1*y3-6*y2*y2+3*y2*y3;var c=1*3*x1*x1-6*x1*x2+x1*x3-x1*x+2*x2*x2+2*x2*x-x3*x+3*y1*y1-6*y1*y2+y1*y3-y1*y+2*y2*y2+2*y2*y-y3*y;var d=1*x1*x2-x1*x1+x1*x-x2*x+y1*y2-y1*y1+y1*y-y2*y;var roots=[];this.solveCubic(a,b,c,d,roots);var zeroThreshold=1e-7;var params=[];for(var index=0;index<6;index+=2){if(Math.abs(roots[index+1])<zeroThreshold&&roots[index]>=0&&roots[index]<=1){params.push(roots[index])}}params.push(1);params.push(0);var minDistanceSquared=-1;var closestParam;var curX,curY,distSquared;for(var i=0;i<params.length;i++){curX=Math.pow(1-params[i],2)*x1+2*(1-params[i])*params[i]*x2+params[i]*params[i]*x3;curY=Math.pow(1-params[i],2)*y1+2*(1-params[i])*params[i]*y2+params[i]*params[i]*y3;distSquared=Math.pow(curX-x,2)+Math.pow(curY-y,2);if(minDistanceSquared>=0){if(distSquared<minDistanceSquared){minDistanceSquared=distSquared;closestParam=params[i]}}else{minDistanceSquared=distSquared;closestParam=params[i]}}return minDistanceSquared};math.sqdistToFiniteLine=function(x,y,x1,y1,x2,y2){var offset=[x-x1,y-y1];var line=[x2-x1,y2-y1];var lineSq=line[0]*line[0]+line[1]*line[1];var hypSq=offset[0]*offset[0]+offset[1]*offset[1];var dotProduct=offset[0]*line[0]+offset[1]*line[1];var adjSq=dotProduct*dotProduct/lineSq;if(dotProduct<0){return hypSq}if(adjSq>lineSq){return(x-x2)*(x-x2)+(y-y2)*(y-y2)}return hypSq-adjSq};math.pointInsidePolygonPoints=function(x,y,points){var x1,y1,x2,y2;var y3;var up=0;var down=0;for(var i=0;i<points.length/2;i++){x1=points[i*2];y1=points[i*2+1];if(i+1<points.length/2){x2=points[(i+1)*2];y2=points[(i+1)*2+1]}else{x2=points[(i+1-points.length/2)*2];y2=points[(i+1-points.length/2)*2+1]}if(x1==x&&x2==x){}else if(x1>=x&&x>=x2||x1<=x&&x<=x2){y3=(x-x1)/(x2-x1)*(y2-y1)+y1;if(y3>y){up++}if(y3<y){down++}}else{continue}}if(up%2===0){return false}else{return true}};math.pointInsidePolygon=function(x,y,basePoints,centerX,centerY,width,height,direction,padding){var transformedPoints=new Array(basePoints.length);var angle;if(direction[0]!=null){angle=Math.atan(direction[1]/direction[0]);if(direction[0]<0){angle=angle+Math.PI/2}else{angle=-angle-Math.PI/2}}else{angle=direction}var cos=Math.cos(-angle);var sin=Math.sin(-angle);for(var i=0;i<transformedPoints.length/2;i++){transformedPoints[i*2]=width/2*(basePoints[i*2]*cos-basePoints[i*2+1]*sin);transformedPoints[i*2+1]=height/2*(basePoints[i*2+1]*cos+basePoints[i*2]*sin);transformedPoints[i*2]+=centerX;transformedPoints[i*2+1]+=centerY}var points;if(padding>0){var expandedLineSet=this.expandPolygon(transformedPoints,-padding);
+}layer.eles.push(ele);caches[lvl]=layer}if(tmpLayers){return tmpLayers}if(allowLazyQueueing){return null}return layers};LTCp.getEleLevelForLayerLevel=function(lvl,pxRatio){return lvl};function imgSmoothing(context,bool){if(context.imageSmoothingEnabled!=null){context.imageSmoothingEnabled=bool}else{context.webkitImageSmoothingEnabled=bool;context.mozImageSmoothingEnabled=bool;context.msImageSmoothingEnabled=bool}}LTCp.drawEleInLayer=function(layer,ele,lvl,pxRatio){var self=this;var r=this.renderer;var context=layer.context;var bb=ele.boundingBox();if(bb.w===0||bb.h===0){return}var eleCache=self.eleTxrCache;var reason=useHighQualityEleTxrReqs?eleCache.reasons.highQuality:undefined;lvl=self.getEleLevelForLayerLevel(lvl,pxRatio);var cache=useEleTxrCaching?eleCache.getElement(ele,bb,null,lvl,reason):null;if(cache){if(disableEleImgSmoothing){imgSmoothing(context,false)}context.drawImage(cache.texture.canvas,cache.x,0,cache.width,cache.height,bb.x1,bb.y1,bb.w,bb.h);if(disableEleImgSmoothing){imgSmoothing(context,true)}}else{r.drawElement(context,ele)}};LTCp.levelIsComplete=function(lvl,eles){var self=this;var layers=self.layersByLevel[lvl];if(!layers||layers.length===0){return false}var numElesInLayers=0;for(var i=0;i<layers.length;i++){var layer=layers[i];if(layer.reqs>0){return false}if(layer.invalid){return false}numElesInLayers+=layer.eles.length}if(numElesInLayers!==eles.length){return false}return true};LTCp.validateLayersElesOrdering=function(lvl,eles){var layers=this.layersByLevel[lvl];if(!layers){return}for(var i=0;i<layers.length;i++){var layer=layers[i];var offset=-1;for(var j=0;j<eles.length;j++){if(layer.eles[0]===eles[j]){offset=j;break}}if(offset<0){this.invalidateLayer(layer);continue}var o=offset;for(var j=0;j<layer.eles.length;j++){if(layer.eles[j]!==eles[o+j]){this.invalidateLayer(layer);break}}}};LTCp.updateElementsInLayers=function(eles,update){var self=this;var isEles=is.element(eles[0]);for(var i=0;i<eles.length;i++){var req=isEles?null:eles[i];var ele=isEles?eles[i]:eles[i].ele;var rs=ele._private.rscratch;var caches=rs.imgLayerCaches=rs.imgLayerCaches||{};for(var l=minLvl;l<=maxLvl;l++){var layer=caches[l];if(!layer){continue}if(req&&self.getEleLevelForLayerLevel(layer.level)!==req.level){continue}update(layer,ele,req)}}};LTCp.haveLayers=function(){var self=this;var haveLayers=false;for(var l=minLvl;l<=maxLvl;l++){var layers=self.layersByLevel[l];if(layers&&layers.length>0){haveLayers=true;break}}return haveLayers};LTCp.invalidateElements=function(eles){var self=this;self.lastInvalidationTime=util.performanceNow();if(eles.length===0||!self.haveLayers()){return}self.updateElementsInLayers(eles,function invalAssocLayers(layer,ele,req){self.invalidateLayer(layer)})};LTCp.invalidateLayer=function(layer){this.lastInvalidationTime=util.performanceNow();if(layer.invalid){return}var lvl=layer.level;var eles=layer.eles;var layers=this.layersByLevel[lvl];util.removeFromArray(layers,layer);layer.elesQueue=[];layer.invalid=true;if(layer.replacement){layer.replacement.invalid=true}for(var i=0;i<eles.length;i++){var caches=eles[i]._private.rscratch.imgLayerCaches;if(caches){caches[lvl]=null}}};LTCp.refineElementTextures=function(eles){var self=this;self.updateElementsInLayers(eles,function refineEachEle(layer,ele,req){var rLyr=layer.replacement;if(!rLyr){rLyr=layer.replacement=self.makeLayer(layer.bb,layer.level);rLyr.replaces=layer;rLyr.eles=layer.eles}if(!rLyr.reqs){for(var i=0;i<rLyr.eles.length;i++){self.queueLayer(rLyr,rLyr.eles[i])}}})};LTCp.setupEleCacheInvalidation=function(){var self=this;var eleDeqs=[];if(!useEleTxrCaching){return}var updatedElesInLayers=util.debounce(function(){self.refineElementTextures(eleDeqs);eleDeqs=[]},refineEleDebounceTime);self.eleTxrCache.onDequeue(function(reqs){for(var i=0;i<reqs.length;i++){eleDeqs.push(reqs[i])}updatedElesInLayers()})};LTCp.queueLayer=function(layer,ele){var self=this;var q=self.layersQueue;var elesQ=layer.elesQueue;var hasId=elesQ.hasId=elesQ.hasId||{};if(layer.replacement){return}if(ele){if(hasId[ele.id()]){return}elesQ.push(ele);hasId[ele.id()]=true}if(layer.reqs){layer.reqs++;q.updateItem(layer)}else{layer.reqs=1;q.push(layer)}};LTCp.dequeue=function(pxRatio){var self=this;var q=self.layersQueue;var deqd=[];var eleDeqs=0;while(eleDeqs<maxDeqSize){if(q.size()===0){break}var layer=q.peek();if(layer.replacement){q.pop();continue}if(layer.replaces&&layer!==layer.replaces.replacement){q.pop();continue}if(layer.invalid){q.pop();continue}var ele=layer.elesQueue.shift();if(ele){self.drawEleInLayer(layer,ele,layer.level,pxRatio);eleDeqs++}if(deqd.length===0){deqd.push(true)}if(layer.elesQueue.length===0){q.pop();layer.reqs=0;if(layer.replaces){self.applyLayerReplacement(layer)}self.requestRedraw()}}return deqd};LTCp.applyLayerReplacement=function(layer){var self=this;var layersInLevel=self.layersByLevel[layer.level];var replaced=layer.replaces;var index=layersInLevel.indexOf(replaced);if(index<0||replaced.invalid){return}layersInLevel[index]=layer;for(var i=0;i<layer.eles.length;i++){var _p=layer.eles[i]._private;var cache=_p.imgLayerCaches=_p.imgLayerCaches||{};if(cache){cache[layer.level]=layer}}self.requestRedraw()};LTCp.requestRedraw=util.debounce(function(){var r=this.renderer;r.redrawHint("eles",true);r.redrawHint("drag",true);r.redraw()},100);LTCp.setupDequeueing=defs.setupDequeueing({deqRedrawThreshold:deqRedrawThreshold,deqCost:deqCost,deqAvgCost:deqAvgCost,deqNoDrawCost:deqNoDrawCost,deqFastCost:deqFastCost,deq:function(self,pxRatio){return self.dequeue(pxRatio)},onDeqd:util.noop,shouldRedraw:util.trueify,priority:function(self){return self.renderer.beforeRenderPriorities.lyrTxrDeq}});module.exports=LayeredTextureCache},{"../../../heap":112,"../../../is":114,"../../../math":116,"../../../util":131,"./texture-cache-defs":108}],107:[function(require,module,exports){"use strict";var CRp={};CRp.nodeShapeImpl=function(name,context,centerX,centerY,width,height,points){switch(name){case"ellipse":return this.drawEllipsePath(context,centerX,centerY,width,height);case"polygon":return this.drawPolygonPath(context,centerX,centerY,width,height,points);case"roundrectangle":return this.drawRoundRectanglePath(context,centerX,centerY,width,height)}};module.exports=CRp},{}],108:[function(require,module,exports){"use strict";var util=require("../../../util");var fullFpsTime=1e3/60;module.exports={setupDequeueing:function(opts){return function setupDequeueingImpl(){var self=this;var r=this.renderer;if(self.dequeueingSetup){return}else{self.dequeueingSetup=true}var queueRedraw=util.debounce(function(){r.redrawHint("eles",true);r.redrawHint("drag",true);r.redraw()},opts.deqRedrawThreshold);var dequeue=function(willDraw,frameStartTime){var startTime=util.performanceNow();var avgRenderTime=r.averageRedrawTime;var renderTime=r.lastRedrawTime;var deqd=[];var extent=r.cy.extent();var pixelRatio=r.getPixelRatio();while(true){var now=util.performanceNow();var duration=now-startTime;var frameDuration=now-frameStartTime;if(renderTime<fullFpsTime){var timeAvailable=fullFpsTime-(willDraw?avgRenderTime:0);if(frameDuration>=opts.deqFastCost*timeAvailable){break}}else{if(willDraw){if(duration>=opts.deqCost*renderTime||duration>=opts.deqAvgCost*avgRenderTime){break}}else if(frameDuration>=opts.deqNoDrawCost*fullFpsTime){break}}var thisDeqd=opts.deq(self,pixelRatio,extent);if(thisDeqd.length>0){for(var i=0;i<thisDeqd.length;i++){deqd.push(thisDeqd[i])}}else{break}}if(deqd.length>0){opts.onDeqd(self,deqd);if(!willDraw&&opts.shouldRedraw(self,deqd,pixelRatio,extent)){queueRedraw()}}};var priority=opts.priority||util.noop;r.beforeRender(dequeue,priority(self))}}}},{"../../../util":131}],109:[function(require,module,exports){"use strict";module.exports=[{name:"null",impl:require("./null")},{name:"base",impl:require("./base")},{name:"canvas",impl:require("./canvas")}]},{"./base":91,"./canvas":105,"./null":110}],110:[function(require,module,exports){"use strict";function NullRenderer(options){this.options=options;this.notifications=0}var noop=function(){};NullRenderer.prototype={recalculateRenderedStyle:noop,notify:function(){this.notifications++},init:noop};module.exports=NullRenderer},{}],111:[function(require,module,exports){"use strict";var is=require("./is");var util=require("./util");var Thread=require("./thread");var Promise=require("./promise");var define=require("./define");var Fabric=function(N){if(!(this instanceof Fabric)){return new Fabric(N)}this._private={pass:[]};var defN=4;if(is.number(N)){}if(typeof navigator!=="undefined"&&navigator.hardwareConcurrency!=null){N=navigator.hardwareConcurrency}else{try{N=require("os").cpus().length}catch(err){N=defN}}for(var i=0;i<N;i++){this[i]=new Thread}this.length=N};var fabfn=Fabric.prototype;util.extend(fabfn,{instanceString:function(){return"fabric"},require:function(fn,as){for(var i=0;i<this.length;i++){var thread=this[i];thread.require(fn,as)}return this},random:function(){var i=Math.round((this.length-1)*Math.random());var thread=this[i];return thread},run:function(fn){var pass=this._private.pass.shift();return this.random().pass(pass).run(fn)},message:function(m){return this.random().message(m)},broadcast:function(m){for(var i=0;i<this.length;i++){var thread=this[i];thread.message(m)}return this},stop:function(){for(var i=0;i<this.length;i++){var thread=this[i];thread.stop()}return this},pass:function(data){var pass=this._private.pass;if(is.array(data)){pass.push(data)}else{throw"Only arrays may be used with fabric.pass()"}return this},spreadSize:function(){var subsize=Math.ceil(this._private.pass[0].length/this.length);subsize=Math.max(1,subsize);return subsize},spread:function(fn){var self=this;var _p=self._private;var subsize=self.spreadSize();var pass=_p.pass.shift().concat([]);var runPs=[];for(var i=0;i<this.length;i++){var thread=this[i];var slice=pass.splice(0,subsize);var runP=thread.pass(slice).run(fn);runPs.push(runP);var doneEarly=pass.length===0;if(doneEarly){break}}return Promise.all(runPs).then(function(thens){var postpass=[];var p=0;for(var i=0;i<thens.length;i++){var then=thens[i];for(var j=0;j<then.length;j++){var t=then[j];postpass[p++]=t}}return postpass})},map:function(fn){var self=this;self.require(fn,"_$_$_fabmap");return self.spread(function(split){var mapped=[];var origResolve=resolve;resolve=function(val){mapped.push(val)};for(var i=0;i<split.length;i++){var oldLen=mapped.length;var ret=_$_$_fabmap(split[i]);var nothingInsdByResolve=oldLen===mapped.length;if(nothingInsdByResolve){mapped.push(ret)}}resolve=origResolve;return mapped})},filter:function(fn){var _p=this._private;var pass=_p.pass[0];return this.map(fn).then(function(include){var ret=[];for(var i=0;i<pass.length;i++){var datum=pass[i];var incDatum=include[i];if(incDatum){ret.push(datum)}}return ret})},sort:function(cmp){var self=this;var P=this._private.pass[0].length;var subsize=this.spreadSize();cmp=cmp||function(a,b){if(a<b){return-1}else if(a>b){return 1}return 0};self.require(cmp,"_$_$_cmp");return self.spread(function(split){var sortedSplit=split.sort(_$_$_cmp);resolve(sortedSplit)}).then(function(joined){var merge=function(i,j,max){j=Math.min(j,P);max=Math.min(max,P);var l=i;var r=j;var sorted=[];for(var k=l;k<max;k++){var eleI=joined[i];var eleJ=joined[j];if(i<r&&(j>=max||cmp(eleI,eleJ)<=0)){sorted.push(eleI);i++}else{sorted.push(eleJ);j++}}for(var k=0;k<sorted.length;k++){var index=l+k;joined[index]=sorted[k]}};for(var splitL=subsize;splitL<P;splitL*=2){for(var i=0;i<P;i+=2*splitL){merge(i,i+splitL,i+2*splitL)}}return joined})}});var defineRandomPasser=function(opts){opts=opts||{};return function(fn,arg1){var pass=this._private.pass.shift();return this.random().pass(pass)[opts.threadFn](fn,arg1)}};util.extend(fabfn,{randomMap:defineRandomPasser({threadFn:"map"}),reduce:defineRandomPasser({threadFn:"reduce"}),reduceRight:defineRandomPasser({threadFn:"reduceRight"})});var fn=fabfn;fn.promise=fn.run;fn.terminate=fn.halt=fn.stop;fn.include=fn.require;util.extend(fabfn,{on:define.on(),one:define.on({unbindSelfOnTrigger:true}),off:define.off(),trigger:define.trigger()});define.eventAliasesOn(fabfn);module.exports=Fabric},{"./define":75,"./is":114,"./promise":117,"./thread":129,"./util":131,os:201}],112:[function(require,module,exports){"use strict";var Heap,defaultCmp,floor,heapify,heappop,heappush,heappushpop,heapreplace,insort,min,nlargest,nsmallest,updateItem,_siftdown,_siftup;floor=Math.floor,min=Math.min;defaultCmp=function(x,y){if(x<y){return-1}if(x>y){return 1}return 0};insort=function(a,x,lo,hi,cmp){var mid;if(lo==null){lo=0}if(cmp==null){cmp=defaultCmp}if(lo<0){throw new Error("lo must be non-negative")}if(hi==null){hi=a.length}while(lo<hi){mid=floor((lo+hi)/2);if(cmp(x,a[mid])<0){hi=mid}else{lo=mid+1}}return[].splice.apply(a,[lo,lo-lo].concat(x)),x};heappush=function(array,item,cmp){if(cmp==null){cmp=defaultCmp}array.push(item);return _siftdown(array,0,array.length-1,cmp)};heappop=function(array,cmp){var lastelt,returnitem;if(cmp==null){cmp=defaultCmp}lastelt=array.pop();if(array.length){returnitem=array[0];array[0]=lastelt;_siftup(array,0,cmp)}else{returnitem=lastelt}return returnitem};heapreplace=function(array,item,cmp){var returnitem;if(cmp==null){cmp=defaultCmp}returnitem=array[0];array[0]=item;_siftup(array,0,cmp);return returnitem};heappushpop=function(array,item,cmp){var _ref;if(cmp==null){cmp=defaultCmp}if(array.length&&cmp(array[0],item)<0){_ref=[array[0],item],item=_ref[0],array[0]=_ref[1];_siftup(array,0,cmp)}return item};heapify=function(array,cmp){var i,_i,_j,_len,_ref,_ref1,_results,_results1;if(cmp==null){cmp=defaultCmp}_ref1=function(){_results1=[];for(var _j=0,_ref=floor(array.length/2);0<=_ref?_j<_ref:_j>_ref;0<=_ref?_j++:_j--){_results1.push(_j)}return _results1}.apply(this).reverse();_results=[];for(_i=0,_len=_ref1.length;_i<_len;_i++){i=_ref1[_i];_results.push(_siftup(array,i,cmp))}return _results};updateItem=function(array,item,cmp){var pos;if(cmp==null){cmp=defaultCmp}pos=array.indexOf(item);if(pos===-1){return}_siftdown(array,0,pos,cmp);return _siftup(array,pos,cmp)};nlargest=function(array,n,cmp){var elem,result,_i,_len,_ref;if(cmp==null){cmp=defaultCmp}result=array.slice(0,n);if(!result.length){return result}heapify(result,cmp);_ref=array.slice(n);for(_i=0,_len=_ref.length;_i<_len;_i++){elem=_ref[_i];heappushpop(result,elem,cmp)}return result.sort(cmp).reverse()};nsmallest=function(array,n,cmp){var elem,i,los,result,_i,_j,_len,_ref,_ref1,_results;if(cmp==null){cmp=defaultCmp}if(n*10<=array.length){result=array.slice(0,n).sort(cmp);if(!result.length){return result}los=result[result.length-1];_ref=array.slice(n);for(_i=0,_len=_ref.length;_i<_len;_i++){elem=_ref[_i];if(cmp(elem,los)<0){insort(result,elem,0,null,cmp);result.pop();los=result[result.length-1]}}return result}heapify(array,cmp);_results=[];for(i=_j=0,_ref1=min(n,array.length);0<=_ref1?_j<_ref1:_j>_ref1;i=0<=_ref1?++_j:--_j){_results.push(heappop(array,cmp))}return _results};_siftdown=function(array,startpos,pos,cmp){var newitem,parent,parentpos;if(cmp==null){cmp=defaultCmp}newitem=array[pos];while(pos>startpos){parentpos=pos-1>>1;parent=array[parentpos];if(cmp(newitem,parent)<0){array[pos]=parent;pos=parentpos;continue}break}return array[pos]=newitem};_siftup=function(array,pos,cmp){var childpos,endpos,newitem,rightpos,startpos;if(cmp==null){cmp=defaultCmp}endpos=array.length;startpos=pos;newitem=array[pos];childpos=2*pos+1;while(childpos<endpos){rightpos=childpos+1;if(rightpos<endpos&&!(cmp(array[childpos],array[rightpos])<0)){childpos=rightpos}array[pos]=array[childpos];pos=childpos;childpos=2*pos+1}array[pos]=newitem;return _siftdown(array,startpos,pos,cmp)};Heap=function(){Heap.push=heappush;Heap.pop=heappop;Heap.replace=heapreplace;Heap.pushpop=heappushpop;Heap.heapify=heapify;Heap.updateItem=updateItem;Heap.nlargest=nlargest;Heap.nsmallest=nsmallest;function Heap(cmp){this.cmp=cmp!=null?cmp:defaultCmp;this.nodes=[]}Heap.prototype.push=function(x){return heappush(this.nodes,x,this.cmp)};Heap.prototype.pop=function(){return heappop(this.nodes,this.cmp)};Heap.prototype.peek=function(){return this.nodes[0]};Heap.prototype.contains=function(x){return this.nodes.indexOf(x)!==-1};Heap.prototype.replace=function(x){return heapreplace(this.nodes,x,this.cmp)};Heap.prototype.pushpop=function(x){return heappushpop(this.nodes,x,this.cmp)};Heap.prototype.heapify=function(){return heapify(this.nodes,this.cmp)};Heap.prototype.updateItem=function(x){return updateItem(this.nodes,x,this.cmp)};Heap.prototype.clear=function(){return this.nodes=[]};Heap.prototype.empty=function(){return this.nodes.length===0};Heap.prototype.size=function(){return this.nodes.length};Heap.prototype.clone=function(){var heap;heap=new Heap;heap.nodes=this.nodes.slice(0);return heap};Heap.prototype.toArray=function(){return this.nodes.slice(0)};Heap.prototype.insert=Heap.prototype.push;Heap.prototype.top=Heap.prototype.peek;Heap.prototype.front=Heap.prototype.peek;Heap.prototype.has=Heap.prototype.contains;Heap.prototype.copy=Heap.prototype.clone;return Heap}();module.exports=Heap},{}],113:[function(require,module,exports){"use strict";require("./-preamble");var window=require("./window");var is=require("./is");var Core=require("./core");var extension=require("./extension");var registerJquery=require("./jquery-plugin");var Stylesheet=require("./stylesheet");var Thread=require("./thread");var Fabric=require("./fabric");var cytoscape=function(options){if(options===undefined){options={}}if(is.plainObject(options)){return new Core(options)}else if(is.string(options)){return extension.apply(extension,arguments)}};cytoscape.version=require("./version.json");if(window&&window.jQuery){registerJquery(window.jQuery,cytoscape)}cytoscape.registerJquery=function(jQuery){registerJquery(jQuery,cytoscape)};cytoscape.stylesheet=cytoscape.Stylesheet=Stylesheet;cytoscape.thread=cytoscape.Thread=Thread;cytoscape.fabric=cytoscape.Fabric=Fabric;module.exports=cytoscape},{"./-preamble":32,"./core":68,"./extension":77,"./fabric":111,"./is":114,"./jquery-plugin":115,"./stylesheet":128,"./thread":129,"./version.json":137,"./window":138}],114:[function(require,module,exports){"use strict";var window=require("./window");var navigator=window?window.navigator:null;var document=window?window.document:null;var typeofstr=typeof"";var typeofobj=typeof{};var typeoffn=typeof function(){};var typeofhtmlele=typeof HTMLElement;var instanceStr=function(obj){return obj&&obj.instanceString&&is.fn(obj.instanceString)?obj.instanceString():null};var is={defined:function(obj){return obj!=null},string:function(obj){return obj!=null&&typeof obj==typeofstr},fn:function(obj){return obj!=null&&typeof obj===typeoffn},array:function(obj){return Array.isArray?Array.isArray(obj):obj!=null&&obj instanceof Array},plainObject:function(obj){return obj!=null&&typeof obj===typeofobj&&!is.array(obj)&&obj.constructor===Object},object:function(obj){return obj!=null&&typeof obj===typeofobj},number:function(obj){return obj!=null&&typeof obj===typeof 1&&!isNaN(obj)},integer:function(obj){return is.number(obj)&&Math.floor(obj)===obj},bool:function(obj){return obj!=null&&typeof obj===typeof true},htmlElement:function(obj){if("undefined"===typeofhtmlele){return undefined}else{return null!=obj&&obj instanceof HTMLElement}},elementOrCollection:function(obj){return is.element(obj)||is.collection(obj)},element:function(obj){return instanceStr(obj)==="collection"&&obj._private.single},collection:function(obj){return instanceStr(obj)==="collection"&&!obj._private.single},core:function(obj){return instanceStr(obj)==="core"},style:function(obj){return instanceStr(obj)==="style"},stylesheet:function(obj){return instanceStr(obj)==="stylesheet"},event:function(obj){return instanceStr(obj)==="event"},thread:function(obj){return instanceStr(obj)==="thread"},fabric:function(obj){return instanceStr(obj)==="fabric"},emptyString:function(obj){if(obj===undefined||obj===null){return true}else if(obj===""||obj.match(/^\s+$/)){return true}return false},nonemptyString:function(obj){if(obj&&is.string(obj)&&obj!==""&&!obj.match(/^\s+$/)){return true}return false},domElement:function(obj){if(typeof HTMLElement==="undefined"){return false}else{return obj instanceof HTMLElement}},boundingBox:function(obj){return is.plainObject(obj)&&is.number(obj.x1)&&is.number(obj.x2)&&is.number(obj.y1)&&is.number(obj.y2)},promise:function(obj){return is.object(obj)&&is.fn(obj.then)},touch:function(){return window&&("ontouchstart"in window||window.DocumentTouch&&document instanceof DocumentTouch)},gecko:function(){return window&&(typeof InstallTrigger!=="undefined"||"MozAppearance"in document.documentElement.style)},webkit:function(){return window&&(typeof webkitURL!=="undefined"||"WebkitAppearance"in document.documentElement.style)},chromium:function(){return window&&typeof chrome!=="undefined"},khtml:function(){return navigator&&navigator.vendor.match(/kde/i)},khtmlEtc:function(){return is.khtml()||is.webkit()||is.chromium()},ms:function(){return navigator&&navigator.userAgent.match(/msie|trident|edge/i)},windows:function(){return navigator&&navigator.appVersion.match(/Win/i)},mac:function(){return navigator&&navigator.appVersion.match(/Mac/i)},linux:function(){return navigator&&navigator.appVersion.match(/Linux/i)},unix:function(){return navigator&&navigator.appVersion.match(/X11/i)}};module.exports=is},{"./window":138}],115:[function(require,module,exports){"use strict";var is=require("./is");var cyReg=function($ele){var d=$ele[0]._cyreg=$ele[0]._cyreg||{};return d};var registerJquery=function($,cytoscape){if(!$){return}if($.fn.cytoscape){return}$.fn.cytoscape=function(opts){var $this=$(this);if(opts==="get"){return cyReg($this).cy}else if(is.fn(opts)){var ready=opts;var cy=cyReg($this).cy;if(cy&&cy.isReady()){cy.trigger("ready",[],ready)}else{var data=cyReg($this);var readies=data.readies=data.readies||[];readies.push(ready)}}else if(is.plainObject(opts)){return $this.each(function(){var options=$.extend({},opts,{container:$(this)[0]});cytoscape(options)})}};$.cytoscape=cytoscape;if($.fn.cy==null&&$.cy==null){$.fn.cy=$.fn.cytoscape;$.cy=$.cytoscape}};module.exports=registerJquery},{"./is":114}],116:[function(require,module,exports){"use strict";var math={};math.arePositionsSame=function(p1,p2){return p1.x===p2.x&&p1.y===p2.y};math.copyPosition=function(p){return{x:p.x,y:p.y}};math.array2point=function(arr){return{x:arr[0],y:arr[1]}};math.deg2rad=function(deg){return Math.PI*deg/180};math.log2=Math.log2||function(n){return Math.log(n)/Math.log(2)};math.signum=function(x){if(x>0){return 1}else if(x<0){return-1}else{return 0}};math.dist=function(p1,p2){return Math.sqrt(math.sqdist(p1,p2))};math.sqdist=function(p1,p2){var dx=p2.x-p1.x;var dy=p2.y-p1.y;return dx*dx+dy*dy};math.qbezierAt=function(p0,p1,p2,t){return(1-t)*(1-t)*p0+2*(1-t)*t*p1+t*t*p2};math.qbezierPtAt=function(p0,p1,p2,t){return{x:math.qbezierAt(p0.x,p1.x,p2.x,t),y:math.qbezierAt(p0.y,p1.y,p2.y,t)}};math.lineAt=function(p0,p1,t,d){var vec={x:p1.x-p0.x,y:p1.y-p0.y};var vecDist=math.dist(p0,p1);var normVec={x:vec.x/vecDist,y:vec.y/vecDist};t=t==null?0:t;var d=d!=null?d:t*vecDist;return{x:p0.x+normVec.x*d,y:p0.y+normVec.y*d}};math.lineAtDist=function(p0,p1,d){return math.lineAt(p0,p1,undefined,d)};math.triangleAngle=function(A,B,C){var a=math.dist(B,C);var b=math.dist(A,C);var c=math.dist(A,B);return Math.acos((a*a+b*b-c*c)/(2*a*b))};math.bound=function(min,val,max){return Math.max(min,Math.min(max,val))};math.makeBoundingBox=function(bb){if(bb==null){return{x1:Infinity,y1:Infinity,x2:-Infinity,y2:-Infinity,w:0,h:0}}else if(bb.x1!=null&&bb.y1!=null){if(bb.x2!=null&&bb.y2!=null&&bb.x2>=bb.x1&&bb.y2>=bb.y1){return{x1:bb.x1,y1:bb.y1,x2:bb.x2,y2:bb.y2,w:bb.x2-bb.x1,h:bb.y2-bb.y1}}else if(bb.w!=null&&bb.h!=null&&bb.w>=0&&bb.h>=0){return{x1:bb.x1,y1:bb.y1,x2:bb.x1+bb.w,y2:bb.y1+bb.h,w:bb.w,h:bb.h}}}};math.updateBoundingBox=function(bb1,bb2){bb1.x1=Math.min(bb1.x1,bb2.x1);bb1.x2=Math.max(bb1.x2,bb2.x2);bb1.w=bb1.x2-bb1.x1;bb1.y1=Math.min(bb1.y1,bb2.y1);bb1.y2=Math.max(bb1.y2,bb2.y2);bb1.h=bb1.y2-bb1.y1};math.expandBoundingBox=function(bb,padding){bb.x1-=padding;bb.x2+=padding;bb.y1-=padding;bb.y2+=padding;bb.w=bb.x2-bb.x1;bb.h=bb.y2-bb.y1;return bb};math.boundingBoxesIntersect=function(bb1,bb2){if(bb1.x1>bb2.x2){return false}if(bb2.x1>bb1.x2){return false}if(bb1.x2<bb2.x1){return false}if(bb2.x2<bb1.x1){return false}if(bb1.y2<bb2.y1){return false}if(bb2.y2<bb1.y1){return false}if(bb1.y1>bb2.y2){return false}if(bb2.y1>bb1.y2){return false}return true};math.inBoundingBox=function(bb,x,y){return bb.x1<=x&&x<=bb.x2&&bb.y1<=y&&y<=bb.y2};math.pointInBoundingBox=function(bb,pt){return this.inBoundingBox(bb,pt.x,pt.y)};math.boundingBoxInBoundingBox=function(bb1,bb2){return math.inBoundingBox(bb1,bb2.x1,bb2.y1)&&math.inBoundingBox(bb1,bb2.x2,bb2.y2)};math.roundRectangleIntersectLine=function(x,y,nodeX,nodeY,width,height,padding){var cornerRadius=this.getRoundRectangleRadius(width,height);var halfWidth=width/2;var halfHeight=height/2;var straightLineIntersections;{var topStartX=nodeX-halfWidth+cornerRadius-padding;var topStartY=nodeY-halfHeight-padding;var topEndX=nodeX+halfWidth-cornerRadius+padding;var topEndY=topStartY;straightLineIntersections=this.finiteLinesIntersect(x,y,nodeX,nodeY,topStartX,topStartY,topEndX,topEndY,false);if(straightLineIntersections.length>0){return straightLineIntersections}}{var rightStartX=nodeX+halfWidth+padding;var rightStartY=nodeY-halfHeight+cornerRadius-padding;var rightEndX=rightStartX;var rightEndY=nodeY+halfHeight-cornerRadius+padding;straightLineIntersections=this.finiteLinesIntersect(x,y,nodeX,nodeY,rightStartX,rightStartY,rightEndX,rightEndY,false);if(straightLineIntersections.length>0){return straightLineIntersections}}{var bottomStartX=nodeX-halfWidth+cornerRadius-padding;var bottomStartY=nodeY+halfHeight+padding;var bottomEndX=nodeX+halfWidth-cornerRadius+padding;var bottomEndY=bottomStartY;straightLineIntersections=this.finiteLinesIntersect(x,y,nodeX,nodeY,bottomStartX,bottomStartY,bottomEndX,bottomEndY,false);if(straightLineIntersections.length>0){return straightLineIntersections}}{var leftStartX=nodeX-halfWidth-padding;var leftStartY=nodeY-halfHeight+cornerRadius-padding;var leftEndX=leftStartX;var leftEndY=nodeY+halfHeight-cornerRadius+padding;straightLineIntersections=this.finiteLinesIntersect(x,y,nodeX,nodeY,leftStartX,leftStartY,leftEndX,leftEndY,false);if(straightLineIntersections.length>0){return straightLineIntersections}}var arcIntersections;{var topLeftCenterX=nodeX-halfWidth+cornerRadius;var topLeftCenterY=nodeY-halfHeight+cornerRadius;arcIntersections=this.intersectLineCircle(x,y,nodeX,nodeY,topLeftCenterX,topLeftCenterY,cornerRadius+padding);if(arcIntersections.length>0&&arcIntersections[0]<=topLeftCenterX&&arcIntersections[1]<=topLeftCenterY){return[arcIntersections[0],arcIntersections[1]]}}{var topRightCenterX=nodeX+halfWidth-cornerRadius;var topRightCenterY=nodeY-halfHeight+cornerRadius;arcIntersections=this.intersectLineCircle(x,y,nodeX,nodeY,topRightCenterX,topRightCenterY,cornerRadius+padding);if(arcIntersections.length>0&&arcIntersections[0]>=topRightCenterX&&arcIntersections[1]<=topRightCenterY){return[arcIntersections[0],arcIntersections[1]]}}{var bottomRightCenterX=nodeX+halfWidth-cornerRadius;var bottomRightCenterY=nodeY+halfHeight-cornerRadius;arcIntersections=this.intersectLineCircle(x,y,nodeX,nodeY,bottomRightCenterX,bottomRightCenterY,cornerRadius+padding);if(arcIntersections.length>0&&arcIntersections[0]>=bottomRightCenterX&&arcIntersections[1]>=bottomRightCenterY){return[arcIntersections[0],arcIntersections[1]]}}{var bottomLeftCenterX=nodeX-halfWidth+cornerRadius;var bottomLeftCenterY=nodeY+halfHeight-cornerRadius;arcIntersections=this.intersectLineCircle(x,y,nodeX,nodeY,bottomLeftCenterX,bottomLeftCenterY,cornerRadius+padding);if(arcIntersections.length>0&&arcIntersections[0]<=bottomLeftCenterX&&arcIntersections[1]>=bottomLeftCenterY){return[arcIntersections[0],arcIntersections[1]]}}return[]};math.inLineVicinity=function(x,y,lx1,ly1,lx2,ly2,tolerance){var t=tolerance;var x1=Math.min(lx1,lx2);var x2=Math.max(lx1,lx2);var y1=Math.min(ly1,ly2);var y2=Math.max(ly1,ly2);return x1-t<=x&&x<=x2+t&&y1-t<=y&&y<=y2+t};math.inBezierVicinity=function(x,y,x1,y1,x2,y2,x3,y3,tolerance){var bb={x1:Math.min(x1,x3,x2)-tolerance,x2:Math.max(x1,x3,x2)+tolerance,y1:Math.min(y1,y3,y2)-tolerance,y2:Math.max(y1,y3,y2)+tolerance};if(x<bb.x1||x>bb.x2||y<bb.y1||y>bb.y2){return false}else{return true}};math.solveCubic=function(a,b,c,d,result){b/=a;c/=a;d/=a;var discriminant,q,r,dum1,s,t,term1,r13;q=(3*c-b*b)/9;r=-(27*d)+b*(9*c-2*(b*b));r/=54;discriminant=q*q*q+r*r;result[1]=0;term1=b/3;if(discriminant>0){s=r+Math.sqrt(discriminant);s=s<0?-Math.pow(-s,1/3):Math.pow(s,1/3);t=r-Math.sqrt(discriminant);t=t<0?-Math.pow(-t,1/3):Math.pow(t,1/3);result[0]=-term1+s+t;term1+=(s+t)/2;result[4]=result[2]=-term1;term1=Math.sqrt(3)*(-t+s)/2;result[3]=term1;result[5]=-term1;return}result[5]=result[3]=0;if(discriminant===0){r13=r<0?-Math.pow(-r,1/3):Math.pow(r,1/3);result[0]=-term1+2*r13;result[4]=result[2]=-(r13+term1);return}q=-q;dum1=q*q*q;dum1=Math.acos(r/Math.sqrt(dum1));r13=2*Math.sqrt(q);result[0]=-term1+r13*Math.cos(dum1/3);result[2]=-term1+r13*Math.cos((dum1+2*Math.PI)/3);result[4]=-term1+r13*Math.cos((dum1+4*Math.PI)/3);return};math.sqdistToQuadraticBezier=function(x,y,x1,y1,x2,y2,x3,y3){var a=1*x1*x1-4*x1*x2+2*x1*x3+4*x2*x2-4*x2*x3+x3*x3+y1*y1-4*y1*y2+2*y1*y3+4*y2*y2-4*y2*y3+y3*y3;var b=1*9*x1*x2-3*x1*x1-3*x1*x3-6*x2*x2+3*x2*x3+9*y1*y2-3*y1*y1-3*y1*y3-6*y2*y2+3*y2*y3;var c=1*3*x1*x1-6*x1*x2+x1*x3-x1*x+2*x2*x2+2*x2*x-x3*x+3*y1*y1-6*y1*y2+y1*y3-y1*y+2*y2*y2+2*y2*y-y3*y;var d=1*x1*x2-x1*x1+x1*x-x2*x+y1*y2-y1*y1+y1*y-y2*y;var roots=[];this.solveCubic(a,b,c,d,roots);var zeroThreshold=1e-7;var params=[];for(var index=0;index<6;index+=2){if(Math.abs(roots[index+1])<zeroThreshold&&roots[index]>=0&&roots[index]<=1){params.push(roots[index])}}params.push(1);params.push(0);var minDistanceSquared=-1;var closestParam;var curX,curY,distSquared;for(var i=0;i<params.length;i++){curX=Math.pow(1-params[i],2)*x1+2*(1-params[i])*params[i]*x2+params[i]*params[i]*x3;curY=Math.pow(1-params[i],2)*y1+2*(1-params[i])*params[i]*y2+params[i]*params[i]*y3;distSquared=Math.pow(curX-x,2)+Math.pow(curY-y,2);if(minDistanceSquared>=0){if(distSquared<minDistanceSquared){minDistanceSquared=distSquared;closestParam=params[i]}}else{minDistanceSquared=distSquared;closestParam=params[i]}}return minDistanceSquared};math.sqdistToFiniteLine=function(x,y,x1,y1,x2,y2){var offset=[x-x1,y-y1];var line=[x2-x1,y2-y1];var lineSq=line[0]*line[0]+line[1]*line[1];var hypSq=offset[0]*offset[0]+offset[1]*offset[1];var dotProduct=offset[0]*line[0]+offset[1]*line[1];var adjSq=dotProduct*dotProduct/lineSq;if(dotProduct<0){return hypSq}if(adjSq>lineSq){return(x-x2)*(x-x2)+(y-y2)*(y-y2)}return hypSq-adjSq};math.pointInsidePolygonPoints=function(x,y,points){var x1,y1,x2,y2;var y3;var up=0;var down=0;for(var i=0;i<points.length/2;i++){x1=points[i*2];y1=points[i*2+1];if(i+1<points.length/2){x2=points[(i+1)*2];y2=points[(i+1)*2+1]}else{x2=points[(i+1-points.length/2)*2];y2=points[(i+1-points.length/2)*2+1]}if(x1==x&&x2==x){}else if(x1>=x&&x>=x2||x1<=x&&x<=x2){y3=(x-x1)/(x2-x1)*(y2-y1)+y1;if(y3>y){up++}if(y3<y){down++}}else{continue}}if(up%2===0){return false}else{return true}};math.pointInsidePolygon=function(x,y,basePoints,centerX,centerY,width,height,direction,padding){var transformedPoints=new Array(basePoints.length);var angle;if(direction[0]!=null){angle=Math.atan(direction[1]/direction[0]);if(direction[0]<0){angle=angle+Math.PI/2}else{angle=-angle-Math.PI/2}}else{angle=direction}var cos=Math.cos(-angle);var sin=Math.sin(-angle);for(var i=0;i<transformedPoints.length/2;i++){transformedPoints[i*2]=width/2*(basePoints[i*2]*cos-basePoints[i*2+1]*sin);transformedPoints[i*2+1]=height/2*(basePoints[i*2+1]*cos+basePoints[i*2]*sin);transformedPoints[i*2]+=centerX;transformedPoints[i*2+1]+=centerY}var points;if(padding>0){var expandedLineSet=this.expandPolygon(transformedPoints,-padding);
 
 points=this.joinLines(expandedLineSet)}else{points=transformedPoints}return math.pointInsidePolygonPoints(x,y,points)};math.joinLines=function(lineSet){var vertices=new Array(lineSet.length/2);var currentLineStartX,currentLineStartY,currentLineEndX,currentLineEndY;var nextLineStartX,nextLineStartY,nextLineEndX,nextLineEndY;for(var i=0;i<lineSet.length/4;i++){currentLineStartX=lineSet[i*4];currentLineStartY=lineSet[i*4+1];currentLineEndX=lineSet[i*4+2];currentLineEndY=lineSet[i*4+3];if(i<lineSet.length/4-1){nextLineStartX=lineSet[(i+1)*4];nextLineStartY=lineSet[(i+1)*4+1];nextLineEndX=lineSet[(i+1)*4+2];nextLineEndY=lineSet[(i+1)*4+3]}else{nextLineStartX=lineSet[0];nextLineStartY=lineSet[1];nextLineEndX=lineSet[2];nextLineEndY=lineSet[3]}var intersection=this.finiteLinesIntersect(currentLineStartX,currentLineStartY,currentLineEndX,currentLineEndY,nextLineStartX,nextLineStartY,nextLineEndX,nextLineEndY,true);vertices[i*2]=intersection[0];vertices[i*2+1]=intersection[1]}return vertices};math.expandPolygon=function(points,pad){var expandedLineSet=new Array(points.length*2);var currentPointX,currentPointY,nextPointX,nextPointY;for(var i=0;i<points.length/2;i++){currentPointX=points[i*2];currentPointY=points[i*2+1];if(i<points.length/2-1){nextPointX=points[(i+1)*2];nextPointY=points[(i+1)*2+1]}else{nextPointX=points[0];nextPointY=points[1]}var offsetX=nextPointY-currentPointY;var offsetY=-(nextPointX-currentPointX);var offsetLength=Math.sqrt(offsetX*offsetX+offsetY*offsetY);var normalizedOffsetX=offsetX/offsetLength;var normalizedOffsetY=offsetY/offsetLength;expandedLineSet[i*4]=currentPointX+normalizedOffsetX*pad;expandedLineSet[i*4+1]=currentPointY+normalizedOffsetY*pad;expandedLineSet[i*4+2]=nextPointX+normalizedOffsetX*pad;expandedLineSet[i*4+3]=nextPointY+normalizedOffsetY*pad}return expandedLineSet};math.intersectLineEllipse=function(x,y,centerX,centerY,ellipseWradius,ellipseHradius){var dispX=centerX-x;var dispY=centerY-y;dispX/=ellipseWradius;dispY/=ellipseHradius;var len=Math.sqrt(dispX*dispX+dispY*dispY);var newLength=len-1;if(newLength<0){return[]}var lenProportion=newLength/len;return[(centerX-x)*lenProportion+x,(centerY-y)*lenProportion+y]};math.intersectLineCircle=function(x1,y1,x2,y2,centerX,centerY,radius){var d=[x2-x1,y2-y1];var c=[centerX,centerY];var f=[x1-centerX,y1-centerY];var a=d[0]*d[0]+d[1]*d[1];var b=2*(f[0]*d[0]+f[1]*d[1]);var c=f[0]*f[0]+f[1]*f[1]-radius*radius;var discriminant=b*b-4*a*c;if(discriminant<0){return[]}var t1=(-b+Math.sqrt(discriminant))/(2*a);var t2=(-b-Math.sqrt(discriminant))/(2*a);var tMin=Math.min(t1,t2);var tMax=Math.max(t1,t2);var inRangeParams=[];if(tMin>=0&&tMin<=1){inRangeParams.push(tMin)}if(tMax>=0&&tMax<=1){inRangeParams.push(tMax)}if(inRangeParams.length===0){return[]}var nearIntersectionX=inRangeParams[0]*d[0]+x1;var nearIntersectionY=inRangeParams[0]*d[1]+y1;if(inRangeParams.length>1){if(inRangeParams[0]==inRangeParams[1]){return[nearIntersectionX,nearIntersectionY]}else{var farIntersectionX=inRangeParams[1]*d[0]+x1;var farIntersectionY=inRangeParams[1]*d[1]+y1;return[nearIntersectionX,nearIntersectionY,farIntersectionX,farIntersectionY]}}else{return[nearIntersectionX,nearIntersectionY]}};math.findCircleNearPoint=function(centerX,centerY,radius,farX,farY){var displacementX=farX-centerX;var displacementY=farY-centerY;var distance=Math.sqrt(displacementX*displacementX+displacementY*displacementY);var unitDisplacementX=displacementX/distance;var unitDisplacementY=displacementY/distance;return[centerX+unitDisplacementX*radius,centerY+unitDisplacementY*radius]};math.findMaxSqDistanceToOrigin=function(points){var maxSqDistance=1e-6;var sqDistance;for(var i=0;i<points.length/2;i++){sqDistance=points[i*2]*points[i*2]+points[i*2+1]*points[i*2+1];if(sqDistance>maxSqDistance){maxSqDistance=sqDistance}}return maxSqDistance};math.midOfThree=function(a,b,c){if(b<=a&&a<=c||c<=a&&a<=b){return a}else if(a<=b&&b<=c||c<=b&&b<=a){return b}else{return c}};math.finiteLinesIntersect=function(x1,y1,x2,y2,x3,y3,x4,y4,infiniteLines){var dx13=x1-x3;var dx21=x2-x1;var dx43=x4-x3;var dy13=y1-y3;var dy21=y2-y1;var dy43=y4-y3;var ua_t=dx43*dy13-dy43*dx13;var ub_t=dx21*dy13-dy21*dx13;var u_b=dy43*dx21-dx43*dy21;if(u_b!==0){var ua=ua_t/u_b;var ub=ub_t/u_b;var flptThreshold=.001;var min=0-flptThreshold;var max=1+flptThreshold;if(min<=ua&&ua<=max&&min<=ub&&ub<=max){return[x1+ua*dx21,y1+ua*dy21]}else{if(!infiniteLines){return[]}else{return[x1+ua*dx21,y1+ua*dy21]}}}else{if(ua_t===0||ub_t===0){if(this.midOfThree(x1,x2,x4)===x4){return[x4,y4]}if(this.midOfThree(x1,x2,x3)===x3){return[x3,y3]}if(this.midOfThree(x3,x4,x2)===x2){return[x2,y2]}return[]}else{return[]}}};math.polygonIntersectLine=function(x,y,basePoints,centerX,centerY,width,height,padding){var intersections=[];var intersection;var transformedPoints=new Array(basePoints.length);for(var i=0;i<transformedPoints.length/2;i++){transformedPoints[i*2]=basePoints[i*2]*width+centerX;transformedPoints[i*2+1]=basePoints[i*2+1]*height+centerY}var points;if(padding>0){var expandedLineSet=math.expandPolygon(transformedPoints,-padding);points=math.joinLines(expandedLineSet)}else{points=transformedPoints}var currentX,currentY,nextX,nextY;for(var i=0;i<points.length/2;i++){currentX=points[i*2];currentY=points[i*2+1];if(i<points.length/2-1){nextX=points[(i+1)*2];nextY=points[(i+1)*2+1]}else{nextX=points[0];nextY=points[1]}intersection=this.finiteLinesIntersect(x,y,centerX,centerY,currentX,currentY,nextX,nextY);if(intersection.length!==0){intersections.push(intersection[0],intersection[1])}}return intersections};math.shortenIntersection=function(intersection,offset,amount){var disp=[intersection[0]-offset[0],intersection[1]-offset[1]];var length=Math.sqrt(disp[0]*disp[0]+disp[1]*disp[1]);var lenRatio=(length-amount)/length;if(lenRatio<0){lenRatio=1e-5}return[offset[0]+lenRatio*disp[0],offset[1]+lenRatio*disp[1]]};math.generateUnitNgonPointsFitToSquare=function(sides,rotationRadians){var points=math.generateUnitNgonPoints(sides,rotationRadians);points=math.fitPolygonToSquare(points);return points};math.fitPolygonToSquare=function(points){var x,y;var sides=points.length/2;var minX=Infinity,minY=Infinity,maxX=-Infinity,maxY=-Infinity;for(var i=0;i<sides;i++){x=points[2*i];y=points[2*i+1];minX=Math.min(minX,x);maxX=Math.max(maxX,x);minY=Math.min(minY,y);maxY=Math.max(maxY,y)}var sx=2/(maxX-minX);var sy=2/(maxY-minY);for(var i=0;i<sides;i++){x=points[2*i]=points[2*i]*sx;y=points[2*i+1]=points[2*i+1]*sy;minX=Math.min(minX,x);maxX=Math.max(maxX,x);minY=Math.min(minY,y);maxY=Math.max(maxY,y)}if(minY<-1){for(var i=0;i<sides;i++){y=points[2*i+1]=points[2*i+1]+(-1-minY)}}return points};math.generateUnitNgonPoints=function(sides,rotationRadians){var increment=1/sides*2*Math.PI;var startAngle=sides%2===0?Math.PI/2+increment/2:Math.PI/2;startAngle+=rotationRadians;var points=new Array(sides*2);var currentAngle,x,y;for(var i=0;i<sides;i++){currentAngle=i*increment+startAngle;x=points[2*i]=Math.cos(currentAngle);y=points[2*i+1]=Math.sin(-currentAngle)}return points};math.getRoundRectangleRadius=function(width,height){return Math.min(width/4,height/4,8)};module.exports=math},{}],117:[function(require,module,exports){"use strict";var STATE_PENDING=0;var STATE_FULFILLED=1;var STATE_REJECTED=2;var api=function(executor){if(!(this instanceof api))return new api(executor);this.id="Thenable/1.0.7";this.state=STATE_PENDING;this.fulfillValue=undefined;this.rejectReason=undefined;this.onFulfilled=[];this.onRejected=[];this.proxy={then:this.then.bind(this)};if(typeof executor==="function")executor.call(this,this.fulfill.bind(this),this.reject.bind(this))};api.prototype={fulfill:function(value){return deliver(this,STATE_FULFILLED,"fulfillValue",value)},reject:function(value){return deliver(this,STATE_REJECTED,"rejectReason",value)},then:function(onFulfilled,onRejected){var curr=this;var next=new api;curr.onFulfilled.push(resolver(onFulfilled,next,"fulfill"));curr.onRejected.push(resolver(onRejected,next,"reject"));execute(curr);return next.proxy}};var deliver=function(curr,state,name,value){if(curr.state===STATE_PENDING){curr.state=state;curr[name]=value;execute(curr)}return curr};var execute=function(curr){if(curr.state===STATE_FULFILLED)execute_handlers(curr,"onFulfilled",curr.fulfillValue);else if(curr.state===STATE_REJECTED)execute_handlers(curr,"onRejected",curr.rejectReason)};var execute_handlers=function(curr,name,value){if(curr[name].length===0)return;var handlers=curr[name];curr[name]=[];var func=function(){for(var i=0;i<handlers.length;i++)handlers[i](value)};if(typeof setImmediate==="function")setImmediate(func);else setTimeout(func,0)};var resolver=function(cb,next,method){return function(value){if(typeof cb!=="function")next[method].call(next,value);else{var result;try{result=cb(value)}catch(e){next.reject(e);return}resolve(next,result)}}};var resolve=function(promise,x){if(promise===x||promise.proxy===x){promise.reject(new TypeError("cannot resolve promise with itself"));return}var then;if(typeof x==="object"&&x!==null||typeof x==="function"){try{then=x.then}catch(e){promise.reject(e);return}}if(typeof then==="function"){var resolved=false;try{then.call(x,function(y){if(resolved)return;resolved=true;if(y===x)promise.reject(new TypeError("circular thenable chain"));else resolve(promise,y)},function(r){if(resolved)return;resolved=true;promise.reject(r)})}catch(e){if(!resolved)promise.reject(e)}return}promise.fulfill(x)};api.all=function(ps){return new api(function(resolveAll,rejectAll){var vals=new Array(ps.length);var doneCount=0;var fulfill=function(i,val){vals[i]=val;doneCount++;if(doneCount===ps.length){resolveAll(vals)}};for(var i=0;i<ps.length;i++){(function(i){var p=ps[i];var isPromise=p!=null&&p.then!=null;if(isPromise){p.then(function(val){fulfill(i,val)},function(err){rejectAll(err)})}else{var val=p;fulfill(i,val)}})(i)}})};api.resolve=function(val){return new api(function(resolve,reject){resolve(val)})};api.reject=function(val){return new api(function(resolve,reject){reject(val)})};module.exports=typeof Promise!=="undefined"?Promise:api},{}],118:[function(require,module,exports){"use strict";var is=require("./is");var util=require("./util");var Selector=function(selector){if(!(this instanceof Selector)){return new Selector(selector)}var self=this;self._private={selectorText:null,invalid:true};var newQuery=function(){return{classes:[],colonSelectors:[],data:[],group:null,ids:[],meta:[],collection:null,filter:null,parent:null,ancestor:null,subject:null,child:null,descendant:null}};if(!selector||is.string(selector)&&selector.match(/^\s*$/)){self.length=0}else if(selector==="*"||selector==="edge"||selector==="node"){self[0]=newQuery();self[0].group=selector==="*"?selector:selector+"s";self[0].groupOnly=true;self._private.invalid=false;self._private.selectorText=selector;self.length=1}else if(is.elementOrCollection(selector)){var collection=selector.collection();self[0]=newQuery();self[0].collection=collection;self.length=1}else if(is.fn(selector)){self[0]=newQuery();self[0].filter=selector;self.length=1}else if(is.string(selector)){var currentSubject=null;var tokens={metaChar:"[\\!\\\"\\#\\$\\%\\&\\'\\(\\)\\*\\+\\,\\.\\/\\:\\;\\<\\=\\>\\?\\@\\[\\]\\^\\`\\{\\|\\}\\~]",comparatorOp:"=|\\!=|>|>=|<|<=|\\$=|\\^=|\\*=",boolOp:"\\?|\\!|\\^",string:'"(?:\\\\"|[^"])+"'+"|"+"'(?:\\\\'|[^'])+'",number:util.regex.number,meta:"degree|indegree|outdegree",separator:"\\s*,\\s*",descendant:"\\s+",child:"\\s+>\\s+",subject:"\\$"};tokens.variable="(?:[\\w-]|(?:\\\\"+tokens.metaChar+"))+";tokens.value=tokens.string+"|"+tokens.number;tokens.className=tokens.variable;tokens.id=tokens.variable;var cleanMetaChars=function(str){return str.replace(new RegExp("\\\\("+tokens.metaChar+")","g"),function(match,$1,offset,original){return $1})};var ops=tokens.comparatorOp.split("|");for(var i=0;i<ops.length;i++){var op=ops[i];tokens.comparatorOp+="|@"+op}var ops=tokens.comparatorOp.split("|");for(var i=0;i<ops.length;i++){var op=ops[i];if(op.indexOf("!")>=0){continue}if(op==="="){continue}tokens.comparatorOp+="|\\!"+op}var exprs=[{name:"group",query:true,regex:"(node|edge|\\*)",populate:function(group){this.group=group==="*"?group:group+"s"}},{name:"state",query:true,regex:"(:selected|:unselected|:locked|:unlocked|:visible|:hidden|:transparent|:grabbed|:free|:removed|:inside|:grabbable|:ungrabbable|:animated|:unanimated|:selectable|:unselectable|:orphan|:nonorphan|:parent|:child|:loop|:simple|:active|:inactive|:touch|:backgrounding|:nonbackgrounding)",populate:function(state){this.colonSelectors.push(state)}},{name:"id",query:true,regex:"\\#("+tokens.id+")",populate:function(id){this.ids.push(cleanMetaChars(id))}},{name:"className",query:true,regex:"\\.("+tokens.className+")",populate:function(className){this.classes.push(cleanMetaChars(className))}},{name:"dataExists",query:true,regex:"\\[\\s*("+tokens.variable+")\\s*\\]",populate:function(variable){this.data.push({field:cleanMetaChars(variable)})}},{name:"dataCompare",query:true,regex:"\\[\\s*("+tokens.variable+")\\s*("+tokens.comparatorOp+")\\s*("+tokens.value+")\\s*\\]",populate:function(variable,comparatorOp,value){var valueIsString=new RegExp("^"+tokens.string+"$").exec(value)!=null;if(valueIsString){value=value.substring(1,value.length-1)}else{value=parseFloat(value)}this.data.push({field:cleanMetaChars(variable),operator:comparatorOp,value:value})}},{name:"dataBool",query:true,regex:"\\[\\s*("+tokens.boolOp+")\\s*("+tokens.variable+")\\s*\\]",populate:function(boolOp,variable){this.data.push({field:cleanMetaChars(variable),operator:boolOp})}},{name:"metaCompare",query:true,regex:"\\[\\[\\s*("+tokens.meta+")\\s*("+tokens.comparatorOp+")\\s*("+tokens.number+")\\s*\\]\\]",populate:function(meta,comparatorOp,number){this.meta.push({field:cleanMetaChars(meta),operator:comparatorOp,value:parseFloat(number)})}},{name:"nextQuery",separator:true,regex:tokens.separator,populate:function(){self[++i]=newQuery();currentSubject=null}},{name:"child",separator:true,regex:tokens.child,populate:function(){var childQuery=newQuery();childQuery.parent=this;childQuery.subject=currentSubject;self[i]=childQuery}},{name:"descendant",separator:true,regex:tokens.descendant,populate:function(){var descendantQuery=newQuery();descendantQuery.ancestor=this;descendantQuery.subject=currentSubject;self[i]=descendantQuery}},{name:"subject",modifier:true,regex:tokens.subject,populate:function(){if(currentSubject!=null&&this.subject!=this){util.error("Redefinition of subject in selector `"+selector+"`");return false}currentSubject=this;this.subject=this}}];self._private.selectorText=selector;var remaining=selector;var i=0;var consumeExpr=function(expectation){var expr;var match;var name;for(var j=0;j<exprs.length;j++){var e=exprs[j];var n=e.name;if(is.fn(expectation)&&!expectation(n,e)){continue}var m=remaining.match(new RegExp("^"+e.regex));if(m!=null){match=m;expr=e;name=n;var consumed=m[0];remaining=remaining.substring(consumed.length);break}}return{expr:expr,match:match,name:name}};var consumeWhitespace=function(){var match=remaining.match(/^\s+/);if(match){var consumed=match[0];remaining=remaining.substring(consumed.length)}};self[0]=newQuery();consumeWhitespace();for(;;){var check=consumeExpr();if(check.expr==null){util.error("The selector `"+selector+"`is invalid");return}else{var args=[];for(var j=1;j<check.match.length;j++){args.push(check.match[j])}var ret=check.expr.populate.apply(self[i],args);if(ret===false){return}}if(remaining.match(/^\s*$/)){break}}self.length=i+1;for(var j=0;j<self.length;j++){var query=self[j];if(query.subject!=null){for(;;){if(query.subject==query){break}if(query.parent!=null){var parent=query.parent;var child=query;child.parent=null;parent.child=child;query=parent}else if(query.ancestor!=null){var ancestor=query.ancestor;var descendant=query;descendant.ancestor=null;ancestor.descendant=descendant;query=ancestor}else{util.error("When adjusting references for the selector `"+query+"`, neither parent nor ancestor was found");break}}self[j]=query.subject}}}else{util.error("A selector must be created from a string; found "+selector);return}self._private.invalid=false};var selfn=Selector.prototype;selfn.size=function(){return this.length};selfn.eq=function(i){return this[i]};var queryMatches=function(query,ele){var ele_p=ele._private;if(query.groupOnly){return query.group==="*"||query.group===ele_p.group}if(query.group!=null&&query.group!="*"&&query.group!=ele_p.group){return false}var cy=ele.cy();var allColonSelectorsMatch=true;for(var k=0;k<query.colonSelectors.length;k++){var sel=query.colonSelectors[k];switch(sel){case":selected":allColonSelectorsMatch=ele.selected();break;case":unselected":allColonSelectorsMatch=!ele.selected();break;case":selectable":allColonSelectorsMatch=ele.selectable();break;case":unselectable":allColonSelectorsMatch=!ele.selectable();break;case":locked":allColonSelectorsMatch=ele.locked();break;case":unlocked":allColonSelectorsMatch=!ele.locked();break;case":visible":allColonSelectorsMatch=ele.visible();break;case":hidden":allColonSelectorsMatch=!ele.visible();break;case":transparent":allColonSelectorsMatch=ele.transparent();break;case":grabbed":allColonSelectorsMatch=ele.grabbed();break;case":free":allColonSelectorsMatch=!ele.grabbed();break;case":removed":allColonSelectorsMatch=ele.removed();break;case":inside":allColonSelectorsMatch=!ele.removed();break;case":grabbable":allColonSelectorsMatch=ele.grabbable();break;case":ungrabbable":allColonSelectorsMatch=!ele.grabbable();break;case":animated":allColonSelectorsMatch=ele.animated();break;case":unanimated":allColonSelectorsMatch=!ele.animated();break;case":parent":allColonSelectorsMatch=ele.isNode()&&ele.children().nonempty();break;case":child":case":nonorphan":allColonSelectorsMatch=ele.isNode()&&ele.parent().nonempty();break;case":orphan":allColonSelectorsMatch=ele.isNode()&&ele.parent().empty();break;case":loop":allColonSelectorsMatch=ele.isEdge()&&ele.data("source")===ele.data("target");break;case":simple":allColonSelectorsMatch=ele.isEdge()&&ele.data("source")!==ele.data("target");break;case":active":allColonSelectorsMatch=ele.active();break;case":inactive":allColonSelectorsMatch=!ele.active();break;case":touch":allColonSelectorsMatch=is.touch();break;case":backgrounding":allColonSelectorsMatch=ele.backgrounding();break;case":nonbackgrounding":allColonSelectorsMatch=!ele.backgrounding();break}if(!allColonSelectorsMatch)break}if(!allColonSelectorsMatch)return false;var allIdsMatch=true;for(var k=0;k<query.ids.length;k++){var id=query.ids[k];var actualId=ele_p.data.id;allIdsMatch=allIdsMatch&&id==actualId;if(!allIdsMatch)break}if(!allIdsMatch)return false;var allClassesMatch=true;for(var k=0;k<query.classes.length;k++){var cls=query.classes[k];allClassesMatch=allClassesMatch&&ele.hasClass(cls);if(!allClassesMatch)break}if(!allClassesMatch)return false;var operandsMatch=function(params){var allDataMatches=true;for(var k=0;k<query[params.name].length;k++){var data=query[params.name][k];var operator=data.operator;var value=data.value;var field=data.field;var matches;if(operator!=null&&value!=null){var fieldVal=params.fieldValue(field);var fieldStr=!is.string(fieldVal)&&!is.number(fieldVal)?"":""+fieldVal;var valStr=""+value;var caseInsensitive=false;if(operator.indexOf("@")>=0){fieldStr=fieldStr.toLowerCase();valStr=valStr.toLowerCase();operator=operator.replace("@","");caseInsensitive=true}var notExpr=false;if(operator.indexOf("!")>=0){operator=operator.replace("!","");notExpr=true}if(caseInsensitive){value=valStr.toLowerCase();fieldVal=fieldStr.toLowerCase()}var isIneqCmp=false;switch(operator){case"*=":matches=fieldStr.indexOf(valStr)>=0;break;case"$=":matches=fieldStr.indexOf(valStr,fieldStr.length-valStr.length)>=0;break;case"^=":matches=fieldStr.indexOf(valStr)===0;break;case"=":matches=fieldVal===value;break;case">":isIneqCmp=true;matches=fieldVal>value;break;case">=":isIneqCmp=true;matches=fieldVal>=value;break;case"<":isIneqCmp=true;matches=fieldVal<value;break;case"<=":isIneqCmp=true;matches=fieldVal<=value;break;default:matches=false;break}if(notExpr&&(fieldVal!=null||!isIneqCmp)){matches=!matches}}else if(operator!=null){switch(operator){case"?":matches=params.fieldTruthy(field);break;case"!":matches=!params.fieldTruthy(field);break;case"^":matches=params.fieldUndefined(field);break}}else{matches=!params.fieldUndefined(field)}if(!matches){allDataMatches=false;break}}return allDataMatches};var allDataMatches=operandsMatch({name:"data",fieldValue:function(field){return ele_p.data[field]},fieldUndefined:function(field){return ele_p.data[field]===undefined},fieldTruthy:function(field){if(ele_p.data[field]){return true}return false}});if(!allDataMatches){return false}var allMetaMatches=operandsMatch({name:"meta",fieldValue:function(field){return ele[field]()},fieldUndefined:function(field){return ele[field]()==null},fieldTruthy:function(field){if(ele[field]()){return true}return false}});if(!allMetaMatches){return false}if(query.collection!=null){var matchesAny=query.collection.hasElementWithId(ele.id());if(!matchesAny){return false}}if(query.filter!=null&&ele.collection().filter(query.filter).size()===0){return false}var confirmRelations=function(query,eles){if(query!=null){var matches=false;if(!cy.hasCompoundNodes()){return false}eles=eles();for(var i=0;i<eles.length;i++){if(queryMatches(query,eles[i])){matches=true;break}}return matches}else{return true}};if(!confirmRelations(query.parent,function(){return ele.parent()})){return false}if(!confirmRelations(query.ancestor,function(){return ele.parents()})){return false}if(!confirmRelations(query.child,function(){return ele.children()})){return false}if(!confirmRelations(query.descendant,function(){return ele.descendants()})){return false}return true};selfn.filter=function(collection){var self=this;var cy=collection.cy();if(self._private.invalid){return cy.collection()}var selectorFunction=function(i,element){for(var j=0;j<self.length;j++){var query=self[j];if(queryMatches(query,element)){return true}}return false};if(self._private.selectorText==null){selectorFunction=function(){return true}}var filteredCollection=collection.filter(selectorFunction);return filteredCollection};selfn.matches=function(ele){var self=this;if(self._private.invalid){return false}for(var j=0;j<self.length;j++){var query=self[j];if(queryMatches(query,ele)){return true}}return false};selfn.toString=selfn.selector=function(){var str="";var clean=function(obj){if(obj==null){return""}else{return obj}};var cleanVal=function(val){if(is.string(val)){return'"'+val+'"'}else{return clean(val)}};var space=function(val){return" "+val+" "};var queryToString=function(query){var str="";if(query.subject===query){str+="$"}var group=clean(query.group);str+=group.substring(0,group.length-1);for(var j=0;j<query.data.length;j++){var data=query.data[j];if(data.value){str+="["+data.field+space(clean(data.operator))+cleanVal(data.value)+"]"}else{str+="["+clean(data.operator)+data.field+"]"}}for(var j=0;j<query.meta.length;j++){var meta=query.meta[j];str+="[["+meta.field+space(clean(meta.operator))+cleanVal(meta.value)+"]]"}for(var j=0;j<query.colonSelectors.length;j++){var sel=query.colonSelectors[i];str+=sel}for(var j=0;j<query.ids.length;j++){var sel="#"+query.ids[i];str+=sel}for(var j=0;j<query.classes.length;j++){var sel="."+query.classes[j];str+=sel}if(query.parent!=null){str=queryToString(query.parent)+" > "+str}if(query.ancestor!=null){str=queryToString(query.ancestor)+" "+str}if(query.child!=null){str+=" > "+queryToString(query.child)}if(query.descendant!=null){str+=" "+queryToString(query.descendant)}return str};for(var i=0;i<this.length;i++){var query=this[i];str+=queryToString(query);if(this.length>1&&i<this.length-1){str+=", "}}return str};module.exports=Selector},{"./is":114,"./util":131}],119:[function(require,module,exports){"use strict";var util=require("../util");var is=require("../is");var styfn={};styfn.apply=function(eles){var self=this;var _p=self._private;if(_p.newStyle){_p.contextStyles={};_p.propDiffs={};self.cleanElements(eles,true)}for(var ie=0;ie<eles.length;ie++){var ele=eles[ie];var cxtMeta=self.getContextMeta(ele);var cxtStyle=self.getContextStyle(cxtMeta);var app=self.applyContextStyle(cxtMeta,cxtStyle,ele);self.updateTransitions(ele,app.diffProps);self.updateStyleHints(ele)}_p.newStyle=false};styfn.getPropertiesDiff=function(oldCxtKey,newCxtKey){var self=this;var cache=self._private.propDiffs=self._private.propDiffs||{};var dualCxtKey=oldCxtKey+"-"+newCxtKey;var cachedVal=cache[dualCxtKey];if(cachedVal){return cachedVal}var diffProps=[];var addedProp={};for(var i=0;i<self.length;i++){var cxt=self[i];var oldHasCxt=oldCxtKey[i]==="t";var newHasCxt=newCxtKey[i]==="t";var cxtHasDiffed=oldHasCxt!==newHasCxt;var cxtHasMappedProps=cxt.mappedProperties.length>0;if(cxtHasDiffed||cxtHasMappedProps){var props;if(cxtHasDiffed&&cxtHasMappedProps){props=cxt.properties}else if(cxtHasDiffed){props=cxt.properties}else if(cxtHasMappedProps){props=cxt.mappedProperties}for(var j=0;j<props.length;j++){var prop=props[j];var name=prop.name;var laterCxtOverrides=false;for(var k=i+1;k<self.length;k++){var laterCxt=self[k];var hasLaterCxt=newCxtKey[k]==="t";if(!hasLaterCxt){continue}laterCxtOverrides=laterCxt.properties[prop.name]!=null;if(laterCxtOverrides){break}}if(!addedProp[name]&&!laterCxtOverrides){addedProp[name]=true;diffProps.push(name)}}}}cache[dualCxtKey]=diffProps;return diffProps};styfn.getContextMeta=function(ele){var self=this;var cxtKey="";var diffProps;var prevKey=ele._private.styleCxtKey||"";if(self._private.newStyle){prevKey=""}for(var i=0;i<self.length;i++){var context=self[i];var contextSelectorMatches=context.selector&&context.selector.matches(ele);if(contextSelectorMatches){cxtKey+="t"}else{cxtKey+="f"}}diffProps=self.getPropertiesDiff(prevKey,cxtKey);ele._private.styleCxtKey=cxtKey;return{key:cxtKey,diffPropNames:diffProps}};styfn.getContextStyle=function(cxtMeta){var cxtKey=cxtMeta.key;var self=this;var cxtStyles=this._private.contextStyles=this._private.contextStyles||{};if(cxtStyles[cxtKey]){return cxtStyles[cxtKey]}var style={_private:{key:cxtKey}};for(var i=0;i<self.length;i++){var cxt=self[i];var hasCxt=cxtKey[i]==="t";if(!hasCxt){continue}for(var j=0;j<cxt.properties.length;j++){var prop=cxt.properties[j];var styProp=style[prop.name]=prop;styProp.context=cxt}}cxtStyles[cxtKey]=style;return style};styfn.applyContextStyle=function(cxtMeta,cxtStyle,ele){var self=this;var diffProps=cxtMeta.diffPropNames;var retDiffProps={};for(var i=0;i<diffProps.length;i++){var diffPropName=diffProps[i];var cxtProp=cxtStyle[diffPropName];var eleProp=ele.pstyle(diffPropName);if(!cxtProp){if(!eleProp){continue}else if(eleProp.bypass){cxtProp={name:diffPropName,deleteBypassed:true}}else{cxtProp={name:diffPropName,"delete":true}}}if(eleProp===cxtProp){continue}var retDiffProp=retDiffProps[diffPropName]={prev:eleProp};self.applyParsedProperty(ele,cxtProp);retDiffProp.next=ele.pstyle(diffPropName);if(retDiffProp.next&&retDiffProp.next.bypass){retDiffProp.next=retDiffProp.next.bypassed}}return{diffProps:retDiffProps}};styfn.updateStyleHints=function(ele){var _p=ele._private;var self=this;if(ele.removed()){return}var hasPie=false;if(_p.group==="nodes"){for(var i=1;i<=self.pieBackgroundN;i++){var size=ele.pstyle("pie-"+i+"-background-size").value;if(size>0){hasPie=true;break}}}_p.hasPie=hasPie;var transform=ele.pstyle("text-transform").strValue;var content=ele.pstyle("label").strValue;var srcContent=ele.pstyle("source-label").strValue;var tgtContent=ele.pstyle("target-label").strValue;var fStyle=ele.pstyle("font-style").strValue;var size=ele.pstyle("font-size").pfValue+"px";var family=ele.pstyle("font-family").strValue;var weight=ele.pstyle("font-weight").strValue;var valign=ele.pstyle("text-valign").strValue;var halign=ele.pstyle("text-valign").strValue;var oWidth=ele.pstyle("text-outline-width").pfValue;var wrap=ele.pstyle("text-wrap").strValue;var wrapW=ele.pstyle("text-max-width").pfValue;var labelStyleKey=fStyle+"$"+size+"$"+family+"$"+weight+"$"+transform+"$"+valign+"$"+halign+"$"+oWidth+"$"+wrap+"$"+wrapW;_p.labelStyleKey=labelStyleKey;_p.sourceLabelKey=labelStyleKey+"$"+srcContent;_p.targetLabelKey=labelStyleKey+"$"+tgtContent;_p.labelKey=labelStyleKey+"$"+content;_p.fontKey=fStyle+"$"+weight+"$"+size+"$"+family;_p.styleKey=Date.now()};styfn.applyParsedProperty=function(ele,parsedProp){var self=this;var prop=parsedProp;var style=ele._private.style;var fieldVal,flatProp;var types=self.types;var type=self.properties[prop.name].type;var propIsBypass=prop.bypass;var origProp=style[prop.name];var origPropIsBypass=origProp&&origProp.bypass;var _p=ele._private;if(parsedProp.name==="curve-style"&&parsedProp.value==="haystack"&&ele.isEdge()&&(ele.isLoop()||ele.source().isParent()||ele.target().isParent())){prop=parsedProp=this.parse(parsedProp.name,"bezier",propIsBypass)}if(prop.delete){style[prop.name]=undefined;return true}if(prop.deleteBypassed){if(!origProp){return true}else if(origProp.bypass){origProp.bypassed=undefined;return true}else{return false}}if(prop.deleteBypass){if(!origProp){return true}else if(origProp.bypass){style[prop.name]=origProp.bypassed;return true}else{return false}}var printMappingErr=function(){util.error("Do not assign mappings to elements without corresponding data (e.g. ele `"+ele.id()+"` for property `"+prop.name+"` with data field `"+prop.field+"`); try a `["+prop.field+"]` selector to limit scope to elements with `"+prop.field+"` defined")};switch(prop.mapped){case types.mapData:case types.mapLayoutData:case types.mapScratch:var isLayout=prop.mapped===types.mapLayoutData;var isScratch=prop.mapped===types.mapScratch;var fields=prop.field.split(".");var fieldVal;if(isScratch||isLayout){fieldVal=_p.scratch}else{fieldVal=_p.data}for(var i=0;i<fields.length&&fieldVal;i++){var field=fields[i];fieldVal=fieldVal[field]}var percent;if(!is.number(fieldVal)){percent=0}else{percent=(fieldVal-prop.fieldMin)/(prop.fieldMax-prop.fieldMin)}if(percent<0){percent=0}else if(percent>1){percent=1}if(type.color){var r1=prop.valueMin[0];var r2=prop.valueMax[0];var g1=prop.valueMin[1];var g2=prop.valueMax[1];var b1=prop.valueMin[2];var b2=prop.valueMax[2];var a1=prop.valueMin[3]==null?1:prop.valueMin[3];var a2=prop.valueMax[3]==null?1:prop.valueMax[3];var clr=[Math.round(r1+(r2-r1)*percent),Math.round(g1+(g2-g1)*percent),Math.round(b1+(b2-b1)*percent),Math.round(a1+(a2-a1)*percent)];flatProp={bypass:prop.bypass,name:prop.name,value:clr,strValue:"rgb("+clr[0]+", "+clr[1]+", "+clr[2]+")"}}else if(type.number){var calcValue=prop.valueMin+(prop.valueMax-prop.valueMin)*percent;flatProp=this.parse(prop.name,calcValue,prop.bypass,true)}else{return false}if(!flatProp){flatProp=this.parse(prop.name,origProp.strValue,prop.bypass,true)}if(!flatProp){printMappingErr()}flatProp.mapping=prop;prop=flatProp;break;case types.data:case types.layoutData:case types.scratch:var isLayout=prop.mapped===types.layoutData;var isScratch=prop.mapped===types.scratch;var fields=prop.field.split(".");var fieldVal;if(isScratch||isLayout){fieldVal=_p.scratch}else{fieldVal=_p.data}if(fieldVal){for(var i=0;i<fields.length;i++){var field=fields[i];fieldVal=fieldVal[field]}}flatProp=this.parse(prop.name,fieldVal,prop.bypass,true);if(!flatProp){var flatPropVal=origProp?origProp.strValue:"";flatProp=this.parse(prop.name,flatPropVal,prop.bypass,true)}if(!flatProp){printMappingErr()}flatProp.mapping=prop;prop=flatProp;break;case types.fn:var fn=prop.value;var fnRetVal=fn(ele);flatProp=this.parse(prop.name,fnRetVal,prop.bypass,true);flatProp.mapping=prop;prop=flatProp;break;case undefined:break;default:return false}if(propIsBypass){if(origPropIsBypass){prop.bypassed=origProp.bypassed}else{prop.bypassed=origProp}style[prop.name]=prop}else{if(origPropIsBypass){origProp.bypassed=prop}else{style[prop.name]=prop}}return true};styfn.cleanElements=function(eles,keepBypasses){var self=this;var props=self.properties;for(var i=0;i<eles.length;i++){var ele=eles[i];
 
 if(!keepBypasses){ele._private.style={}}else{var style=ele._private.style;for(var j=0;j<props.length;j++){var prop=props[j];var eleProp=style[prop.name];if(eleProp){if(eleProp.bypass){eleProp.bypassed=null}else{style[prop.name]=null}}}}}};styfn.update=function(){var cy=this._private.cy;var eles=cy.mutableElements();eles.updateStyle()};styfn.updateMappers=function(eles){var self=this;for(var i=0;i<eles.length;i++){var ele=eles[i];var style=ele._private.style;for(var j=0;j<self.properties.length;j++){var prop=self.properties[j];var propInStyle=style[prop.name];if(propInStyle&&propInStyle.mapping){var mapping=propInStyle.mapping;this.applyParsedProperty(ele,mapping)}}this.updateStyleHints(ele)}};styfn.updateTransitions=function(ele,diffProps,isBypass){var self=this;var _p=ele._private;var props=ele.pstyle("transition-property").value;var duration=ele.pstyle("transition-duration").pfValue;var delay=ele.pstyle("transition-delay").pfValue;if(props.length>0&&duration>0){var css={};var anyPrev=false;for(var i=0;i<props.length;i++){var prop=props[i];var styProp=ele.pstyle(prop);var diffProp=diffProps[prop];if(!diffProp){continue}var prevProp=diffProp.prev;var fromProp=prevProp;var toProp=diffProp.next!=null?diffProp.next:styProp;var diff=false;var initVal;var initDt=1e-6;if(!fromProp){continue}if(is.number(fromProp.pfValue)&&is.number(toProp.pfValue)){diff=toProp.pfValue-fromProp.pfValue;initVal=fromProp.pfValue+initDt*diff}else if(is.number(fromProp.value)&&is.number(toProp.value)){diff=toProp.value-fromProp.value;initVal=fromProp.value+initDt*diff}else if(is.array(fromProp.value)&&is.array(toProp.value)){diff=fromProp.value[0]!==toProp.value[0]||fromProp.value[1]!==toProp.value[1]||fromProp.value[2]!==toProp.value[2];initVal=fromProp.strValue}if(diff){css[prop]=toProp.strValue;this.applyBypass(ele,prop,initVal);anyPrev=true}}if(!anyPrev){return}_p.transitioning=true;ele.stop();if(delay>0){ele.delay(delay)}ele.animate({css:css},{duration:duration,easing:ele.pstyle("transition-timing-function").value,queue:false,complete:function(){if(!isBypass){self.removeBypasses(ele,props)}_p.transitioning=false}})}else if(_p.transitioning){ele.stop();this.removeBypasses(ele,props);_p.transitioning=false}};module.exports=styfn},{"../is":114,"../util":131}],120:[function(require,module,exports){"use strict";var is=require("../is");var util=require("../util");var styfn={};styfn.applyBypass=function(eles,name,value,updateTransitions){var self=this;var props=[];var isBypass=true;if(name==="*"||name==="**"){if(value!==undefined){for(var i=0;i<self.properties.length;i++){var prop=self.properties[i];var name=prop.name;var parsedProp=this.parse(name,value,true);if(parsedProp){props.push(parsedProp)}}}}else if(is.string(name)){var parsedProp=this.parse(name,value,true);if(parsedProp){props.push(parsedProp)}}else if(is.plainObject(name)){var specifiedProps=name;updateTransitions=value;for(var i=0;i<self.properties.length;i++){var prop=self.properties[i];var name=prop.name;var value=specifiedProps[name];if(value===undefined){value=specifiedProps[util.dash2camel(name)]}if(value!==undefined){var parsedProp=this.parse(name,value,true);if(parsedProp){props.push(parsedProp)}}}}else{return false}if(props.length===0){return false}var ret=false;for(var i=0;i<eles.length;i++){var ele=eles[i];var diffProps={};var diffProp;for(var j=0;j<props.length;j++){var prop=props[j];if(updateTransitions){var prevProp=ele.pstyle(prop.name);diffProp=diffProps[prop.name]={prev:prevProp}}ret=this.applyParsedProperty(ele,prop)||ret;if(updateTransitions){diffProp.next=ele.pstyle(prop.name)}}if(ret){this.updateStyleHints(ele)}if(updateTransitions){this.updateTransitions(ele,diffProps,isBypass)}}return ret};styfn.overrideBypass=function(eles,name,value){name=util.camel2dash(name);for(var i=0;i<eles.length;i++){var ele=eles[i];var prop=ele._private.style[name];var type=this.properties[name].type;var isColor=type.color;var isMulti=type.mutiple;if(!prop||!prop.bypass){this.applyBypass(ele,name,value);continue}prop.value=value;if(prop.pfValue!=null){prop.pfValue=value}if(isColor){prop.strValue="rgb("+value.join(",")+")"}else if(isMulti){prop.strValue=value.join(" ")}else{prop.strValue=""+value}}};styfn.removeAllBypasses=function(eles,updateTransitions){return this.removeBypasses(eles,this.propertyNames,updateTransitions)};styfn.removeBypasses=function(eles,props,updateTransitions){var isBypass=true;for(var j=0;j<eles.length;j++){var ele=eles[j];var diffProps={};for(var i=0;i<props.length;i++){var name=props[i];var prop=this.properties[name];var prevProp=ele.pstyle(prop.name);if(!prevProp||!prevProp.bypass){continue}var value="";var parsedProp=this.parse(name,value,true);var diffProp=diffProps[prop.name]={prev:prevProp};this.applyParsedProperty(ele,parsedProp);diffProp.next=ele.pstyle(prop.name)}this.updateStyleHints(ele);if(updateTransitions){this.updateTransitions(ele,diffProps,isBypass)}}};module.exports=styfn},{"../is":114,"../util":131}],121:[function(require,module,exports){"use strict";var window=require("../window");var styfn={};styfn.getEmSizeInPixels=function(){var px=this.containerCss("font-size");if(px!=null){return parseFloat(px)}else{return 1}};styfn.containerCss=function(propName){var cy=this._private.cy;var domElement=cy.container();if(window&&domElement&&window.getComputedStyle){return window.getComputedStyle(domElement).getPropertyValue(propName)}};module.exports=styfn},{"../window":138}],122:[function(require,module,exports){"use strict";var util=require("../util");var is=require("../is");var styfn={};styfn.getRenderedStyle=function(ele){return this.getRawStyle(ele,true)};styfn.getRawStyle=function(ele,isRenderedVal){var self=this;var ele=ele[0];if(ele){var rstyle={};for(var i=0;i<self.properties.length;i++){var prop=self.properties[i];var val=self.getStylePropertyValue(ele,prop.name,isRenderedVal);if(val){rstyle[prop.name]=val;rstyle[util.dash2camel(prop.name)]=val}}return rstyle}};styfn.getStylePropertyValue=function(ele,propName,isRenderedVal){var self=this;var ele=ele[0];if(ele){var prop=self.properties[propName];var type=prop.type;var styleProp=ele.pstyle(prop.name);var zoom=ele.cy().zoom();if(styleProp){var units=styleProp.units?type.implicitUnits||"px":null;var val=units?[].concat(styleProp.pfValue).map(function(pfValue){return pfValue*(isRenderedVal?zoom:1)+units}).join(" "):styleProp.strValue;return val}}};styfn.getAnimationStartStyle=function(ele,aniProps){var rstyle={};for(var i=0;i<aniProps.length;i++){var aniProp=aniProps[i];var name=aniProp.name;var styleProp=ele.pstyle(name);if(styleProp!==undefined){if(is.plainObject(styleProp)){styleProp=this.parse(name,styleProp.strValue)}else{styleProp=this.parse(name,styleProp)}}if(styleProp){rstyle[name]=styleProp}}return rstyle};styfn.getPropsList=function(propsObj){var self=this;var rstyle=[];var style=propsObj;var props=self.properties;if(style){var names=Object.keys(style);for(var i=0;i<names.length;i++){var name=names[i];var val=style[name];var prop=props[name]||props[util.camel2dash(name)];var styleProp=this.parse(prop.name,val);rstyle.push(styleProp)}}return rstyle};module.exports=styfn},{"../is":114,"../util":131}],123:[function(require,module,exports){"use strict";var is=require("../is");var util=require("../util");var Selector=require("../selector");var Style=function(cy){if(!(this instanceof Style)){return new Style(cy)}if(!is.core(cy)){util.error("A style must have a core reference");return}this._private={cy:cy,coreStyle:{}};this.length=0;this.resetToDefault()};var styfn=Style.prototype;styfn.instanceString=function(){return"style"};styfn.clear=function(){for(var i=0;i<this.length;i++){this[i]=undefined}this.length=0;var _p=this._private;_p.newStyle=true;return this};styfn.resetToDefault=function(){this.clear();this.addDefaultStylesheet();return this};styfn.core=function(){return this._private.coreStyle};styfn.selector=function(selectorStr){var selector=selectorStr==="core"?null:new Selector(selectorStr);var i=this.length++;this[i]={selector:selector,properties:[],mappedProperties:[],index:i};return this};styfn.css=function(){var self=this;var args=arguments;switch(args.length){case 1:var map=args[0];for(var i=0;i<self.properties.length;i++){var prop=self.properties[i];var mapVal=map[prop.name];if(mapVal===undefined){mapVal=map[util.dash2camel(prop.name)]}if(mapVal!==undefined){this.cssRule(prop.name,mapVal)}}break;case 2:this.cssRule(args[0],args[1]);break;default:break}return this};styfn.style=styfn.css;styfn.cssRule=function(name,value){var property=this.parse(name,value);if(property){var i=this.length-1;this[i].properties.push(property);this[i].properties[property.name]=property;if(property.name.match(/pie-(\d+)-background-size/)&&property.value){this._private.hasPie=true}if(property.mapped){this[i].mappedProperties.push(property)}var currentSelectorIsCore=!this[i].selector;if(currentSelectorIsCore){this._private.coreStyle[property.name]=property}}return this};Style.fromJson=function(cy,json){var style=new Style(cy);style.fromJson(json);return style};Style.fromString=function(cy,string){return new Style(cy).fromString(string)};[require("./apply"),require("./bypass"),require("./container"),require("./get-for-ele"),require("./json"),require("./string-sheet"),require("./properties"),require("./parse")].forEach(function(props){util.extend(styfn,props)});Style.types=styfn.types;Style.properties=styfn.properties;module.exports=Style},{"../is":114,"../selector":118,"../util":131,"./apply":119,"./bypass":120,"./container":121,"./get-for-ele":122,"./json":124,"./parse":125,"./properties":126,"./string-sheet":127}],124:[function(require,module,exports){"use strict";var styfn={};styfn.applyFromJson=function(json){var style=this;for(var i=0;i<json.length;i++){var context=json[i];var selector=context.selector;var props=context.style||context.css;var names=Object.keys(props);style.selector(selector);for(var j=0;j<names.length;j++){var name=names[j];var value=props[name];style.css(name,value)}}return style};styfn.fromJson=function(json){var style=this;style.resetToDefault();style.applyFromJson(json);return style};styfn.json=function(){var json=[];for(var i=this.defaultLength;i<this.length;i++){var cxt=this[i];var selector=cxt.selector;var props=cxt.properties;var css={};for(var j=0;j<props.length;j++){var prop=props[j];css[prop.name]=prop.strValue}json.push({selector:!selector?"core":selector.toString(),style:css})}return json};module.exports=styfn},{}],125:[function(require,module,exports){"use strict";var util=require("../util");var is=require("../is");var math=require("../math");var styfn={};styfn.parse=function(name,value,propIsBypass,propIsFlat){var self=this;if(is.fn(value)){return self.parseImpl(name,value,propIsBypass,propIsFlat)}var argHash=[name,value,propIsBypass,propIsFlat].join("$");var propCache=self.propCache=self.propCache||{};var ret;if(!(ret=propCache[argHash])){ret=propCache[argHash]=self.parseImpl(name,value,propIsBypass,propIsFlat)}ret=util.copy(ret);if(ret){ret.value=util.copy(ret.value)}return ret};var parseImpl=function(name,value,propIsBypass,propIsFlat){var self=this;name=util.camel2dash(name);var property=self.properties[name];var passedValue=value;var types=self.types;if(!property){return null}if(value===undefined||value===null){return null}if(property.alias){property=property.pointsTo;name=property.name}var valueIsString=is.string(value);if(valueIsString){value=value.trim()}var type=property.type;if(!type){return null}if(propIsBypass&&(value===""||value===null)){return{name:name,value:value,bypass:true,deleteBypass:true}}if(is.fn(value)){return{name:name,value:value,strValue:"fn",mapped:types.fn,bypass:propIsBypass}}var data,mapData,layoutData,mapLayoutData,scratch,mapScratch;if(!valueIsString||propIsFlat){}else if((data=new RegExp(types.data.regex).exec(value))||(layoutData=new RegExp(types.layoutData.regex).exec(value))||(scratch=new RegExp(types.scratch.regex).exec(value))){if(propIsBypass){return false}var mapped;if(data){mapped=types.data}else if(layoutData){mapped=types.layoutData}else{mapped=types.scratch}data=data||layoutData||scratch;return{name:name,value:data,strValue:""+value,mapped:mapped,field:data[1],bypass:propIsBypass}}else if((mapData=new RegExp(types.mapData.regex).exec(value))||(mapLayoutData=new RegExp(types.mapLayoutData.regex).exec(value))||(mapScratch=new RegExp(types.mapScratch.regex).exec(value))){if(propIsBypass){return false}if(type.multiple){return false}var mapped;if(mapData){mapped=types.mapData}else if(mapLayoutData){mapped=types.mapLayoutData}else{mapped=types.mapScratch}mapData=mapData||mapLayoutData||mapScratch;if(!(type.color||type.number)){return false}var valueMin=this.parse(name,mapData[4]);if(!valueMin||valueMin.mapped){return false}var valueMax=this.parse(name,mapData[5]);if(!valueMax||valueMax.mapped){return false}if(valueMin.value===valueMax.value){return false}else if(type.color){var c1=valueMin.value;var c2=valueMax.value;var same=c1[0]===c2[0]&&c1[1]===c2[1]&&c1[2]===c2[2]&&(c1[3]===c2[3]||(c1[3]==null||c1[3]===1)&&(c2[3]==null||c2[3]===1));if(same){return false}}return{name:name,value:mapData,strValue:""+value,mapped:mapped,field:mapData[1],fieldMin:parseFloat(mapData[2]),fieldMax:parseFloat(mapData[3]),valueMin:valueMin.value,valueMax:valueMax.value,bypass:propIsBypass}}if(type.multiple&&propIsFlat!=="multiple"){var vals;if(valueIsString){vals=value.split(/\s+/)}else if(is.array(value)){vals=value}else{vals=[value]}if(type.evenMultiple&&vals.length%2!==0){return null}var valArr=vals.map(function(v){var p=self.parse(name,v,propIsBypass,"multiple");if(p.pfValue!=null){return p.pfValue}else{return p.value}});return{name:name,value:valArr,pfValue:valArr,strValue:valArr.join(" "),bypass:propIsBypass,units:type.number&&!type.unitless?type.implicitUnits||"px":undefined}}var checkEnums=function(){for(var i=0;i<type.enums.length;i++){var en=type.enums[i];if(en===value){return{name:name,value:value,strValue:""+value,bypass:propIsBypass}}}return null};if(type.number){var units;var implicitUnits="px";if(type.units){units=type.units}if(type.implicitUnits){implicitUnits=type.implicitUnits}if(!type.unitless){if(valueIsString){var unitsRegex="px|em"+(type.allowPercent?"|\\%":"");if(units){unitsRegex=units}var match=value.match("^("+util.regex.number+")("+unitsRegex+")?"+"$");if(match){value=match[1];units=match[2]||implicitUnits}}else if(!units||type.implicitUnits){units=implicitUnits}}value=parseFloat(value);if(isNaN(value)&&type.enums===undefined){return null}if(isNaN(value)&&type.enums!==undefined){value=passedValue;return checkEnums()}if(type.integer&&!is.integer(value)){return null}if(type.min!==undefined&&value<type.min||type.max!==undefined&&value>type.max){return null}var ret={name:name,value:value,strValue:""+value+(units?units:""),units:units,bypass:propIsBypass};if(type.unitless||units!=="px"&&units!=="em"){ret.pfValue=value}else{ret.pfValue=units==="px"||!units?value:this.getEmSizeInPixels()*value}if(units==="ms"||units==="s"){ret.pfValue=units==="ms"?value:1e3*value}if(units==="deg"||units==="rad"){ret.pfValue=units==="rad"?value:math.deg2rad(value)}return ret}else if(type.propList){var props=[];var propsStr=""+value;if(propsStr==="none"){}else{var propsSplit=propsStr.split(",");for(var i=0;i<propsSplit.length;i++){var propName=propsSplit[i].trim();if(self.properties[propName]){props.push(propName)}}if(props.length===0){return null}}return{name:name,value:props,strValue:props.length===0?"none":props.join(", "),bypass:propIsBypass}}else if(type.color){var tuple=util.color2tuple(value);if(!tuple){return null}return{name:name,value:tuple,strValue:""+value,bypass:propIsBypass,roundValue:true}}else if(type.regex||type.regexes){if(type.enums){var enumProp=checkEnums();if(enumProp){return enumProp}}var regexes=type.regexes?type.regexes:[type.regex];for(var i=0;i<regexes.length;i++){var regex=new RegExp(regexes[i]);var m=regex.exec(value);if(m){return{name:name,value:m,strValue:""+value,bypass:propIsBypass}}}return null}else if(type.string){return{name:name,value:value,strValue:""+value,bypass:propIsBypass}}else if(type.enums){return checkEnums()}else{return null}};styfn.parseImpl=parseImpl;module.exports=styfn},{"../is":114,"../math":116,"../util":131}],126:[function(require,module,exports){"use strict";var util=require("../util");var styfn={};(function(){var number=util.regex.number;var rgba=util.regex.rgbaNoBackRefs;var hsla=util.regex.hslaNoBackRefs;var hex3=util.regex.hex3;var hex6=util.regex.hex6;var data=function(prefix){return"^"+prefix+"\\s*\\(\\s*([\\w\\.]+)\\s*\\)$"};var mapData=function(prefix){var mapArg=number+"|\\w+|"+rgba+"|"+hsla+"|"+hex3+"|"+hex6;return"^"+prefix+"\\s*\\(([\\w\\.]+)\\s*\\,\\s*("+number+")\\s*\\,\\s*("+number+")\\s*,\\s*("+mapArg+")\\s*\\,\\s*("+mapArg+")\\)$"};styfn.types={time:{number:true,min:0,units:"s|ms",implicitUnits:"ms"},percent:{number:true,min:0,max:100,units:"%",implicitUnits:"%"},zeroOneNumber:{number:true,min:0,max:1,unitless:true},nOneOneNumber:{number:true,min:-1,max:1,unitless:true},nonNegativeInt:{number:true,min:0,integer:true,unitless:true},position:{enums:["parent","origin"]},nodeSize:{number:true,min:0,enums:["label"]},number:{number:true,unitless:true},numbers:{number:true,unitless:true,multiple:true},size:{number:true,min:0},bidirectionalSize:{number:true},bidirectionalSizes:{number:true,multiple:true},bgSize:{number:true,min:0,allowPercent:true},bgWH:{number:true,min:0,allowPercent:true,enums:["auto"]},bgPos:{number:true,allowPercent:true},bgRepeat:{enums:["repeat","repeat-x","repeat-y","no-repeat"]},bgFit:{enums:["none","contain","cover"]},bgClip:{enums:["none","node"]},color:{color:true},bool:{enums:["yes","no"]},lineStyle:{enums:["solid","dotted","dashed"]},borderStyle:{enums:["solid","dotted","dashed","double"]},curveStyle:{enums:["bezier","unbundled-bezier","haystack","segments"]},fontFamily:{regex:'^([\\w- \\"]+(?:\\s*,\\s*[\\w- \\"]+)*)$'},fontVariant:{enums:["small-caps","normal"]},fontStyle:{enums:["italic","normal","oblique"]},fontWeight:{enums:["normal","bold","bolder","lighter","100","200","300","400","500","600","800","900",100,200,300,400,500,600,700,800,900]},textDecoration:{enums:["none","underline","overline","line-through"]},textTransform:{enums:["none","uppercase","lowercase"]},textWrap:{enums:["none","wrap"]},textBackgroundShape:{enums:["rectangle","roundrectangle"]},nodeShape:{enums:["rectangle","roundrectangle","ellipse","triangle","square","pentagon","hexagon","heptagon","octagon","star","diamond","vee","rhomboid","polygon"]},compoundIncludeLabels:{enums:["include","exclude"]},arrowShape:{enums:["tee","triangle","triangle-tee","triangle-backcurve","half-triangle-overshot","vee","square","circle","diamond","none"]},arrowFill:{enums:["filled","hollow"]},display:{enums:["element","none"]},visibility:{enums:["hidden","visible"]},valign:{enums:["top","center","bottom"]},halign:{enums:["left","center","right"]},text:{string:true},data:{mapping:true,regex:data("data")},layoutData:{mapping:true,regex:data("layoutData")},scratch:{mapping:true,regex:data("scratch")},mapData:{mapping:true,regex:mapData("mapData")},mapLayoutData:{mapping:true,regex:mapData("mapLayoutData")},mapScratch:{mapping:true,regex:mapData("mapScratch")},fn:{mapping:true,fn:true},url:{regex:"url\\s*\\(\\s*['\"]?(.+?)['\"]?\\s*\\)|none|(.+)$"},propList:{propList:true},angle:{number:true,units:"deg|rad",implicitUnits:"rad"},textRotation:{number:true,units:"deg|rad",implicitUnits:"rad",enums:["none","autorotate"]},polygonPointList:{number:true,multiple:true,evenMultiple:true,min:-1,max:1,unitless:true},edgeDistances:{enums:["intersection","node-position"]},easing:{regexes:["^(spring)\\s*\\(\\s*("+number+")\\s*,\\s*("+number+")\\s*\\)$","^(cubic-bezier)\\s*\\(\\s*("+number+")\\s*,\\s*("+number+")\\s*,\\s*("+number+")\\s*,\\s*("+number+")\\s*\\)$"],enums:["linear","ease","ease-in","ease-out","ease-in-out","ease-in-sine","ease-out-sine","ease-in-out-sine","ease-in-quad","ease-out-quad","ease-in-out-quad","ease-in-cubic","ease-out-cubic","ease-in-out-cubic","ease-in-quart","ease-out-quart","ease-in-out-quart","ease-in-quint","ease-out-quint","ease-in-out-quint","ease-in-expo","ease-out-expo","ease-in-out-expo","ease-in-circ","ease-out-circ","ease-in-out-circ"]}};var t=styfn.types;var props=styfn.properties=[{name:"label",type:t.text},{name:"text-rotation",type:t.textRotation},{name:"text-margin-x",type:t.bidirectionalSize},{name:"text-margin-y",type:t.bidirectionalSize},{name:"source-label",type:t.text},{name:"source-text-rotation",type:t.textRotation},{name:"source-text-margin-x",type:t.bidirectionalSize},{name:"source-text-margin-y",type:t.bidirectionalSize},{name:"source-text-offset",type:t.size},{name:"target-label",type:t.text},{name:"target-text-rotation",type:t.textRotation},{name:"target-text-margin-x",type:t.bidirectionalSize},{name:"target-text-margin-y",type:t.bidirectionalSize},{name:"target-text-offset",type:t.size},{name:"text-valign",type:t.valign},{name:"text-halign",type:t.halign},{name:"color",type:t.color},{name:"text-outline-color",type:t.color},{name:"text-outline-width",type:t.size},{name:"text-outline-opacity",type:t.zeroOneNumber},{name:"text-opacity",type:t.zeroOneNumber},{name:"text-background-color",type:t.color},{name:"text-background-margin",type:t.size},{name:"text-background-opacity",type:t.zeroOneNumber},{name:"text-border-opacity",type:t.zeroOneNumber},{name:"text-border-color",type:t.color},{name:"text-border-width",type:t.size},{name:"text-border-style",type:t.borderStyle},{name:"text-background-shape",type:t.textBackgroundShape},{name:"text-transform",type:t.textTransform},{name:"text-wrap",type:t.textWrap},{name:"text-max-width",type:t.size},{name:"text-events",type:t.bool},{name:"font-family",type:t.fontFamily},{name:"font-style",type:t.fontStyle},{name:"font-weight",type:t.fontWeight},{name:"font-size",type:t.size},{name:"min-zoomed-font-size",type:t.size},{name:"events",type:t.bool},{name:"display",type:t.display},{name:"visibility",type:t.visibility},{name:"opacity",type:t.zeroOneNumber},{name:"z-index",type:t.nonNegativeInt},{name:"overlay-padding",type:t.size},{name:"overlay-color",type:t.color},{name:"overlay-opacity",type:t.zeroOneNumber},{name:"shadow-blur",type:t.size},{name:"shadow-color",type:t.color},{name:"shadow-opacity",type:t.zeroOneNumber},{name:"shadow-offset-x",type:t.bidirectionalSize},{name:"shadow-offset-y",type:t.bidirectionalSize},{name:"text-shadow-blur",type:t.size},{name:"text-shadow-color",type:t.color},{name:"text-shadow-opacity",type:t.zeroOneNumber},{name:"text-shadow-offset-x",type:t.bidirectionalSize},{name:"text-shadow-offset-y",type:t.bidirectionalSize},{name:"transition-property",type:t.propList},{name:"transition-duration",type:t.time},{name:"transition-delay",type:t.time},{name:"transition-timing-function",type:t.easing},{name:"height",type:t.nodeSize},{name:"width",type:t.nodeSize},{name:"shape",type:t.nodeShape},{name:"shape-polygon-points",type:t.polygonPointList},{name:"background-color",type:t.color},{name:"background-opacity",type:t.zeroOneNumber},{name:"background-blacken",type:t.nOneOneNumber},{name:"padding-left",type:t.size},{name:"padding-right",type:t.size},{name:"padding-top",type:t.size},{name:"padding-bottom",type:t.size},{name:"border-color",type:t.color},{name:"border-opacity",type:t.zeroOneNumber},{name:"border-width",type:t.size},{name:"border-style",type:t.borderStyle},{name:"background-image",type:t.url},{name:"background-image-opacity",type:t.zeroOneNumber},{name:"background-position-x",type:t.bgPos},{name:"background-position-y",type:t.bgPos},{name:"background-repeat",type:t.bgRepeat},{name:"background-fit",type:t.bgFit},{name:"background-clip",type:t.bgClip},{name:"background-width",type:t.bgWH},{name:"background-height",type:t.bgWH},{name:"position",type:t.position},{name:"compound-sizing-wrt-labels",type:t.compoundIncludeLabels},{name:"line-style",type:t.lineStyle},{name:"line-color",type:t.color},{name:"curve-style",type:t.curveStyle},{name:"haystack-radius",type:t.zeroOneNumber},{name:"control-point-step-size",type:t.size},{name:"control-point-distances",type:t.bidirectionalSizes},{name:"control-point-weights",type:t.numbers},{name:"segment-distances",type:t.bidirectionalSizes},{name:"segment-weights",type:t.numbers},{name:"edge-distances",type:t.edgeDistances},{name:"selection-box-color",type:t.color},{name:"selection-box-opacity",type:t.zeroOneNumber},{name:"selection-box-border-color",type:t.color},{name:"selection-box-border-width",type:t.size},{name:"active-bg-color",type:t.color},{name:"active-bg-opacity",type:t.zeroOneNumber},{name:"active-bg-size",type:t.size},{name:"outside-texture-bg-color",type:t.color},{name:"outside-texture-bg-opacity",type:t.zeroOneNumber}];var aliases=styfn.aliases=[{name:"content",pointsTo:"label"},{name:"control-point-distance",pointsTo:"control-point-distances"},{name:"control-point-weight",pointsTo:"control-point-weights"},{name:"edge-text-rotation",pointsTo:"text-rotation"}];styfn.pieBackgroundN=16;props.push({name:"pie-size",type:t.bgSize});for(var i=1;i<=styfn.pieBackgroundN;i++){props.push({name:"pie-"+i+"-background-color",type:t.color});props.push({name:"pie-"+i+"-background-size",type:t.percent});props.push({name:"pie-"+i+"-background-opacity",type:t.zeroOneNumber})}var arrowPrefixes=styfn.arrowPrefixes=["source","mid-source","target","mid-target"];[{name:"arrow-shape",type:t.arrowShape},{name:"arrow-color",type:t.color},{name:"arrow-fill",type:t.arrowFill}].forEach(function(prop){arrowPrefixes.forEach(function(prefix){var name=prefix+"-"+prop.name;var type=prop.type;props.push({name:name,type:type})})},{});styfn.propertyNames=props.map(function(p){return p.name});for(var i=0;i<props.length;i++){var prop=props[i];props[prop.name]=prop}for(var i=0;i<aliases.length;i++){var alias=aliases[i];var pointsToProp=props[alias.pointsTo];var aliasProp={name:alias.name,alias:true,pointsTo:pointsToProp};props.push(aliasProp);props[alias.name]=aliasProp}})();styfn.getDefaultProperty=function(name){return this.getDefaultProperties()[name]};styfn.getDefaultProperties=util.memoize(function(){var rawProps=util.extend({events:"yes","text-events":"no","text-valign":"top","text-halign":"center",color:"#000","text-outline-color":"#000","text-outline-width":0,"text-outline-opacity":1,"text-opacity":1,"text-decoration":"none","text-transform":"none","text-wrap":"none","text-max-width":9999,"text-background-color":"#000","text-background-opacity":0,"text-background-margin":0,"text-border-opacity":0,"text-border-width":0,"text-border-style":"solid","text-border-color":"#000","text-background-shape":"rectangle","font-family":"Helvetica Neue, Helvetica, sans-serif","font-style":"normal","font-weight":"normal","font-size":16,"min-zoomed-font-size":0,"text-rotation":"none","source-text-rotation":"none","target-text-rotation":"none",visibility:"visible",display:"element",opacity:1,"z-index":0,label:"","text-margin-x":0,"text-margin-y":0,"source-label":"","source-text-offset":0,"source-text-margin-x":0,"source-text-margin-y":0,"target-label":"","target-text-offset":0,"target-text-margin-x":0,"target-text-margin-y":0,"overlay-opacity":0,"overlay-color":"#000","overlay-padding":10,"shadow-opacity":0,"shadow-color":"#000","shadow-blur":10,"shadow-offset-x":0,"shadow-offset-y":0,"text-shadow-opacity":0,"text-shadow-color":"#000","text-shadow-blur":5,"text-shadow-offset-x":0,"text-shadow-offset-y":0,"transition-property":"none","transition-duration":0,"transition-delay":0,"transition-timing-function":"linear","background-blacken":0,"background-color":"#999","background-opacity":1,"background-image":"none","background-image-opacity":1,"background-position-x":"50%","background-position-y":"50%","background-repeat":"no-repeat","background-fit":"none","background-clip":"node","background-width":"auto","background-height":"auto","border-color":"#000","border-opacity":1,"border-width":0,"border-style":"solid",height:30,width:30,shape:"ellipse","shape-polygon-points":"-1, -1,   1, -1,   1, 1,   -1, 1","padding-top":0,"padding-bottom":0,"padding-left":0,"padding-right":0,position:"origin","compound-sizing-wrt-labels":"include"},{"pie-size":"100%"},[{name:"pie-{{i}}-background-color",value:"black"},{name:"pie-{{i}}-background-size",value:"0%"},{name:"pie-{{i}}-background-opacity",value:1}].reduce(function(css,prop){for(var i=1;i<=styfn.pieBackgroundN;i++){var name=prop.name.replace("{{i}}",i);var val=prop.value;css[name]=val}return css},{}),{"line-style":"solid","line-color":"#999","control-point-step-size":40,"control-point-weights":.5,"segment-weights":.5,"segment-distances":20,"edge-distances":"intersection","curve-style":"bezier","haystack-radius":0},[{name:"arrow-shape",value:"none"},{name:"arrow-color",value:"#999"},{name:"arrow-fill",value:"filled"}].reduce(function(css,prop){styfn.arrowPrefixes.forEach(function(prefix){var name=prefix+"-"+prop.name;var val=prop.value;css[name]=val});return css},{}));var parsedProps={};for(var i=0;i<this.properties.length;i++){var prop=this.properties[i];if(prop.pointsTo){continue}var name=prop.name;var val=rawProps[name];var parsedProp=this.parse(name,val);parsedProps[name]=parsedProp}return parsedProps});styfn.addDefaultStylesheet=function(){this.selector("$node > node").css({shape:"rectangle","padding-top":10,"padding-right":10,"padding-left":10,"padding-bottom":10,"background-color":"#eee","border-color":"#ccc","border-width":1}).selector("edge").css({width:3,"curve-style":"haystack"}).selector(":selected").css({"background-color":"#0169D9","line-color":"#0169D9","source-arrow-color":"#0169D9","target-arrow-color":"#0169D9","mid-source-arrow-color":"#0169D9","mid-target-arrow-color":"#0169D9"}).selector("node:parent:selected").css({"background-color":"#CCE1F9","border-color":"#aec8e5"}).selector(":active").css({"overlay-color":"black","overlay-padding":10,"overlay-opacity":.25}).selector("core").css({"selection-box-color":"#ddd","selection-box-opacity":.65,"selection-box-border-color":"#aaa","selection-box-border-width":1,"active-bg-color":"black","active-bg-opacity":.15,"active-bg-size":30,"outside-texture-bg-color":"#000","outside-texture-bg-opacity":.125});this.defaultLength=this.length};module.exports=styfn},{"../util":131}],127:[function(require,module,exports){"use strict";var util=require("../util");var Selector=require("../selector");var styfn={};styfn.applyFromString=function(string){var self=this;var style=this;var remaining=""+string;var selAndBlockStr;var blockRem;var propAndValStr;remaining=remaining.replace(/[/][*](\s|.)+?[*][/]/g,"");function removeSelAndBlockFromRemaining(){if(remaining.length>selAndBlockStr.length){remaining=remaining.substr(selAndBlockStr.length)}else{remaining=""}}function removePropAndValFromRem(){if(blockRem.length>propAndValStr.length){blockRem=blockRem.substr(propAndValStr.length)}else{blockRem=""}}while(true){var nothingLeftToParse=remaining.match(/^\s*$/);if(nothingLeftToParse){break}var selAndBlock=remaining.match(/^\s*((?:.|\s)+?)\s*\{((?:.|\s)+?)\}/);if(!selAndBlock){util.error("Halting stylesheet parsing: String stylesheet contains more to parse but no selector and block found in: "+remaining);break}selAndBlockStr=selAndBlock[0];var selectorStr=selAndBlock[1];if(selectorStr!=="core"){var selector=new Selector(selectorStr);if(selector._private.invalid){util.error("Skipping parsing of block: Invalid selector found in string stylesheet: "+selectorStr);removeSelAndBlockFromRemaining();continue}}var blockStr=selAndBlock[2];var invalidBlock=false;blockRem=blockStr;var props=[];while(true){var nothingLeftToParse=blockRem.match(/^\s*$/);if(nothingLeftToParse){break}var propAndVal=blockRem.match(/^\s*(.+?)\s*:\s*(.+?)\s*;/);if(!propAndVal){util.error("Skipping parsing of block: Invalid formatting of style property and value definitions found in:"+blockStr);invalidBlock=true;break}propAndValStr=propAndVal[0];var propStr=propAndVal[1];var valStr=propAndVal[2];var prop=self.properties[propStr];if(!prop){
-util.error("Skipping property: Invalid property name in: "+propAndValStr);removePropAndValFromRem();continue}var parsedProp=style.parse(propStr,valStr);if(!parsedProp){util.error("Skipping property: Invalid property definition in: "+propAndValStr);removePropAndValFromRem();continue}props.push({name:propStr,val:valStr});removePropAndValFromRem()}if(invalidBlock){removeSelAndBlockFromRemaining();break}style.selector(selectorStr);for(var i=0;i<props.length;i++){var prop=props[i];style.css(prop.name,prop.val)}removeSelAndBlockFromRemaining()}return style};styfn.fromString=function(string){var style=this;style.resetToDefault();style.applyFromString(string);return style};module.exports=styfn},{"../selector":118,"../util":131}],128:[function(require,module,exports){"use strict";var is=require("./is");var util=require("./util");var Style=require("./style");var Stylesheet=function(){if(!(this instanceof Stylesheet)){return new Stylesheet}this.length=0};var sheetfn=Stylesheet.prototype;sheetfn.instanceString=function(){return"stylesheet"};sheetfn.selector=function(selector){var i=this.length++;this[i]={selector:selector,properties:[]};return this};sheetfn.css=function(name,value){var i=this.length-1;if(is.string(name)){this[i].properties.push({name:name,value:value})}else if(is.plainObject(name)){var map=name;for(var j=0;j<Style.properties.length;j++){var prop=Style.properties[j];var mapVal=map[prop.name];if(mapVal===undefined){mapVal=map[util.dash2camel(prop.name)]}if(mapVal!==undefined){var name=prop.name;var value=mapVal;this[i].properties.push({name:name,value:value})}}}return this};sheetfn.style=sheetfn.css;sheetfn.generateStyle=function(cy){var style=new Style(cy);for(var i=0;i<this.length;i++){var context=this[i];var selector=context.selector;var props=context.properties;style.selector(selector);for(var j=0;j<props.length;j++){var prop=props[j];style.css(prop.name,prop.value)}}return style};module.exports=Stylesheet},{"./is":114,"./style":123,"./util":131}],129:[function(require,module,exports){(function(__dirname){"use strict";var window=require("./window");var util=require("./util");var Promise=require("./promise");var Event=require("./event");var define=require("./define");var is=require("./is");var Thread=function(opts){if(!(this instanceof Thread)){return new Thread(opts)}var _p=this._private={requires:[],files:[],queue:null,pass:[],disabled:false};if(is.plainObject(opts)){if(opts.disabled!=null){_p.disabled=!!opts.disabled}}};var thdfn=Thread.prototype;var stringifyFieldVal=function(val){var valStr=is.fn(val)?val.toString():"JSON.parse('"+JSON.stringify(val)+"')";return valStr};var fnAsRequire=function(fn){var req;var fnName;if(is.object(fn)&&fn.fn){req=fnAs(fn.fn,fn.name);fnName=fn.name;fn=fn.fn}else if(is.fn(fn)){req=fn.toString();fnName=fn.name}else if(is.string(fn)){req=fn}else if(is.object(fn)){if(fn.proto){req=""}else{req=fn.name+" = {};"}fnName=fn.name;fn=fn.obj}req+="\n";var protoreq=function(val,subname){if(val.prototype){var protoNonempty=false;for(var prop in val.prototype){protoNonempty=true;break}if(protoNonempty){req+=fnAsRequire({name:subname,obj:val,proto:true},val)}}};if(fn.prototype&&fnName!=null){for(var name in fn.prototype){var protoStr="";var val=fn.prototype[name];var valStr=stringifyFieldVal(val);var subname=fnName+".prototype."+name;protoStr+=subname+" = "+valStr+";\n";if(protoStr){req+=protoStr}protoreq(val,subname)}}if(!is.string(fn)){for(var name in fn){var propsStr="";if(fn.hasOwnProperty(name)){var val=fn[name];var valStr=stringifyFieldVal(val);var subname=fnName+'["'+name+'"]';propsStr+=subname+" = "+valStr+";\n"}if(propsStr){req+=propsStr}protoreq(val,subname)}}return req};var isPathStr=function(str){return is.string(str)&&str.match(/\.js$/)};util.extend(thdfn,{instanceString:function(){return"thread"},require:function(fn,as){var requires=this._private.requires;if(isPathStr(fn)){this._private.files.push(fn);return this}if(as){if(is.fn(fn)){fn={name:as,fn:fn}}else{fn={name:as,obj:fn}}}else{if(is.fn(fn)){if(!fn.name){throw'The function name could not be automatically determined.  Use thread.require( someFunction, "someFunction" )'}fn={name:fn.name,fn:fn}}}requires.push(fn);return this},pass:function(data){this._private.pass.push(data);return this},run:function(fn,pass){var self=this;var _p=this._private;pass=pass||_p.pass.shift();if(_p.stopped){throw"Attempted to run a stopped thread!  Start a new thread or do not stop the existing thread and reuse it."}if(_p.running){return _p.queue=_p.queue.then(function(){return self.run(fn,pass)})}var useWW=window!=null&&!_p.disabled;var useNode=!window&&typeof module!=="undefined"&&!_p.disabled;self.trigger("run");var runP=new Promise(function(resolve,reject){_p.running=true;var threadTechAlreadyExists=_p.ran;var fnImplStr=is.string(fn)?fn:fn.toString();var fnStr="\n"+_p.requires.map(function(r){return fnAsRequire(r)}).concat(_p.files.map(function(f){if(useWW){var wwifyFile=function(file){if(file.match(/^\.\//)||file.match(/^\.\./)){return window.location.origin+window.location.pathname+file}else if(file.match(/^\//)){return window.location.origin+"/"+file}return file};return'importScripts("'+wwifyFile(f)+'");'}else if(useNode){return'eval( require("fs").readFileSync("'+f+'", { encoding: "utf8" }) );'}else{throw"External file `"+f+"` can not be required without any threading technology."}})).concat(["( function(){","var ret = ("+fnImplStr+")("+JSON.stringify(pass)+");","if( ret !== undefined ){ resolve(ret); }","} )()\n"]).join("\n");_p.requires=[];_p.files=[];if(useWW){var fnBlob,fnUrl;if(!threadTechAlreadyExists){var fnPre=fnStr+"";fnStr=["function _ref_(o){ return eval(o); };","function broadcast(m){ return message(m); };","function message(m){ postMessage(m); };","function listen(fn){",'  self.addEventListener("message", function(m){ ','    if( typeof m === "object" && (m.data.$$eval || m.data === "$$start") ){',"    } else { ","      fn( m.data );","    }","  });","};",'self.addEventListener("message", function(m){  if( m.data.$$eval ){ eval( m.data.$$eval ); }  });',"function resolve(v){ postMessage({ $$resolve: v }); };","function reject(v){ postMessage({ $$reject: v }); };"].join("\n");fnStr+=fnPre;fnBlob=new Blob([fnStr],{type:"application/javascript"});fnUrl=window.URL.createObjectURL(fnBlob)}var ww=_p.webworker=_p.webworker||new Worker(fnUrl);if(threadTechAlreadyExists){ww.postMessage({$$eval:fnStr})}var cb;ww.addEventListener("message",cb=function(m){var isObject=is.object(m)&&is.object(m.data);if(isObject&&"$$resolve"in m.data){ww.removeEventListener("message",cb);resolve(m.data.$$resolve)}else if(isObject&&"$$reject"in m.data){ww.removeEventListener("message",cb);reject(m.data.$$reject)}else{self.trigger(new Event(m,{type:"message",message:m.data}))}},false);if(!threadTechAlreadyExists){ww.postMessage("$$start")}}else if(useNode){if(!_p.child){_p.child=require("child_process").fork(require("path").join(__dirname,"thread-node-fork"))}var child=_p.child;var cb;child.on("message",cb=function(m){if(is.object(m)&&"$$resolve"in m){child.removeListener("message",cb);resolve(m.$$resolve)}else if(is.object(m)&&"$$reject"in m){child.removeListener("message",cb);reject(m.$$reject)}else{self.trigger(new Event({},{type:"message",message:m}))}});child.send({$$eval:fnStr})}else{var promiseResolve=resolve;var promiseReject=reject;var timer=_p.timer=_p.timer||{listeners:[],exec:function(){fnStr=["function _ref_(o){ return eval(o); };","function broadcast(m){ return message(m); };",'function message(m){ self.trigger( new Event({}, { type: "message", message: m }) ); };',"function listen(fn){ timer.listeners.push( fn ); };","function resolve(v){ promiseResolve(v); };","function reject(v){ promiseReject(v); };"].join("\n")+fnStr;eval(fnStr)},message:function(m){var ls=timer.listeners;for(var i=0;i<ls.length;i++){var fn=ls[i];fn(m)}}};timer.exec()}}).then(function(v){_p.running=false;_p.ran=true;self.trigger("ran");return v});if(_p.queue==null){_p.queue=runP}return runP},message:function(m){var _p=this._private;if(_p.webworker){_p.webworker.postMessage(m)}if(_p.child){_p.child.send(m)}if(_p.timer){_p.timer.message(m)}return this},stop:function(){var _p=this._private;if(_p.webworker){_p.webworker.terminate()}if(_p.child){_p.child.kill()}if(_p.timer){}_p.stopped=true;return this.trigger("stop")},stopped:function(){return this._private.stopped}});var fnAs=function(fn,name){var fnStr=fn.toString();fnStr=fnStr.replace(/function\s*?\S*?\s*?\(/,"function "+name+"(");return fnStr};var defineFnal=function(opts){opts=opts||{};return function fnalImpl(fn,arg1){var fnStr=fnAs(fn,"_$_$_"+opts.name);this.require(fnStr);return this.run(["function( data ){","  var origResolve = resolve;","  var res = [];","  ","  resolve = function( val ){","    res.push( val );","  };","  ","  var ret = data."+opts.name+"( _$_$_"+opts.name+(arguments.length>1?", "+JSON.stringify(arg1):"")+" );","  ","  resolve = origResolve;","  resolve( res.length > 0 ? res : ret );","}"].join("\n"))}};util.extend(thdfn,{reduce:defineFnal({name:"reduce"}),reduceRight:defineFnal({name:"reduceRight"}),map:defineFnal({name:"map"})});var fn=thdfn;fn.promise=fn.run;fn.terminate=fn.halt=fn.stop;fn.include=fn.require;util.extend(thdfn,{on:define.on(),one:define.on({unbindSelfOnTrigger:true}),off:define.off(),trigger:define.trigger()});define.eventAliasesOn(thdfn);module.exports=Thread}).call(this,"/node_modules/cytoscape/src")},{"./define":75,"./event":76,"./is":114,"./promise":117,"./util":131,"./window":138,child_process:199,path:201}],130:[function(require,module,exports){"use strict";var is=require("../is");module.exports={hex2tuple:function(hex){if(!(hex.length===4||hex.length===7)||hex[0]!=="#"){return}var shortHex=hex.length===4;var r,g,b;var base=16;if(shortHex){r=parseInt(hex[1]+hex[1],base);g=parseInt(hex[2]+hex[2],base);b=parseInt(hex[3]+hex[3],base)}else{r=parseInt(hex[1]+hex[2],base);g=parseInt(hex[3]+hex[4],base);b=parseInt(hex[5]+hex[6],base)}return[r,g,b]},hsl2tuple:function(hsl){var ret;var h,s,l,a,r,g,b;function hue2rgb(p,q,t){if(t<0)t+=1;if(t>1)t-=1;if(t<1/6)return p+(q-p)*6*t;if(t<1/2)return q;if(t<2/3)return p+(q-p)*(2/3-t)*6;return p}var m=new RegExp("^"+this.regex.hsla+"$").exec(hsl);if(m){h=parseInt(m[1]);if(h<0){h=(360- -1*h%360)%360}else if(h>360){h=h%360}h/=360;s=parseFloat(m[2]);if(s<0||s>100){return}s=s/100;l=parseFloat(m[3]);if(l<0||l>100){return}l=l/100;a=m[4];if(a!==undefined){a=parseFloat(a);if(a<0||a>1){return}}if(s===0){r=g=b=Math.round(l*255)}else{var q=l<.5?l*(1+s):l+s-l*s;var p=2*l-q;r=Math.round(255*hue2rgb(p,q,h+1/3));g=Math.round(255*hue2rgb(p,q,h));b=Math.round(255*hue2rgb(p,q,h-1/3))}ret=[r,g,b,a]}return ret},rgb2tuple:function(rgb){var ret;var m=new RegExp("^"+this.regex.rgba+"$").exec(rgb);if(m){ret=[];var isPct=[];for(var i=1;i<=3;i++){var channel=m[i];if(channel[channel.length-1]==="%"){isPct[i]=true}channel=parseFloat(channel);if(isPct[i]){channel=channel/100*255}if(channel<0||channel>255){return}ret.push(Math.floor(channel))}var atLeastOneIsPct=isPct[1]||isPct[2]||isPct[3];var allArePct=isPct[1]&&isPct[2]&&isPct[3];if(atLeastOneIsPct&&!allArePct){return}var alpha=m[4];if(alpha!==undefined){alpha=parseFloat(alpha);if(alpha<0||alpha>1){return}ret.push(alpha)}}return ret},colorname2tuple:function(color){return this.colors[color.toLowerCase()]},color2tuple:function(color){return(is.array(color)?color:null)||this.colorname2tuple(color)||this.hex2tuple(color)||this.rgb2tuple(color)||this.hsl2tuple(color)},colors:{transparent:[0,0,0,0],aliceblue:[240,248,255],antiquewhite:[250,235,215],aqua:[0,255,255],aquamarine:[127,255,212],azure:[240,255,255],beige:[245,245,220],bisque:[255,228,196],black:[0,0,0],blanchedalmond:[255,235,205],blue:[0,0,255],blueviolet:[138,43,226],brown:[165,42,42],burlywood:[222,184,135],cadetblue:[95,158,160],chartreuse:[127,255,0],chocolate:[210,105,30],coral:[255,127,80],cornflowerblue:[100,149,237],cornsilk:[255,248,220],crimson:[220,20,60],cyan:[0,255,255],darkblue:[0,0,139],darkcyan:[0,139,139],darkgoldenrod:[184,134,11],darkgray:[169,169,169],darkgreen:[0,100,0],darkgrey:[169,169,169],darkkhaki:[189,183,107],darkmagenta:[139,0,139],darkolivegreen:[85,107,47],darkorange:[255,140,0],darkorchid:[153,50,204],darkred:[139,0,0],darksalmon:[233,150,122],darkseagreen:[143,188,143],darkslateblue:[72,61,139],darkslategray:[47,79,79],darkslategrey:[47,79,79],darkturquoise:[0,206,209],darkviolet:[148,0,211],deeppink:[255,20,147],deepskyblue:[0,191,255],dimgray:[105,105,105],dimgrey:[105,105,105],dodgerblue:[30,144,255],firebrick:[178,34,34],floralwhite:[255,250,240],forestgreen:[34,139,34],fuchsia:[255,0,255],gainsboro:[220,220,220],ghostwhite:[248,248,255],gold:[255,215,0],goldenrod:[218,165,32],gray:[128,128,128],grey:[128,128,128],green:[0,128,0],greenyellow:[173,255,47],honeydew:[240,255,240],hotpink:[255,105,180],indianred:[205,92,92],indigo:[75,0,130],ivory:[255,255,240],khaki:[240,230,140],lavender:[230,230,250],lavenderblush:[255,240,245],lawngreen:[124,252,0],lemonchiffon:[255,250,205],lightblue:[173,216,230],lightcoral:[240,128,128],lightcyan:[224,255,255],lightgoldenrodyellow:[250,250,210],lightgray:[211,211,211],lightgreen:[144,238,144],lightgrey:[211,211,211],lightpink:[255,182,193],lightsalmon:[255,160,122],lightseagreen:[32,178,170],lightskyblue:[135,206,250],lightslategray:[119,136,153],lightslategrey:[119,136,153],lightsteelblue:[176,196,222],lightyellow:[255,255,224],lime:[0,255,0],limegreen:[50,205,50],linen:[250,240,230],magenta:[255,0,255],maroon:[128,0,0],mediumaquamarine:[102,205,170],mediumblue:[0,0,205],mediumorchid:[186,85,211],mediumpurple:[147,112,219],mediumseagreen:[60,179,113],mediumslateblue:[123,104,238],mediumspringgreen:[0,250,154],mediumturquoise:[72,209,204],mediumvioletred:[199,21,133],midnightblue:[25,25,112],mintcream:[245,255,250],mistyrose:[255,228,225],moccasin:[255,228,181],navajowhite:[255,222,173],navy:[0,0,128],oldlace:[253,245,230],olive:[128,128,0],olivedrab:[107,142,35],orange:[255,165,0],orangered:[255,69,0],orchid:[218,112,214],palegoldenrod:[238,232,170],palegreen:[152,251,152],paleturquoise:[175,238,238],palevioletred:[219,112,147],papayawhip:[255,239,213],peachpuff:[255,218,185],peru:[205,133,63],pink:[255,192,203],plum:[221,160,221],powderblue:[176,224,230],purple:[128,0,128],red:[255,0,0],rosybrown:[188,143,143],royalblue:[65,105,225],saddlebrown:[139,69,19],salmon:[250,128,114],sandybrown:[244,164,96],seagreen:[46,139,87],seashell:[255,245,238],sienna:[160,82,45],silver:[192,192,192],skyblue:[135,206,235],slateblue:[106,90,205],slategray:[112,128,144],slategrey:[112,128,144],snow:[255,250,250],springgreen:[0,255,127],steelblue:[70,130,180],tan:[210,180,140],teal:[0,128,128],thistle:[216,191,216],tomato:[255,99,71],turquoise:[64,224,208],violet:[238,130,238],wheat:[245,222,179],white:[255,255,255],whitesmoke:[245,245,245],yellow:[255,255,0],yellowgreen:[154,205,50]}}},{"../is":114}],131:[function(require,module,exports){"use strict";var is=require("../is");var math=require("../math");var util={trueify:function(){return true},falsify:function(){return false},zeroify:function(){return 0},noop:function(){},error:function(msg){if(console.error){console.error.apply(console,arguments);if(console.trace){console.trace()}}else{console.log.apply(console,arguments);if(console.trace){console.trace()}}},clone:function(obj){return this.extend({},obj)},copy:function(obj){if(obj==null){return obj}if(is.array(obj)){return obj.slice()}else if(is.plainObject(obj)){return this.clone(obj)}else{return obj}},uuid:function(a,b){for(b=a="";a++<36;b+=a*51&52?(a^15?8^Math.random()*(a^20?16:4):4).toString(16):"-");return b}};util.makeBoundingBox=math.makeBoundingBox.bind(math);util._staticEmptyObject={};util.staticEmptyObject=function(){return util._staticEmptyObject};util.extend=Object.assign!=null?Object.assign:function(tgt){var args=arguments;for(var i=1;i<args.length;i++){var obj=args[i];if(!obj){continue}var keys=Object.keys(obj);for(var j=0;j<keys.length;j++){var k=keys[j];tgt[k]=obj[k]}}return tgt};util.default=function(val,def){if(val===undefined){return def}else{return val}};util.removeFromArray=function(arr,ele,manyCopies){for(var i=arr.length;i>=0;i--){if(arr[i]===ele){arr.splice(i,1);if(!manyCopies){break}}}};util.clearArray=function(arr){arr.splice(0,arr.length)};util.getPrefixedProperty=function(obj,propName,prefix){if(prefix){propName=this.prependCamel(prefix,propName)}return obj[propName]};util.setPrefixedProperty=function(obj,propName,prefix,value){if(prefix){propName=this.prependCamel(prefix,propName)}obj[propName]=value};[require("./colors"),require("./maps"),{memoize:require("./memoize")},require("./regex"),require("./strings"),require("./timing")].forEach(function(req){util.extend(util,req)});module.exports=util},{"../is":114,"../math":116,"./colors":130,"./maps":132,"./memoize":133,"./regex":134,"./strings":135,"./timing":136}],132:[function(require,module,exports){"use strict";var is=require("../is");module.exports={mapEmpty:function(map){var empty=true;if(map!=null){return Object.keys(map).length===0}return empty},pushMap:function(options){var array=this.getMap(options);if(array==null){this.setMap(this.extend({},options,{value:[options.value]}))}else{array.push(options.value)}},setMap:function(options){var obj=options.map;var key;var keys=options.keys;var l=keys.length;for(var i=0;i<l;i++){var key=keys[i];if(is.plainObject(key)){this.error("Tried to set map with object key")}if(i<keys.length-1){if(obj[key]==null){obj[key]={}}obj=obj[key]}else{obj[key]=options.value}}},getMap:function(options){var obj=options.map;var keys=options.keys;var l=keys.length;for(var i=0;i<l;i++){var key=keys[i];if(is.plainObject(key)){this.error("Tried to get map with object key")}obj=obj[key];if(obj==null){return obj}}return obj},deleteMap:function(options){var obj=options.map;var keys=options.keys;var l=keys.length;var keepChildren=options.keepChildren;for(var i=0;i<l;i++){var key=keys[i];if(is.plainObject(key)){this.error("Tried to delete map with object key")}var lastKey=i===options.keys.length-1;if(lastKey){if(keepChildren){var children=Object.keys(obj);for(var j=0;j<children.length;j++){var child=children[j];if(!keepChildren[child]){obj[child]=undefined}}}else{obj[key]=undefined}}else{obj=obj[key]}}}}},{"../is":114}],133:[function(require,module,exports){"use strict";module.exports=function memoize(fn,keyFn){if(!keyFn){keyFn=function(){if(arguments.length===1){return arguments[0]}else if(arguments.length===0){return"undefined"}var args=[];for(var i=0;i<arguments.length;i++){args.push(arguments[i])}return args.join("$")}}var memoizedFn=function(){var self=this;var args=arguments;var ret;var k=keyFn.apply(self,args);var cache=memoizedFn.cache;if(!(ret=cache[k])){ret=cache[k]=fn.apply(self,args)}return ret};memoizedFn.cache={};return memoizedFn}},{}],134:[function(require,module,exports){"use strict";var number="(?:[-+]?(?:(?:\\d+|\\d*\\.\\d+)(?:[Ee][+-]?\\d+)?))";var rgba="rgb[a]?\\(("+number+"[%]?)\\s*,\\s*("+number+"[%]?)\\s*,\\s*("+number+"[%]?)(?:\\s*,\\s*("+number+"))?\\)";var rgbaNoBackRefs="rgb[a]?\\((?:"+number+"[%]?)\\s*,\\s*(?:"+number+"[%]?)\\s*,\\s*(?:"+number+"[%]?)(?:\\s*,\\s*(?:"+number+"))?\\)";var hsla="hsl[a]?\\(("+number+")\\s*,\\s*("+number+"[%])\\s*,\\s*("+number+"[%])(?:\\s*,\\s*("+number+"))?\\)";var hslaNoBackRefs="hsl[a]?\\((?:"+number+")\\s*,\\s*(?:"+number+"[%])\\s*,\\s*(?:"+number+"[%])(?:\\s*,\\s*(?:"+number+"))?\\)";var hex3="\\#[0-9a-fA-F]{3}";var hex6="\\#[0-9a-fA-F]{6}";module.exports={regex:{number:number,rgba:rgba,rgbaNoBackRefs:rgbaNoBackRefs,hsla:hsla,hslaNoBackRefs:hslaNoBackRefs,hex3:hex3,hex6:hex6}}},{}],135:[function(require,module,exports){"use strict";var memoize=require("./memoize");var is=require("../is");module.exports={camel2dash:memoize(function(str){return str.replace(/([A-Z])/g,function(v){return"-"+v.toLowerCase()})}),dash2camel:memoize(function(str){return str.replace(/(-\w)/g,function(v){return v[1].toUpperCase()})}),prependCamel:memoize(function(prefix,str){return prefix+str[0].toUpperCase()+str.substring(1)},function(prefix,str){return prefix+"$"+str}),capitalize:function(str){if(is.emptyString(str)){return str}return str.charAt(0).toUpperCase()+str.substring(1)}}},{"../is":114,"./memoize":133}],136:[function(require,module,exports){"use strict";var window=require("../window");var is=require("../is");var performance=window?window.performance:null;var util={};var raf=!window?null:window.requestAnimationFrame||window.mozRequestAnimationFrame||window.webkitRequestAnimationFrame||window.msRequestAnimationFrame;raf=raf||function(fn){if(fn){setTimeout(function(){fn(pnow())},1e3/60)}};util.requestAnimationFrame=function(fn){raf(fn)};var pnow=performance&&performance.now?function(){return performance.now()}:function(){return Date.now()};util.performanceNow=pnow;util.throttle=function(func,wait,options){var leading=true,trailing=true;if(options===false){leading=false}else if(is.plainObject(options)){leading="leading"in options?options.leading:leading;trailing="trailing"in options?options.trailing:trailing}options=options||{};options.leading=leading;options.maxWait=wait;options.trailing=trailing;return util.debounce(func,wait,options)};util.now=function(){return Date.now()};util.debounce=function(func,wait,options){var util=this;var args,maxTimeoutId,result,stamp,thisArg,timeoutId,trailingCall,lastCalled=0,maxWait=false,trailing=true;if(!is.fn(func)){return}wait=Math.max(0,wait)||0;if(options===true){var leading=true;trailing=false}else if(is.plainObject(options)){leading=options.leading;maxWait="maxWait"in options&&(Math.max(wait,options.maxWait)||0);trailing="trailing"in options?options.trailing:trailing}var delayed=function(){var remaining=wait-(util.now()-stamp);if(remaining<=0){if(maxTimeoutId){clearTimeout(maxTimeoutId)}var isCalled=trailingCall;maxTimeoutId=timeoutId=trailingCall=undefined;if(isCalled){lastCalled=util.now();result=func.apply(thisArg,args);if(!timeoutId&&!maxTimeoutId){args=thisArg=null}}}else{timeoutId=setTimeout(delayed,remaining)}};var maxDelayed=function(){if(timeoutId){clearTimeout(timeoutId)}maxTimeoutId=timeoutId=trailingCall=undefined;if(trailing||maxWait!==wait){lastCalled=util.now();result=func.apply(thisArg,args);if(!timeoutId&&!maxTimeoutId){args=thisArg=null}}};return function(){args=arguments;stamp=util.now();thisArg=this;trailingCall=trailing&&(timeoutId||!leading);if(maxWait===false){var leadingCall=leading&&!timeoutId}else{if(!maxTimeoutId&&!leading){lastCalled=stamp}var remaining=maxWait-(stamp-lastCalled),isCalled=remaining<=0;if(isCalled){if(maxTimeoutId){maxTimeoutId=clearTimeout(maxTimeoutId)}lastCalled=stamp;result=func.apply(thisArg,args)}else if(!maxTimeoutId){maxTimeoutId=setTimeout(maxDelayed,remaining)}}if(isCalled&&timeoutId){timeoutId=clearTimeout(timeoutId)}else if(!timeoutId&&wait!==maxWait){timeoutId=setTimeout(delayed,wait)}if(leadingCall){isCalled=true;result=func.apply(thisArg,args)}if(isCalled&&!timeoutId&&!maxTimeoutId){args=thisArg=null}return result}};module.exports=util},{"../is":114,"../window":138}],137:[function(require,module,exports){module.exports="2.7.11"},{}],138:[function(require,module,exports){module.exports=typeof window==="undefined"?null:window},{}],139:[function(require,module,exports){(function(global,factory){if(typeof module==="object"&&typeof module.exports==="object"){module.exports=global.document?factory(global,true):function(w){if(!w.document){throw new Error("jQuery requires a window with a document")}return factory(w)}}else{factory(global)}})(typeof window!=="undefined"?window:this,function(window,noGlobal){var arr=[];var document=window.document;var slice=arr.slice;var concat=arr.concat;var push=arr.push;var indexOf=arr.indexOf;var class2type={};var toString=class2type.toString;var hasOwn=class2type.hasOwnProperty;var support={};var version="2.2.4",jQuery=function(selector,context){return new jQuery.fn.init(selector,context)},rtrim=/^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g,rmsPrefix=/^-ms-/,rdashAlpha=/-([\da-z])/gi,fcamelCase=function(all,letter){return letter.toUpperCase()};jQuery.fn=jQuery.prototype={jquery:version,constructor:jQuery,selector:"",length:0,toArray:function(){return slice.call(this)},get:function(num){return num!=null?num<0?this[num+this.length]:this[num]:slice.call(this)},pushStack:function(elems){var ret=jQuery.merge(this.constructor(),elems);ret.prevObject=this;ret.context=this.context;return ret},each:function(callback){return jQuery.each(this,callback)},map:function(callback){return this.pushStack(jQuery.map(this,function(elem,i){return callback.call(elem,i,elem)}))},slice:function(){return this.pushStack(slice.apply(this,arguments))},first:function(){return this.eq(0)},last:function(){return this.eq(-1)},eq:function(i){var len=this.length,j=+i+(i<0?len:0);return this.pushStack(j>=0&&j<len?[this[j]]:[])},end:function(){return this.prevObject||this.constructor()},push:push,sort:arr.sort,splice:arr.splice};jQuery.extend=jQuery.fn.extend=function(){var options,name,src,copy,copyIsArray,clone,target=arguments[0]||{},i=1,length=arguments.length,deep=false;if(typeof target==="boolean"){deep=target;target=arguments[i]||{};i++}if(typeof target!=="object"&&!jQuery.isFunction(target)){target={}}if(i===length){target=this;i--}for(;i<length;i++){if((options=arguments[i])!=null){for(name in options){src=target[name];copy=options[name];if(target===copy){continue}if(deep&&copy&&(jQuery.isPlainObject(copy)||(copyIsArray=jQuery.isArray(copy)))){if(copyIsArray){copyIsArray=false;clone=src&&jQuery.isArray(src)?src:[]}else{clone=src&&jQuery.isPlainObject(src)?src:{}}target[name]=jQuery.extend(deep,clone,copy)}else if(copy!==undefined){target[name]=copy}}}}return target};jQuery.extend({expando:"jQuery"+(version+Math.random()).replace(/\D/g,""),isReady:true,error:function(msg){throw new Error(msg)},noop:function(){},isFunction:function(obj){return jQuery.type(obj)==="function"},isArray:Array.isArray,isWindow:function(obj){return obj!=null&&obj===obj.window},isNumeric:function(obj){var realStringObj=obj&&obj.toString();return!jQuery.isArray(obj)&&realStringObj-parseFloat(realStringObj)+1>=0},isPlainObject:function(obj){var key;if(jQuery.type(obj)!=="object"||obj.nodeType||jQuery.isWindow(obj)){return false}if(obj.constructor&&!hasOwn.call(obj,"constructor")&&!hasOwn.call(obj.constructor.prototype||{},"isPrototypeOf")){return false}for(key in obj){}return key===undefined||hasOwn.call(obj,key)},isEmptyObject:function(obj){var name;for(name in obj){return false}return true},type:function(obj){if(obj==null){return obj+""}return typeof obj==="object"||typeof obj==="function"?class2type[toString.call(obj)]||"object":typeof obj},globalEval:function(code){var script,indirect=eval;code=jQuery.trim(code);if(code){if(code.indexOf("use strict")===1){script=document.createElement("script");script.text=code;document.head.appendChild(script).parentNode.removeChild(script)}else{indirect(code)}}},camelCase:function(string){return string.replace(rmsPrefix,"ms-").replace(rdashAlpha,fcamelCase)},nodeName:function(elem,name){return elem.nodeName&&elem.nodeName.toLowerCase()===name.toLowerCase()},each:function(obj,callback){var length,i=0;if(isArrayLike(obj)){length=obj.length;for(;i<length;i++){if(callback.call(obj[i],i,obj[i])===false){break}}}else{for(i in obj){if(callback.call(obj[i],i,obj[i])===false){break}}}return obj},trim:function(text){return text==null?"":(text+"").replace(rtrim,"")},makeArray:function(arr,results){var ret=results||[];if(arr!=null){if(isArrayLike(Object(arr))){jQuery.merge(ret,typeof arr==="string"?[arr]:arr)}else{push.call(ret,arr)}}return ret},inArray:function(elem,arr,i){return arr==null?-1:indexOf.call(arr,elem,i)},merge:function(first,second){var len=+second.length,j=0,i=first.length;for(;j<len;j++){first[i++]=second[j]}first.length=i;return first},grep:function(elems,callback,invert){var callbackInverse,matches=[],i=0,length=elems.length,callbackExpect=!invert;for(;i<length;i++){callbackInverse=!callback(elems[i],i);if(callbackInverse!==callbackExpect){matches.push(elems[i])}}return matches},map:function(elems,callback,arg){var length,value,i=0,ret=[];if(isArrayLike(elems)){length=elems.length;for(;i<length;i++){value=callback(elems[i],i,arg);if(value!=null){ret.push(value)}}}else{for(i in elems){value=callback(elems[i],i,arg);if(value!=null){ret.push(value)}}}return concat.apply([],ret)},guid:1,proxy:function(fn,context){var tmp,args,proxy;if(typeof context==="string"){tmp=fn[context];context=fn;fn=tmp}if(!jQuery.isFunction(fn)){return undefined}args=slice.call(arguments,2);proxy=function(){return fn.apply(context||this,args.concat(slice.call(arguments)))};proxy.guid=fn.guid=fn.guid||jQuery.guid++;return proxy},now:Date.now,support:support});if(typeof Symbol==="function"){jQuery.fn[Symbol.iterator]=arr[Symbol.iterator]}jQuery.each("Boolean Number String Function Array Date RegExp Object Error Symbol".split(" "),function(i,name){class2type["[object "+name+"]"]=name.toLowerCase()});function isArrayLike(obj){var length=!!obj&&"length"in obj&&obj.length,type=jQuery.type(obj);if(type==="function"||jQuery.isWindow(obj)){return false}return type==="array"||length===0||typeof length==="number"&&length>0&&length-1 in obj}var Sizzle=function(window){var i,support,Expr,getText,isXML,tokenize,compile,select,outermostContext,sortInput,hasDuplicate,setDocument,document,docElem,documentIsHTML,rbuggyQSA,rbuggyMatches,matches,contains,expando="sizzle"+1*new Date,preferredDoc=window.document,dirruns=0,done=0,classCache=createCache(),tokenCache=createCache(),compilerCache=createCache(),sortOrder=function(a,b){if(a===b){hasDuplicate=true}return 0},MAX_NEGATIVE=1<<31,hasOwn={}.hasOwnProperty,arr=[],pop=arr.pop,push_native=arr.push,push=arr.push,slice=arr.slice,indexOf=function(list,elem){var i=0,len=list.length;for(;i<len;i++){if(list[i]===elem){return i}}return-1},booleans="checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|ismap|loop|multiple|open|readonly|required|scoped",whitespace="[\\x20\\t\\r\\n\\f]",identifier="(?:\\\\.|[\\w-]|[^\\x00-\\xa0])+",attributes="\\["+whitespace+"*("+identifier+")(?:"+whitespace+"*([*^$|!~]?=)"+whitespace+"*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|("+identifier+"))|)"+whitespace+"*\\]",pseudos=":("+identifier+")(?:\\(("+"('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|"+"((?:\\\\.|[^\\\\()[\\]]|"+attributes+")*)|"+".*"+")\\)|)",rwhitespace=new RegExp(whitespace+"+","g"),rtrim=new RegExp("^"+whitespace+"+|((?:^|[^\\\\])(?:\\\\.)*)"+whitespace+"+$","g"),rcomma=new RegExp("^"+whitespace+"*,"+whitespace+"*"),rcombinators=new RegExp("^"+whitespace+"*([>+~]|"+whitespace+")"+whitespace+"*"),rattributeQuotes=new RegExp("="+whitespace+"*([^\\]'\"]*?)"+whitespace+"*\\]","g"),rpseudo=new RegExp(pseudos),ridentifier=new RegExp("^"+identifier+"$"),matchExpr={ID:new RegExp("^#("+identifier+")"),CLASS:new RegExp("^\\.("+identifier+")"),TAG:new RegExp("^("+identifier+"|[*])"),ATTR:new RegExp("^"+attributes),PSEUDO:new RegExp("^"+pseudos),CHILD:new RegExp("^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\("+whitespace+"*(even|odd|(([+-]|)(\\d*)n|)"+whitespace+"*(?:([+-]|)"+whitespace+"*(\\d+)|))"+whitespace+"*\\)|)","i"),bool:new RegExp("^(?:"+booleans+")$","i"),needsContext:new RegExp("^"+whitespace+"*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\("+whitespace+"*((?:-\\d)?\\d*)"+whitespace+"*\\)|)(?=[^-]|$)","i")},rinputs=/^(?:input|select|textarea|button)$/i,rheader=/^h\d$/i,rnative=/^[^{]+\{\s*\[native \w/,rquickExpr=/^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/,rsibling=/[+~]/,rescape=/'|\\/g,runescape=new RegExp("\\\\([\\da-f]{1,6}"+whitespace+"?|("+whitespace+")|.)","ig"),funescape=function(_,escaped,escapedWhitespace){var high="0x"+escaped-65536;return high!==high||escapedWhitespace?escaped:high<0?String.fromCharCode(high+65536):String.fromCharCode(high>>10|55296,high&1023|56320)},unloadHandler=function(){setDocument()};try{push.apply(arr=slice.call(preferredDoc.childNodes),preferredDoc.childNodes);arr[preferredDoc.childNodes.length].nodeType;
+util.error("Skipping property: Invalid property name in: "+propAndValStr);removePropAndValFromRem();continue}var parsedProp=style.parse(propStr,valStr);if(!parsedProp){util.error("Skipping property: Invalid property definition in: "+propAndValStr);removePropAndValFromRem();continue}props.push({name:propStr,val:valStr});removePropAndValFromRem()}if(invalidBlock){removeSelAndBlockFromRemaining();break}style.selector(selectorStr);for(var i=0;i<props.length;i++){var prop=props[i];style.css(prop.name,prop.val)}removeSelAndBlockFromRemaining()}return style};styfn.fromString=function(string){var style=this;style.resetToDefault();style.applyFromString(string);return style};module.exports=styfn},{"../selector":118,"../util":131}],128:[function(require,module,exports){"use strict";var is=require("./is");var util=require("./util");var Style=require("./style");var Stylesheet=function(){if(!(this instanceof Stylesheet)){return new Stylesheet}this.length=0};var sheetfn=Stylesheet.prototype;sheetfn.instanceString=function(){return"stylesheet"};sheetfn.selector=function(selector){var i=this.length++;this[i]={selector:selector,properties:[]};return this};sheetfn.css=function(name,value){var i=this.length-1;if(is.string(name)){this[i].properties.push({name:name,value:value})}else if(is.plainObject(name)){var map=name;for(var j=0;j<Style.properties.length;j++){var prop=Style.properties[j];var mapVal=map[prop.name];if(mapVal===undefined){mapVal=map[util.dash2camel(prop.name)]}if(mapVal!==undefined){var name=prop.name;var value=mapVal;this[i].properties.push({name:name,value:value})}}}return this};sheetfn.style=sheetfn.css;sheetfn.generateStyle=function(cy){var style=new Style(cy);for(var i=0;i<this.length;i++){var context=this[i];var selector=context.selector;var props=context.properties;style.selector(selector);for(var j=0;j<props.length;j++){var prop=props[j];style.css(prop.name,prop.value)}}return style};module.exports=Stylesheet},{"./is":114,"./style":123,"./util":131}],129:[function(require,module,exports){(function(__dirname){"use strict";var window=require("./window");var util=require("./util");var Promise=require("./promise");var Event=require("./event");var define=require("./define");var is=require("./is");var Thread=function(opts){if(!(this instanceof Thread)){return new Thread(opts)}var _p=this._private={requires:[],files:[],queue:null,pass:[],disabled:false};if(is.plainObject(opts)){if(opts.disabled!=null){_p.disabled=!!opts.disabled}}};var thdfn=Thread.prototype;var stringifyFieldVal=function(val){var valStr=is.fn(val)?val.toString():"JSON.parse('"+JSON.stringify(val)+"')";return valStr};var fnAsRequire=function(fn){var req;var fnName;if(is.object(fn)&&fn.fn){req=fnAs(fn.fn,fn.name);fnName=fn.name;fn=fn.fn}else if(is.fn(fn)){req=fn.toString();fnName=fn.name}else if(is.string(fn)){req=fn}else if(is.object(fn)){if(fn.proto){req=""}else{req=fn.name+" = {};"}fnName=fn.name;fn=fn.obj}req+="\n";var protoreq=function(val,subname){if(val.prototype){var protoNonempty=false;for(var prop in val.prototype){protoNonempty=true;break}if(protoNonempty){req+=fnAsRequire({name:subname,obj:val,proto:true},val)}}};if(fn.prototype&&fnName!=null){for(var name in fn.prototype){var protoStr="";var val=fn.prototype[name];var valStr=stringifyFieldVal(val);var subname=fnName+".prototype."+name;protoStr+=subname+" = "+valStr+";\n";if(protoStr){req+=protoStr}protoreq(val,subname)}}if(!is.string(fn)){for(var name in fn){var propsStr="";if(fn.hasOwnProperty(name)){var val=fn[name];var valStr=stringifyFieldVal(val);var subname=fnName+'["'+name+'"]';propsStr+=subname+" = "+valStr+";\n"}if(propsStr){req+=propsStr}protoreq(val,subname)}}return req};var isPathStr=function(str){return is.string(str)&&str.match(/\.js$/)};util.extend(thdfn,{instanceString:function(){return"thread"},require:function(fn,as){var requires=this._private.requires;if(isPathStr(fn)){this._private.files.push(fn);return this}if(as){if(is.fn(fn)){fn={name:as,fn:fn}}else{fn={name:as,obj:fn}}}else{if(is.fn(fn)){if(!fn.name){throw'The function name could not be automatically determined.  Use thread.require( someFunction, "someFunction" )'}fn={name:fn.name,fn:fn}}}requires.push(fn);return this},pass:function(data){this._private.pass.push(data);return this},run:function(fn,pass){var self=this;var _p=this._private;pass=pass||_p.pass.shift();if(_p.stopped){throw"Attempted to run a stopped thread!  Start a new thread or do not stop the existing thread and reuse it."}if(_p.running){return _p.queue=_p.queue.then(function(){return self.run(fn,pass)})}var useWW=window!=null&&!_p.disabled;var useNode=!window&&typeof module!=="undefined"&&!_p.disabled;self.trigger("run");var runP=new Promise(function(resolve,reject){_p.running=true;var threadTechAlreadyExists=_p.ran;var fnImplStr=is.string(fn)?fn:fn.toString();var fnStr="\n"+_p.requires.map(function(r){return fnAsRequire(r)}).concat(_p.files.map(function(f){if(useWW){var wwifyFile=function(file){if(file.match(/^\.\//)||file.match(/^\.\./)){return window.location.origin+window.location.pathname+file}else if(file.match(/^\//)){return window.location.origin+"/"+file}return file};return'importScripts("'+wwifyFile(f)+'");'}else if(useNode){return'eval( require("fs").readFileSync("'+f+'", { encoding: "utf8" }) );'}else{throw"External file `"+f+"` can not be required without any threading technology."}})).concat(["( function(){","var ret = ("+fnImplStr+")("+JSON.stringify(pass)+");","if( ret !== undefined ){ resolve(ret); }","} )()\n"]).join("\n");_p.requires=[];_p.files=[];if(useWW){var fnBlob,fnUrl;if(!threadTechAlreadyExists){var fnPre=fnStr+"";fnStr=["function _ref_(o){ return eval(o); };","function broadcast(m){ return message(m); };","function message(m){ postMessage(m); };","function listen(fn){",'  self.addEventListener("message", function(m){ ','    if( typeof m === "object" && (m.data.$$eval || m.data === "$$start") ){',"    } else { ","      fn( m.data );","    }","  });","};",'self.addEventListener("message", function(m){  if( m.data.$$eval ){ eval( m.data.$$eval ); }  });',"function resolve(v){ postMessage({ $$resolve: v }); };","function reject(v){ postMessage({ $$reject: v }); };"].join("\n");fnStr+=fnPre;fnBlob=new Blob([fnStr],{type:"application/javascript"});fnUrl=window.URL.createObjectURL(fnBlob)}var ww=_p.webworker=_p.webworker||new Worker(fnUrl);if(threadTechAlreadyExists){ww.postMessage({$$eval:fnStr})}var cb;ww.addEventListener("message",cb=function(m){var isObject=is.object(m)&&is.object(m.data);if(isObject&&"$$resolve"in m.data){ww.removeEventListener("message",cb);resolve(m.data.$$resolve)}else if(isObject&&"$$reject"in m.data){ww.removeEventListener("message",cb);reject(m.data.$$reject)}else{self.trigger(new Event(m,{type:"message",message:m.data}))}},false);if(!threadTechAlreadyExists){ww.postMessage("$$start")}}else if(useNode){if(!_p.child){_p.child=require("child_process").fork(require("path").join(__dirname,"thread-node-fork"))}var child=_p.child;var cb;child.on("message",cb=function(m){if(is.object(m)&&"$$resolve"in m){child.removeListener("message",cb);resolve(m.$$resolve)}else if(is.object(m)&&"$$reject"in m){child.removeListener("message",cb);reject(m.$$reject)}else{self.trigger(new Event({},{type:"message",message:m}))}});child.send({$$eval:fnStr})}else{var promiseResolve=resolve;var promiseReject=reject;var timer=_p.timer=_p.timer||{listeners:[],exec:function(){fnStr=["function _ref_(o){ return eval(o); };","function broadcast(m){ return message(m); };",'function message(m){ self.trigger( new Event({}, { type: "message", message: m }) ); };',"function listen(fn){ timer.listeners.push( fn ); };","function resolve(v){ promiseResolve(v); };","function reject(v){ promiseReject(v); };"].join("\n")+fnStr;eval(fnStr)},message:function(m){var ls=timer.listeners;for(var i=0;i<ls.length;i++){var fn=ls[i];fn(m)}}};timer.exec()}}).then(function(v){_p.running=false;_p.ran=true;self.trigger("ran");return v});if(_p.queue==null){_p.queue=runP}return runP},message:function(m){var _p=this._private;if(_p.webworker){_p.webworker.postMessage(m)}if(_p.child){_p.child.send(m)}if(_p.timer){_p.timer.message(m)}return this},stop:function(){var _p=this._private;if(_p.webworker){_p.webworker.terminate()}if(_p.child){_p.child.kill()}if(_p.timer){}_p.stopped=true;return this.trigger("stop")},stopped:function(){return this._private.stopped}});var fnAs=function(fn,name){var fnStr=fn.toString();fnStr=fnStr.replace(/function\s*?\S*?\s*?\(/,"function "+name+"(");return fnStr};var defineFnal=function(opts){opts=opts||{};return function fnalImpl(fn,arg1){var fnStr=fnAs(fn,"_$_$_"+opts.name);this.require(fnStr);return this.run(["function( data ){","  var origResolve = resolve;","  var res = [];","  ","  resolve = function( val ){","    res.push( val );","  };","  ","  var ret = data."+opts.name+"( _$_$_"+opts.name+(arguments.length>1?", "+JSON.stringify(arg1):"")+" );","  ","  resolve = origResolve;","  resolve( res.length > 0 ? res : ret );","}"].join("\n"))}};util.extend(thdfn,{reduce:defineFnal({name:"reduce"}),reduceRight:defineFnal({name:"reduceRight"}),map:defineFnal({name:"map"})});var fn=thdfn;fn.promise=fn.run;fn.terminate=fn.halt=fn.stop;fn.include=fn.require;util.extend(thdfn,{on:define.on(),one:define.on({unbindSelfOnTrigger:true}),off:define.off(),trigger:define.trigger()});define.eventAliasesOn(thdfn);module.exports=Thread}).call(this,"/node_modules/cytoscape/src")},{"./define":75,"./event":76,"./is":114,"./promise":117,"./util":131,"./window":138,child_process:200,path:202}],130:[function(require,module,exports){"use strict";var is=require("../is");module.exports={hex2tuple:function(hex){if(!(hex.length===4||hex.length===7)||hex[0]!=="#"){return}var shortHex=hex.length===4;var r,g,b;var base=16;if(shortHex){r=parseInt(hex[1]+hex[1],base);g=parseInt(hex[2]+hex[2],base);b=parseInt(hex[3]+hex[3],base)}else{r=parseInt(hex[1]+hex[2],base);g=parseInt(hex[3]+hex[4],base);b=parseInt(hex[5]+hex[6],base)}return[r,g,b]},hsl2tuple:function(hsl){var ret;var h,s,l,a,r,g,b;function hue2rgb(p,q,t){if(t<0)t+=1;if(t>1)t-=1;if(t<1/6)return p+(q-p)*6*t;if(t<1/2)return q;if(t<2/3)return p+(q-p)*(2/3-t)*6;return p}var m=new RegExp("^"+this.regex.hsla+"$").exec(hsl);if(m){h=parseInt(m[1]);if(h<0){h=(360- -1*h%360)%360}else if(h>360){h=h%360}h/=360;s=parseFloat(m[2]);if(s<0||s>100){return}s=s/100;l=parseFloat(m[3]);if(l<0||l>100){return}l=l/100;a=m[4];if(a!==undefined){a=parseFloat(a);if(a<0||a>1){return}}if(s===0){r=g=b=Math.round(l*255)}else{var q=l<.5?l*(1+s):l+s-l*s;var p=2*l-q;r=Math.round(255*hue2rgb(p,q,h+1/3));g=Math.round(255*hue2rgb(p,q,h));b=Math.round(255*hue2rgb(p,q,h-1/3))}ret=[r,g,b,a]}return ret},rgb2tuple:function(rgb){var ret;var m=new RegExp("^"+this.regex.rgba+"$").exec(rgb);if(m){ret=[];var isPct=[];for(var i=1;i<=3;i++){var channel=m[i];if(channel[channel.length-1]==="%"){isPct[i]=true}channel=parseFloat(channel);if(isPct[i]){channel=channel/100*255}if(channel<0||channel>255){return}ret.push(Math.floor(channel))}var atLeastOneIsPct=isPct[1]||isPct[2]||isPct[3];var allArePct=isPct[1]&&isPct[2]&&isPct[3];if(atLeastOneIsPct&&!allArePct){return}var alpha=m[4];if(alpha!==undefined){alpha=parseFloat(alpha);if(alpha<0||alpha>1){return}ret.push(alpha)}}return ret},colorname2tuple:function(color){return this.colors[color.toLowerCase()]},color2tuple:function(color){return(is.array(color)?color:null)||this.colorname2tuple(color)||this.hex2tuple(color)||this.rgb2tuple(color)||this.hsl2tuple(color)},colors:{transparent:[0,0,0,0],aliceblue:[240,248,255],antiquewhite:[250,235,215],aqua:[0,255,255],aquamarine:[127,255,212],azure:[240,255,255],beige:[245,245,220],bisque:[255,228,196],black:[0,0,0],blanchedalmond:[255,235,205],blue:[0,0,255],blueviolet:[138,43,226],brown:[165,42,42],burlywood:[222,184,135],cadetblue:[95,158,160],chartreuse:[127,255,0],chocolate:[210,105,30],coral:[255,127,80],cornflowerblue:[100,149,237],cornsilk:[255,248,220],crimson:[220,20,60],cyan:[0,255,255],darkblue:[0,0,139],darkcyan:[0,139,139],darkgoldenrod:[184,134,11],darkgray:[169,169,169],darkgreen:[0,100,0],darkgrey:[169,169,169],darkkhaki:[189,183,107],darkmagenta:[139,0,139],darkolivegreen:[85,107,47],darkorange:[255,140,0],darkorchid:[153,50,204],darkred:[139,0,0],darksalmon:[233,150,122],darkseagreen:[143,188,143],darkslateblue:[72,61,139],darkslategray:[47,79,79],darkslategrey:[47,79,79],darkturquoise:[0,206,209],darkviolet:[148,0,211],deeppink:[255,20,147],deepskyblue:[0,191,255],dimgray:[105,105,105],dimgrey:[105,105,105],dodgerblue:[30,144,255],firebrick:[178,34,34],floralwhite:[255,250,240],forestgreen:[34,139,34],fuchsia:[255,0,255],gainsboro:[220,220,220],ghostwhite:[248,248,255],gold:[255,215,0],goldenrod:[218,165,32],gray:[128,128,128],grey:[128,128,128],green:[0,128,0],greenyellow:[173,255,47],honeydew:[240,255,240],hotpink:[255,105,180],indianred:[205,92,92],indigo:[75,0,130],ivory:[255,255,240],khaki:[240,230,140],lavender:[230,230,250],lavenderblush:[255,240,245],lawngreen:[124,252,0],lemonchiffon:[255,250,205],lightblue:[173,216,230],lightcoral:[240,128,128],lightcyan:[224,255,255],lightgoldenrodyellow:[250,250,210],lightgray:[211,211,211],lightgreen:[144,238,144],lightgrey:[211,211,211],lightpink:[255,182,193],lightsalmon:[255,160,122],lightseagreen:[32,178,170],lightskyblue:[135,206,250],lightslategray:[119,136,153],lightslategrey:[119,136,153],lightsteelblue:[176,196,222],lightyellow:[255,255,224],lime:[0,255,0],limegreen:[50,205,50],linen:[250,240,230],magenta:[255,0,255],maroon:[128,0,0],mediumaquamarine:[102,205,170],mediumblue:[0,0,205],mediumorchid:[186,85,211],mediumpurple:[147,112,219],mediumseagreen:[60,179,113],mediumslateblue:[123,104,238],mediumspringgreen:[0,250,154],mediumturquoise:[72,209,204],mediumvioletred:[199,21,133],midnightblue:[25,25,112],mintcream:[245,255,250],mistyrose:[255,228,225],moccasin:[255,228,181],navajowhite:[255,222,173],navy:[0,0,128],oldlace:[253,245,230],olive:[128,128,0],olivedrab:[107,142,35],orange:[255,165,0],orangered:[255,69,0],orchid:[218,112,214],palegoldenrod:[238,232,170],palegreen:[152,251,152],paleturquoise:[175,238,238],palevioletred:[219,112,147],papayawhip:[255,239,213],peachpuff:[255,218,185],peru:[205,133,63],pink:[255,192,203],plum:[221,160,221],powderblue:[176,224,230],purple:[128,0,128],red:[255,0,0],rosybrown:[188,143,143],royalblue:[65,105,225],saddlebrown:[139,69,19],salmon:[250,128,114],sandybrown:[244,164,96],seagreen:[46,139,87],seashell:[255,245,238],sienna:[160,82,45],silver:[192,192,192],skyblue:[135,206,235],slateblue:[106,90,205],slategray:[112,128,144],slategrey:[112,128,144],snow:[255,250,250],springgreen:[0,255,127],steelblue:[70,130,180],tan:[210,180,140],teal:[0,128,128],thistle:[216,191,216],tomato:[255,99,71],turquoise:[64,224,208],violet:[238,130,238],wheat:[245,222,179],white:[255,255,255],whitesmoke:[245,245,245],yellow:[255,255,0],yellowgreen:[154,205,50]}}},{"../is":114}],131:[function(require,module,exports){"use strict";var is=require("../is");var math=require("../math");var util={trueify:function(){return true},falsify:function(){return false},zeroify:function(){return 0},noop:function(){},error:function(msg){if(console.error){console.error.apply(console,arguments);if(console.trace){console.trace()}}else{console.log.apply(console,arguments);if(console.trace){console.trace()}}},clone:function(obj){return this.extend({},obj)},copy:function(obj){if(obj==null){return obj}if(is.array(obj)){return obj.slice()}else if(is.plainObject(obj)){return this.clone(obj)}else{return obj}},uuid:function(a,b){for(b=a="";a++<36;b+=a*51&52?(a^15?8^Math.random()*(a^20?16:4):4).toString(16):"-");return b}};util.makeBoundingBox=math.makeBoundingBox.bind(math);util._staticEmptyObject={};util.staticEmptyObject=function(){return util._staticEmptyObject};util.extend=Object.assign!=null?Object.assign:function(tgt){var args=arguments;for(var i=1;i<args.length;i++){var obj=args[i];if(!obj){continue}var keys=Object.keys(obj);for(var j=0;j<keys.length;j++){var k=keys[j];tgt[k]=obj[k]}}return tgt};util.default=function(val,def){if(val===undefined){return def}else{return val}};util.removeFromArray=function(arr,ele,manyCopies){for(var i=arr.length;i>=0;i--){if(arr[i]===ele){arr.splice(i,1);if(!manyCopies){break}}}};util.clearArray=function(arr){arr.splice(0,arr.length)};util.getPrefixedProperty=function(obj,propName,prefix){if(prefix){propName=this.prependCamel(prefix,propName)}return obj[propName]};util.setPrefixedProperty=function(obj,propName,prefix,value){if(prefix){propName=this.prependCamel(prefix,propName)}obj[propName]=value};[require("./colors"),require("./maps"),{memoize:require("./memoize")},require("./regex"),require("./strings"),require("./timing")].forEach(function(req){util.extend(util,req)});module.exports=util},{"../is":114,"../math":116,"./colors":130,"./maps":132,"./memoize":133,"./regex":134,"./strings":135,"./timing":136}],132:[function(require,module,exports){"use strict";var is=require("../is");module.exports={mapEmpty:function(map){var empty=true;if(map!=null){return Object.keys(map).length===0}return empty},pushMap:function(options){var array=this.getMap(options);if(array==null){this.setMap(this.extend({},options,{value:[options.value]}))}else{array.push(options.value)}},setMap:function(options){var obj=options.map;var key;var keys=options.keys;var l=keys.length;for(var i=0;i<l;i++){var key=keys[i];if(is.plainObject(key)){this.error("Tried to set map with object key")}if(i<keys.length-1){if(obj[key]==null){obj[key]={}}obj=obj[key]}else{obj[key]=options.value}}},getMap:function(options){var obj=options.map;var keys=options.keys;var l=keys.length;for(var i=0;i<l;i++){var key=keys[i];if(is.plainObject(key)){this.error("Tried to get map with object key")}obj=obj[key];if(obj==null){return obj}}return obj},deleteMap:function(options){var obj=options.map;var keys=options.keys;var l=keys.length;var keepChildren=options.keepChildren;for(var i=0;i<l;i++){var key=keys[i];if(is.plainObject(key)){this.error("Tried to delete map with object key")}var lastKey=i===options.keys.length-1;if(lastKey){if(keepChildren){var children=Object.keys(obj);for(var j=0;j<children.length;j++){var child=children[j];if(!keepChildren[child]){obj[child]=undefined}}}else{obj[key]=undefined}}else{obj=obj[key]}}}}},{"../is":114}],133:[function(require,module,exports){"use strict";module.exports=function memoize(fn,keyFn){if(!keyFn){keyFn=function(){if(arguments.length===1){return arguments[0]}else if(arguments.length===0){return"undefined"}var args=[];for(var i=0;i<arguments.length;i++){args.push(arguments[i])}return args.join("$")}}var memoizedFn=function(){var self=this;var args=arguments;var ret;var k=keyFn.apply(self,args);var cache=memoizedFn.cache;if(!(ret=cache[k])){ret=cache[k]=fn.apply(self,args)}return ret};memoizedFn.cache={};return memoizedFn}},{}],134:[function(require,module,exports){"use strict";var number="(?:[-+]?(?:(?:\\d+|\\d*\\.\\d+)(?:[Ee][+-]?\\d+)?))";var rgba="rgb[a]?\\(("+number+"[%]?)\\s*,\\s*("+number+"[%]?)\\s*,\\s*("+number+"[%]?)(?:\\s*,\\s*("+number+"))?\\)";var rgbaNoBackRefs="rgb[a]?\\((?:"+number+"[%]?)\\s*,\\s*(?:"+number+"[%]?)\\s*,\\s*(?:"+number+"[%]?)(?:\\s*,\\s*(?:"+number+"))?\\)";var hsla="hsl[a]?\\(("+number+")\\s*,\\s*("+number+"[%])\\s*,\\s*("+number+"[%])(?:\\s*,\\s*("+number+"))?\\)";var hslaNoBackRefs="hsl[a]?\\((?:"+number+")\\s*,\\s*(?:"+number+"[%])\\s*,\\s*(?:"+number+"[%])(?:\\s*,\\s*(?:"+number+"))?\\)";var hex3="\\#[0-9a-fA-F]{3}";var hex6="\\#[0-9a-fA-F]{6}";module.exports={regex:{number:number,rgba:rgba,rgbaNoBackRefs:rgbaNoBackRefs,hsla:hsla,hslaNoBackRefs:hslaNoBackRefs,hex3:hex3,hex6:hex6}}},{}],135:[function(require,module,exports){"use strict";var memoize=require("./memoize");var is=require("../is");module.exports={camel2dash:memoize(function(str){return str.replace(/([A-Z])/g,function(v){return"-"+v.toLowerCase()})}),dash2camel:memoize(function(str){return str.replace(/(-\w)/g,function(v){return v[1].toUpperCase()})}),prependCamel:memoize(function(prefix,str){return prefix+str[0].toUpperCase()+str.substring(1)},function(prefix,str){return prefix+"$"+str}),capitalize:function(str){if(is.emptyString(str)){return str}return str.charAt(0).toUpperCase()+str.substring(1)}}},{"../is":114,"./memoize":133}],136:[function(require,module,exports){"use strict";var window=require("../window");var is=require("../is");var performance=window?window.performance:null;var util={};var raf=!window?null:window.requestAnimationFrame||window.mozRequestAnimationFrame||window.webkitRequestAnimationFrame||window.msRequestAnimationFrame;raf=raf||function(fn){if(fn){setTimeout(function(){fn(pnow())},1e3/60)}};util.requestAnimationFrame=function(fn){raf(fn)};var pnow=performance&&performance.now?function(){return performance.now()}:function(){return Date.now()};util.performanceNow=pnow;util.throttle=function(func,wait,options){var leading=true,trailing=true;if(options===false){leading=false}else if(is.plainObject(options)){leading="leading"in options?options.leading:leading;trailing="trailing"in options?options.trailing:trailing}options=options||{};options.leading=leading;options.maxWait=wait;options.trailing=trailing;return util.debounce(func,wait,options)};util.now=function(){return Date.now()};util.debounce=function(func,wait,options){var util=this;var args,maxTimeoutId,result,stamp,thisArg,timeoutId,trailingCall,lastCalled=0,maxWait=false,trailing=true;if(!is.fn(func)){return}wait=Math.max(0,wait)||0;if(options===true){var leading=true;trailing=false}else if(is.plainObject(options)){leading=options.leading;maxWait="maxWait"in options&&(Math.max(wait,options.maxWait)||0);trailing="trailing"in options?options.trailing:trailing}var delayed=function(){var remaining=wait-(util.now()-stamp);if(remaining<=0){if(maxTimeoutId){clearTimeout(maxTimeoutId)}var isCalled=trailingCall;maxTimeoutId=timeoutId=trailingCall=undefined;if(isCalled){lastCalled=util.now();result=func.apply(thisArg,args);if(!timeoutId&&!maxTimeoutId){args=thisArg=null}}}else{timeoutId=setTimeout(delayed,remaining)}};var maxDelayed=function(){if(timeoutId){clearTimeout(timeoutId)}maxTimeoutId=timeoutId=trailingCall=undefined;if(trailing||maxWait!==wait){lastCalled=util.now();result=func.apply(thisArg,args);if(!timeoutId&&!maxTimeoutId){args=thisArg=null}}};return function(){args=arguments;stamp=util.now();thisArg=this;trailingCall=trailing&&(timeoutId||!leading);if(maxWait===false){var leadingCall=leading&&!timeoutId}else{if(!maxTimeoutId&&!leading){lastCalled=stamp}var remaining=maxWait-(stamp-lastCalled),isCalled=remaining<=0;if(isCalled){if(maxTimeoutId){maxTimeoutId=clearTimeout(maxTimeoutId)}lastCalled=stamp;result=func.apply(thisArg,args)}else if(!maxTimeoutId){maxTimeoutId=setTimeout(maxDelayed,remaining)}}if(isCalled&&timeoutId){timeoutId=clearTimeout(timeoutId)}else if(!timeoutId&&wait!==maxWait){timeoutId=setTimeout(delayed,wait)}if(leadingCall){isCalled=true;result=func.apply(thisArg,args)}if(isCalled&&!timeoutId&&!maxTimeoutId){args=thisArg=null}return result}};module.exports=util},{"../is":114,"../window":138}],137:[function(require,module,exports){module.exports="2.7.11"},{}],138:[function(require,module,exports){module.exports=typeof window==="undefined"?null:window},{}],139:[function(require,module,exports){(function(global,factory){if(typeof module==="object"&&typeof module.exports==="object"){module.exports=global.document?factory(global,true):function(w){if(!w.document){throw new Error("jQuery requires a window with a document")}return factory(w)}}else{factory(global)}})(typeof window!=="undefined"?window:this,function(window,noGlobal){var arr=[];var document=window.document;var slice=arr.slice;var concat=arr.concat;var push=arr.push;var indexOf=arr.indexOf;var class2type={};var toString=class2type.toString;var hasOwn=class2type.hasOwnProperty;var support={};var version="2.2.4",jQuery=function(selector,context){return new jQuery.fn.init(selector,context)},rtrim=/^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g,rmsPrefix=/^-ms-/,rdashAlpha=/-([\da-z])/gi,fcamelCase=function(all,letter){return letter.toUpperCase()};jQuery.fn=jQuery.prototype={jquery:version,constructor:jQuery,selector:"",length:0,toArray:function(){return slice.call(this)},get:function(num){return num!=null?num<0?this[num+this.length]:this[num]:slice.call(this)},pushStack:function(elems){var ret=jQuery.merge(this.constructor(),elems);ret.prevObject=this;ret.context=this.context;return ret},each:function(callback){return jQuery.each(this,callback)},map:function(callback){return this.pushStack(jQuery.map(this,function(elem,i){return callback.call(elem,i,elem)}))},slice:function(){return this.pushStack(slice.apply(this,arguments))},first:function(){return this.eq(0)},last:function(){return this.eq(-1)},eq:function(i){var len=this.length,j=+i+(i<0?len:0);return this.pushStack(j>=0&&j<len?[this[j]]:[])},end:function(){return this.prevObject||this.constructor()},push:push,sort:arr.sort,splice:arr.splice};jQuery.extend=jQuery.fn.extend=function(){var options,name,src,copy,copyIsArray,clone,target=arguments[0]||{},i=1,length=arguments.length,deep=false;if(typeof target==="boolean"){deep=target;target=arguments[i]||{};i++}if(typeof target!=="object"&&!jQuery.isFunction(target)){target={}}if(i===length){target=this;i--}for(;i<length;i++){if((options=arguments[i])!=null){for(name in options){src=target[name];copy=options[name];if(target===copy){continue}if(deep&&copy&&(jQuery.isPlainObject(copy)||(copyIsArray=jQuery.isArray(copy)))){if(copyIsArray){copyIsArray=false;clone=src&&jQuery.isArray(src)?src:[]}else{clone=src&&jQuery.isPlainObject(src)?src:{}}target[name]=jQuery.extend(deep,clone,copy)}else if(copy!==undefined){target[name]=copy}}}}return target};jQuery.extend({expando:"jQuery"+(version+Math.random()).replace(/\D/g,""),isReady:true,error:function(msg){throw new Error(msg)},noop:function(){},isFunction:function(obj){return jQuery.type(obj)==="function"},isArray:Array.isArray,isWindow:function(obj){return obj!=null&&obj===obj.window},isNumeric:function(obj){var realStringObj=obj&&obj.toString();return!jQuery.isArray(obj)&&realStringObj-parseFloat(realStringObj)+1>=0},isPlainObject:function(obj){var key;if(jQuery.type(obj)!=="object"||obj.nodeType||jQuery.isWindow(obj)){return false}if(obj.constructor&&!hasOwn.call(obj,"constructor")&&!hasOwn.call(obj.constructor.prototype||{},"isPrototypeOf")){return false}for(key in obj){}return key===undefined||hasOwn.call(obj,key)},isEmptyObject:function(obj){var name;for(name in obj){return false}return true},type:function(obj){if(obj==null){return obj+""}return typeof obj==="object"||typeof obj==="function"?class2type[toString.call(obj)]||"object":typeof obj},globalEval:function(code){var script,indirect=eval;code=jQuery.trim(code);if(code){if(code.indexOf("use strict")===1){script=document.createElement("script");script.text=code;document.head.appendChild(script).parentNode.removeChild(script)}else{indirect(code)}}},camelCase:function(string){return string.replace(rmsPrefix,"ms-").replace(rdashAlpha,fcamelCase)},nodeName:function(elem,name){return elem.nodeName&&elem.nodeName.toLowerCase()===name.toLowerCase()},each:function(obj,callback){var 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hash=window.location&&window.location.hash;return hash&&hash.slice(1)===elem.id},root:function(elem){return elem===docElem},focus:function(elem){return elem===document.activeElement&&(!document.hasFocus||document.hasFocus())&&!!(elem.type||elem.href||~elem.tabIndex)},enabled:function(elem){return elem.disabled===false},disabled:function(elem){return elem.disabled===true},checked:function(elem){var nodeName=elem.nodeName.toLowerCase();return nodeName==="input"&&!!elem.checked||nodeName==="option"&&!!elem.selected},selected:function(elem){if(elem.parentNode){elem.parentNode.selectedIndex}return elem.selected===true},empty:function(elem){for(elem=elem.firstChild;elem;elem=elem.nextSibling){if(elem.nodeType<6){return false}}return true},parent:function(elem){return!Expr.pseudos["empty"](elem)},header:function(elem){return rheader.test(elem.nodeName)},input:function(elem){return rinputs.test(elem.nodeName)},button:function(elem){var name=elem.nodeName.toLowerCase();return name==="input"&&elem.type==="button"||name==="button"},text:function(elem){var attr;return elem.nodeName.toLowerCase()==="input"&&elem.type==="text"&&((attr=elem.getAttribute("type"))==null||attr.toLowerCase()==="text")},first:createPositionalPseudo(function(){return[0]}),last:createPositionalPseudo(function(matchIndexes,length){return[length-1]}),eq:createPositionalPseudo(function(matchIndexes,length,argument){return[argument<0?argument+length:argument]}),even:createPositionalPseudo(function(matchIndexes,length){var i=0;for(;i<length;i+=2){matchIndexes.push(i)}return matchIndexes}),odd:createPositionalPseudo(function(matchIndexes,length){var i=1;for(;i<length;i+=2){matchIndexes.push(i)}return matchIndexes}),lt:createPositionalPseudo(function(matchIndexes,length,argument){var i=argument<0?argument+length:argument;for(;--i>=0;){matchIndexes.push(i)}return matchIndexes}),gt:createPositionalPseudo(function(matchIndexes,length,argument){var i=argument<0?argument+length:argument;for(;++i<length;){matchIndexes.push(i)}return matchIndexes})}};Expr.pseudos["nth"]=Expr.pseudos["eq"];for(i in{radio:true,checkbox:true,file:true,password:true,image:true}){Expr.pseudos[i]=createInputPseudo(i)}for(i in{submit:true,reset:true}){Expr.pseudos[i]=createButtonPseudo(i)}function setFilters(){}setFilters.prototype=Expr.filters=Expr.pseudos;Expr.setFilters=new setFilters;tokenize=Sizzle.tokenize=function(selector,parseOnly){var matched,match,tokens,type,soFar,groups,preFilters,cached=tokenCache[selector+" "];if(cached){return parseOnly?0:cached.slice(0)}soFar=selector;groups=[];preFilters=Expr.preFilter;while(soFar){if(!matched||(match=rcomma.exec(soFar))){if(match){soFar=soFar.slice(match[0].length)||soFar}groups.push(tokens=[])}matched=false;if(match=rcombinators.exec(soFar)){matched=match.shift();tokens.push({value:matched,type:match[0].replace(rtrim," ")});soFar=soFar.slice(matched.length)}for(type in Expr.filter){if((match=matchExpr[type].exec(soFar))&&(!preFilters[type]||(match=preFilters[type](match)))){matched=match.shift();tokens.push({value:matched,type:type,matches:match});soFar=soFar.slice(matched.length)}}if(!matched){break}}return parseOnly?soFar.length:soFar?Sizzle.error(selector):tokenCache(selector,groups).slice(0)};function toSelector(tokens){var i=0,len=tokens.length,selector="";for(;i<len;i++){selector+=tokens[i].value}return selector}function addCombinator(matcher,combinator,base){var dir=combinator.dir,checkNonElements=base&&dir==="parentNode",doneName=done++;return combinator.first?function(elem,context,xml){while(elem=elem[dir]){if(elem.nodeType===1||checkNonElements){return matcher(elem,context,xml)}}}:function(elem,context,xml){var oldCache,uniqueCache,outerCache,newCache=[dirruns,doneName];if(xml){while(elem=elem[dir]){if(elem.nodeType===1||checkNonElements){if(matcher(elem,context,xml)){return true}}}}else{while(elem=elem[dir]){if(elem.nodeType===1||checkNonElements){outerCache=elem[expando]||(elem[expando]={});uniqueCache=outerCache[elem.uniqueID]||(outerCache[elem.uniqueID]={});if((oldCache=uniqueCache[dir])&&oldCache[0]===dirruns&&oldCache[1]===doneName){return newCache[2]=oldCache[2]}else{uniqueCache[dir]=newCache;if(newCache[2]=matcher(elem,context,xml)){return true}}}}}}}function elementMatcher(matchers){return matchers.length>1?function(elem,context,xml){var i=matchers.length;while(i--){if(!matchers[i](elem,context,xml)){return false}}return true}:matchers[0]}function multipleContexts(selector,contexts,results){var i=0,len=contexts.length;for(;i<len;i++){Sizzle(selector,contexts[i],results)}return results}function condense(unmatched,map,filter,context,xml){var elem,newUnmatched=[],i=0,len=unmatched.length,mapped=map!=null;for(;i<len;i++){if(elem=unmatched[i]){if(!filter||filter(elem,context,xml)){newUnmatched.push(elem);if(mapped){map.push(i)}}}}return newUnmatched}function setMatcher(preFilter,selector,matcher,postFilter,postFinder,postSelector){if(postFilter&&!postFilter[expando]){postFilter=setMatcher(postFilter)}if(postFinder&&!postFinder[expando]){postFinder=setMatcher(postFinder,postSelector)}return markFunction(function(seed,results,context,xml){var temp,i,elem,preMap=[],postMap=[],preexisting=results.length,elems=seed||multipleContexts(selector||"*",context.nodeType?[context]:context,[]),matcherIn=preFilter&&(seed||!selector)?condense(elems,preMap,preFilter,context,xml):elems,matcherOut=matcher?postFinder||(seed?preFilter:preexisting||postFilter)?[]:results:matcherIn;if(matcher){matcher(matcherIn,matcherOut,context,xml)}if(postFilter){temp=condense(matcherOut,postMap);postFilter(temp,[],context,xml);i=temp.length;while(i--){if(elem=temp[i]){matcherOut[postMap[i]]=!(matcherIn[postMap[i]]=elem)}}}if(seed){if(postFinder||preFilter){if(postFinder){temp=[];i=matcherOut.length;while(i--){if(elem=matcherOut[i]){temp.push(matcherIn[i]=elem)}}postFinder(null,matcherOut=[],temp,xml)}i=matcherOut.length;while(i--){if((elem=matcherOut[i])&&(temp=postFinder?indexOf(seed,elem):preMap[i])>-1){seed[temp]=!(results[temp]=elem)}}}}else{matcherOut=condense(matcherOut===results?matcherOut.splice(preexisting,matcherOut.length):matcherOut);if(postFinder){postFinder(null,results,matcherOut,xml)}else{push.apply(results,matcherOut)}}})}function matcherFromTokens(tokens){var checkContext,matcher,j,len=tokens.length,leadingRelative=Expr.relative[tokens[0].type],implicitRelative=leadingRelative||Expr.relative[" "],i=leadingRelative?1:0,matchContext=addCombinator(function(elem){return elem===checkContext},implicitRelative,true),matchAnyContext=addCombinator(function(elem){return indexOf(checkContext,elem)>-1},implicitRelative,true),matchers=[function(elem,context,xml){var ret=!leadingRelative&&(xml||context!==outermostContext)||((checkContext=context).nodeType?matchContext(elem,context,xml):matchAnyContext(elem,context,xml));checkContext=null;return ret}];for(;i<len;i++){if(matcher=Expr.relative[tokens[i].type]){matchers=[addCombinator(elementMatcher(matchers),matcher)]}else{matcher=Expr.filter[tokens[i].type].apply(null,tokens[i].matches);if(matcher[expando]){j=++i;for(;j<len;j++){if(Expr.relative[tokens[j].type]){break}}return setMatcher(i>1&&elementMatcher(matchers),i>1&&toSelector(tokens.slice(0,i-1).concat({value:tokens[i-2].type===" "?"*":""})).replace(rtrim,"$1"),matcher,i<j&&matcherFromTokens(tokens.slice(i,j)),j<len&&matcherFromTokens(tokens=tokens.slice(j)),j<len&&toSelector(tokens))}matchers.push(matcher)}}return elementMatcher(matchers)}function matcherFromGroupMatchers(elementMatchers,setMatchers){var bySet=setMatchers.length>0,byElement=elementMatchers.length>0,superMatcher=function(seed,context,xml,results,outermost){var elem,j,matcher,matchedCount=0,i="0",unmatched=seed&&[],setMatched=[],contextBackup=outermostContext,elems=seed||byElement&&Expr.find["TAG"]("*",outermost),dirrunsUnique=dirruns+=contextBackup==null?1:Math.random()||.1,len=elems.length;if(outermost){outermostContext=context===document||context||outermost}for(;i!==len&&(elem=elems[i])!=null;i++){if(byElement&&elem){j=0;if(!context&&elem.ownerDocument!==document){setDocument(elem);xml=!documentIsHTML}while(matcher=elementMatchers[j++]){if(matcher(elem,context||document,xml)){results.push(elem);break}}if(outermost){dirruns=dirrunsUnique}}if(bySet){if(elem=!matcher&&elem){matchedCount--}if(seed){unmatched.push(elem)}}}matchedCount+=i;if(bySet&&i!==matchedCount){j=0;while(matcher=setMatchers[j++]){matcher(unmatched,setMatched,context,xml)}if(seed){if(matchedCount>0){while(i--){if(!(unmatched[i]||setMatched[i])){setMatched[i]=pop.call(results)}}}setMatched=condense(setMatched)}push.apply(results,setMatched);if(outermost&&!seed&&setMatched.length>0&&matchedCount+setMatchers.length>1){Sizzle.uniqueSort(results)}}if(outermost){dirruns=dirrunsUnique;outermostContext=contextBackup}return unmatched};return bySet?markFunction(superMatcher):superMatcher}compile=Sizzle.compile=function(selector,match){var i,setMatchers=[],elementMatchers=[],cached=compilerCache[selector+" "];if(!cached){if(!match){match=tokenize(selector)}i=match.length;while(i--){cached=matcherFromTokens(match[i]);if(cached[expando]){setMatchers.push(cached)}else{elementMatchers.push(cached)}}cached=compilerCache(selector,matcherFromGroupMatchers(elementMatchers,setMatchers));cached.selector=selector}return cached};select=Sizzle.select=function(selector,context,results,seed){var i,tokens,token,type,find,compiled=typeof selector==="function"&&selector,match=!seed&&tokenize(selector=compiled.selector||selector);results=results||[];if(match.length===1){tokens=match[0]=match[0].slice(0);if(tokens.length>2&&(token=tokens[0]).type==="ID"&&support.getById&&context.nodeType===9&&documentIsHTML&&Expr.relative[tokens[1].type]){context=(Expr.find["ID"](token.matches[0].replace(runescape,funescape),context)||[])[0];if(!context){return results}else if(compiled){context=context.parentNode}selector=selector.slice(tokens.shift().value.length)}i=matchExpr["needsContext"].test(selector)?0:tokens.length;while(i--){token=tokens[i];if(Expr.relative[type=token.type]){break}if(find=Expr.find[type]){if(seed=find(token.matches[0].replace(runescape,funescape),rsibling.test(tokens[0].type)&&testContext(context.parentNode)||context)){tokens.splice(i,1);selector=seed.length&&toSelector(tokens);if(!selector){push.apply(results,seed);return results}break}}}}(compiled||compile(selector,match))(seed,context,!documentIsHTML,results,!context||rsibling.test(selector)&&testContext(context.parentNode)||context);return results};support.sortStable=expando.split("").sort(sortOrder).join("")===expando;support.detectDuplicates=!!hasDuplicate;setDocument();support.sortDetached=assert(function(div1){return div1.compareDocumentPosition(document.createElement("div"))&1});if(!assert(function(div){div.innerHTML="<a href='#'></a>";return div.firstChild.getAttribute("href")==="#"})){addHandle("type|href|height|width",function(elem,name,isXML){if(!isXML){return elem.getAttribute(name,name.toLowerCase()==="type"?1:2)}})}if(!support.attributes||!assert(function(div){div.innerHTML="<input/>";div.firstChild.setAttribute("value","");return div.firstChild.getAttribute("value")===""})){addHandle("value",function(elem,name,isXML){if(!isXML&&elem.nodeName.toLowerCase()==="input"){return elem.defaultValue}})}if(!assert(function(div){return div.getAttribute("disabled")==null})){addHandle(booleans,function(elem,name,isXML){var val;if(!isXML){return elem[name]===true?name.toLowerCase():(val=elem.getAttributeNode(name))&&val.specified?val.value:null}})}return Sizzle}(window);jQuery.find=Sizzle;jQuery.expr=Sizzle.selectors;jQuery.expr[":"]=jQuery.expr.pseudos;jQuery.uniqueSort=jQuery.unique=Sizzle.uniqueSort;jQuery.text=Sizzle.getText;jQuery.isXMLDoc=Sizzle.isXML;jQuery.contains=Sizzle.contains;var dir=function(elem,dir,until){var matched=[],truncate=until!==undefined;while((elem=elem[dir])&&elem.nodeType!==9){if(elem.nodeType===1){if(truncate&&jQuery(elem).is(until)){break}matched.push(elem)}}return matched};var siblings=function(n,elem){var matched=[];for(;n;n=n.nextSibling){if(n.nodeType===1&&n!==elem){matched.push(n)}}return matched};var rneedsContext=jQuery.expr.match.needsContext;var rsingleTag=/^<([\w-]+)\s*\/?>(?:<\/\1>|)$/;var risSimple=/^.[^:#\[\.,]*$/;function winnow(elements,qualifier,not){if(jQuery.isFunction(qualifier)){return jQuery.grep(elements,function(elem,i){return!!qualifier.call(elem,i,elem)!==not})}if(qualifier.nodeType){return jQuery.grep(elements,function(elem){return elem===qualifier!==not})}if(typeof qualifier==="string"){if(risSimple.test(qualifier)){return jQuery.filter(qualifier,elements,not)}qualifier=jQuery.filter(qualifier,elements)}return jQuery.grep(elements,function(elem){return indexOf.call(qualifier,elem)>-1!==not})}jQuery.filter=function(expr,elems,not){var elem=elems[0];if(not){expr=":not("+expr+")"}return elems.length===1&&elem.nodeType===1?jQuery.find.matchesSelector(elem,expr)?[elem]:[]:jQuery.find.matches(expr,jQuery.grep(elems,function(elem){return elem.nodeType===1}))};jQuery.fn.extend({find:function(selector){var i,len=this.length,ret=[],self=this;if(typeof selector!=="string"){return this.pushStack(jQuery(selector).filter(function(){for(i=0;i<len;i++){if(jQuery.contains(self[i],this)){return true}}}))}for(i=0;i<len;i++){jQuery.find(selector,self[i],ret)}ret=this.pushStack(len>1?jQuery.unique(ret):ret);ret.selector=this.selector?this.selector+" "+selector:selector;return ret},filter:function(selector){return this.pushStack(winnow(this,selector||[],false))},not:function(selector){return this.pushStack(winnow(this,selector||[],true))},is:function(selector){return!!winnow(this,typeof selector==="string"&&rneedsContext.test(selector)?jQuery(selector):selector||[],false).length}});var rootjQuery,rquickExpr=/^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]*))$/,init=jQuery.fn.init=function(selector,context,root){var match,elem;if(!selector){return this}root=root||rootjQuery;if(typeof selector==="string"){if(selector[0]==="<"&&selector[selector.length-1]===">"&&selector.length>=3){match=[null,selector,null]}else{match=rquickExpr.exec(selector)}if(match&&(match[1]||!context)){if(match[1]){context=context instanceof jQuery?context[0]:context;jQuery.merge(this,jQuery.parseHTML(match[1],context&&context.nodeType?context.ownerDocument||context:document,true));if(rsingleTag.test(match[1])&&jQuery.isPlainObject(context)){for(match in context){if(jQuery.isFunction(this[match])){this[match](context[match])}else{this.attr(match,context[match])}}}return this}else{elem=document.getElementById(match[2]);if(elem&&elem.parentNode){this.length=1;this[0]=elem}this.context=document;this.selector=selector;return this}}else if(!context||context.jquery){return(context||root).find(selector)}else{return this.constructor(context).find(selector)}}else if(selector.nodeType){this.context=this[0]=selector;this.length=1;return this}else if(jQuery.isFunction(selector)){return root.ready!==undefined?root.ready(selector):selector(jQuery)}if(selector.selector!==undefined){this.selector=selector.selector;this.context=selector.context}return jQuery.makeArray(selector,this)};init.prototype=jQuery.fn;rootjQuery=jQuery(document);var rparentsprev=/^(?:parents|prev(?:Until|All))/,guaranteedUnique={children:true,contents:true,next:true,prev:true};jQuery.fn.extend({has:function(target){var targets=jQuery(target,this),l=targets.length;return this.filter(function(){var i=0;for(;i<l;i++){if(jQuery.contains(this,targets[i])){return true}}})},closest:function(selectors,context){var cur,i=0,l=this.length,matched=[],pos=rneedsContext.test(selectors)||typeof selectors!=="string"?jQuery(selectors,context||this.context):0;
 
@@ -41,9 +41,12 @@ this.displacementY=layout.coolingFactor*layout.maxNodeDisplacement*IMath.sign(th
 
 }if(!(graph==this.rootGraph||graph.parent!=null&&graph.parent.graphManager==this)){throw"Invalid parent node!"}var edgesToBeRemoved=[];edgesToBeRemoved=edgesToBeRemoved.concat(graph.getEdges());var edge;var s=edgesToBeRemoved.length;for(var i=0;i<s;i++){edge=edgesToBeRemoved[i];graph.remove(edge)}var nodesToBeRemoved=[];nodesToBeRemoved=nodesToBeRemoved.concat(graph.getNodes());var node;s=nodesToBeRemoved.length;for(var i=0;i<s;i++){node=nodesToBeRemoved[i];graph.remove(node)}if(graph==this.rootGraph){this.setRootGraph(null)}var index=this.graphs.indexOf(graph);this.graphs.splice(index,1);graph.parent=null}else if(lObj instanceof LEdge){edge=lObj;if(edge==null){throw"Edge is null!"}if(!edge.isInterGraph){throw"Not an inter-graph edge!"}if(!(edge.source!=null&&edge.target!=null)){throw"Source and/or target is null!"}if(!(edge.source.edges.indexOf(edge)!=-1&&edge.target.edges.indexOf(edge)!=-1)){throw"Source and/or target doesn't know this edge!"}var index=edge.source.edges.indexOf(edge);edge.source.edges.splice(index,1);index=edge.target.edges.indexOf(edge);edge.target.edges.splice(index,1);if(!(edge.source.owner!=null&&edge.source.owner.getGraphManager()!=null)){throw"Edge owner graph or owner graph manager is null!"}if(edge.source.owner.getGraphManager().edges.indexOf(edge)==-1){throw"Not in owner graph manager's edge list!"}var index=edge.source.owner.getGraphManager().edges.indexOf(edge);edge.source.owner.getGraphManager().edges.splice(index,1)}};LGraphManager.prototype.updateBounds=function(){this.rootGraph.updateBounds(true)};LGraphManager.prototype.getGraphs=function(){return this.graphs};LGraphManager.prototype.getAllNodes=function(){if(this.allNodes==null){var nodeList=[];var graphs=this.getGraphs();var s=graphs.length;for(var i=0;i<s;i++){nodeList=nodeList.concat(graphs[i].getNodes())}this.allNodes=nodeList}return this.allNodes};LGraphManager.prototype.resetAllNodes=function(){this.allNodes=null};LGraphManager.prototype.resetAllEdges=function(){this.allEdges=null};LGraphManager.prototype.resetAllNodesToApplyGravitation=function(){this.allNodesToApplyGravitation=null};LGraphManager.prototype.getAllEdges=function(){if(this.allEdges==null){var edgeList=[];var graphs=this.getGraphs();var s=graphs.length;for(var i=0;i<graphs.length;i++){edgeList=edgeList.concat(graphs[i].getEdges())}edgeList=edgeList.concat(this.edges);this.allEdges=edgeList}return this.allEdges};LGraphManager.prototype.getAllNodesToApplyGravitation=function(){return this.allNodesToApplyGravitation};LGraphManager.prototype.setAllNodesToApplyGravitation=function(nodeList){if(this.allNodesToApplyGravitation!=null){throw"assert failed"}this.allNodesToApplyGravitation=nodeList};LGraphManager.prototype.getRoot=function(){return this.rootGraph};LGraphManager.prototype.setRootGraph=function(graph){if(graph.getGraphManager()!=this){throw"Root not in this graph mgr!"}this.rootGraph=graph;if(graph.parent==null){graph.parent=this.layout.newNode("Root node")}};LGraphManager.prototype.getLayout=function(){return this.layout};LGraphManager.prototype.isOneAncestorOfOther=function(firstNode,secondNode){if(!(firstNode!=null&&secondNode!=null)){throw"assert failed"}if(firstNode==secondNode){return true}var ownerGraph=firstNode.getOwner();var parentNode;do{parentNode=ownerGraph.getParent();if(parentNode==null){break}if(parentNode==secondNode){return true}ownerGraph=parentNode.getOwner();if(ownerGraph==null){break}}while(true);ownerGraph=secondNode.getOwner();do{parentNode=ownerGraph.getParent();if(parentNode==null){break}if(parentNode==firstNode){return true}ownerGraph=parentNode.getOwner();if(ownerGraph==null){break}}while(true);return false};LGraphManager.prototype.calcLowestCommonAncestors=function(){var edge;var sourceNode;var targetNode;var sourceAncestorGraph;var targetAncestorGraph;var edges=this.getAllEdges();var s=edges.length;for(var i=0;i<s;i++){edge=edges[i];sourceNode=edge.source;targetNode=edge.target;edge.lca=null;edge.sourceInLca=sourceNode;edge.targetInLca=targetNode;if(sourceNode==targetNode){edge.lca=sourceNode.getOwner();continue}sourceAncestorGraph=sourceNode.getOwner();while(edge.lca==null){targetAncestorGraph=targetNode.getOwner();while(edge.lca==null){if(targetAncestorGraph==sourceAncestorGraph){edge.lca=targetAncestorGraph;break}if(targetAncestorGraph==this.rootGraph){break}if(edge.lca!=null){throw"assert failed"}edge.targetInLca=targetAncestorGraph.getParent();targetAncestorGraph=edge.targetInLca.getOwner()}if(sourceAncestorGraph==this.rootGraph){break}if(edge.lca==null){edge.sourceInLca=sourceAncestorGraph.getParent();sourceAncestorGraph=edge.sourceInLca.getOwner()}}if(edge.lca==null){throw"assert failed"}}};LGraphManager.prototype.calcLowestCommonAncestor=function(firstNode,secondNode){if(firstNode==secondNode){return firstNode.getOwner()}var firstOwnerGraph=firstNode.getOwner();do{if(firstOwnerGraph==null){break}var secondOwnerGraph=secondNode.getOwner();do{if(secondOwnerGraph==null){break}if(secondOwnerGraph==firstOwnerGraph){return secondOwnerGraph}secondOwnerGraph=secondOwnerGraph.getParent().getOwner()}while(true);firstOwnerGraph=firstOwnerGraph.getParent().getOwner()}while(true);return firstOwnerGraph};LGraphManager.prototype.calcInclusionTreeDepths=function(graph,depth){if(graph==null&&depth==null){graph=this.rootGraph;depth=1}var node;var nodes=graph.getNodes();var s=nodes.length;for(var i=0;i<s;i++){node=nodes[i];node.inclusionTreeDepth=depth;if(node.child!=null){this.calcInclusionTreeDepths(node.child,depth+1)}}};LGraphManager.prototype.includesInvalidEdge=function(){var edge;var s=this.edges.length;for(var i=0;i<s;i++){edge=this.edges[i];if(this.isOneAncestorOfOther(edge.source,edge.target)){return true}}return false};module.exports=LGraphManager},{}],160:[function(require,module,exports){function LGraphObject(vGraphObject){this.vGraphObject=vGraphObject}module.exports=LGraphObject},{}],161:[function(require,module,exports){var LGraphObject=require("./LGraphObject");var Integer=require("./Integer");var RectangleD=require("./RectangleD");function LNode(gm,loc,size,vNode){if(size==null&&vNode==null){vNode=loc}LGraphObject.call(this,vNode);if(gm.graphManager!=null)gm=gm.graphManager;this.estimatedSize=Integer.MIN_VALUE;this.inclusionTreeDepth=Integer.MAX_VALUE;this.vGraphObject=vNode;this.edges=[];this.graphManager=gm;if(size!=null&&loc!=null)this.rect=new RectangleD(loc.x,loc.y,size.width,size.height);else this.rect=new RectangleD}LNode.prototype=Object.create(LGraphObject.prototype);for(var prop in LGraphObject){LNode[prop]=LGraphObject[prop]}LNode.prototype.getEdges=function(){return this.edges};LNode.prototype.getChild=function(){return this.child};LNode.prototype.getOwner=function(){if(this.owner!=null){if(!(this.owner==null||this.owner.getNodes().indexOf(this)>-1)){throw"assert failed"}}return this.owner};LNode.prototype.getWidth=function(){return this.rect.width};LNode.prototype.setWidth=function(width){this.rect.width=width};LNode.prototype.getHeight=function(){return this.rect.height};LNode.prototype.setHeight=function(height){this.rect.height=height};LNode.prototype.getCenterX=function(){return this.rect.x+this.rect.width/2};LNode.prototype.getCenterY=function(){return this.rect.y+this.rect.height/2};LNode.prototype.getCenter=function(){return new PointD(this.rect.x+this.rect.width/2,this.rect.y+this.rect.height/2)};LNode.prototype.getLocation=function(){return new PointD(this.rect.x,this.rect.y)};LNode.prototype.getRect=function(){return this.rect};LNode.prototype.getDiagonal=function(){return Math.sqrt(this.rect.width*this.rect.width+this.rect.height*this.rect.height)};LNode.prototype.setRect=function(upperLeft,dimension){this.rect.x=upperLeft.x;this.rect.y=upperLeft.y;this.rect.width=dimension.width;this.rect.height=dimension.height};LNode.prototype.setCenter=function(cx,cy){this.rect.x=cx-this.rect.width/2;this.rect.y=cy-this.rect.height/2};LNode.prototype.setLocation=function(x,y){this.rect.x=x;this.rect.y=y};LNode.prototype.moveBy=function(dx,dy){this.rect.x+=dx;this.rect.y+=dy};LNode.prototype.getEdgeListToNode=function(to){var edgeList=[];var edge;for(var obj in this.edges){edge=obj;if(edge.target==to){if(edge.source!=this)throw"Incorrect edge source!";edgeList.push(edge)}}return edgeList};LNode.prototype.getEdgesBetween=function(other){var edgeList=[];var edge;for(var obj in this.edges){edge=this.edges[obj];if(!(edge.source==this||edge.target==this))throw"Incorrect edge source and/or target";if(edge.target==other||edge.source==other){edgeList.push(edge)}}return edgeList};LNode.prototype.getNeighborsList=function(){var neighbors=new HashSet;var edge;for(var obj in this.edges){edge=this.edges[obj];if(edge.source==this){neighbors.add(edge.target)}else{if(!edge.target==this)throw"Incorrect incidency!";neighbors.add(edge.source)}}return neighbors};LNode.prototype.withChildren=function(){var withNeighborsList=[];var childNode;withNeighborsList.push(this);if(this.child!=null){var nodes=this.child.getNodes();for(var i=0;i<nodes.length;i++){childNode=nodes[i];withNeighborsList=withNeighborsList.concat(childNode.withChildren())}}return withNeighborsList};LNode.prototype.getEstimatedSize=function(){if(this.estimatedSize==Integer.MIN_VALUE){throw"assert failed"}return this.estimatedSize};LNode.prototype.calcEstimatedSize=function(){if(this.child==null){return this.estimatedSize=Math.floor((this.rect.width+this.rect.height)/2)}else{this.estimatedSize=this.child.calcEstimatedSize();this.rect.width=this.estimatedSize;this.rect.height=this.estimatedSize;return this.estimatedSize}};LNode.prototype.scatter=function(){var randomCenterX;var randomCenterY;var minX=-LayoutConstants.INITIAL_WORLD_BOUNDARY;var maxX=LayoutConstants.INITIAL_WORLD_BOUNDARY;randomCenterX=LayoutConstants.WORLD_CENTER_X+RandomSeed.nextDouble()*(maxX-minX)+minX;var minY=-LayoutConstants.INITIAL_WORLD_BOUNDARY;var maxY=LayoutConstants.INITIAL_WORLD_BOUNDARY;randomCenterY=LayoutConstants.WORLD_CENTER_Y+RandomSeed.nextDouble()*(maxY-minY)+minY;this.rect.x=randomCenterX;this.rect.y=randomCenterY};LNode.prototype.updateBounds=function(){if(this.getChild()==null){throw"assert failed"}if(this.getChild().getNodes().length!=0){var childGraph=this.getChild();childGraph.updateBounds(true);this.rect.x=childGraph.getLeft();this.rect.y=childGraph.getTop();this.setWidth(childGraph.getRight()-childGraph.getLeft()+2*LayoutConstants.COMPOUND_NODE_MARGIN);this.setHeight(childGraph.getBottom()-childGraph.getTop()+2*LayoutConstants.COMPOUND_NODE_MARGIN+LayoutConstants.LABEL_HEIGHT)}};LNode.prototype.getInclusionTreeDepth=function(){if(this.inclusionTreeDepth==Integer.MAX_VALUE){throw"assert failed"}return this.inclusionTreeDepth};LNode.prototype.transform=function(trans){var left=this.rect.x;if(left>LayoutConstants.WORLD_BOUNDARY){left=LayoutConstants.WORLD_BOUNDARY}else if(left<-LayoutConstants.WORLD_BOUNDARY){left=-LayoutConstants.WORLD_BOUNDARY}var top=this.rect.y;if(top>LayoutConstants.WORLD_BOUNDARY){top=LayoutConstants.WORLD_BOUNDARY}else if(top<-LayoutConstants.WORLD_BOUNDARY){top=-LayoutConstants.WORLD_BOUNDARY}var leftTop=new PointD(left,top);var vLeftTop=trans.inverseTransformPoint(leftTop);this.setLocation(vLeftTop.x,vLeftTop.y)};LNode.prototype.getLeft=function(){return this.rect.x};LNode.prototype.getRight=function(){return this.rect.x+this.rect.width};LNode.prototype.getTop=function(){return this.rect.y};LNode.prototype.getBottom=function(){return this.rect.y+this.rect.height};LNode.prototype.getParent=function(){if(this.owner==null){return null}return this.owner.getParent()};module.exports=LNode},{"./Integer":156,"./LGraphObject":160,"./RectangleD":167}],162:[function(require,module,exports){var LayoutConstants=require("./LayoutConstants");var HashMap=require("./HashMap");var LGraphManager=require("./LGraphManager");function Layout(isRemoteUse){this.layoutQuality=LayoutConstants.DEFAULT_QUALITY;this.createBendsAsNeeded=LayoutConstants.DEFAULT_CREATE_BENDS_AS_NEEDED;this.incremental=LayoutConstants.DEFAULT_INCREMENTAL;this.animationOnLayout=LayoutConstants.DEFAULT_ANIMATION_ON_LAYOUT;this.animationDuringLayout=LayoutConstants.DEFAULT_ANIMATION_DURING_LAYOUT;this.animationPeriod=LayoutConstants.DEFAULT_ANIMATION_PERIOD;this.uniformLeafNodeSizes=LayoutConstants.DEFAULT_UNIFORM_LEAF_NODE_SIZES;this.edgeToDummyNodes=new HashMap;this.graphManager=new LGraphManager(this);this.isLayoutFinished=false;this.isSubLayout=false;this.isRemoteUse=false;if(isRemoteUse!=null){this.isRemoteUse=isRemoteUse}}Layout.RANDOM_SEED=1;Layout.prototype.getGraphManager=function(){return this.graphManager};Layout.prototype.getAllNodes=function(){return this.graphManager.getAllNodes()};Layout.prototype.getAllEdges=function(){return this.graphManager.getAllEdges()};Layout.prototype.getAllNodesToApplyGravitation=function(){return this.graphManager.getAllNodesToApplyGravitation()};Layout.prototype.newGraphManager=function(){var gm=new LGraphManager(this);this.graphManager=gm;return gm};Layout.prototype.newGraph=function(vGraph){return new LGraph(null,this.graphManager,vGraph)};Layout.prototype.newNode=function(vNode){return new LNode(this.graphManager,vNode)};Layout.prototype.newEdge=function(vEdge){return new LEdge(null,null,vEdge)};Layout.prototype.runLayout=function(){this.isLayoutFinished=false;this.initParameters();var isLayoutSuccessfull;if(this.graphManager.getRoot()==null||this.graphManager.getRoot().getNodes().length==0||this.graphManager.includesInvalidEdge()){isLayoutSuccessfull=false}else{var startTime=0;if(!this.isSubLayout){startTime=(new Date).getTime()}isLayoutSuccessfull=this.layout();if(!this.isSubLayout){var endTime=(new Date).getTime();var excTime=endTime-startTime;console.log("Total execution time: "+excTime+" miliseconds.")}}if(isLayoutSuccessfull){if(!this.isSubLayout){this.doPostLayout()}}this.isLayoutFinished=true;return isLayoutSuccessfull};Layout.prototype.doPostLayout=function(){this.transform();this.update()};Layout.prototype.update2=function(){if(this.createBendsAsNeeded){this.createBendpointsFromDummyNodes();this.graphManager.resetAllEdges()}if(!this.isRemoteUse){var edge;var allEdges=this.graphManager.getAllEdges();for(var i=0;i<allEdges.length;i++){edge=allEdges[i]}var node;var nodes=this.graphManager.getRoot().getNodes();for(var i=0;i<nodes.length;i++){node=nodes[i]}this.update(this.graphManager.getRoot())}};Layout.prototype.update=function(obj){if(obj==null){this.update2()}else if(obj instanceof LNode){var node=obj;if(node.getChild()!=null){var nodes=node.getChild().getNodes();for(var i=0;i<nodes.length;i++){update(nodes[i])}}if(node.vGraphObject!=null){var vNode=node.vGraphObject;vNode.update(node)}}else if(obj instanceof LEdge){var edge=obj;if(edge.vGraphObject!=null){var vEdge=edge.vGraphObject;vEdge.update(edge)}}else if(obj instanceof LGraph){var graph=obj;if(graph.vGraphObject!=null){var vGraph=graph.vGraphObject;vGraph.update(graph)}}};Layout.prototype.initParameters=function(){if(!this.isSubLayout){this.layoutQuality=LayoutConstants.DEFAULT_QUALITY;this.animationDuringLayout=LayoutConstants.DEFAULT_ANIMATION_ON_LAYOUT;this.animationPeriod=LayoutConstants.DEFAULT_ANIMATION_PERIOD;this.animationOnLayout=LayoutConstants.DEFAULT_ANIMATION_DURING_LAYOUT;this.incremental=LayoutConstants.DEFAULT_INCREMENTAL;this.createBendsAsNeeded=LayoutConstants.DEFAULT_CREATE_BENDS_AS_NEEDED;this.uniformLeafNodeSizes=LayoutConstants.DEFAULT_UNIFORM_LEAF_NODE_SIZES}if(this.animationDuringLayout){animationOnLayout=false}};Layout.prototype.transform=function(newLeftTop){if(newLeftTop==undefined){this.transform(new PointD(0,0))}else{var trans=new Transform;var leftTop=this.graphManager.getRoot().updateLeftTop();if(leftTop!=null){trans.setWorldOrgX(newLeftTop.x);trans.setWorldOrgY(newLeftTop.y);trans.setDeviceOrgX(leftTop.x);trans.setDeviceOrgY(leftTop.y);var nodes=this.getAllNodes();var node;for(var i=0;i<nodes.length;i++){node=nodes[i];node.transform(trans)}}}};Layout.prototype.positionNodesRandomly=function(graph){if(graph==undefined){this.positionNodesRandomly(this.getGraphManager().getRoot());this.getGraphManager().getRoot().updateBounds(true)}else{var lNode;var childGraph;var nodes=graph.getNodes();for(var i=0;i<nodes.length;i++){lNode=nodes[i];childGraph=lNode.getChild();if(childGraph==null){lNode.scatter()}else if(childGraph.getNodes().length==0){lNode.scatter()}else{this.positionNodesRandomly(childGraph);lNode.updateBounds()}}}};Layout.prototype.getFlatForest=function(){var flatForest=[];var isForest=true;var allNodes=this.graphManager.getRoot().getNodes();var isFlat=true;for(var i=0;i<allNodes.length;i++){if(allNodes[i].getChild()!=null){isFlat=false}}if(!isFlat){return flatForest}var visited=new HashSet;var toBeVisited=[];var parents=new HashMap;var unProcessedNodes=[];unProcessedNodes=unProcessedNodes.concat(allNodes);while(unProcessedNodes.length>0&&isForest){toBeVisited.push(unProcessedNodes[0]);while(toBeVisited.length>0&&isForest){var currentNode=toBeVisited[0];toBeVisited.splice(0,1);visited.add(currentNode);var neighborEdges=currentNode.getEdges();for(var i=0;i<neighborEdges.length;i++){var currentNeighbor=neighborEdges[i].getOtherEnd(currentNode);if(parents.get(currentNode)!=currentNeighbor){if(!visited.contains(currentNeighbor)){toBeVisited.push(currentNeighbor);parents.put(currentNeighbor,currentNode)}else{isForest=false;break}}}}if(!isForest){flatForest=[]}else{var temp=[];visited.addAllTo(temp);flatForest.push(temp);for(var i=0;i<temp.length;i++){var value=temp[i];var index=unProcessedNodes.indexOf(value);if(index>-1){unProcessedNodes.splice(index,1)}}visited=new HashSet;parents=new HashMap}}return flatForest};Layout.prototype.createDummyNodesForBendpoints=function(edge){var dummyNodes=[];var prev=edge.source;var graph=this.graphManager.calcLowestCommonAncestor(edge.source,edge.target);for(var i=0;i<edge.bendpoints.length;i++){var dummyNode=this.newNode(null);dummyNode.setRect(new Point(0,0),new Dimension(1,1));graph.add(dummyNode);var dummyEdge=this.newEdge(null);this.graphManager.add(dummyEdge,prev,dummyNode);dummyNodes.add(dummyNode);prev=dummyNode}var dummyEdge=this.newEdge(null);this.graphManager.add(dummyEdge,prev,edge.target);this.edgeToDummyNodes.put(edge,dummyNodes);if(edge.isInterGraph()){this.graphManager.remove(edge)}else{graph.remove(edge)}return dummyNodes};Layout.prototype.createBendpointsFromDummyNodes=function(){var edges=[];edges=edges.concat(this.graphManager.getAllEdges());edges=this.edgeToDummyNodes.keySet().concat(edges);for(var k=0;k<edges.length;k++){var lEdge=edges[k];if(lEdge.bendpoints.length>0){var path=this.edgeToDummyNodes.get(lEdge);for(var i=0;i<path.length;i++){var dummyNode=path[i];var p=new PointD(dummyNode.getCenterX(),dummyNode.getCenterY());var ebp=lEdge.bendpoints.get(i);ebp.x=p.x;ebp.y=p.y;dummyNode.getOwner().remove(dummyNode)}this.graphManager.add(lEdge,lEdge.source,lEdge.target)}}};Layout.transform=function(sliderValue,defaultValue,minDiv,maxMul){if(minDiv!=undefined&&maxMul!=undefined){var value=defaultValue;if(sliderValue<=50){var minValue=defaultValue/minDiv;value-=(defaultValue-minValue)/50*(50-sliderValue)}else{var maxValue=defaultValue*maxMul;value+=(maxValue-defaultValue)/50*(sliderValue-50)}return value}else{var a,b;if(sliderValue<=50){a=9*defaultValue/500;b=defaultValue/10}else{a=9*defaultValue/50;b=-8*defaultValue}return a*sliderValue+b}};Layout.findCenterOfTree=function(nodes){var list=[];list=list.concat(nodes);var removedNodes=[];var remainingDegrees=new HashMap;var foundCenter=false;var centerNode=null;if(list.length==1||list.length==2){foundCenter=true;centerNode=list[0]}for(var i=0;i<list.length;i++){var node=list[i];var degree=node.getNeighborsList().size();remainingDegrees.put(node,node.getNeighborsList().size());if(degree==1){removedNodes.push(node)}}var tempList=[];tempList=tempList.concat(removedNodes);while(!foundCenter){var tempList2=[];tempList2=tempList2.concat(tempList);tempList=[];for(var i=0;i<list.length;i++){var node=list[i];var index=list.indexOf(node);if(index>=0){list.splice(index,1)}var neighbours=node.getNeighborsList();for(var j in neighbours.set){var neighbour=neighbours.set[j];if(removedNodes.indexOf(neighbour)<0){var otherDegree=remainingDegrees.get(neighbour);var newDegree=otherDegree-1;if(newDegree==1){tempList.push(neighbour)}remainingDegrees.put(neighbour,newDegree)}}}removedNodes=removedNodes.concat(tempList);if(list.length==1||list.length==2){foundCenter=true;centerNode=list[0]}}return centerNode};Layout.prototype.setGraphManager=function(gm){this.graphManager=gm};module.exports=Layout},{"./HashMap":152,"./LGraphManager":159,"./LayoutConstants":163}],163:[function(require,module,exports){function LayoutConstants(){}LayoutConstants.PROOF_QUALITY=0;LayoutConstants.DEFAULT_QUALITY=1;LayoutConstants.DRAFT_QUALITY=2;LayoutConstants.DEFAULT_CREATE_BENDS_AS_NEEDED=false;LayoutConstants.DEFAULT_INCREMENTAL=false;LayoutConstants.DEFAULT_ANIMATION_ON_LAYOUT=true;LayoutConstants.DEFAULT_ANIMATION_DURING_LAYOUT=false;LayoutConstants.DEFAULT_ANIMATION_PERIOD=50;LayoutConstants.DEFAULT_UNIFORM_LEAF_NODE_SIZES=false;LayoutConstants.DEFAULT_GRAPH_MARGIN=10;LayoutConstants.LABEL_HEIGHT=20;LayoutConstants.COMPOUND_NODE_MARGIN=5;LayoutConstants.SIMPLE_NODE_SIZE=40;LayoutConstants.SIMPLE_NODE_HALF_SIZE=LayoutConstants.SIMPLE_NODE_SIZE/2;LayoutConstants.EMPTY_COMPOUND_NODE_SIZE=40;LayoutConstants.MIN_EDGE_LENGTH=1;LayoutConstants.WORLD_BOUNDARY=1e6;LayoutConstants.INITIAL_WORLD_BOUNDARY=LayoutConstants.WORLD_BOUNDARY/1e3;LayoutConstants.WORLD_CENTER_X=1200;LayoutConstants.WORLD_CENTER_Y=900;module.exports=LayoutConstants},{}],164:[function(require,module,exports){function Point(x,y,p){this.x=null;this.y=null;if(x==null&&y==null&&p==null){this.x=0;this.y=0}else if(typeof x=="number"&&typeof y=="number"&&p==null){this.x=x;this.y=y}else if(x.constructor.name=="Point"&&y==null&&p==null){p=x;this.x=p.x;this.y=p.y}}Point.prototype.getX=function(){return this.x};Point.prototype.getY=function(){return this.y};Point.prototype.getLocation=function(){return new Point(this.x,this.y)};Point.prototype.setLocation=function(x,y,p){if(x.constructor.name=="Point"&&y==null&&p==null){p=x;this.setLocation(p.x,p.y)}else if(typeof x=="number"&&typeof y=="number"&&p==null){if(parseInt(x)==x&&parseInt(y)==y){this.move(x,y)}else{this.x=Math.floor(x+.5);this.y=Math.floor(y+.5)}}};Point.prototype.move=function(x,y){this.x=x;this.y=y};Point.prototype.translate=function(dx,dy){this.x+=dx;this.y+=dy};Point.prototype.equals=function(obj){if(obj.constructor.name=="Point"){var pt=obj;return this.x==pt.x&&this.y==pt.y}return this==obj};Point.prototype.toString=function(){return(new Point).constructor.name+"[x="+this.x+",y="+this.y+"]"};module.exports=Point},{}],165:[function(require,module,exports){function PointD(x,y){if(x==null&&y==null){this.x=0;this.y=0}else{this.x=x;this.y=y}}PointD.prototype.getX=function(){return this.x};PointD.prototype.getY=function(){return this.y};PointD.prototype.setX=function(x){this.x=x};PointD.prototype.setY=function(y){this.y=y};PointD.prototype.getDifference=function(pt){return new DimensionD(this.x-pt.x,this.y-pt.y)};PointD.prototype.getCopy=function(){return new PointD(this.x,this.y)};PointD.prototype.translate=function(dim){this.x+=dim.width;this.y+=dim.height;return this};module.exports=PointD},{}],166:[function(require,module,exports){function RandomSeed(){}RandomSeed.seed=1;RandomSeed.x=0;RandomSeed.nextDouble=function(){RandomSeed.x=Math.sin(RandomSeed.seed++)*1e4;return RandomSeed.x-Math.floor(RandomSeed.x)};module.exports=RandomSeed},{}],167:[function(require,module,exports){function RectangleD(x,y,width,height){this.x=0;this.y=0;this.width=0;this.height=0;if(x!=null&&y!=null&&width!=null&&height!=null){this.x=x;this.y=y;this.width=width;this.height=height}}RectangleD.prototype.getX=function(){return this.x};RectangleD.prototype.setX=function(x){this.x=x};RectangleD.prototype.getY=function(){return this.y};RectangleD.prototype.setY=function(y){this.y=y};RectangleD.prototype.getWidth=function(){return this.width};RectangleD.prototype.setWidth=function(width){this.width=width};RectangleD.prototype.getHeight=function(){return this.height};RectangleD.prototype.setHeight=function(height){this.height=height};RectangleD.prototype.getRight=function(){return this.x+this.width};RectangleD.prototype.getBottom=function(){return this.y+this.height};RectangleD.prototype.intersects=function(a){if(this.getRight()<a.x){return false}if(this.getBottom()<a.y){return false}if(a.getRight()<this.x){return false}if(a.getBottom()<this.y){return false}return true};RectangleD.prototype.getCenterX=function(){return this.x+this.width/2};RectangleD.prototype.getMinX=function(){return this.getX()};RectangleD.prototype.getMaxX=function(){return this.getX()+this.width};RectangleD.prototype.getCenterY=function(){return this.y+this.height/2};RectangleD.prototype.getMinY=function(){return this.getY()};RectangleD.prototype.getMaxY=function(){return this.getY()+this.height};RectangleD.prototype.getWidthHalf=function(){return this.width/2};RectangleD.prototype.getHeightHalf=function(){return this.height/2};module.exports=RectangleD},{}],168:[function(require,module,exports){function Transform(x,y){this.lworldOrgX=0;this.lworldOrgY=0;this.ldeviceOrgX=0;this.ldeviceOrgY=0;this.lworldExtX=1;this.lworldExtY=1;this.ldeviceExtX=1;this.ldeviceExtY=1}Transform.prototype.getWorldOrgX=function(){return this.lworldOrgX};Transform.prototype.setWorldOrgX=function(wox){this.lworldOrgX=wox};Transform.prototype.getWorldOrgY=function(){return this.lworldOrgY};Transform.prototype.setWorldOrgY=function(woy){this.lworldOrgY=woy};Transform.prototype.getWorldExtX=function(){return this.lworldExtX};Transform.prototype.setWorldExtX=function(wex){this.lworldExtX=wex};Transform.prototype.getWorldExtY=function(){return this.lworldExtY};Transform.prototype.setWorldExtY=function(wey){this.lworldExtY=wey};Transform.prototype.getDeviceOrgX=function(){return this.ldeviceOrgX};Transform.prototype.setDeviceOrgX=function(dox){this.ldeviceOrgX=dox};Transform.prototype.getDeviceOrgY=function(){return this.ldeviceOrgY};Transform.prototype.setDeviceOrgY=function(doy){this.ldeviceOrgY=doy};Transform.prototype.getDeviceExtX=function(){return this.ldeviceExtX};Transform.prototype.setDeviceExtX=function(dex){this.ldeviceExtX=dex};Transform.prototype.getDeviceExtY=function(){return this.ldeviceExtY};Transform.prototype.setDeviceExtY=function(dey){this.ldeviceExtY=dey};Transform.prototype.transformX=function(x){var xDevice=0;var worldExtX=this.lworldExtX;if(worldExtX!=0){xDevice=this.ldeviceOrgX+(x-this.lworldOrgX)*this.ldeviceExtX/worldExtX}return xDevice};Transform.prototype.transformY=function(y){var yDevice=0;var worldExtY=this.lworldExtY;if(worldExtY!=0){yDevice=this.ldeviceOrgY+(y-this.lworldOrgY)*this.ldeviceExtY/worldExtY}return yDevice};Transform.prototype.inverseTransformX=function(x){var xWorld=0;var deviceExtX=this.ldeviceExtX;if(deviceExtX!=0){xWorld=this.lworldOrgX+(x-this.ldeviceOrgX)*this.lworldExtX/deviceExtX}return xWorld};Transform.prototype.inverseTransformY=function(y){var yWorld=0;var deviceExtY=this.ldeviceExtY;if(deviceExtY!=0){yWorld=this.lworldOrgY+(y-this.ldeviceOrgY)*this.lworldExtY/deviceExtY}return yWorld};Transform.prototype.inverseTransformPoint=function(inPoint){var outPoint=new PointD(this.inverseTransformX(inPoint.x),this.inverseTransformY(inPoint.y));return outPoint};module.exports=Transform},{}],169:[function(require,module,exports){function UniqueIDGeneretor(){}UniqueIDGeneretor.lastID=0;UniqueIDGeneretor.createID=function(obj){if(UniqueIDGeneretor.isPrimitive(obj)){return obj}if(obj.uniqueID!=null){return obj.uniqueID}obj.uniqueID=UniqueIDGeneretor.getString();UniqueIDGeneretor.lastID++;return obj.uniqueID};UniqueIDGeneretor.getString=function(id){if(id==null)id=UniqueIDGeneretor.lastID;return"Object#"+id+""};UniqueIDGeneretor.isPrimitive=function(arg){var type=typeof arg;return arg==null||type!="object"&&type!="function"};module.exports=UniqueIDGeneretor},{}],170:[function(require,module,exports){"use strict";var Thread;var DimensionD=require("./DimensionD");var HashMap=require("./HashMap");var HashSet=require("./HashSet");var IGeometry=require("./IGeometry");var IMath=require("./IMath");var Integer=require("./Integer");var Point=require("./Point");var PointD=require("./PointD");var RandomSeed=require("./RandomSeed");var RectangleD=require("./RectangleD");var Transform=require("./Transform");var UniqueIDGeneretor=require("./UniqueIDGeneretor");var LGraphObject=require("./LGraphObject");var LGraph=require("./LGraph");var LEdge=require("./LEdge");var LGraphManager=require("./LGraphManager");var LNode=require("./LNode");var Layout=require("./Layout");var LayoutConstants=require("./LayoutConstants");var FDLayout=require("./FDLayout");var FDLayoutConstants=require("./FDLayoutConstants");var FDLayoutEdge=require("./FDLayoutEdge");var FDLayoutNode=require("./FDLayoutNode");var CoSEConstants=require("./CoSEConstants");var CoSEEdge=require("./CoSEEdge");var CoSEGraph=require("./CoSEGraph");var CoSEGraphManager=require("./CoSEGraphManager");var CoSELayout=require("./CoSELayout");var CoSENode=require("./CoSENode");_CoSELayout.idToLNode={};_CoSELayout.toBeTiled={};var defaults={ready:function(){},stop:function(){},fit:true,padding:10,randomize:true,nodeRepulsion:4500,idealEdgeLength:50,edgeElasticity:.45,nestingFactor:.1,gravity:.25,numIter:2500,tile:true,animate:"end",tilingPaddingVertical:10,tilingPaddingHorizontal:10,gravityRangeCompound:1.5,gravityCompound:1,gravityRange:3.8};function extend(defaults,options){var obj={};for(var i in defaults){obj[i]=defaults[i]}for(var i in options){obj[i]=options[i]}return obj}_CoSELayout.layout=new CoSELayout;function _CoSELayout(options){this.options=extend(defaults,options);_CoSELayout.getUserOptions(this.options)}_CoSELayout.getUserOptions=function(options){if(options.nodeRepulsion!=null)CoSEConstants.DEFAULT_REPULSION_STRENGTH=FDLayoutConstants.DEFAULT_REPULSION_STRENGTH=options.nodeRepulsion;if(options.idealEdgeLength!=null)CoSEConstants.DEFAULT_EDGE_LENGTH=FDLayoutConstants.DEFAULT_EDGE_LENGTH=options.idealEdgeLength;if(options.edgeElasticity!=null)CoSEConstants.DEFAULT_SPRING_STRENGTH=FDLayoutConstants.DEFAULT_SPRING_STRENGTH=options.edgeElasticity;if(options.nestingFactor!=null)CoSEConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR=FDLayoutConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR=options.nestingFactor;if(options.gravity!=null)CoSEConstants.DEFAULT_GRAVITY_STRENGTH=FDLayoutConstants.DEFAULT_GRAVITY_STRENGTH=options.gravity;if(options.numIter!=null)CoSEConstants.MAX_ITERATIONS=FDLayoutConstants.MAX_ITERATIONS=options.numIter;if(options.gravityRange!=null)CoSEConstants.DEFAULT_GRAVITY_RANGE_FACTOR=FDLayoutConstants.DEFAULT_GRAVITY_RANGE_FACTOR=options.gravityRange;if(options.gravityCompound!=null)CoSEConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH=FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH=options.gravityCompound;if(options.gravityRangeCompound!=null)CoSEConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR=FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR=options.gravityRangeCompound;CoSEConstants.DEFAULT_INCREMENTAL=FDLayoutConstants.DEFAULT_INCREMENTAL=LayoutConstants.DEFAULT_INCREMENTAL=!options.randomize;CoSEConstants.ANIMATE=FDLayoutConstants.ANIMATE=options.animate};_CoSELayout.prototype.run=function(){var layout=this;_CoSELayout.idToLNode={};_CoSELayout.toBeTiled={};_CoSELayout.layout=new CoSELayout;this.cy=this.options.cy;var after=this;this.cy.trigger("layoutstart");var gm=_CoSELayout.layout.newGraphManager();this.gm=gm;var nodes=this.options.eles.nodes();var edges=this.options.eles.edges();this.root=gm.addRoot();if(!this.options.tile){this.processChildrenList(this.root,_CoSELayout.getTopMostNodes(nodes))}else{var memberGroups=this.groupZeroDegreeMembers();var tiledMemberPack=this.clearCompounds(this.options);var tiledZeroDegreeNodes=this.clearZeroDegreeMembers(memberGroups)}for(var i=0;i<edges.length;i++){var edge=edges[i];var sourceNode=_CoSELayout.idToLNode[edge.data("source")];
 
-var targetNode=_CoSELayout.idToLNode[edge.data("target")];var e1=gm.add(_CoSELayout.layout.newEdge(),sourceNode,targetNode);e1.id=edge.id()}var t1=layout.thread;if(!t1||t1.stopped()){t1=layout.thread=Thread();t1.require(DimensionD,"DimensionD");t1.require(HashMap,"HashMap");t1.require(HashSet,"HashSet");t1.require(IGeometry,"IGeometry");t1.require(IMath,"IMath");t1.require(Integer,"Integer");t1.require(Point,"Point");t1.require(PointD,"PointD");t1.require(RandomSeed,"RandomSeed");t1.require(RectangleD,"RectangleD");t1.require(Transform,"Transform");t1.require(UniqueIDGeneretor,"UniqueIDGeneretor");t1.require(LGraphObject,"LGraphObject");t1.require(LGraph,"LGraph");t1.require(LEdge,"LEdge");t1.require(LGraphManager,"LGraphManager");t1.require(LNode,"LNode");t1.require(Layout,"Layout");t1.require(LayoutConstants,"LayoutConstants");t1.require(FDLayout,"FDLayout");t1.require(FDLayoutConstants,"FDLayoutConstants");t1.require(FDLayoutEdge,"FDLayoutEdge");t1.require(FDLayoutNode,"FDLayoutNode");t1.require(CoSEConstants,"CoSEConstants");t1.require(CoSEEdge,"CoSEEdge");t1.require(CoSEGraph,"CoSEGraph");t1.require(CoSEGraphManager,"CoSEGraphManager");t1.require(CoSELayout,"CoSELayout");t1.require(CoSENode,"CoSENode")}var nodes=this.options.eles.nodes();var edges=this.options.eles.edges();var pData={nodes:[],edges:[]};var nodeIdMap={};for(var i=0;i<nodes.length;i++){nodeIdMap[nodes[i].id()]=true}var lnodes=gm.getAllNodes();for(var i=0;i<lnodes.length;i++){var lnode=lnodes[i];var nodeId=lnode.id;var cyNode=this.options.cy.getElementById(nodeId);var parentId=cyNode.data("parent");parentId=nodeIdMap[parentId]?parentId:undefined;var w=lnode.rect.width;var posX=lnode.rect.x;var posY=lnode.rect.y;var h=lnode.rect.height;var dummy_parent_id=null;if(cyNode.scratch("coseBilkent")&&cyNode.scratch("coseBilkent").dummy_parent_id)dummy_parent_id=cyNode.scratch("coseBilkent").dummy_parent_id;pData["nodes"].push({id:nodeId,pid:parentId,x:posX,y:posY,width:w,height:h,dummy_parent_id:dummy_parent_id})}var ledges=gm.getAllEdges();for(var i=0;i<ledges.length;i++){var ledge=ledges[i];var edgeId=ledge.id;var cyEdge=this.options.cy.getElementById(edgeId);var srcNodeId=cyEdge.source().id();var tgtNodeId=cyEdge.target().id();pData["edges"].push({id:edgeId,source:srcNodeId,target:tgtNodeId})}var ready=false;t1.pass(pData).run(function(pData){var log=function(msg){broadcast({log:msg})};log("start thread");var layout_t=new CoSELayout;var gm_t=layout_t.newGraphManager();var ngraph=gm_t.layout.newGraph();var nnode=gm_t.layout.newNode(null);var root=gm_t.add(ngraph,nnode);root.graphManager=gm_t;gm_t.setRootGraph(root);var root_t=gm_t.rootGraph;var orphans_t=[];var idToLNode_t={};var childrenMap={};var result={};var processNodes=function(parent,children){var size=children.length;for(var i=0;i<size;i++){var theChild=children[i];var children_of_children=childrenMap[theChild.id];var theNode;if(theChild.width!=null&&theChild.height!=null){theNode=parent.add(new CoSENode(gm_t,new PointD(theChild.x,theChild.y),new DimensionD(parseFloat(theChild.width),parseFloat(theChild.height))))}else{theNode=parent.add(new CoSENode(gm_t))}theNode.id=theChild.id;idToLNode_t[theChild.id]=theNode;if(isNaN(theNode.rect.x)){theNode.rect.x=0}if(isNaN(theNode.rect.y)){theNode.rect.y=0}if(children_of_children!=null&&children_of_children.length>0){var theNewGraph;theNewGraph=layout_t.getGraphManager().add(layout_t.newGraph(),theNode);theNewGraph.graphManager=gm_t;processNodes(theNewGraph,children_of_children)}}};var nodes=pData.nodes;for(var i=0;i<nodes.length;i++){var theNode=nodes[i];var p_id=theNode.pid;if(p_id!=null){if(childrenMap[p_id]==null){childrenMap[p_id]=[]}childrenMap[p_id].push(theNode)}else{orphans_t.push(theNode)}}processNodes(root_t,orphans_t);var edges=pData.edges;for(var i=0;i<edges.length;i++){var edge=edges[i];var sourceNode=idToLNode_t[edge.source];var targetNode=idToLNode_t[edge.target];var e1=gm_t.add(layout_t.newEdge(),sourceNode,targetNode)}var graphs=gm_t.getGraphs();var size=graphs.length;var i;var dummyNodes=[];var dummyEdges=[];var graph;for(i=0;i<size;i++){graph=graphs[i];if(graph.getEdges().length>0){continue}graph.updateBounds(true);var centerX=(graph.getLeft()+graph.getRight())/2;var centerY=(graph.getTop()+graph.getBottom())/2;var children=graph.getNodes();var dummyNode=new CoSENode(gm_t,new PointD(centerX,centerY),new DimensionD(1,1));dummyNode.id=i+"_dummy";dummyNodes.push(dummyNode);graph.add(dummyNode);for(var k=0;k<children.length;k++){if(children[k].id==dummyNode.id)continue;var newEdge=layout_t.newEdge();newEdge.id=children[k].id+"_"+dummyNode.id;dummyEdges.push({dummyEdge:newEdge,parentGraph:graph});graph.add(newEdge,children[k],dummyNode)}}layout_t.runLayout();for(var id in idToLNode_t){var lNode=idToLNode_t[id];var rect=lNode.rect;result[id]={id:id,x:rect.x,y:rect.y,w:rect.width,h:rect.height}}for(var i=0;i<dummyNodes.length;i++){var nodeInst=dummyNodes[i];nodeInst.getOwner().remove(nodeInst)}for(var i=0;i<dummyEdges.length;i++){var edgeInst=dummyEdges[i];edgeInst.parentGraph.remove(edgeInst.dummyEdge)}var seeds={};seeds.rsSeed=RandomSeed.seed;seeds.rsX=RandomSeed.x;var pass={result:result,seeds:seeds};return pass}).then(function(pass){var result=pass.result;var seeds=pass.seeds;RandomSeed.seed=seeds.rsSeed;RandomSeed.x=seeds.rsX;for(var id in result){var lNode=_CoSELayout.idToLNode[id];var node=result[id];lNode.rect.x=node.x;lNode.rect.y=node.y;lNode.rect.width=node.w;lNode.rect.height=node.h}if(after.options.tile){after.repopulateZeroDegreeMembers(tiledZeroDegreeNodes);after.repopulateCompounds(tiledMemberPack);after.options.eles.nodes().updateCompoundBounds()}var getPositions=function(i,ele){var theId=ele.data("id");var lNode=_CoSELayout.idToLNode[theId];return{x:lNode.getRect().getCenterX(),y:lNode.getRect().getCenterY()}};if(after.options.animate!=="during"){after.options.eles.nodes().layoutPositions(after,after.options,getPositions)}else{after.options.eles.nodes().positions(getPositions);if(after.options.fit)after.options.cy.fit(after.options.eles.nodes(),after.options.padding);if(!ready){after.cy.one("layoutready",after.options.ready);after.cy.trigger("layoutready")}after.cy.one("layoutstop",after.options.stop);after.cy.trigger("layoutstop")}t1.stop();after.options.eles.nodes().removeScratch("coseBilkent")});t1.on("message",function(e){var logMsg=e.message.log;if(logMsg!=null){console.log("Thread log: "+logMsg);return}var pData=e.message.pData;if(pData!=null){after.options.eles.nodes().positions(function(i,ele){if(ele.scratch("coseBilkent")&&ele.scratch("coseBilkent").dummy_parent_id){var dummyParent=ele.scratch("coseBilkent").dummy_parent_id;return{x:dummyParent.x,y:dummyParent.y}}var theId=ele.data("id");var pNode=pData[theId];var temp=this;while(pNode==null){temp=temp.parent()[0];pNode=pData[temp.id()];pData[theId]=pNode}return{x:pNode.x,y:pNode.y}});if(after.options.fit)after.options.cy.fit(after.options.eles.nodes(),after.options.padding);if(!ready){ready=true;after.one("layoutready",after.options.ready);after.trigger({type:"layoutready",layout:after})}return}});return this};_CoSELayout.getTopMostNodes=function(nodes){var nodesMap={};for(var i=0;i<nodes.length;i++){nodesMap[nodes[i].id()]=true}var roots=nodes.filter(function(i,ele){var parent=ele.parent()[0];while(parent!=null){if(nodesMap[parent.id()]){return false}parent=parent.parent()[0]}return true});return roots};_CoSELayout.prototype.getToBeTiled=function(node){var id=node.data("id");if(_CoSELayout.toBeTiled[id]!=null){return _CoSELayout.toBeTiled[id]}var children=node.children();if(children==null||children.length==0){_CoSELayout.toBeTiled[id]=false;return false}for(var i=0;i<children.length;i++){var theChild=children[i];if(this.getNodeDegree(theChild)>0){_CoSELayout.toBeTiled[id]=false;return false}if(theChild.children()==null||theChild.children().length==0){_CoSELayout.toBeTiled[theChild.data("id")]=false;continue}if(!this.getToBeTiled(theChild)){_CoSELayout.toBeTiled[id]=false;return false}}_CoSELayout.toBeTiled[id]=true;return true};_CoSELayout.prototype.getNodeDegree=function(node){var id=node.id();var edges=this.options.eles.edges().filter(function(i,ele){var source=ele.data("source");var target=ele.data("target");if(source!=target&&(source==id||target==id)){return true}});return edges.length};_CoSELayout.prototype.getNodeDegreeWithChildren=function(node){var degree=this.getNodeDegree(node);var children=node.children();for(var i=0;i<children.length;i++){var child=children[i];degree+=this.getNodeDegreeWithChildren(child)}return degree};_CoSELayout.prototype.groupZeroDegreeMembers=function(){var tempMemberGroups=[];var memberGroups=[];var self=this;var parentMap={};for(var i=0;i<this.options.eles.nodes().length;i++){parentMap[this.options.eles.nodes()[i].id()]=true}var zeroDegree=this.options.eles.nodes().filter(function(i,ele){var pid=ele.data("parent");if(pid!=undefined&&!parentMap[pid]){pid=undefined}if(self.getNodeDegreeWithChildren(ele)==0&&(pid==undefined||pid!=undefined&&!self.getToBeTiled(ele.parent()[0])))return true;else return false});for(var i=0;i<zeroDegree.length;i++){var node=zeroDegree[i];var p_id=node.parent().id();if(p_id!=undefined&&!parentMap[p_id]){p_id=undefined}if(typeof tempMemberGroups[p_id]==="undefined")tempMemberGroups[p_id]=[];tempMemberGroups[p_id]=tempMemberGroups[p_id].concat(node)}for(var p_id in tempMemberGroups){if(tempMemberGroups[p_id].length>1){var dummyCompoundId="DummyCompound_"+p_id;memberGroups[dummyCompoundId]=tempMemberGroups[p_id];if(this.options.cy.getElementById(dummyCompoundId).empty()){this.options.cy.add({group:"nodes",data:{id:dummyCompoundId,parent:p_id}});var dummy=this.options.cy.nodes()[this.options.cy.nodes().length-1];this.options.eles=this.options.eles.union(dummy);dummy.hide();for(var i=0;i<tempMemberGroups[p_id].length;i++){if(i==0){dummy.scratch("coseBilkent",{tempchildren:[]})}var node=tempMemberGroups[p_id][i];var scratchObj=node.scratch("coseBilkent");if(!scratchObj){scratchObj={};node.scratch("coseBilkent",scratchObj)}scratchObj["dummy_parent_id"]=dummyCompoundId;this.options.cy.add({group:"nodes",data:{parent:dummyCompoundId,width:node.width(),height:node.height()}});var tempchild=this.options.cy.nodes()[this.options.cy.nodes().length-1];tempchild.hide();tempchild.css("width",tempchild.data("width"));tempchild.css("height",tempchild.data("height"));tempchild.width();dummy.scratch("coseBilkent").tempchildren.push(tempchild)}}}}return memberGroups};_CoSELayout.prototype.performDFSOnCompounds=function(options){var compoundOrder=[];var roots=_CoSELayout.getTopMostNodes(this.options.eles.nodes());this.fillCompexOrderByDFS(compoundOrder,roots);return compoundOrder};_CoSELayout.prototype.fillCompexOrderByDFS=function(compoundOrder,children){for(var i=0;i<children.length;i++){var child=children[i];this.fillCompexOrderByDFS(compoundOrder,child.children());if(this.getToBeTiled(child)){compoundOrder.push(child)}}};_CoSELayout.prototype.clearCompounds=function(options){var childGraphMap=[];var compoundOrder=this.performDFSOnCompounds(options);_CoSELayout.compoundOrder=compoundOrder;this.processChildrenList(this.root,_CoSELayout.getTopMostNodes(this.options.eles.nodes()));for(var i=0;i<compoundOrder.length;i++){var lCompoundNode=_CoSELayout.idToLNode[compoundOrder[i].id()];childGraphMap[compoundOrder[i].id()]=compoundOrder[i].children();lCompoundNode.child=null}var tiledMemberPack=this.tileCompoundMembers(childGraphMap);return tiledMemberPack};_CoSELayout.prototype.clearZeroDegreeMembers=function(memberGroups){var tiledZeroDegreePack=[];for(var id in memberGroups){var compoundNode=_CoSELayout.idToLNode[id];tiledZeroDegreePack[id]=this.tileNodes(memberGroups[id]);compoundNode.rect.width=tiledZeroDegreePack[id].width;compoundNode.rect.height=tiledZeroDegreePack[id].height}return tiledZeroDegreePack};_CoSELayout.prototype.repopulateCompounds=function(tiledMemberPack){for(var i=_CoSELayout.compoundOrder.length-1;i>=0;i--){var id=_CoSELayout.compoundOrder[i].id();var lCompoundNode=_CoSELayout.idToLNode[id];var horizontalMargin=parseInt(_CoSELayout.compoundOrder[i].css("padding-left"));var verticalMargin=parseInt(_CoSELayout.compoundOrder[i].css("padding-top"));this.adjustLocations(tiledMemberPack[id],lCompoundNode.rect.x,lCompoundNode.rect.y,horizontalMargin,verticalMargin)}};_CoSELayout.prototype.repopulateZeroDegreeMembers=function(tiledPack){for(var i in tiledPack){var compound=this.cy.getElementById(i);var compoundNode=_CoSELayout.idToLNode[i];var horizontalMargin=parseInt(compound.css("padding-left"));var verticalMargin=parseInt(compound.css("padding-top"));this.adjustLocations(tiledPack[i],compoundNode.rect.x,compoundNode.rect.y,horizontalMargin,verticalMargin);var tempchildren=compound.scratch("coseBilkent").tempchildren;for(var i=0;i<tempchildren.length;i++){tempchildren[i].remove()}compound.remove()}};_CoSELayout.prototype.adjustLocations=function(organization,x,y,compoundHorizontalMargin,compoundVerticalMargin){x+=compoundHorizontalMargin;y+=compoundVerticalMargin;var left=x;for(var i=0;i<organization.rows.length;i++){var row=organization.rows[i];x=left;var maxHeight=0;for(var j=0;j<row.length;j++){var lnode=row[j];var node=this.cy.getElementById(lnode.id);lnode.rect.x=x;lnode.rect.y=y;x+=lnode.rect.width+organization.horizontalPadding;if(lnode.rect.height>maxHeight)maxHeight=lnode.rect.height}y+=maxHeight+organization.verticalPadding}};_CoSELayout.prototype.tileCompoundMembers=function(childGraphMap){var tiledMemberPack=[];for(var id in childGraphMap){var compoundNode=_CoSELayout.idToLNode[id];tiledMemberPack[id]=this.tileNodes(childGraphMap[id]);compoundNode.rect.width=tiledMemberPack[id].width+20;compoundNode.rect.height=tiledMemberPack[id].height+20}return tiledMemberPack};_CoSELayout.prototype.tileNodes=function(nodes){var self=this;var verticalPadding=typeof self.options.tilingPaddingVertical==="function"?self.options.tilingPaddingVertical.call():self.options.tilingPaddingVertical;var horizontalPadding=typeof self.options.tilingPaddingHorizontal==="function"?self.options.tilingPaddingHorizontal.call():self.options.tilingPaddingHorizontal;var organization={rows:[],rowWidth:[],rowHeight:[],width:20,height:20,verticalPadding:verticalPadding,horizontalPadding:horizontalPadding};var layoutNodes=[];for(var i=0;i<nodes.length;i++){var node=nodes[i];var lNode=_CoSELayout.idToLNode[node.id()];if(!node.scratch("coseBilkent")||!node.scratch("coseBilkent").dummy_parent_id){var owner=lNode.owner;owner.remove(lNode);this.gm.resetAllNodes();this.gm.getAllNodes()}layoutNodes.push(lNode)}layoutNodes.sort(function(n1,n2){if(n1.rect.width*n1.rect.height>n2.rect.width*n2.rect.height)return-1;if(n1.rect.width*n1.rect.height<n2.rect.width*n2.rect.height)return 1;return 0});for(var i=0;i<layoutNodes.length;i++){var lNode=layoutNodes[i];var cyNode=this.cy.getElementById(lNode.id).parent()[0];var minWidth=0;if(cyNode){minWidth=parseInt(cyNode.css("padding-left"))+parseInt(cyNode.css("padding-right"))}if(organization.rows.length==0){this.insertNodeToRow(organization,lNode,0,minWidth)}else if(this.canAddHorizontal(organization,lNode.rect.width,lNode.rect.height)){this.insertNodeToRow(organization,lNode,this.getShortestRowIndex(organization),minWidth)}else{this.insertNodeToRow(organization,lNode,organization.rows.length,minWidth)}this.shiftToLastRow(organization)}return organization};_CoSELayout.prototype.insertNodeToRow=function(organization,node,rowIndex,minWidth){var minCompoundSize=minWidth;if(rowIndex==organization.rows.length){var secondDimension=[];organization.rows.push(secondDimension);organization.rowWidth.push(minCompoundSize);organization.rowHeight.push(0)}var w=organization.rowWidth[rowIndex]+node.rect.width;if(organization.rows[rowIndex].length>0){w+=organization.horizontalPadding}organization.rowWidth[rowIndex]=w;if(organization.width<w){organization.width=w}var h=node.rect.height;if(rowIndex>0)h+=organization.verticalPadding;var extraHeight=0;if(h>organization.rowHeight[rowIndex]){extraHeight=organization.rowHeight[rowIndex];organization.rowHeight[rowIndex]=h;extraHeight=organization.rowHeight[rowIndex]-extraHeight}organization.height+=extraHeight;organization.rows[rowIndex].push(node)};_CoSELayout.prototype.getShortestRowIndex=function(organization){var r=-1;var min=Number.MAX_VALUE;for(var i=0;i<organization.rows.length;i++){if(organization.rowWidth[i]<min){r=i;min=organization.rowWidth[i]}}return r};_CoSELayout.prototype.getLongestRowIndex=function(organization){var r=-1;var max=Number.MIN_VALUE;for(var i=0;i<organization.rows.length;i++){if(organization.rowWidth[i]>max){r=i;max=organization.rowWidth[i]}}return r};_CoSELayout.prototype.canAddHorizontal=function(organization,extraWidth,extraHeight){var sri=this.getShortestRowIndex(organization);if(sri<0){return true}var min=organization.rowWidth[sri];if(min+organization.horizontalPadding+extraWidth<=organization.width)return true;var hDiff=0;if(organization.rowHeight[sri]<extraHeight){if(sri>0)hDiff=extraHeight+organization.verticalPadding-organization.rowHeight[sri]}var add_to_row_ratio;if(organization.width-min>=extraWidth+organization.horizontalPadding){add_to_row_ratio=(organization.height+hDiff)/(min+extraWidth+organization.horizontalPadding)}else{add_to_row_ratio=(organization.height+hDiff)/organization.width}hDiff=extraHeight+organization.verticalPadding;var add_new_row_ratio;if(organization.width<extraWidth){add_new_row_ratio=(organization.height+hDiff)/extraWidth}else{add_new_row_ratio=(organization.height+hDiff)/organization.width}if(add_new_row_ratio<1)add_new_row_ratio=1/add_new_row_ratio;if(add_to_row_ratio<1)add_to_row_ratio=1/add_to_row_ratio;return add_to_row_ratio<add_new_row_ratio};_CoSELayout.prototype.shiftToLastRow=function(organization){var longest=this.getLongestRowIndex(organization);var last=organization.rowWidth.length-1;var row=organization.rows[longest];var node=row[row.length-1];var diff=node.width+organization.horizontalPadding;if(organization.width-organization.rowWidth[last]>diff&&longest!=last){row.splice(-1,1);organization.rows[last].push(node);organization.rowWidth[longest]=organization.rowWidth[longest]-diff;organization.rowWidth[last]=organization.rowWidth[last]+diff;organization.width=organization.rowWidth[this.getLongestRowIndex(organization)];var maxHeight=Number.MIN_VALUE;for(var i=0;i<row.length;i++){if(row[i].height>maxHeight)maxHeight=row[i].height}if(longest>0)maxHeight+=organization.verticalPadding;var prevTotal=organization.rowHeight[longest]+organization.rowHeight[last];organization.rowHeight[longest]=maxHeight;if(organization.rowHeight[last]<node.height+organization.verticalPadding)organization.rowHeight[last]=node.height+organization.verticalPadding;var finalTotal=organization.rowHeight[longest]+organization.rowHeight[last];organization.height+=finalTotal-prevTotal;this.shiftToLastRow(organization)}};_CoSELayout.prototype.stop=function(){this.stopped=true;if(this.thread){this.thread.stop()}this.trigger("layoutstop");return this};_CoSELayout.prototype.processChildrenList=function(parent,children){var size=children.length;for(var i=0;i<size;i++){var theChild=children[i];this.options.eles.nodes().length;var children_of_children=theChild.children();var theNode;if(theChild.width()!=null&&theChild.height()!=null){theNode=parent.add(new CoSENode(_CoSELayout.layout.graphManager,new PointD(theChild.position("x"),theChild.position("y")),new DimensionD(parseFloat(theChild.width()),parseFloat(theChild.height()))))}else{theNode=parent.add(new CoSENode(this.graphManager))}theNode.id=theChild.data("id");_CoSELayout.idToLNode[theChild.data("id")]=theNode;if(isNaN(theNode.rect.x)){theNode.rect.x=0}if(isNaN(theNode.rect.y)){theNode.rect.y=0}if(children_of_children!=null&&children_of_children.length>0){var theNewGraph;theNewGraph=_CoSELayout.layout.getGraphManager().add(_CoSELayout.layout.newGraph(),theNode);this.processChildrenList(theNewGraph,children_of_children)}}};module.exports=function get(cytoscape){Thread=cytoscape.Thread;return _CoSELayout}},{"./CoSEConstants":141,"./CoSEEdge":142,"./CoSEGraph":143,"./CoSEGraphManager":144,"./CoSELayout":145,"./CoSENode":146,"./DimensionD":147,"./FDLayout":148,"./FDLayoutConstants":149,"./FDLayoutEdge":150,"./FDLayoutNode":151,"./HashMap":152,"./HashSet":153,"./IGeometry":154,"./IMath":155,"./Integer":156,"./LEdge":157,"./LGraph":158,"./LGraphManager":159,"./LGraphObject":160,"./LNode":161,"./Layout":162,"./LayoutConstants":163,"./Point":164,"./PointD":165,"./RandomSeed":166,"./RectangleD":167,"./Transform":168,"./UniqueIDGeneretor":169}],171:[function(require,module,exports){"use strict";var getLayout=require("./Layout");var register=function(cytoscape){var Layout=getLayout(cytoscape);cytoscape("layout","cose-bilkent",Layout)};if(typeof cytoscape!=="undefined"){register(cytoscape)}module.exports=register},{"./Layout":170}],172:[function(require,module,exports){var cytoscape=window.cytoscape=require("cytoscape");var panzoom=require("cytoscape-panzoom");var navigator=require("cytoscape-navigator");var cyqtip=require("cytoscape-qtip");var regCose=require("../../lib/js/cose-bilkent/src/index.js");var grid_guide=require("cytoscape-grid-guide");var undoRedo=require("cytoscape-undo-redo");var contextMenus=require("cytoscape-context-menus");var panzoomOpts=require("./PanzoomOptions.js");var styleSheet=require("./GraphStyleSheet.js");var edgeHandleOpts=require("./EdgeHandlesOptions.js");var LayoutProperties=require("./BackboneViews/LayoutPropertiesView.js");var GenomicDataExplorerView=require("./BackboneViews/GenomicDataExplorerView.js");var PathwayDetailsView=require("./BackboneViews/PathwayDetailsView.js");var GridOptionsView=require("./BackboneViews/GridOptionsView.js");var CBioPortalAccessView=require("./BackboneViews/CbioPortalAccessView.js");require("./FileOperationsManager.js");require("./OtherMenuOperations.js");require("./GenomicMenuOperations.js");require("./ViewOperationsManager.js");require("./GraphUtilities.js");require("bootstrap-select");var QtipManager=require("./QtipManager.js");var ContextMenuManager=require("./ContextMenuManager.js");var DragDropNodeAddPlugin=require("./DragDropNodeAddPlugin.js");var EditorActionsManager=require("./EditorActionsManager.js");var SaveLoadUtilities=require("./SaveLoadUtility.js");var CBioPortalAccessor=require("./cBioPortalAccessor.js");var notify=require("bootstrap-notify");module.exports=function(){function AppManager(isCollaborative,realTimeManager){this.isCollaborative=isCollaborative;this.realTimeManager=realTimeManager;this.init();this.createSampleMenu();this.createCBioPortalAccessModal()}AppManager.prototype.init=function(){this.initCyJS();this.initCyHandlers();var that=this;window.onresize=function(){that.placePanzoomAndOverlay()};if(!this.isCollaborative){$(document).keydown(function(e){if(e.which===89&&(e.ctrlKey||event.metaKey)){window.undoRedoManager.redo()}else if(e.which===90&&(e.ctrlKey||event.metaKey)){window.undoRedoManager.undo()}})}else{$('a[role="redo"]').hide();$('a[role="undo"]').hide()}window.appManager=this};AppManager.prototype.placePanzoomAndOverlay=function(){var offset=5;var topCy=$(".cyContainer").offset().top;var leftCy=$(".cyContainer").offset().left;var heightCy=$(".cyContainer").outerHeight();var widthCy=$(".cyContainer").outerWidth();var heightNavigator=$(".cytoscape-navigator-wrapper").outerHeight();var widthNavigator=$(".cytoscape-navigator-wrapper").outerWidth();var heightPanzoom=$(".cy-panzoom").outerHeight();var widthPanzoom=$(".cy-panzoom").outerWidth();$(".cytoscape-navigator-wrapper").css("top",heightCy+topCy-heightNavigator-offset);$(".cytoscape-navigator-wrapper").css("left",widthCy+leftCy-widthNavigator-offset);$(".cy-panzoom").css("top",topCy+5);$(".cy-panzoom").css("left",widthCy+leftCy-55)};AppManager.prototype.createSampleMenu=function(){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var templateData=JSON.parse(request.responseText);for(var key in templateData){if(templateData.hasOwnProperty(key)){var newTCGAMenu=$('<li class="dropdown-submenu" id="'+key+'">'+'<a href="#">'+key+"</a>"+"</li>");var newTCGAPathway=$('<ul class="dropdown-menu"></ul>');for(var i in templateData[key]){var newPath=templateData[key][i];var pName=newPath.replace(/-/gi," ").substring(0,newPath.length-4);var sampleLink=$('<li><a  path="'+newPath+'" href="#">'+pName+"</a></li>");sampleLink.on("click",sampleMenuClickHandler);if(key.includes("PanCancer")){$("#panCancerSubMenu").append(sampleLink)}else{newTCGAPathway.append(sampleLink);newTCGAMenu.append(newTCGAPathway)}}if(!key.includes("PanCancer")&&!key.includes("Creighton")){$("#sampleSubMenu").append(newTCGAMenu)}}}}};function sampleMenuClickHandler(event){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var allEles=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(allEles.nodes,allEles.edges);window.undoRedoManager.reset();window.appManager.pathwayDetailsView.updatePathwayProperties({fileName:allEles.title+".txt",pathwayTitle:allEles.title,pathwayDescription:allEles.description})}};var pathwayName=event.target.attributes[0].value;request.open("GET","/pathway?filename="+pathwayName);request.send()}request.open("GET","/getTemplateFileData");request.send()};AppManager.prototype.createCBioPortalAccessModal=function(){var portalAccessor=new CBioPortalAccessor;var self=this;this.portalAccessView=new CBioPortalAccessView({el:$("#cbioPortalAccessDiv")});portalAccessor.fetchCancerStudies(function(cancerStudies){self.portalAccessView.updateCancerStudies(cancerStudies)})};AppManager.prototype.initCyJS=function(){panzoom(cytoscape,$);cyqtip(cytoscape,$);regCose(cytoscape);navigator(cytoscape);grid_guide(cytoscape,$);undoRedo(cytoscape);contextMenus(cytoscape,$);window.edgeAddingMode=0;cy=window.cy=cytoscape({container:document.querySelector("#cy"),boxSelectionEnabled:true,autounselectify:false,wheelSensitivity:.1,style:styleSheet,ready:function(){},textureOnViewport:false,motionBlur:true,layout:{name:"preset"}});window.editorActionsManager=this.editorActionsManager=new EditorActionsManager(this.isCollaborative,this.realTimeManager,window.cy);this.qtipManager=new QtipManager(window.cy),this.editorActionsManager;this.cxtMenuManager=new ContextMenuManager(window.cy,this.editorActionsManager);this.dragDropNodeAddManager=new DragDropNodeAddPlugin(this.editorActionsManager);this.layoutPropertiesView=new LayoutProperties({el:$("#layoutPropertiesDiv"),editorActionsManager:this.editorActionsManager}).render();this.gridOptionsView=new GridOptionsView({el:$("#gridOptionsDiv")}).render();this.genomicDataExplorerView=new GenomicDataExplorerView({el:$("#genomicDataExplorerDiv"),editorActionsManager:this.editorActionsManager}).render();this.pathwayDetailsView=new PathwayDetailsView({el:$("#pathwayDetailsDiv")}).render();cy.panzoom(panzoomOpts);cy.nodeadd({components:[{container:$("#simpleNodeDiv"),nodeType:"Gene"},{container:$("#familyNodeDiv"),nodeType:"Family"},{container:$("#complexNodeDiv"),nodeType:"Complex",icon:"fa fa-square-o"},{container:$("#compartmentNodeDiv"),nodeType:"Compartment",icon:"fa fa-square-o"},{container:$("#processNodeDiv"),nodeType:"Process"}]});cy.edgehandles(edgeHandleOpts);var navDefaults={container:".cytoscape-navigator-wrapper",viewLiveFramerate:0,thumbnailEventFramerate:10,thumbnailLiveFramerate:false,dblClickDelay:200,removeCustomContainer:true,rerenderDelay:100};var nav=cy.navigator(navDefaults);this.placePanzoomAndOverlay()};AppManager.prototype.initCyHandlers=function(){var that=this;var tappedBefore;var tappedTimeout;cy.on("tap",function(event){var tappedNow=event.cyTarget;if(tappedTimeout&&tappedBefore){clearTimeout(tappedTimeout)}if(tappedBefore===tappedNow){tappedNow.trigger("doubleTap");tappedBefore=null}else{tappedTimeout=setTimeout(function(){tappedBefore=null},300);tappedBefore=tappedNow}});cy.on("doubleTap","node",function(e){var eventIsDirect=e.cyTarget===this;if(eventIsDirect){$(".qtip").remove();that.qtipManager.addQtipToElements(e.cyTarget);var api=this.qtip("api");if(api){api.show()}}});cy.on("select","node",function(e){window.editorActionsManager.pushSelectedNodeStack(e.cyTarget)});cy.on("unselect","node",function(e){window.editorActionsManager.removeElementFromSelectedNodeStack(e.cyTarget)});cy.on("free","node",function(e){var selectedNodes=cy.nodes(":selected");var nodes=e.cyTarget;nodes=nodes.union(nodes.descendants());nodes=nodes.union(selectedNodes);that.editorActionsManager.moveElements(nodes)});cy.on("layoutstop",function(event){that.editorActionsManager.postLayout()});cy.on("add","node",function(event){cy.style().update();cy.forceRender()})};return AppManager}()},{"../../lib/js/cose-bilkent/src/index.js":171,"./BackboneViews/CbioPortalAccessView.js":174,"./BackboneViews/GenomicDataExplorerView.js":175,"./BackboneViews/GridOptionsView.js":176,"./BackboneViews/LayoutPropertiesView.js":177,"./BackboneViews/PathwayDetailsView.js":178,"./ContextMenuManager.js":180,"./DragDropNodeAddPlugin.js":181,"./EdgeHandlesOptions.js":182,"./EditorActionsManager.js":183,"./FileOperationsManager.js":184,"./GenomicMenuOperations.js":186,"./GraphStyleSheet.js":187,"./GraphUtilities.js":188,"./OtherMenuOperations.js":189,"./PanzoomOptions.js":190,"./QtipManager.js":191,"./SaveLoadUtility.js":195,"./ViewOperationsManager.js":196,"./cBioPortalAccessor.js":197,"bootstrap-notify":2,"bootstrap-select":3,cytoscape:113,"cytoscape-context-menus":17,"cytoscape-grid-guide":24,"cytoscape-navigator":28,"cytoscape-panzoom":29,"cytoscape-qtip":30,"cytoscape-undo-redo":31}],173:[function(require,module,exports){var BioGeneView=Backbone.View.extend({render:function(){var variables={geneDescription:this.model.geneDescription,geneAliases:this.parseDelimitedInfo(this.model.geneAliases,":",",",null),geneDesignations:this.parseDelimitedInfo(this.model.geneDesignations,":",",",null),geneLocation:this.model.geneLocation,geneMim:this.model.geneMim,geneId:this.model.geneId,geneUniprotId:this.extractFirstUniprotId(this.model.geneUniprotMapping),geneUniprotLinks:this.generateUniprotLinks(this.model.geneUniprotMapping),geneSummary:this.model.geneSummary};var template=_.template($("#biogene-template").html());template=template(variables);this.$el.html(template);this.format(this.model);return this.$el},format:function(){if(this.model.geneDescription==undefined)this.$el.find(".biogene-description").hide();if(this.model.geneAliases==undefined)this.$el.find(".biogene-aliases").hide();if(this.model.geneDesignations==undefined)this.$el.find(".biogene-designations").hide();if(this.model.geneChromosome==undefined)this.$el.find(".biogene-chromosome").hide();if(this.model.geneLocation==undefined)this.$el.find(".biogene-location").hide();if(this.model.geneMim==undefined)this.$el.find(".biogene-mim").hide();if(this.model.geneId==undefined)this.$el.find(".biogene-id").hide();if(this.model.geneUniprotMapping==undefined)this.$el.find(".biogene-uniprot-links").hide();if(this.model.geneSummary==undefined)this.$el.find(".node-details-summary").hide();var expanderOpts={slicePoint:100,expandPrefix:" ",expandText:" (...)",userCollapseText:" (show less)",moreClass:"expander-read-more",lessClass:"expander-read-less",detailClass:"expander-details",expandEffect:"fadeIn",collapseEffect:"fadeOut"};expanderOpts.slicePoint=2;expanderOpts.widow=0},generateUniprotLinks:function(mapping){var formatter=function(id){var tpl=_.template($("#uniprot-link-template").html());tpl=tpl({id:id});return tpl};if(mapping==undefined||mapping==null){return""}if(mapping.indexOf(":")<0){return""}else{mapping=mapping.substring(mapping.indexOf(":")+1);return", "+this.parseDelimitedInfo(mapping,":",",",formatter)}},extractFirstUniprotId:function(mapping){if(mapping==undefined||mapping==null){return""}var parts=mapping.split(":");if(parts.length>0){return parts[0]}return""},parseDelimitedInfo:function(info,delimiter,separator,formatter){
-if(info==undefined||info==null){return info}var text="";var parts=info.split(delimiter);if(parts.length>0){if(formatter){text=formatter(parts[0])}else{text=parts[0]}}for(var i=1;i<parts.length;i++){text+=separator+" ";if(formatter){text+=formatter(parts[i])}else{text+=parts[i]}}return text}});module.exports=BioGeneView},{}],174:[function(require,module,exports){var CBioPortalAccessor=require("../cBioPortalAccessor.js");var cbioPortalAccessView=Backbone.View.extend({cachedLoadingTemplate:_.template($("#loading-small-template").html())(),events:{"click #getProfileData":"fetchProfileData"},initialize:function(options){this.portalAccessor=new CBioPortalAccessor;this.$el.find("#cancerDropDown").append("<h4>Please Wait Loading Cancer Studies</h4>");this.$el.find("#cancerDropDown").append(this.cachedLoadingTemplate)},updateCancerStudies:function(cancerStudies){this.cancerStudies=cancerStudies;this.updateView()},updateView:function(){var self=this;this.$el.find("#cancerDropDown").empty();this.$el.find("#dataTypeSelection").empty();this.$el.find("#cancerDropDown").append("<h4>Select Cancer Study</h4>");var cancerStudiesDropDown=$('<select  id="cancerSelectBox" class="selectpicker" title="Select a Cancer Study"></select>');for(var cancerName in this.cancerStudies){cancerStudiesDropDown.append("<option key="+cancerName+">"+this.cancerStudies[cancerName][1]+"</option>")}$("#cancerDropDown").append(cancerStudiesDropDown);cancerStudiesDropDown.selectpicker({liveSearch:true,container:"body",liveSearchPlaceholder:"Search Cancer Study"});$("#cancerSelectBox").change(function(){self.$el.find("#dataTypeSelection").empty();self.$el.find("#dataTypeSelection").append(self.cachedLoadingTemplate);var key=$(this).find("option:selected").attr("key");self.currenCancerStudy=self.cancerStudies[key];var createDataTypeSelectionCallback=function(cancerData){self.$el.find("#dataTypeSelection").empty();var dataTypes={};for(var obj in cancerData){var dataType=self.portalAccessor.getDataType(obj);dataTypes[dataType]=cancerData[obj]}self.$el.find("#dataTypeSelection").append("<h4>Data Types</h4>");for(var obj in dataTypes){var newCheckbox=$('<div class="checkbox">'+"<label>"+'<input type="checkbox" cancerKey="'+dataTypes[obj][0]+'" value="">'+obj+"</label>"+"</div>");newCheckbox.find('input[type="checkbox"]').on("click",function(evt){var checkedNum=self.$el.find('input[type="checkbox"]:checked').length;if(checkedNum>=1)self.showSubmitButton();else if(checkedNum==0)self.hideSubmitButton()});self.$el.find("#dataTypeSelection").append(newCheckbox)}};self.portalAccessor.getSupportedGeneticProfiles(key,createDataTypeSelectionCallback)})},render:function(){this.hideSubmitButton();if(!this.cancerStudies){this.$el.modal("show");return}this.updateView();this.$el.modal("show")},hideSubmitButton:function(){$("#getProfileData").hide()},showSubmitButton:function(){$("#getProfileData").show()},fetchProfileData:function(){var checkedDataTypes=this.$el.find('input[type="checkbox"]:checked');var geneSymbols=window.editorActionsManager.getGeneSymbols();var self=this;for(var i=0;i<checkedDataTypes.length;i++){self.portalAccessor.getProfileData({caseSetId:self.currenCancerStudy[0],geneticProfileId:$(checkedDataTypes[i]).attr("cancerkey"),genes:geneSymbols},function(data){window.editorActionsManager.addPortalGenomicData(data)})}this.$el.modal("toggle")}});module.exports=cbioPortalAccessView},{"../cBioPortalAccessor.js":197}],175:[function(require,module,exports){var genomicDataExplorer=Backbone.View.extend({cachedTpl:_.template($("#genomicDataExplorerTemplate").html()),events:{"click #save-genomic":"saveHandler"},initialize:function(options){this.$el.append(this.cachedTpl());this.editorActionsManagerRef=options.editorActionsManager;this.editorActionsManagerRef.registerGenomicDataObserver(this);this.renderEmptyView()},render:function(){},renderEmptyView:function(){this.$el.find(".genomicDataContentDiv").append('<h4 class="modal-title">There is currently no data to show</h4>');this.$el.find("#save-genomic").hide()},saveHandler:function(event){var dataMap={};this.$el.find(".genomicDataContentDiv label").each(function(){var jqEl=$(this);var cancerType=jqEl.text();var isChecked=jqEl.find("input").is(":checked");dataMap[cancerType]=isChecked});this.editorActionsManagerRef.updateGenomicDataVisibility(dataMap);this.$el.modal("toggle")},notify:function(data){this.$el.find(".genomicDataContentDiv").empty();var cancerTypes=this.editorActionsManagerRef.genomicDataOverlayManager.visibleGenomicDataMapByType;if(cancerTypes&&Object.keys(cancerTypes).length===0){this.renderEmptyView()}else{this.$el.find(".genomicDataContentDiv").append('<h4 class="modal-title">Data Set To Show:</h4>');var checkboxDiv=$('<div class="genomicChecboxDiv"></div>');for(var cancerType in cancerTypes){var checkboxContent=$('<label class="checkbox"><input type="checkbox" value="">'+cancerType+"</label>");checkboxContent.find("input").attr("checked",cancerTypes[cancerType]);checkboxDiv.append(checkboxContent)}this.$el.find(".genomicDataContentDiv").append(checkboxDiv);this.$el.find("#save-genomic").show()}}});module.exports=genomicDataExplorer},{}],176:[function(require,module,exports){var gridOptionsView=Backbone.View.extend({currentProperties:null,events:{"click #applyGridOptions":"saveProperties"},initialize:function(options){this.defaultGridGuideOptions={snapToGrid:false,discreteDrag:false,guidelines:true,resize:false,gridSpacing:20,parentPadding:false,drawGrid:false,guidelinesStackOrder:4,guidelinesTolerance:2,guidelinesStyle:{lineWidth:2,strokeStyle:"#000000",lineDash:[7,15]}};this.copyProperties(this.defaultGridGuideOptions);cy.gridGuide(this.currentProperties)},copyProperties:function(params){this.currentProperties=_.clone(params)},render:function(){var templateProperties=_.clone(this.currentProperties);this.template=_.template($("#gridOptionsTemplate").html());var tplContent=this.template(templateProperties);this.$el.empty();this.$el.append(tplContent);this.$el.find("#colorPickerDiv").colorpicker();this.delegateEvents()},saveProperties:function(event){this.currentProperties.gridSpacing=Number(this.$el.find("#gridSize").val());this.currentProperties.drawGrid=this.$el.find("#showGrid").is(":checked");this.currentProperties.guidelines=this.$el.find("#showGuides").is(":checked");this.currentProperties.snapToGrid=this.$el.find("#snapToGrid").is(":checked");this.currentProperties.guidelinesStyle.strokeStyle=this.$el.find("#colorPickerInput").val();cy.gridGuide(this.currentProperties);this.$el.modal("toggle")},changeParameters:function(){this.$el.find("#gridSize").val(this.currentProperties.gridSize);this.$el.find("#showGrid")[0].checked=this.currentProperties.showGrid;this.$el.find("#showGuides")[0].checked=this.currentProperties.showGuides;this.$el.find("#colorPickerInput").val(this.currentProperties.guidelinesStyle.strokeStyle)},defaultLayoutHandler:function(event){},notify:function(){}});module.exports=gridOptionsView},{}],177:[function(require,module,exports){var layoutProps=Backbone.View.extend({currentLayoutProperties:null,events:{"click #save-layout":"saveLayoutHandler","click #default-layout":"defaultLayoutHandler"},initialize:function(options){this.editorActionsManagerRef=options.editorActionsManager;this.copyProperties(this.editorActionsManagerRef.layoutProperties);this.editorActionsManagerRef.registerObserver(this)},copyProperties:function(params){this.currentLayoutProperties=_.clone(params)},render:function(){var templateProperties=_.clone(this.currentLayoutProperties);this.template=_.template($("#layoutPropertiesTemplate").html());var tplContent=this.template(templateProperties);this.$el.empty();this.$el.append(tplContent);this.delegateEvents()},saveLayoutHandler:function(event){this.currentLayoutProperties.nodeRepulsion=Number(this.$el.find("#node-repulsion").val());this.currentLayoutProperties.nodeOverlap=Number(this.$el.find("#node-overlap").val());this.currentLayoutProperties.idealEdgeLength=Number(this.$el.find("#ideal-edge-length").val());this.currentLayoutProperties.edgeElasticity=Number(this.$el.find("#edge-elasticity").val());this.currentLayoutProperties.nestingFactor=Number(this.$el.find("#nesting-factor").val());this.currentLayoutProperties.gravity=Number(this.$el.find("#gravity").val());this.currentLayoutProperties.numIter=Number(this.$el.find("#num-iter").val());this.currentLayoutProperties.gravityRangeCompound=Number(this.$el.find("#comp-gravRange").val());this.currentLayoutProperties.gravityCompound=Number(this.$el.find("#comp-grav").val());this.currentLayoutProperties.gravityRange=Number(this.$el.find("#grav-range").val());this.currentLayoutProperties.tile=this.$el.find("#tile").is(":checked");this.currentLayoutProperties.animate=this.$el.find("#animate").is(":checked");this.currentLayoutProperties.randomize=!this.$el.find("#randomize").is(":checked");this.editorActionsManagerRef.saveLayoutProperties(this.currentLayoutProperties);this.$el.modal("toggle")},changeParameters:function(){this.$el.find("#node-repulsion").val(this.currentLayoutProperties.nodeRepulsion);this.$el.find("#node-overlap").val(this.currentLayoutProperties.nodeOverlap);this.$el.find("#ideal-edge-length").val(this.currentLayoutProperties.idealEdgeLength);this.$el.find("#edge-elasticity").val(this.currentLayoutProperties.edgeElasticity);this.$el.find("#nesting-factor").val(this.currentLayoutProperties.nestingFactor);this.$el.find("#gravity").val(this.currentLayoutProperties.gravity);this.$el.find("#comp-gravRange").val(this.currentLayoutProperties.gravityRangeCompound);this.$el.find("#comp-grav").val(this.currentLayoutProperties.gravityCompound);this.$el.find("#grav-range").val(this.currentLayoutProperties.gravityRange);this.$el.find("#num-iter").val(this.currentLayoutProperties.numIter);this.$el.find("#tile")[0].checked=this.currentLayoutProperties.tile;this.$el.find("#animate")[0].checked=this.currentLayoutProperties.animate;this.$el.find("#randomize")[0].checked=!this.currentLayoutProperties.randomize},defaultLayoutHandler:function(event){this.copyProperties(this.editorActionsManagerRef.defaultLayoutProperties);this.changeParameters()},notify:function(){this.copyProperties(this.editorActionsManagerRef.layoutProperties);this.changeParameters()}});module.exports=layoutProps},{}],178:[function(require,module,exports){var pathwayDetails=Backbone.View.extend({currentLayoutProperties:null,events:{"click #savePathwayDetails":"saveHandler"},initialize:function(options){this.properties={pathwayName:"pathway.txt",pathwayTitle:"New Pathway",pathwayDescription:""}},saveHandler:function(event){this.properties.pathwayName=this.$el.find("#pName").val();this.properties.pathwayTitle=this.$el.find("#pTitle").val();this.properties.pathwayDescription=this.$el.find("#pDesc").val();this.$el.modal("toggle")},updatePathwayProperties:function(data){this.properties.pathwayName=data.fileName;this.properties.pathwayTitle=data.pathwayTitle;this.properties.pathwayDescription=data.pathwayDescription},copyProperties:function(params){this.currentLayoutProperties=_.clone(params)},render:function(){this.template=_.template($("#pathwayDetailsTemplate").html());var tplContent=this.template(this.properties);this.$el.empty();this.$el.append(tplContent);this.delegateEvents();this.$el.find("input").on("keypress",function(e){if(e.keyCode==13){e.preventDefault()}});return this}});module.exports=pathwayDetails},{}],179:[function(require,module,exports){var WelcomePageView=Backbone.View.extend({cachedTpl:_.template($("#welcomePageTemplate").html()),events:{"click #localUsage":"localUsageHandler","click #collaborativeUsage":"collaborativeUsageHandler","click .continueButton":"continueButtonHandler"},initialize:function(options){this.localUsageCallback=options.localUsageCallback;this.collaborativeUsageCallback=options.collaborativeUsageCallback;this.modelSelectionMap={NONE:-1,LOCAL:0,COLLAB:1};this.modelSelection=this.modelSelectionMap.NONE},render:function(){this.$el.empty();this.$el.append(this.cachedTpl());this.$el.find("#localUsage").popover({container:"body",content:"Create a pathway individually",placement:"left",delay:100,trigger:"manual"});this.$el.find("#collaborativeUsage").popover({container:"body",html:true,content:function(){return $("#collaborativePopoverContent").html()},placement:"right",delay:200,trigger:"manual"})},localUsageHandler:function(event){if(this.modelSelection==this.modelSelectionMap.LOCAL)return;$(".popover").popover("hide");this.$el.find(".welcomePageCheckable").removeClass("active");$(event.currentTarget).addClass("active");this.$el.find("#localUsage").popover("show");this.$el.find(".continueRow").css("visibility","visible");this.modelSelection=this.modelSelectionMap.LOCAL},collaborativeUsageHandler:function(event){if(this.modelSelection==this.modelSelectionMap.COLLAB)return;$(".popover").popover("hide");this.$el.find(".welcomePageCheckable").removeClass("active");$(event.currentTarget).addClass("active");this.$el.find("#collaborativeUsage").popover("show");this.$el.find(".continueRow").css("visibility","visible");this.modelSelection=this.modelSelectionMap.COLLAB},continueButtonHandler:function(event){$(".popover").hide();var self=this;this.$el.find(".welcomePageLoading").show();function postHandler(){self.postSuccess()}if(this.modelSelection!=this.modelSelectionMap.NONE){if(this.modelSelection==this.modelSelectionMap.LOCAL){this.localUsageCallback(postHandler)}else if(this.modelSelection==this.modelSelectionMap.COLLAB){this.collaborativeUsageCallback(postHandler)}}},postSuccess:function(){this.$el.empty();this.$el.fadeOut(800)}});module.exports=WelcomePageView},{}],180:[function(require,module,exports){module.exports=function(){"use strict";var CxtMenu=function(cy,editorActionsManager){this.cy=cy;this.editorActionsManager=editorActionsManager;this.init()};CxtMenu.prototype.init=function(){var classRef=this;var options={menuItems:[{id:"remove",title:"Delete",selector:"node, edge",onClickFunction:function(event){var ele=event.cyTarget;var selectedElements=cy.nodes(":selected").union(ele);classRef.editorActionsManager.removeElement(selectedElements)},disabled:false,hasTrailingDivider:true,coreAsWell:false},{id:"addSelected",title:"Add selected into this",selector:"node",onClickFunction:function(event){var ele=event.cyTarget;var selectedNodes=cy.nodes(":selected");var containerType=ele.data("type");var validNodes=cy.collection();if(ele._private.data["type"]==="GENE"||selectedNodes.size()<1){return}else{var notValid=false;selectedNodes.forEach(function(tmpNode,i){if(ele.id()==tmpNode.id()){notValid=true;return false}if(tmpNode.isParent()){notValid=isChildren(tmpNode,ele);if(notValid){return false}}});if(notValid){return}}selectedNodes.forEach(function(tmpNode,i){if(containerType=="FAMILY"||containerType=="COMPLEX"){if(tmpNode.data("type")!="COMPARTMENT"&&tmpNode.data("type")!="PROCESS"){validNodes=validNodes.add(tmpNode)}}else{validNodes=validNodes.add(tmpNode)}});var compId=ele.id();classRef.editorActionsManager.changeParents(validNodes,compId)},disabled:false,hasTrailingDivider:true,coreAsWell:false},{id:"removeSelected",title:"Remove selected from parent",selector:"node",onClickFunction:function(event){var ele=event.cyTarget;var selectedNodes=cy.nodes(":selected").union(ele);var notValid=false;selectedNodes.forEach(function(tmpNode,i){if(tmpNode.isParent()){notValid=isChildren(tmpNode,ele);if(notValid){return false}}});if(notValid){return}classRef.editorActionsManager.changeParents(selectedNodes,null)},disabled:false,hasTrailingDivider:true,coreAsWell:false},{id:"performLayout",title:"Perform Layout",coreAsWell:true,onClickFunction:function(event){classRef.editorActionsManager.performLayout()},disabled:false,hasTrailingDivider:true}],menuItemClasses:[],contextMenuClasses:[]};this.cy.contextMenus(options)};window.edgeAddingMode=false;function isChildren(node,queryNode){var parent=queryNode.parent()[0];while(parent){if(parent.id()==node.id()){return true}parent=parent.parent()[0]}return false}return CxtMenu}()},{}],181:[function(require,module,exports){module.exports=function($,$$){"use strict";var NodeAdd=function(editorActionsManager){this.editorActionsManager=editorActionsManager;this.initNodeAdd()};NodeAdd.prototype.initNodeAdd=function(){var nodeAddClass=this;var defaults={height:30,width:30,padding:5,backgroundColorDiv:"#fbfbfb",borderColorDiv:"#fff",borderWidthDiv:"0px",borderRadiusDiv:"5px",icon:"",nodeParams:function(){return{}}};$.fn.cytoscapeNodeadd=function(params){var options=$.extend(true,{},defaults,params);var fn=params;var functions={destroy:function(){var $this=$(this);$this.find(".ui-cytoscape-nodeadd").remove()},init:function(){return $(this).each(function(){var components=options.components;for(var index in components){var component=components[index];var dragContainer=component.container;var explanationText=component.explanationText;var $nodeadd=$('<div class="ui-cytoscape-nodeadd"></div>');dragContainer.append($nodeadd);var $nodeDragHandle=$('<div class="ui-cytoscape-nodeadd-nodediv">                                                 <span id="ui-cytoscape-nodeadd-icon" class="draggable" nodeType="'+component.nodeType+'">                                                  <img style="width:110px;" src="./assets/'+component.nodeType+'.png" alt="" />                                                </span>                                              </div>');$nodeadd.append($nodeDragHandle);$nodeDragHandle.bind("mousedown",function(e){e.stopPropagation();e.preventDefault()});dragContainer.find(".ui-cytoscape-nodeadd-nodediv").css({background:options.backgroundColorDiv,border:options.borderWidthDiv+" solid "+options.borderColorDiv,"border-radius":options.borderRadiusDiv});dragContainer.find("#ui-cytoscape-nodeadd-icon").draggable({helper:"clone",cursor:"pointer"})}var $container=$(this);$container.droppable({activeClass:"ui-state-highlight",drop:function(event,ui){$container.removeClass("ui-state-highlight");var currentOffset=$container.offset();var relX=event.pageX-currentOffset.left;var relY=event.pageY-currentOffset.top;var nodeType=$(ui.helper).attr("nodeType").toUpperCase();var cy=$container.cytoscape("get");var nodeMap={};var parentMap={};cy.nodes().forEach(function(node,i){var nodeBbox=node.renderedBoundingBox();if(relX<=nodeBbox.x2&&relX>=nodeBbox.x1&&(relY<=nodeBbox.y2&&relY>=nodeBbox.y1)&&node.data().type!="GENE"){if(node.children().length>0){parentMap[node.id()]=true}if(parentMap[node._private.data.parent]){delete nodeMap[node._private.data.parent]}nodeMap[node.id()]=node}});var parent=nodeMap[Object.keys(nodeMap)[0]];var nodeData={type:nodeType,name:"New "+$(ui.helper).attr("nodeType")};if(parent){if(parent.data().type=="FAMILY"||parent.data().type=="COMPLEX"){if(nodeType!="COMPARTMENT"&&nodeType!="PROCESS"){nodeData.parent=parent.id()}}else{nodeData.parent=parent.id()}}relX=relX/cy.zoom()+cy.extent().x1;relY=relY/cy.zoom()+cy.extent().y1;nodeAddClass.editorActionsManager.addNode(nodeData,{x:relX,y:relY})}})})}};if(functions[fn]){return functions[fn].apply(this,Array.prototype.slice.call(arguments,1))}else if(typeof fn=="object"||!fn){return functions.init.apply(this,arguments)}else{$.error("No such function `"+fn+"` for jquery.cytoscapenodeadd")}return $(this)};$.fn.cynodeadd=$.fn.cytoscapeNodeadd;$$("core","nodeadd",function(options){var cy=this;$(cy.container()).cytoscapeNodeadd(options)})};return NodeAdd}(window.$,window.cytoscape)},{}],182:[function(require,module,exports){var edgeHandleDefaults={preview:true,stackOrder:4,handleSize:10,handleColor:"#1abc9c",handleLineType:"ghost",handleLineWidth:1,handleNodes:"node",hoverDelay:1,cxt:false,enabled:false,toggleOffOnLeave:true,edgeType:function(sourceNode,targetNode){return"flat"},loopAllowed:function(node){return false},nodeLoopOffset:-50,nodeParams:function(sourceNode,targetNode){return{}},edgeParams:function(sourceNode,targetNode,i){return{}},start:function(sourceNode){var type=this.getGlobalEdgeType();cy.edgehandles("option","ghostEdgeType",type)},complete:function(sourceNode,targetNodes,addedEntities){cy.remove(addedEntities);window.editorActionsManager.addEdge({source:sourceNode.id(),target:targetNodes[0].id(),type:this.getGlobalEdgeType()})},stop:function(sourceNode){$(".edge-palette a").blur().removeClass("active");window.edgeAddingMode==-1;cy.edgehandles("disable")},getGlobalEdgeType:function(){var type="NONE";if(window.edgeAddingMode==1){type="ACTIVATES"}else if(window.edgeAddingMode==2){type="INHIBITS"}else if(window.edgeAddingMode==3){type="INDUCES"}else if(window.edgeAddingMode==4){type="REPRESSES"}else if(window.edgeAddingMode==5){type="BINDS"}return type}};module.exports=edgeHandleDefaults},{}],183:[function(require,module,exports){var GenomicDataOverlayManager=require("./GenomicDataOverlayManager.js");var SVGExporter=require("./SVGExporter.js");module.exports=function(){"use strict";var EditorActionsManager=function(isCollaborative,realtimeManager,cyInst){this.cy=cyInst;this.isCollaborative=isCollaborative;if(this.isCollaborative&&realtimeManager)this.realTimeManager=realtimeManager;this.defaultLayoutProperties={name:"cose-bilkent",nodeRepulsion:4500,nodeOverlap:10,idealEdgeLength:50,edgeElasticity:.45,nestingFactor:.1,gravity:.15,numIter:2500,tile:true,animate:"end",randomize:false,gravityRangeCompound:1.5,gravityCompound:1,gravityRange:1.5};this.FIT_CONSTANT=50;this.layoutProperties=_.clone(this.defaultLayoutProperties);this.observers=[];this.genomicDataOverlayManager=new GenomicDataOverlayManager;this.svgExporter=new SVGExporter;this.selecteNodeStack={};window.undoRedoManager=cy.undoRedo();window.undoRedoManager.action("changePositions",this.doChangePosition,this.undoChangePosition);window.undoRedoManager.action("changeName",this.doChangename,this.undoChangeName)};EditorActionsManager.prototype.doChangename=function(args){var currentName=args.node.data("name");var newArgs={node:args.node,newName:args.newName,oldName:currentName};args.node.data("name",args.newName);args.node.css("content",args.newName);return newArgs};EditorActionsManager.prototype.undoChangeName=function(args){var currentName=args.node.data("name");var newArgs={node:args.node,newName:args.oldName,oldName:currentName};args.node.data("name",args.oldName);args.node.css("content",args.oldName);return newArgs};EditorActionsManager.prototype.doChangePosition=function(movedNodes){var newMovedNodes=[];for(var i=0;i<movedNodes.length;i++){var currentNodePosition={x:movedNodes[i].node.position().x,y:movedNodes[i].node.position().y};newMovedNodes.push({node:movedNodes[i].node,oldPosition:currentNodePosition,nextPosition:movedNodes[i].nextPosition});movedNodes[i].node.position(movedNodes[i].nextPosition)}return newMovedNodes};EditorActionsManager.prototype.undoChangePosition=function(movedNodes){var newMovedNodes=[];for(var i=0;i<movedNodes.length;i++){var currentNodePosition={x:movedNodes[i].node.position().x,y:movedNodes[i].node.position().y};newMovedNodes.push({node:movedNodes[i].node,oldPosition:movedNodes[i].oldPosition,nextPosition:currentNodePosition});movedNodes[i].node.position(movedNodes[i].oldPosition)}return newMovedNodes};EditorActionsManager.prototype.postLayout=function(){if(this.isCollaborative){this.editorActionsManager.moveElements(cy.nodes());var newState={zoomLevel:cy.zoom(),panLevel:cy.pan()};this.editorActionsManager.updateGlobalOptions(newState)}};EditorActionsManager.prototype.getGeneSymbols=function(){var geneSymbols=[];this.cy.nodes().forEach(function(gene){geneSymbols.push(gene.data().name)});return geneSymbols};EditorActionsManager.prototype.pushSelectedNodeStack=function(ele){this.selecteNodeStack[ele.id()]=ele};EditorActionsManager.prototype.removeElementFromSelectedNodeStack=function(ele){var nodeID=ele.id();if(nodeID in this.selecteNodeStack)delete this.selecteNodeStack[ele.id()]};EditorActionsManager.prototype.clearSelectedNodeStack=function(){this.selecteNodeStack={}};EditorActionsManager.prototype.exportSVG=function(){return this.svgExporter.exportGraph(this.cy.nodes(),this.cy.edges())};EditorActionsManager.prototype.registerObserver=function(observer){this.observers.push(observer)};EditorActionsManager.prototype.notifyObservers=function(){for(var i in this.observers){var observer=this.observers[i];observer.notify()}};EditorActionsManager.prototype.registerGenomicDataObserver=function(observer){this.genomicDataOverlayManager.registerObserver(observer)};EditorActionsManager.prototype.updateGenomicDataVisibility=function(dataMap){if(this.isCollaborative){this.realTimeManager.clearGenomicVisData();this.realTimeManager.addGenomicVisibilityData("visMap",dataMap)}else{for(var _key in dataMap){this.genomicDataOverlayManager.updateGenomicDataVisibility(_key,dataMap[_key])}this.genomicDataOverlayManager.showGenomicData()}};EditorActionsManager.prototype.getGlobalOptions=function(){return{zoomLevel:cy.zoom(),panLevel:cy.pan()}};EditorActionsManager.prototype.changeGlobalOptions=function(globalOptions){cy.zoom(globalOptions.zoomLevel);cy.pan(globalOptions.panLevel)};EditorActionsManager.prototype.updateGlobalOptions=function(newOptions){if(this.isCollaborative)this.realTimeManager.updateGlobalOptions(newOptions)};EditorActionsManager.prototype.saveLayoutProperties=function(newLayoutProps){if(this.isCollaborative){this.realTimeManager.updateLayoutProperties(newLayoutProps)}else{this.layoutProperties=_.clone(newLayoutProps)}};EditorActionsManager.prototype.updateLayoutPropertiesCallback=function(newLayoutProps){this.layoutProperties=_.clone(newLayoutProps);this.notifyObservers()};EditorActionsManager.prototype.performLayout=function(){window.undoRedoManager.do("layout",{options:this.layoutProperties,eles:null,zoom:cy.zoom(),pan:cy.pan()})};EditorActionsManager.prototype.addNode=function(nodeData,posData){if(this.isCollaborative){this.addNewNodeToRealTime(nodeData,posData)}else{this.addNodetoCy(nodeData,posData)}};EditorActionsManager.prototype.addNodes=function(nodes){for(var i in nodes){this.addNode(nodes[i].data,nodes[i].position)}};EditorActionsManager.prototype.addNodesCy=function(nodes){var nodeArr=[];for(var i in nodes){var nodeData=nodes[i].data;var posData=nodes[i].position;var newNode={group:"nodes",data:nodeData};if(nodeData.parent===undefined){delete newNode.data.parent}if(posData){newNode.position={x:posData.x,y:posData.y}}nodeArr[i]=newNode}this.cy.add(nodeArr);this.cy.nodes().updateCompoundBounds()};EditorActionsManager.prototype.addNodetoCy=function(nodeData,posData){var newNode={group:"nodes",data:nodeData};if(nodeData.parent===undefined){delete newNode.data.parent}if(posData){newNode.position={x:posData.x,y:posData.y}}this.cy.nodes().updateCompoundBounds();window.undoRedoManager.do("add",newNode)};EditorActionsManager.prototype.realTimeNodeAddRemoveEventCallBack=function(event){var node=event.newValue;var nodeID=event.property;if(node===null){var cyEle=this.cy.$("#"+nodeID);this.removeElementCy(cyEle);this.cy.nodes().updateCompoundBounds()}else{this.addNewNodeLocally(node)}};EditorActionsManager.prototype.addNewNodeLocally=function(realtimeNode){var nodeID=this.realTimeManager.getCustomObjId(realtimeNode);var nodeData={id:nodeID,type:realtimeNode.type,name:realtimeNode.name,parent:realtimeNode.parent};if(realtimeNode.x!="undefined"&&realtimeNode.y!="undefined"){this.addNodetoCy(nodeData,{x:realtimeNode.x,y:realtimeNode.y})}else{this.addNodetoCy(nodeData)}this.cy.nodes().updateCompoundBounds()};EditorActionsManager.prototype.addNewNodeToRealTime=function(nodeData,posData){this.realTimeManager.addNewNode(nodeData,posData)};EditorActionsManager.prototype.addEdge=function(edgeData){if(this.isCollaborative){this.addNewEdgeRealTime(edgeData)}else{this.addNewEdgetoCy(edgeData)}};EditorActionsManager.prototype.addEdges=function(edges){for(var i in edges){this.addEdge(edges[i].data)}};EditorActionsManager.prototype.addEdgesCy=function(edges){var newEdges=[];for(var i in edges){var newEdge={group:"edges",data:edges[i].data};newEdges.push(newEdge)}cy.add(newEdges)};EditorActionsManager.prototype.addNewEdgeRealTime=function(edgeData){this.realTimeManager.addNewEdge(edgeData)};EditorActionsManager.prototype.addNewEdgetoCy=function(edgeData){var newEdge={group:"edges",data:edgeData};window.undoRedoManager.do("add",newEdge)};EditorActionsManager.prototype.realTimeEdgeAddRemoveEventCallBack=function(event){var edge=event.newValue;var edgeID=event.property;if(edge===null){var cyEle=this.cy.$("#"+edgeID);this.removeElementCy(cyEle)}else{this.addNewEdgeLocally(edge)}};EditorActionsManager.prototype.addNewElementsLocally=function(realTimeNodeArray,realTimeEdgeArray){var nodeList=[];var nodeMap={};for(var i in realTimeNodeArray){var realTimeNode=realTimeNodeArray[i];var nodeID=this.realTimeManager.getCustomObjId(realTimeNode);var nodeData={group:"nodes",data:{id:nodeID,type:realTimeNode.type,name:realTimeNode.name,parent:realTimeNode.parent}};if(nodeData.data.parent===undefined){delete nodeData.data.parent}if(realTimeNode.x&&realTimeNode.y){nodeData.position={x:realTimeNode.x,y:realTimeNode.y}}nodeMap[nodeID]=nodeData;nodeList.push(nodeData)}var edgeList=[];for(var i in realTimeEdgeArray){var edge=realTimeEdgeArray[i];var edgeID=this.realTimeManager.getCustomObjId(edge);if(!(edge.source in nodeMap&&edge.target in nodeMap))continue;var edgeData={group:"edges",data:{id:edgeID,type:edge.type,source:edge.source,target:edge.target}};edgeList.push(edgeData)}this.cy.add(nodeList);this.cy.add(edgeList);this.cy.nodes().updateCompoundBounds()};EditorActionsManager.prototype.addNewEdgeLocally=function(edge){var edgeID=this.realTimeManager.getCustomObjId(edge);var edgeData={id:edgeID,type:edge.type,source:edge.source,target:edge.target};this.addNewEdgetoCy(edgeData)};EditorActionsManager.prototype.removeElement=function(ele){if(this.isCollaborative){this.removeElementsFromRealTime(ele)}else{this.removeElementsCy(ele)}};EditorActionsManager.prototype.removeElementCy=function(ele){window.undoRedoManager.do("remove",ele)};EditorActionsManager.prototype.removeElementsCy=function(ele){window.undoRedoManager.do("remove",ele)};EditorActionsManager.prototype.removeElementsFromRealTime=function(eles){var self=this;eles.forEach(function(ele,i){self.realTimeManager.removeElement(ele.id())})};EditorActionsManager.prototype.removeElementFromRealTime=function(ele){this.realTimeManager.removeElement(ele.id())};EditorActionsManager.prototype.changeParents=function(eles,newParentId){if(this.isCollaborative){this.changeParentRealTime(eles,newParentId)}else{var parentData=newParentId?newParentId:null;var param={firstTime:true,parentData:parentData,nodes:eles,posDiffX:0,posDiffY:0};window.undoRedoManager.do("changeParent",param)}};EditorActionsManager.prototype.changeParentCy=function(eles,newParentId){var lockedNodes={};var self=this;function removeNodes(nodes){var removedEles=nodes.connectedEdges().remove();var children=nodes.children();if(children!=null&&children.length>0){children.forEach(function(childNode,i){lockedNodes[childNode.id()]=true});removedEles=removedEles.union(removeNodes(children))}removedEles=removedEles.union(nodes.remove());self.cy.nodes().updateCompoundBounds();return removedEles}var removedEles=removeNodes(eles);window.undoRedoManager.do("remove",removedEles);for(var i=0;i<removedEles.length;i++){var removedNode=removedEles[i];if(removedNode.isEdge()||lockedNodes[removedNode.id()]){continue}removedNode._private.data.parent=newParentId;if(removedNode._private.parent){delete removedNode._private.parent}}self.cy.add(removedEles);window.undoRedoManager.do("add",removedEles);self.cy.nodes().updateCompoundBounds()};EditorActionsManager.prototype.changeParentRealTime=function(eles,newParentId){var classRef=this;function getTopLevelParents(eles){var tpMostNodes=classRef.cy.collection();var parentMap={};eles.forEach(function(node,index){if(node.isParent())parentMap[node.id()]=node});eles.forEach(function(node,index){var nodeParent=node.parent();if(parentMap[nodeParent.id()]===undefined)tpMostNodes=tpMostNodes.union(node)});return tpMostNodes}var NodeObj=function(nodeObj){
-this.nodeRef=nodeObj;this.children=[]};var connectedEdges=eles.connectedEdges();function traverseNodes(eles,rootNodeObj){eles.forEach(function(ele,index){connectedEdges=connectedEdges.union(ele.connectedEdges());if(ele.isParent()){rootNodeObj.children.push(new NodeObj(ele));var lengthOfChildrenArray=rootNodeObj.children.length;traverseNodes(ele.children(),rootNodeObj.children[lengthOfChildrenArray-1])}else{rootNodeObj.children.push(new NodeObj(ele))}})}var topMostNodes=getTopLevelParents(eles);var rootNodeR=new NodeObj(null);traverseNodes(topMostNodes,rootNodeR);this.realTimeManager.changeParent(rootNodeR,newParentId,connectedEdges)};EditorActionsManager.prototype.moveElements=function(ele,position){var classRef=this;if(this.isCollaborative){ele.forEach(function(ele,index){classRef.realTimeManager.moveElement(ele)})}};EditorActionsManager.prototype.handleChangePositionByAlignment=function(movedNodeArr){window.undoRedoManager.do("changePositions",movedNodeArr)};EditorActionsManager.prototype.mergeGraph=function(nodes,edges){if(this.isCollaborative){this.realTimeManager.mergeGraph(nodes,edges)}else{this.mergeGraphCy(nodes,edges)}this.fitGraph()};EditorActionsManager.prototype.mergeGraphCy=function(nodes,edges){var nodesToBeAdded=[];var edgesToBeAdded=[];var nodeMap={};for(var index in nodes){var ele=nodes[index];nodeMap[ele.data.id]=ele;if(cy.filter('node[name = "'+ele.data.name+'"]').length<=0){delete ele.data.id;nodesToBeAdded.push(ele)}}cy.add(nodesToBeAdded);for(var index in edges){var ele=edges[index];var sourceNode=nodeMap[ele.data.source];var targetNode=nodeMap[ele.data.target];var cySourceNode=cy.nodes('[name="'+sourceNode.data.name+'"]');var cyTargetNode=cy.nodes('[name="'+targetNode.data.name+'"]');if(cySourceNode.length>0){ele.data.source=cySourceNode.id()}if(cyTargetNode.length>0){ele.data.target=cyTargetNode.id()}if(cyTargetNode.length<0&&cySourceNode.length<0){continue}var edgesBtw=cy.filter('edge[source = "'+cySourceNode.id()+'"][target = "'+cyTargetNode.id()+'"]');var isFound=false;edgesBtw.forEach(function(edge,i){if(edge.data().type==ele.data.type){isFound=true;return false}});if(!isFound){delete ele.data.id;edgesToBeAdded.push(ele)}}cy.add(edgesToBeAdded)};EditorActionsManager.prototype.fitGraph=function(){if(this.isCollaborative){cy.fit(this.FIT_CONSTANT);var newState={zoomLevel:cy.zoom(),panLevel:cy.pan()};this.updateGlobalOptions(newState)}else{cy.fit(this.FIT_CONSTANT)}};EditorActionsManager.prototype.loadFile=function(nodes,edges){if(this.isCollaborative){this.loadfileRealTime(nodes,edges)}else{this.loadFileCy(nodes,edges)}this.fitGraph()};EditorActionsManager.prototype.loadFileCy=function(nodes,edges){this.removeElementCy(cy.elements());this.addNodesCy(nodes);this.addEdgesCy(edges)};EditorActionsManager.prototype.loadfileRealTime=function(nodes,edges){this.realTimeManager.loadGraph(nodes,edges)};EditorActionsManager.prototype.removeAllElements=function(){if(this.isCollaborative){this.realTimeManager.removeAllElements()}else{cy.remove(cy.elements())}};EditorActionsManager.prototype.changeName=function(ele,newName){if(this.isCollaborative){this.realTimeManager.changeName(ele,newName)}else{this.changeNameCy(ele,newName)}};EditorActionsManager.prototype.changeNameCy=function(ele,newName){var currentName=ele.data("name");var args={node:ele,oldName:currentName,newName:newName};window.undoRedoManager.do("changeName",args)};EditorActionsManager.prototype.updateElementCallback=function(ele,id){var nodeID=id;var cyEle=this.cy.$("#"+nodeID);cyEle.position({x:ele.x,y:ele.y});this.changeNameCy(cyEle,ele.name)};EditorActionsManager.prototype.getGenomicDataSVG=function(node){return this.genomicDataOverlayManager.generateSVGForNode(node)};EditorActionsManager.prototype.removeGenomicData=function(){if(this.isCollaborative){this.realTimeManager.clearGenomicData();this.realTimeManager.clearGenomicVisData()}else{this.genomicDataOverlayManager.removeGenomicData();this.genomicDataOverlayManager.removeGenomicVisData();this.genomicDataOverlayManager.hideGenomicData();this.genomicDataOverlayManager.notifyObservers()}};EditorActionsManager.prototype.addGenomicData=function(genomicData){if(this.isCollaborative){this.removeGenomicData();var parsedGenomicData=this.genomicDataOverlayManager.prepareGenomicDataRealTime(genomicData);var genomicDataMap=parsedGenomicData.genomicDataMap;var visibilityMap=parsedGenomicData.visibilityMap;this.realTimeManager.addGenomicData("genomicData",genomicDataMap);this.realTimeManager.addGenomicVisibilityData("visMap",visibilityMap)}else{this.genomicDataOverlayManager.addGenomicDataLocally(genomicData)}};EditorActionsManager.prototype.addPortalGenomicData=function(genomicData){if(this.isCollaborative){this.genomicDataOverlayManager.addPortalGenomicData(genomicData);this.realTimeManager.addGenomicData("genomicData",this.genomicDataOverlayManager.genomicDataMap);this.realTimeManager.addGenomicVisibilityData("visMap",this.genomicDataOverlayManager.visibleGenomicDataMapByType)}else{this.genomicDataOverlayManager.addPortalGenomicData(genomicData)}};EditorActionsManager.prototype.realTimeGenomicDataHandler=function(event){var newData=event.newValue;var geneSymbol=event.property;if(newData){this.genomicDataOverlayManager.addGenomicData(newData)}else{this.genomicDataOverlayManager.removeGenomicData(geneSymbol)}};EditorActionsManager.prototype.realTimeGenomicDataVsibilityHandler=function(event){var data=event.newValue;if(data){this.genomicDataOverlayManager.addGenomicVisData(data)}else{this.genomicDataOverlayManager.removeGenomicVisData(data)}this.genomicDataOverlayManager.showGenomicData();this.genomicDataOverlayManager.notifyObservers()};return EditorActionsManager}()},{"./GenomicDataOverlayManager.js":185,"./SVGExporter.js":194}],184:[function(require,module,exports){var SaveLoadUtilities=require("./SaveLoadUtility.js");module.exports=function($){"use strict";function b64toBlob(b64Data,contentType,sliceSize){contentType=contentType||"";sliceSize=sliceSize||512;var byteCharacters=atob(b64Data);var byteArrays=[];for(var offset=0;offset<byteCharacters.length;offset+=sliceSize){var slice=byteCharacters.slice(offset,offset+sliceSize);var byteNumbers=new Array(slice.length);for(var i=0;i<slice.length;i++){byteNumbers[i]=slice.charCodeAt(i)}var byteArray=new Uint8Array(byteNumbers);byteArrays.push(byteArray)}var blob=new Blob(byteArrays,{type:contentType});return blob}function saveAsJPEG(){var graphData=cy.jpeg();var b64data=graphData.substr(graphData.indexOf(",")+1);var imageData=b64toBlob(b64data,"image/jpeg");var blob=new Blob([imageData]);saveAs(blob,"pathway.jpg")}function saveAsPNG(){var graphData=cy.png();var b64data=graphData.substr(graphData.indexOf(",")+1);var imageData=b64toBlob(b64data,"image/png");var blob=new Blob([imageData]);saveAs(blob,"pathway.png")}function saveGraph(){var pathwayData=getPathwayData();pathwayData.graphJSON=cy.json();var returnString=SaveLoadUtilities.exportGraph(pathwayData);var blob=new Blob([returnString],{type:"text/plain;charset=utf-8"});saveAs(blob,pathwayData.fileName)}function getPathwayData(){var pathwayData={fileName:$("#pName").val(),pathwayTitle:$("#pTitle").val(),pathwayDescription:$("#pDesc").val()};return pathwayData}function changePathwayDetails(pathwayData){window.appManager.pathwayDetailsView.updatePathwayProperties(pathwayData)}function sampleFileRequestHandler(){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var graphData=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(graphData.nodes,graphData.edges);changePathwayDetails({fileName:graphData.name,pathwayTitle:graphData.title,pathwayDescription:graphData.description});resetUndoStack()}};request.open("GET","/sampleGraph");request.send()}$("#saveGraphBtn").on("click",function(evt){saveGraph()});$("#loadGraphBtn").on("click",function(evt){$("#fileinput").attr("value","");$("#fileinput").trigger("click")});$("#fileinput").on("change",function(){var file=this.files[0];var formData=new FormData;formData.append("graphFile",file);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var graphData=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(graphData.nodes,graphData.edges);changePathwayDetails({fileName:file.name,pathwayTitle:graphData.title,pathwayDescription:graphData.description});resetUndoStack()}};request.open("POST","/loadGraph");request.send(formData);$("#fileinput").val(null)});$("#mergeInput").on("change",function(){var file=this.files[0];var formData=new FormData;formData.append("graphFile",file);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var graphData=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.mergeGraph(graphData.nodes,graphData.edges);resetUndoStack()}};request.open("POST","/loadGraph");request.send(formData);$("#mergeInput").val(null)});$("#pathwayDetailsBtn").on("click",function(evt){window.appManager.pathwayDetailsView.render();$("#pathwayDetailsDiv").modal("show")});$(".fileDropDown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="save"){saveGraph()}else if(dropdownLinkRole=="load"){$("#fileinput").trigger("click")}else if(dropdownLinkRole=="details"){$("#pathwayDetailsBtn").trigger("click")}else if(dropdownLinkRole=="sample"){sampleFileRequestHandler()}else if(dropdownLinkRole=="new"){window.editorActionsManager.removeAllElements();resetUndoStack()}else if(dropdownLinkRole=="merge"){$("#mergeInput").trigger("click")}else if(dropdownLinkRole=="jpeg"){saveAsJPEG()}else if(dropdownLinkRole=="png"){saveAsPNG()}else if(dropdownLinkRole=="svg"){var returnString=window.editorActionsManager.exportSVG();var fileName="pathway.svg";var blob=new Blob([returnString],{type:"text/plain;charset=utf-8"});saveAs(blob,fileName)}});$("#fileinput").on("change",function(){var file=this.files[0];var formData=new FormData;formData.append("graphFile",file);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var graphData=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(graphData.nodes,graphData.edges);changePathwayDetails({fileName:file.name,pathwayTitle:graphData.title,pathwayDescription:graphData.description})}};request.open("POST","/loadGraph");request.send(formData);$("#fileinput").val(null)});function resetUndoStack(){window.undoRedoManager.reset()}}(window.$)},{"./SaveLoadUtility.js":195}],185:[function(require,module,exports){module.exports=function(){var GenomicDataOverlayManager=function(){this.cancerTypes=[];this.genomicDataMap={};this.visibleGenomicDataMapByType={};this.DEFAULT_VISIBLE_GENOMIC_DATA_COUNT=3;this.observers=[]};GenomicDataOverlayManager.prototype.addGenomicDataLocally=function(genomicData){this.parseGenomicData(genomicData);this.showGenomicData();this.notifyObservers()};GenomicDataOverlayManager.prototype.addPortalGenomicData=function(genomicData){this.genomicDataMap=this.genomicDataMap?this.genomicDataMap:{};this.cancerTypes=this.cancerTypes?this.cancerTypes:[];this.visibleGenomicDataMapByType=this.visibleGenomicDataMapByType?this.visibleGenomicDataMapByType:{};for(var cancerProfile in genomicData){if(cancerProfile in this.cancerTypes)continue;this.cancerTypes.push(cancerProfile);this.visibleGenomicDataMapByType[cancerProfile]=true;for(var geneSymbol in genomicData[cancerProfile]){if(!this.genomicDataMap[geneSymbol])this.genomicDataMap[geneSymbol]={};this.genomicDataMap[geneSymbol][cancerProfile]=String(genomicData[cancerProfile][geneSymbol].toFixed(2))}}this.showGenomicData();this.notifyObservers()};GenomicDataOverlayManager.prototype.removeGenomicData=function(){this.genomicDataMap={}};GenomicDataOverlayManager.prototype.addGenomicData=function(data){this.genomicDataMap=data};GenomicDataOverlayManager.prototype.removeGenomicVisData=function(){this.visibleGenomicDataMapByType={}};GenomicDataOverlayManager.prototype.addGenomicVisData=function(data){this.visibleGenomicDataMapByType=data};GenomicDataOverlayManager.prototype.prepareGenomicDataRealTime=function(genomicData){var genomicDataMap={};var cancerTypes=[];var visibleGenomicDataMapByType={};var lines=genomicData.split("\n");var metaLineColumns=lines[0].split("	");for(var i=1;i<metaLineColumns.length;i++){cancerTypes.push(metaLineColumns[i]);if(i-1<this.DEFAULT_VISIBLE_GENOMIC_DATA_COUNT)visibleGenomicDataMapByType[cancerTypes[i-1]]=true;else visibleGenomicDataMapByType[cancerTypes[i-1]]=false}for(var i=1;i<lines.length;i++){if(lines[i].length==0)break;var lineContent=lines[i].split("	");var geneSymbol=lineContent[0];if(!(geneSymbol in genomicDataMap))genomicDataMap[geneSymbol]={};for(var j=1;j<lineContent.length;j++){genomicDataMap[geneSymbol][cancerTypes[j-1]]=lineContent[j]}}var returnObj={genomicDataMap:genomicDataMap,visibilityMap:visibleGenomicDataMapByType};return returnObj};GenomicDataOverlayManager.prototype.updateGenomicDataVisibility=function(_key,isVisible){if(_key in this.visibleGenomicDataMapByType)this.visibleGenomicDataMapByType[_key]=isVisible};GenomicDataOverlayManager.prototype.hideGenomicData=function(){cy.style().selector('node[type="GENE"]').style("text-margin-y",0).style("width",function(ele){return 150}).style("background-image",function(ele){var dataURI="data:image/svg+xml,";return dataURI}).update()};GenomicDataOverlayManager.prototype.countVisibleGenomicDataByType=function(){var genomicDataBoxCount=0;for(var cancerType in this.visibleGenomicDataMapByType){if(this.visibleGenomicDataMapByType[cancerType])genomicDataBoxCount++}return genomicDataBoxCount};GenomicDataOverlayManager.prototype.generateSVGForNode=function(ele){var genomicDataBoxCount=this.countVisibleGenomicDataByType();var dataURI="data:image/svg+xml,";var svgNameSpace="http://www.w3.org/2000/svg";var nodeLabel=ele.data("name");if(!(nodeLabel in this.genomicDataMap))return dataURI;var eleBBox=ele.boundingBox();var reqWidth=getRequiredWidthForGenomicData(genomicDataBoxCount);console.log(" reqW"+reqWidth);var overlayRecBoxW=reqWidth-10;var overlayRecBoxH=25;var svg=document.createElementNS(svgNameSpace,"svg");svg.setAttribute("width",reqWidth);svg.setAttribute("height",eleBBox.h);svg.setAttribute("xmlns",svgNameSpace);var overLayRectBBox={w:overlayRecBoxW,h:overlayRecBoxH,x:reqWidth/2-overlayRecBoxW/2,y:eleBBox.h/2+overlayRecBoxH/2-18};var genomicFrequencyData=this.genomicDataMap[nodeLabel];var maxGenomicDataBoxCount=genomicDataBoxCount;var genomicBoxCounter=0;for(var cancerType in genomicFrequencyData){if(!this.visibleGenomicDataMapByType[cancerType])continue;genomicDataRectangleGenerator(overLayRectBBox.x+genomicBoxCounter*overLayRectBBox.w/maxGenomicDataBoxCount,overLayRectBBox.y,overLayRectBBox.w/maxGenomicDataBoxCount,overLayRectBBox.h,genomicFrequencyData[cancerType],svg);genomicBoxCounter++}function genomicDataRectangleGenerator(x,y,w,h,percent,parentSVG){var isNegativePercent=percent<0;var _percent=Math.abs(percent);_percent=_percent<.5?2:Math.round(_percent);_percent=_percent==1?2:_percent;var percentColor=255-(-7.118+53.9765*Math.log(_percent));var colorString="";if(percent==0){colorString="rgb(255,255,255)"}else if(isNegativePercent){colorString="rgb("+Math.round(percentColor)+","+Math.round(percentColor)+",255)";percent=percent.substring(1)}else colorString="rgb(255,"+Math.round(percentColor)+","+Math.round(percentColor)+")";var overlayRect=document.createElementNS(svgNameSpace,"rect");overlayRect.setAttribute("x",x);overlayRect.setAttribute("y",y);overlayRect.setAttribute("width",w);overlayRect.setAttribute("height",h);overlayRect.setAttribute("style","stroke-width:1;stroke:rgb(0,0,0);opacity:1;fill:"+colorString+";");var textPercent=percent<.5&&percent>0?"<0.5":Math.round(percent);var text=textPercent+"%";var fontSize=14;var textLength=text.length;var xOffset=w/2-textLength*4;var yOffset=fontSize/3;var svgText=document.createElementNS(svgNameSpace,"text");svgText.setAttribute("x",x+xOffset);svgText.setAttribute("y",y+h/2+yOffset);svgText.setAttribute("font-family","Arial");svgText.setAttribute("font-size",fontSize);svgText.innerHTML=text;parentSVG.appendChild(overlayRect);parentSVG.appendChild(svgText)}return svg};function getRequiredWidthForGenomicData(genomicDataBoxCount){var term=genomicDataBoxCount>3?genomicDataBoxCount-3:0;return 150+term*35}GenomicDataOverlayManager.prototype.showGenomicData=function(){var self=this;var genomicDataBoxCount=this.countVisibleGenomicDataByType();if(genomicDataBoxCount<1){this.hideGenomicData();return}cy.style().selector('node[type="GENE"]').style("width",function(ele){return getRequiredWidthForGenomicData(genomicDataBoxCount)}).style("text-margin-y",function(ele){var nodeLabel=ele.data("name");if(!(nodeLabel in self.genomicDataMap))return 0;return-15}).style("background-image",function(ele){var dataURI="data:image/svg+xml,";return dataURI+self.generateSVGForNode(ele).outerHTML}).update()};GenomicDataOverlayManager.prototype.parseGenomicData=function(genomicData){this.genomicDataMap={};this.cancerTypes=[];this.visibleGenomicDataMapByType={};var lines=genomicData.split("\n");var metaLineColumns=lines[0].split("	");for(var i=1;i<metaLineColumns.length;i++){this.cancerTypes.push(metaLineColumns[i]);if(i-1<this.DEFAULT_VISIBLE_GENOMIC_DATA_COUNT)this.visibleGenomicDataMapByType[this.cancerTypes[i-1]]=true;else this.visibleGenomicDataMapByType[this.cancerTypes[i-1]]=false}for(var i=1;i<lines.length;i++){if(lines[i].length==0)break;var lineContent=lines[i].split("	");var geneSymbol=lineContent[0];if(!(geneSymbol in this.genomicDataMap))this.genomicDataMap[geneSymbol]={};for(var j=1;j<lineContent.length;j++){this.genomicDataMap[geneSymbol][this.cancerTypes[j-1]]=lineContent[j]}}};GenomicDataOverlayManager.prototype.registerObserver=function(observer){this.observers.push(observer)};GenomicDataOverlayManager.prototype.notifyObservers=function(){for(var i in this.observers){var observer=this.observers[i];observer.notify()}};return GenomicDataOverlayManager}()},{}],186:[function(require,module,exports){module.exports=function($){$("#genomicDataInput").on("change",function(){var file=this.files[0];var formData=new FormData;formData.append("graphFile",file);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){window.editorActionsManager.addGenomicData(request.responseText)}};request.open("POST","/loadGraph");request.send(formData);$("#genomicDataInput").val(null)});$(".dataDropdown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="loadGenomic"){$("#genomicDataInput").trigger("click")}else if(dropdownLinkRole=="loadPortal"){window.appManager.portalAccessView.render()}else if(dropdownLinkRole=="dataViewSettings"){$("#genomicDataExplorerDiv").modal("show")}else if(dropdownLinkRole=="loadSampleGenomicData"){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){window.editorActionsManager.addGenomicData(request.responseText)}};request.open("GET","/sampleGenomicData");request.send()}else if(dropdownLinkRole=="removeGenomicData"){window.editorActionsManager.removeGenomicData()}})}(window.$)},{}],187:[function(require,module,exports){module.exports=function(){var styleSheet=[{selector:"node",style:{label:"data(name)","text-valign":"center","text-halign":"center",color:"#1e2829",width:150,height:52,"background-color":"#fff","background-opacity":.5,shape:function(ele){return parentNodeShapeFunc(ele)},"border-width":function(ele){return borderWidthFunction(ele)},"border-color":function(ele){return nodeBorderColorFunction(ele)},"font-size":14}},{selector:"node:parent",style:{shape:function(ele){return parentNodeShapeFunc(ele)},"text-valign":function(ele){return"bottom"},"text-margin-y":2,"padding-left":function(ele){return compoundPaddingFunction(ele)},"padding-right":function(ele){return compoundPaddingFunction(ele)},"padding-bottom":function(ele){return compoundPaddingFunction(ele)},"padding-top":function(ele){return compoundPaddingFunction(ele)},"background-opacity":.5,"border-width":function(ele){return parentBorderWidthFunction(ele)},"border-color":function(ele){return nodeBorderColorFunction(ele)},"background-color":function(ele){return nodeBackgroundColorFunction(ele)}}},{selector:"edge",style:{"curve-style":"bezier","target-arrow-shape":function(ele){return edgeTargetArrowTypeHandler(ele)},width:1,"line-color":function(ele){return edgeColorHandler(ele)},"target-arrow-color":function(ele){return edgeColorHandler(ele)},"line-style":function(ele){return edgeLineTypeHandler(ele)},opacity:1}},{selector:":selected",style:{"shadow-color":"#f1c40f","shadow-opacity":1}},{selector:".edgehandles-hover",css:{"background-color":"#1abc9c"}},{selector:".edgehandles-source",css:{"border-width":2,"border-color":"#1abc9c"}},{selector:".edgehandles-target",css:{"border-width":2,"border-color":"#1abc9c"}},{selector:".edgehandles-preview, .edgehandles-ghost-edge",css:{"line-color":"#1abc9c","target-arrow-color":"#1abc9c","source-arrow-color":"#1abc9c"}}];var compoundPaddingFunction=function(ele){switch(ele._private.data["type"]){case"FAMILY":return 5;break;case"COMPLEX":return"5";break;case"COMPARTMENT":return 10;break;case"PROCESS":return 10;break;default:return 5;break}};var contentFunction=function(ele){if(ele._private.data.name){return ele._private.data.name}return"newNode"};var vTextPositionFunction=function(ele){switch(ele._private.data["type"]){case"GENE":return"center";break;case"FAMILY":return"top";break;case"COMPLEX":return"top";break;case"COMPARTMENT":return"top";break;default:return"center";break}};var borderWidthFunction=function(ele){switch(ele._private.data["type"]){case"GENE":return.5;break;case"PROCESS":return 0;break;case"FAMILY":return 1;break;case"COMPARTMENT":return 2;break;default:return.5;break}};var parentBorderWidthFunction=function(ele){switch(ele._private.data["type"]){case"GENE":return.5;break;case"PROCESS":return 0;break;case"FAMILY":return 1;break;case"COMPLEX":return.5;break;case"COMPARTMENT":return 2;break;default:return.5;break}};var parentNodeShapeFunc=function(ele){switch(ele._private.data["type"]){case"GENE":return"roundrectangle";break;case"PROCESS":return"roundrectangle";break;case"FAMILY":return"rectangle";break;case"COMPARTMENT":return"roundrectangle";break;case"COMPLEX":return"rectangle";break;default:return"roundrectangle";break}};var nodeBackgroundColorFunction=function(ele){return"#fff"};var nodeBorderColorFunction=function(ele){switch(ele._private.data["type"]){case"GENE":return"#000000";break;case"FAMILY":return"#CCCCCC";break;case"COMPLEX":return"#000000";break;case"COMPARTMENT":return"#000000";break;default:return"#000000";break}};var edgeColorHandler=function(ele){return"#1b1b1b"};var edgeTargetArrowTypeHandler=function(ele){switch(ele._private.data["type"]){case"ACTIVATES":return"triangle";break;case"INHIBITS":return"tee";break;case"INDUCES":return"triangle";break;case"REPRESSES":return"tee";break;case"BINDS":return"none";break;default:return"none";break}};var edgeLineTypeHandler=function(ele){switch(ele._private.data["type"]){case"ACTIVATES":return"solid";break;case"INHIBITS":return"solid";break;case"INDUCES":return"dashed";break;case"REPRESSES":return"dashed";break;case"BINDS":return"solid";break;default:return"solid";break}};return styleSheet}()},{}],188:[function(require,module,exports){module.exports=function(){var GraphUtilities=function(){};GraphUtilities.prototype.createGraphHierarchy=function(nodes){var tree=[];var mappedArr={};for(var i=0,len=nodes.length;i<len;i++){var arrElem=nodes[i];mappedArr[arrElem.id()]=arrElem;mappedArr[arrElem.id()].childNodes=[]}for(var id in mappedArr){var mappedElem=mappedArr[id];if(mappedElem.parent().length>0){mappedArr[mappedElem.parent().id()].childNodes.push(mappedElem)}else{tree.push(mappedElem)}}return tree};GraphUtilities.prototype.createGraphHierarchyRealTime=function(nodes){var tree=[];var mappedArr={};for(var i=0,len=nodes.length;i<len;i++){var arrElem=nodes[i];mappedArr[arrElem.data.id]=arrElem;mappedArr[arrElem.data.id].children=[]}for(var id in mappedArr){var mappedElem=mappedArr[id];if(mappedElem.data.parent){mappedArr[mappedElem.data.parent].children.push(mappedElem)}else{tree.push(mappedElem)}}return tree};window.GraphUtilities=new GraphUtilities}()},{}],189:[function(require,module,exports){module.exports=function(){"use strict";$(".edge-palette a").click(function(event){event.preventDefault();if($(event.target).hasClass("active")){cy.edgehandles("disable");cy.edgehandles("drawoff");$(".edge-palette a").blur().removeClass("active")}else{$(".edge-palette a").blur().removeClass("active");$(event.target).toggleClass("active");window.edgeAddingMode=$(event.target).attr("edgeTypeIndex");cy.edgehandles("enable")}});$(".editDropDown li a").click(function(event){$.notify({icon:"glyphicon glyphicon-ok",message:"Data is loaded ..."},{element:"body",position:null,type:"pastel-warning",allow_dismiss:true,newest_on_top:false,showProgressbar:false,placement:{from:"bottom",align:"right"},delay:0,offset:20,spacing:10,z_index:1031,mouse_over:null,animate:{enter:"animated fadeInUp",exit:"animated fadeOut"}});event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="addGene"){var clickedNodeType=$(event.target).text();var nodeData={type:clickedNodeType.toUpperCase(),name:"New "+clickedNodeType};var posData={x:cy.width()/2,y:cy.height()/2};window.editorActionsManager.addNode(nodeData,posData)}else if(dropdownLinkRole=="addEdge"){var edgeTypeIndex=$(event.target).attr("edgeTypeIndex");$(".edge-palette a").blur().removeClass("active");$('.edge-palette a[edgeTypeIndex="'+edgeTypeIndex+'"]').addClass("active");window.edgeAddingMode=edgeTypeIndex;cy.edgehandles("enable")}else if(dropdownLinkRole=="deleteSelected"){var selectedEles=cy.elements(":selected");window.editorActionsManager.removeElement(selectedEles)}else if(dropdownLinkRole=="undo"){window.undoRedoManager.undo()}else if(dropdownLinkRole=="redo"){window.undoRedoManager.redo()}});$(".layoutDropDown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="perform_layout"){window.editorActionsManager.performLayout()}else if(dropdownLinkRole=="layout_properties"){$("#layoutPropertiesDiv").modal("show")}});$(".aboutDropDown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="about"){$("#aboutModal").modal("show")}else if(dropdownLinkRole=="edge_legend"){$("#edge_legend_modal").modal("show")}else if(dropdownLinkRole=="node_legend"){$("#node_legend_modal").modal("show")}else if(dropdownLinkRole=="help"){$("#quickHelpModal").modal("show")}})}()},{}],190:[function(require,module,exports){var panzoomOptions={zoomFactor:.05,zoomDelay:45,minZoom:.1,maxZoom:10,fitPadding:50,panSpeed:10,panDistance:10,panDragAreaSize:75,panMinPercentSpeed:.25,panInactiveArea:8,panIndicatorMinOpacity:.5,zoomOnly:false,sliderHandleIcon:"fa fa-minus",zoomInIcon:"fa fa-plus",zoomOutIcon:"fa fa-minus",resetIcon:"fa fa-expand"};module.exports=panzoomOptions},{}],191:[function(require,module,exports){var BackboneView=require("./BackboneViews/BioGeneView.js");module.exports=function($){"use strict";var QtipManager=function(cy){this.cy=cy};QtipManager.prototype.generateQtipContentHTML=function(ele){var self=this;var nodeData=ele.data();var textInput=$('<div class="col-xs-8 inputCol"><input type="text" class="form-control" nodeid="'+ele.id()+'" value="'+nodeData.name+'"></div>');textInput.change(function(){var nodeID=$(this).find("input").attr("nodeid");var cyNode=self.cy.$("#"+nodeID)[0];var newName=$(this).find("input").val();window.editorActionsManager.changeName(cyNode,newName)});var wrapper=$("<div></div>");var row=$('<div class="row">                 <div class="col-xs-4 qtipLabel">Name:</div>              </div>');row.append(textInput);wrapper.append(row);if(ele.data().type==="GENE"){var entrezGeneButton=$('<div class="row centerText geneDetails"><button nodeid="'+ele.id()+'" type="button" class="btn btn-default">Entrez Gene</button></div>');entrezGeneButton.find("button").on("click",function(event){event.preventDefault();var nodeID=$(this).attr("nodeid");var nodeSymbol=self.cy.$("#"+nodeID)[0]._private.data["name"];var parent=$(this).parent();parent.empty().append('<i class="fa fa-circle-o-notch fa-spin fa-3x fa-fw"></i>');var formData=new FormData;formData.append("query",nodeSymbol);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE){if(request.status===200){var jsonData=JSON.parse(request.responseText);if(jsonData.count>0){var backboneView=new BackboneView({model:jsonData.geneInfo[0]}).render().html();parent.empty().append(backboneView)}else{parent.empty().append("There is no extra information for this gene")}}else{parent.empty().append("An error occured while retrieving the data")}}};request.open("POST","/getBioGeneData");request.send(formData)});wrapper.append(entrezGeneButton)}return wrapper};QtipManager.prototype.addQtipToElements=function(eles){var self=this;eles.forEach(function(node,i){var qTipOpts={content:{text:function(){return self.generateQtipContentHTML(this)},title:function(){return capitalizeFirstLetter(node.data().type.toLowerCase())+" Details"}},position:{my:"top center",at:"bottom center"},style:{classes:"qtip-tipsy qtip-rounded",width:400}};node.qtip(qTipOpts)})};function capitalizeFirstLetter(string){return string.charAt(0).toUpperCase()+string.slice(1)}return QtipManager}(window.$)},{"./BackboneViews/BioGeneView.js":173}],192:[function(require,module,exports){module.exports=function(){"use strict";var RealTimeManager=function(postFileLoadCallback){this.clientId="122039910543-b7u74aijsqne9iv5rk2tgm3529ped4d0.apps.googleusercontent.com";this.NODEMAP_NAME="nodes";this.EDGEMAP_NAME="edges";this.LAYOUT_PROPS_NAME="layoutProperties";this.GLOBAL_OPTS_NAME="globalOptions";this.GENOMIC_DATA_MAP_NAME="genomicDataMap";this.VISIBLE_GENOMIC_DATA_MAP_NAME="visibleGenomicDataMapByType";this.realtimeUtils=new utils.RealtimeUtils({clientId:this.clientId});this.postFileLoad=postFileLoadCallback};RealTimeManager.prototype.authorize=function(callbackFunction,isModal){this.realtimeUtils.authorize(function(response){callbackFunction(response)},isModal)};RealTimeManager.prototype.initRealTimeAPI=function(){var id=this.realtimeUtils.getParam("id");this.registerTypes();var self=this;var initFileCallback=function(model){self.onFileInitialize(model)};var loadFileCallback=function(model){self.onFileLoaded(model)};if(id){this.realtimeUtils.load(id.replace("/",""),loadFileCallback,initFileCallback)}else{this.realtimeUtils.createAppFile("New Graph",function(createResponse){var result=createResponse.result;window.history.pushState(null,null,"?id="+result.id);self.realtimeUtils.load(result.id,loadFileCallback,initFileCallback)})}};RealTimeManager.prototype.onFileInitialize=function(model){var root=model.getRoot();var nodeMap=model.createMap();var edgeMap=model.createMap();var layoutProperties=model.create(LayoutPropertiesR,window.editorActionsManager.layoutProperties);var globalOptions=model.create(GlobalOptionsR,window.editorActionsManager.getGlobalOptions());var genomicDataMap=model.createMap();var genomicDataVisibilityMap=model.createMap();root.set(this.NODEMAP_NAME,nodeMap);root.set(this.EDGEMAP_NAME,edgeMap);root.set(this.LAYOUT_PROPS_NAME,layoutProperties);root.set(this.GLOBAL_OPTS_NAME,globalOptions);root.set(this.GENOMIC_DATA_MAP_NAME,genomicDataMap);root.set(this.VISIBLE_GENOMIC_DATA_MAP_NAME,genomicDataVisibilityMap);
+var targetNode=_CoSELayout.idToLNode[edge.data("target")];var e1=gm.add(_CoSELayout.layout.newEdge(),sourceNode,targetNode);e1.id=edge.id()}var t1=layout.thread;if(!t1||t1.stopped()){t1=layout.thread=Thread();t1.require(DimensionD,"DimensionD");t1.require(HashMap,"HashMap");t1.require(HashSet,"HashSet");t1.require(IGeometry,"IGeometry");t1.require(IMath,"IMath");t1.require(Integer,"Integer");t1.require(Point,"Point");t1.require(PointD,"PointD");t1.require(RandomSeed,"RandomSeed");t1.require(RectangleD,"RectangleD");t1.require(Transform,"Transform");t1.require(UniqueIDGeneretor,"UniqueIDGeneretor");t1.require(LGraphObject,"LGraphObject");t1.require(LGraph,"LGraph");t1.require(LEdge,"LEdge");t1.require(LGraphManager,"LGraphManager");t1.require(LNode,"LNode");t1.require(Layout,"Layout");t1.require(LayoutConstants,"LayoutConstants");t1.require(FDLayout,"FDLayout");t1.require(FDLayoutConstants,"FDLayoutConstants");t1.require(FDLayoutEdge,"FDLayoutEdge");t1.require(FDLayoutNode,"FDLayoutNode");t1.require(CoSEConstants,"CoSEConstants");t1.require(CoSEEdge,"CoSEEdge");t1.require(CoSEGraph,"CoSEGraph");t1.require(CoSEGraphManager,"CoSEGraphManager");t1.require(CoSELayout,"CoSELayout");t1.require(CoSENode,"CoSENode")}var nodes=this.options.eles.nodes();var edges=this.options.eles.edges();var pData={nodes:[],edges:[]};var nodeIdMap={};for(var i=0;i<nodes.length;i++){nodeIdMap[nodes[i].id()]=true}var lnodes=gm.getAllNodes();for(var i=0;i<lnodes.length;i++){var lnode=lnodes[i];var nodeId=lnode.id;var cyNode=this.options.cy.getElementById(nodeId);var parentId=cyNode.data("parent");parentId=nodeIdMap[parentId]?parentId:undefined;var w=lnode.rect.width;var posX=lnode.rect.x;var posY=lnode.rect.y;var h=lnode.rect.height;var dummy_parent_id=null;if(cyNode.scratch("coseBilkent")&&cyNode.scratch("coseBilkent").dummy_parent_id)dummy_parent_id=cyNode.scratch("coseBilkent").dummy_parent_id;pData["nodes"].push({id:nodeId,pid:parentId,x:posX,y:posY,width:w,height:h,dummy_parent_id:dummy_parent_id})}var ledges=gm.getAllEdges();for(var i=0;i<ledges.length;i++){var ledge=ledges[i];var edgeId=ledge.id;var cyEdge=this.options.cy.getElementById(edgeId);var srcNodeId=cyEdge.source().id();var tgtNodeId=cyEdge.target().id();pData["edges"].push({id:edgeId,source:srcNodeId,target:tgtNodeId})}var ready=false;t1.pass(pData).run(function(pData){var log=function(msg){broadcast({log:msg})};log("start thread");var layout_t=new CoSELayout;var gm_t=layout_t.newGraphManager();var ngraph=gm_t.layout.newGraph();var nnode=gm_t.layout.newNode(null);var root=gm_t.add(ngraph,nnode);root.graphManager=gm_t;gm_t.setRootGraph(root);var root_t=gm_t.rootGraph;var orphans_t=[];var idToLNode_t={};var childrenMap={};var result={};var processNodes=function(parent,children){var size=children.length;for(var i=0;i<size;i++){var theChild=children[i];var children_of_children=childrenMap[theChild.id];var theNode;if(theChild.width!=null&&theChild.height!=null){theNode=parent.add(new CoSENode(gm_t,new PointD(theChild.x,theChild.y),new DimensionD(parseFloat(theChild.width),parseFloat(theChild.height))))}else{theNode=parent.add(new CoSENode(gm_t))}theNode.id=theChild.id;idToLNode_t[theChild.id]=theNode;if(isNaN(theNode.rect.x)){theNode.rect.x=0}if(isNaN(theNode.rect.y)){theNode.rect.y=0}if(children_of_children!=null&&children_of_children.length>0){var theNewGraph;theNewGraph=layout_t.getGraphManager().add(layout_t.newGraph(),theNode);theNewGraph.graphManager=gm_t;processNodes(theNewGraph,children_of_children)}}};var nodes=pData.nodes;for(var i=0;i<nodes.length;i++){var theNode=nodes[i];var p_id=theNode.pid;if(p_id!=null){if(childrenMap[p_id]==null){childrenMap[p_id]=[]}childrenMap[p_id].push(theNode)}else{orphans_t.push(theNode)}}processNodes(root_t,orphans_t);var edges=pData.edges;for(var i=0;i<edges.length;i++){var edge=edges[i];var sourceNode=idToLNode_t[edge.source];var targetNode=idToLNode_t[edge.target];var e1=gm_t.add(layout_t.newEdge(),sourceNode,targetNode)}var graphs=gm_t.getGraphs();var size=graphs.length;var i;var dummyNodes=[];var dummyEdges=[];var graph;for(i=0;i<size;i++){graph=graphs[i];if(graph.getEdges().length>0){continue}graph.updateBounds(true);var centerX=(graph.getLeft()+graph.getRight())/2;var centerY=(graph.getTop()+graph.getBottom())/2;var children=graph.getNodes();var dummyNode=new CoSENode(gm_t,new PointD(centerX,centerY),new DimensionD(1,1));dummyNode.id=i+"_dummy";dummyNodes.push(dummyNode);graph.add(dummyNode);for(var k=0;k<children.length;k++){if(children[k].id==dummyNode.id)continue;var newEdge=layout_t.newEdge();newEdge.id=children[k].id+"_"+dummyNode.id;dummyEdges.push({dummyEdge:newEdge,parentGraph:graph});graph.add(newEdge,children[k],dummyNode)}}layout_t.runLayout();for(var id in idToLNode_t){var lNode=idToLNode_t[id];var rect=lNode.rect;result[id]={id:id,x:rect.x,y:rect.y,w:rect.width,h:rect.height}}for(var i=0;i<dummyNodes.length;i++){var nodeInst=dummyNodes[i];nodeInst.getOwner().remove(nodeInst)}for(var i=0;i<dummyEdges.length;i++){var edgeInst=dummyEdges[i];edgeInst.parentGraph.remove(edgeInst.dummyEdge)}var seeds={};seeds.rsSeed=RandomSeed.seed;seeds.rsX=RandomSeed.x;var pass={result:result,seeds:seeds};return pass}).then(function(pass){var result=pass.result;var seeds=pass.seeds;RandomSeed.seed=seeds.rsSeed;RandomSeed.x=seeds.rsX;for(var id in result){var lNode=_CoSELayout.idToLNode[id];var node=result[id];lNode.rect.x=node.x;lNode.rect.y=node.y;lNode.rect.width=node.w;lNode.rect.height=node.h}if(after.options.tile){after.repopulateZeroDegreeMembers(tiledZeroDegreeNodes);after.repopulateCompounds(tiledMemberPack);after.options.eles.nodes().updateCompoundBounds()}var getPositions=function(i,ele){var theId=ele.data("id");var lNode=_CoSELayout.idToLNode[theId];return{x:lNode.getRect().getCenterX(),y:lNode.getRect().getCenterY()}};if(after.options.animate!=="during"){after.options.eles.nodes().layoutPositions(after,after.options,getPositions)}else{after.options.eles.nodes().positions(getPositions);if(after.options.fit)after.options.cy.fit(after.options.eles.nodes(),after.options.padding);if(!ready){after.cy.one("layoutready",after.options.ready);after.cy.trigger("layoutready")}after.cy.one("layoutstop",after.options.stop);after.cy.trigger("layoutstop")}t1.stop();after.options.eles.nodes().removeScratch("coseBilkent")});t1.on("message",function(e){var logMsg=e.message.log;if(logMsg!=null){console.log("Thread log: "+logMsg);return}var pData=e.message.pData;if(pData!=null){after.options.eles.nodes().positions(function(i,ele){if(ele.scratch("coseBilkent")&&ele.scratch("coseBilkent").dummy_parent_id){var dummyParent=ele.scratch("coseBilkent").dummy_parent_id;return{x:dummyParent.x,y:dummyParent.y}}var theId=ele.data("id");var pNode=pData[theId];var temp=this;while(pNode==null){temp=temp.parent()[0];pNode=pData[temp.id()];pData[theId]=pNode}return{x:pNode.x,y:pNode.y}});if(after.options.fit)after.options.cy.fit(after.options.eles.nodes(),after.options.padding);if(!ready){ready=true;after.one("layoutready",after.options.ready);after.trigger({type:"layoutready",layout:after})}return}});return this};_CoSELayout.getTopMostNodes=function(nodes){var nodesMap={};for(var i=0;i<nodes.length;i++){nodesMap[nodes[i].id()]=true}var roots=nodes.filter(function(i,ele){var parent=ele.parent()[0];while(parent!=null){if(nodesMap[parent.id()]){return false}parent=parent.parent()[0]}return true});return roots};_CoSELayout.prototype.getToBeTiled=function(node){var id=node.data("id");if(_CoSELayout.toBeTiled[id]!=null){return _CoSELayout.toBeTiled[id]}var children=node.children();if(children==null||children.length==0){_CoSELayout.toBeTiled[id]=false;return false}for(var i=0;i<children.length;i++){var theChild=children[i];if(this.getNodeDegree(theChild)>0){_CoSELayout.toBeTiled[id]=false;return false}if(theChild.children()==null||theChild.children().length==0){_CoSELayout.toBeTiled[theChild.data("id")]=false;continue}if(!this.getToBeTiled(theChild)){_CoSELayout.toBeTiled[id]=false;return false}}_CoSELayout.toBeTiled[id]=true;return true};_CoSELayout.prototype.getNodeDegree=function(node){var id=node.id();var edges=this.options.eles.edges().filter(function(i,ele){var source=ele.data("source");var target=ele.data("target");if(source!=target&&(source==id||target==id)){return true}});return edges.length};_CoSELayout.prototype.getNodeDegreeWithChildren=function(node){var degree=this.getNodeDegree(node);var children=node.children();for(var i=0;i<children.length;i++){var child=children[i];degree+=this.getNodeDegreeWithChildren(child)}return degree};_CoSELayout.prototype.groupZeroDegreeMembers=function(){var tempMemberGroups=[];var memberGroups=[];var self=this;var parentMap={};for(var i=0;i<this.options.eles.nodes().length;i++){parentMap[this.options.eles.nodes()[i].id()]=true}var zeroDegree=this.options.eles.nodes().filter(function(i,ele){var pid=ele.data("parent");if(pid!=undefined&&!parentMap[pid]){pid=undefined}if(self.getNodeDegreeWithChildren(ele)==0&&(pid==undefined||pid!=undefined&&!self.getToBeTiled(ele.parent()[0])))return true;else return false});for(var i=0;i<zeroDegree.length;i++){var node=zeroDegree[i];var p_id=node.parent().id();if(p_id!=undefined&&!parentMap[p_id]){p_id=undefined}if(typeof tempMemberGroups[p_id]==="undefined")tempMemberGroups[p_id]=[];tempMemberGroups[p_id]=tempMemberGroups[p_id].concat(node)}for(var p_id in tempMemberGroups){if(tempMemberGroups[p_id].length>1){var dummyCompoundId="DummyCompound_"+p_id;memberGroups[dummyCompoundId]=tempMemberGroups[p_id];if(this.options.cy.getElementById(dummyCompoundId).empty()){this.options.cy.add({group:"nodes",data:{id:dummyCompoundId,parent:p_id}});var dummy=this.options.cy.nodes()[this.options.cy.nodes().length-1];this.options.eles=this.options.eles.union(dummy);dummy.hide();for(var i=0;i<tempMemberGroups[p_id].length;i++){if(i==0){dummy.scratch("coseBilkent",{tempchildren:[]})}var node=tempMemberGroups[p_id][i];var scratchObj=node.scratch("coseBilkent");if(!scratchObj){scratchObj={};node.scratch("coseBilkent",scratchObj)}scratchObj["dummy_parent_id"]=dummyCompoundId;this.options.cy.add({group:"nodes",data:{parent:dummyCompoundId,width:node.width(),height:node.height()}});var tempchild=this.options.cy.nodes()[this.options.cy.nodes().length-1];tempchild.hide();tempchild.css("width",tempchild.data("width"));tempchild.css("height",tempchild.data("height"));tempchild.width();dummy.scratch("coseBilkent").tempchildren.push(tempchild)}}}}return memberGroups};_CoSELayout.prototype.performDFSOnCompounds=function(options){var compoundOrder=[];var roots=_CoSELayout.getTopMostNodes(this.options.eles.nodes());this.fillCompexOrderByDFS(compoundOrder,roots);return compoundOrder};_CoSELayout.prototype.fillCompexOrderByDFS=function(compoundOrder,children){for(var i=0;i<children.length;i++){var child=children[i];this.fillCompexOrderByDFS(compoundOrder,child.children());if(this.getToBeTiled(child)){compoundOrder.push(child)}}};_CoSELayout.prototype.clearCompounds=function(options){var childGraphMap=[];var compoundOrder=this.performDFSOnCompounds(options);_CoSELayout.compoundOrder=compoundOrder;this.processChildrenList(this.root,_CoSELayout.getTopMostNodes(this.options.eles.nodes()));for(var i=0;i<compoundOrder.length;i++){var lCompoundNode=_CoSELayout.idToLNode[compoundOrder[i].id()];childGraphMap[compoundOrder[i].id()]=compoundOrder[i].children();lCompoundNode.child=null}var tiledMemberPack=this.tileCompoundMembers(childGraphMap);return tiledMemberPack};_CoSELayout.prototype.clearZeroDegreeMembers=function(memberGroups){var tiledZeroDegreePack=[];for(var id in memberGroups){var compoundNode=_CoSELayout.idToLNode[id];tiledZeroDegreePack[id]=this.tileNodes(memberGroups[id]);compoundNode.rect.width=tiledZeroDegreePack[id].width;compoundNode.rect.height=tiledZeroDegreePack[id].height}return tiledZeroDegreePack};_CoSELayout.prototype.repopulateCompounds=function(tiledMemberPack){for(var i=_CoSELayout.compoundOrder.length-1;i>=0;i--){var id=_CoSELayout.compoundOrder[i].id();var lCompoundNode=_CoSELayout.idToLNode[id];var horizontalMargin=parseInt(_CoSELayout.compoundOrder[i].css("padding-left"));var verticalMargin=parseInt(_CoSELayout.compoundOrder[i].css("padding-top"));this.adjustLocations(tiledMemberPack[id],lCompoundNode.rect.x,lCompoundNode.rect.y,horizontalMargin,verticalMargin)}};_CoSELayout.prototype.repopulateZeroDegreeMembers=function(tiledPack){for(var i in tiledPack){var compound=this.cy.getElementById(i);var compoundNode=_CoSELayout.idToLNode[i];var horizontalMargin=parseInt(compound.css("padding-left"));var verticalMargin=parseInt(compound.css("padding-top"));this.adjustLocations(tiledPack[i],compoundNode.rect.x,compoundNode.rect.y,horizontalMargin,verticalMargin);var tempchildren=compound.scratch("coseBilkent").tempchildren;for(var i=0;i<tempchildren.length;i++){tempchildren[i].remove()}compound.remove()}};_CoSELayout.prototype.adjustLocations=function(organization,x,y,compoundHorizontalMargin,compoundVerticalMargin){x+=compoundHorizontalMargin;y+=compoundVerticalMargin;var left=x;for(var i=0;i<organization.rows.length;i++){var row=organization.rows[i];x=left;var maxHeight=0;for(var j=0;j<row.length;j++){var lnode=row[j];var node=this.cy.getElementById(lnode.id);lnode.rect.x=x;lnode.rect.y=y;x+=lnode.rect.width+organization.horizontalPadding;if(lnode.rect.height>maxHeight)maxHeight=lnode.rect.height}y+=maxHeight+organization.verticalPadding}};_CoSELayout.prototype.tileCompoundMembers=function(childGraphMap){var tiledMemberPack=[];for(var id in childGraphMap){var compoundNode=_CoSELayout.idToLNode[id];tiledMemberPack[id]=this.tileNodes(childGraphMap[id]);compoundNode.rect.width=tiledMemberPack[id].width+20;compoundNode.rect.height=tiledMemberPack[id].height+20}return tiledMemberPack};_CoSELayout.prototype.tileNodes=function(nodes){var self=this;var verticalPadding=typeof self.options.tilingPaddingVertical==="function"?self.options.tilingPaddingVertical.call():self.options.tilingPaddingVertical;var horizontalPadding=typeof self.options.tilingPaddingHorizontal==="function"?self.options.tilingPaddingHorizontal.call():self.options.tilingPaddingHorizontal;var organization={rows:[],rowWidth:[],rowHeight:[],width:20,height:20,verticalPadding:verticalPadding,horizontalPadding:horizontalPadding};var layoutNodes=[];for(var i=0;i<nodes.length;i++){var node=nodes[i];var lNode=_CoSELayout.idToLNode[node.id()];if(!node.scratch("coseBilkent")||!node.scratch("coseBilkent").dummy_parent_id){var owner=lNode.owner;owner.remove(lNode);this.gm.resetAllNodes();this.gm.getAllNodes()}layoutNodes.push(lNode)}layoutNodes.sort(function(n1,n2){if(n1.rect.width*n1.rect.height>n2.rect.width*n2.rect.height)return-1;if(n1.rect.width*n1.rect.height<n2.rect.width*n2.rect.height)return 1;return 0});for(var i=0;i<layoutNodes.length;i++){var lNode=layoutNodes[i];var cyNode=this.cy.getElementById(lNode.id).parent()[0];var minWidth=0;if(cyNode){minWidth=parseInt(cyNode.css("padding-left"))+parseInt(cyNode.css("padding-right"))}if(organization.rows.length==0){this.insertNodeToRow(organization,lNode,0,minWidth)}else if(this.canAddHorizontal(organization,lNode.rect.width,lNode.rect.height)){this.insertNodeToRow(organization,lNode,this.getShortestRowIndex(organization),minWidth)}else{this.insertNodeToRow(organization,lNode,organization.rows.length,minWidth)}this.shiftToLastRow(organization)}return organization};_CoSELayout.prototype.insertNodeToRow=function(organization,node,rowIndex,minWidth){var minCompoundSize=minWidth;if(rowIndex==organization.rows.length){var secondDimension=[];organization.rows.push(secondDimension);organization.rowWidth.push(minCompoundSize);organization.rowHeight.push(0)}var w=organization.rowWidth[rowIndex]+node.rect.width;if(organization.rows[rowIndex].length>0){w+=organization.horizontalPadding}organization.rowWidth[rowIndex]=w;if(organization.width<w){organization.width=w}var h=node.rect.height;if(rowIndex>0)h+=organization.verticalPadding;var extraHeight=0;if(h>organization.rowHeight[rowIndex]){extraHeight=organization.rowHeight[rowIndex];organization.rowHeight[rowIndex]=h;extraHeight=organization.rowHeight[rowIndex]-extraHeight}organization.height+=extraHeight;organization.rows[rowIndex].push(node)};_CoSELayout.prototype.getShortestRowIndex=function(organization){var r=-1;var min=Number.MAX_VALUE;for(var i=0;i<organization.rows.length;i++){if(organization.rowWidth[i]<min){r=i;min=organization.rowWidth[i]}}return r};_CoSELayout.prototype.getLongestRowIndex=function(organization){var r=-1;var max=Number.MIN_VALUE;for(var i=0;i<organization.rows.length;i++){if(organization.rowWidth[i]>max){r=i;max=organization.rowWidth[i]}}return r};_CoSELayout.prototype.canAddHorizontal=function(organization,extraWidth,extraHeight){var sri=this.getShortestRowIndex(organization);if(sri<0){return true}var min=organization.rowWidth[sri];if(min+organization.horizontalPadding+extraWidth<=organization.width)return true;var hDiff=0;if(organization.rowHeight[sri]<extraHeight){if(sri>0)hDiff=extraHeight+organization.verticalPadding-organization.rowHeight[sri]}var add_to_row_ratio;if(organization.width-min>=extraWidth+organization.horizontalPadding){add_to_row_ratio=(organization.height+hDiff)/(min+extraWidth+organization.horizontalPadding)}else{add_to_row_ratio=(organization.height+hDiff)/organization.width}hDiff=extraHeight+organization.verticalPadding;var add_new_row_ratio;if(organization.width<extraWidth){add_new_row_ratio=(organization.height+hDiff)/extraWidth}else{add_new_row_ratio=(organization.height+hDiff)/organization.width}if(add_new_row_ratio<1)add_new_row_ratio=1/add_new_row_ratio;if(add_to_row_ratio<1)add_to_row_ratio=1/add_to_row_ratio;return add_to_row_ratio<add_new_row_ratio};_CoSELayout.prototype.shiftToLastRow=function(organization){var longest=this.getLongestRowIndex(organization);var last=organization.rowWidth.length-1;var row=organization.rows[longest];var node=row[row.length-1];var diff=node.width+organization.horizontalPadding;if(organization.width-organization.rowWidth[last]>diff&&longest!=last){row.splice(-1,1);organization.rows[last].push(node);organization.rowWidth[longest]=organization.rowWidth[longest]-diff;organization.rowWidth[last]=organization.rowWidth[last]+diff;organization.width=organization.rowWidth[this.getLongestRowIndex(organization)];var maxHeight=Number.MIN_VALUE;for(var i=0;i<row.length;i++){if(row[i].height>maxHeight)maxHeight=row[i].height}if(longest>0)maxHeight+=organization.verticalPadding;var prevTotal=organization.rowHeight[longest]+organization.rowHeight[last];organization.rowHeight[longest]=maxHeight;if(organization.rowHeight[last]<node.height+organization.verticalPadding)organization.rowHeight[last]=node.height+organization.verticalPadding;var finalTotal=organization.rowHeight[longest]+organization.rowHeight[last];organization.height+=finalTotal-prevTotal;this.shiftToLastRow(organization)}};_CoSELayout.prototype.stop=function(){this.stopped=true;if(this.thread){this.thread.stop()}this.trigger("layoutstop");return this};_CoSELayout.prototype.processChildrenList=function(parent,children){var size=children.length;for(var i=0;i<size;i++){var theChild=children[i];this.options.eles.nodes().length;var children_of_children=theChild.children();var theNode;if(theChild.width()!=null&&theChild.height()!=null){theNode=parent.add(new CoSENode(_CoSELayout.layout.graphManager,new PointD(theChild.position("x"),theChild.position("y")),new DimensionD(parseFloat(theChild.width()),parseFloat(theChild.height()))))}else{theNode=parent.add(new CoSENode(this.graphManager))}theNode.id=theChild.data("id");_CoSELayout.idToLNode[theChild.data("id")]=theNode;if(isNaN(theNode.rect.x)){theNode.rect.x=0}if(isNaN(theNode.rect.y)){theNode.rect.y=0}if(children_of_children!=null&&children_of_children.length>0){var theNewGraph;theNewGraph=_CoSELayout.layout.getGraphManager().add(_CoSELayout.layout.newGraph(),theNode);this.processChildrenList(theNewGraph,children_of_children)}}};module.exports=function get(cytoscape){Thread=cytoscape.Thread;return _CoSELayout}},{"./CoSEConstants":141,"./CoSEEdge":142,"./CoSEGraph":143,"./CoSEGraphManager":144,"./CoSELayout":145,"./CoSENode":146,"./DimensionD":147,"./FDLayout":148,"./FDLayoutConstants":149,"./FDLayoutEdge":150,"./FDLayoutNode":151,"./HashMap":152,"./HashSet":153,"./IGeometry":154,"./IMath":155,"./Integer":156,"./LEdge":157,"./LGraph":158,"./LGraphManager":159,"./LGraphObject":160,"./LNode":161,"./Layout":162,"./LayoutConstants":163,"./Point":164,"./PointD":165,"./RandomSeed":166,"./RectangleD":167,"./Transform":168,"./UniqueIDGeneretor":169}],171:[function(require,module,exports){"use strict";var getLayout=require("./Layout");var register=function(cytoscape){var Layout=getLayout(cytoscape);cytoscape("layout","cose-bilkent",Layout)};if(typeof cytoscape!=="undefined"){register(cytoscape)}module.exports=register},{"./Layout":170}],172:[function(require,module,exports){var cytoscape=window.cytoscape=require("cytoscape");var panzoom=require("cytoscape-panzoom");var navigator=require("cytoscape-navigator");var cyqtip=require("cytoscape-qtip");var regCose=require("../../lib/js/cose-bilkent/src/index.js");var grid_guide=require("cytoscape-grid-guide");var undoRedo=require("cytoscape-undo-redo");var contextMenus=require("cytoscape-context-menus");require("bootstrap-select");var panzoomOpts=require("./PanzoomOptions.js");var styleSheet=require("./GraphStyleSheet.js");var edgeHandleOpts=require("./EdgeHandlesOptions.js");var LayoutProperties=require("./BackboneViews/LayoutPropertiesView.js");var GenomicDataExplorerView=require("./BackboneViews/GenomicDataExplorerView.js");var PathwayDetailsView=require("./BackboneViews/PathwayDetailsView.js");var GridOptionsView=require("./BackboneViews/GridOptionsView.js");var CBioPortalAccessView=require("./BackboneViews/CbioPortalAccessView.js");require("./FileOperationsManager.js");require("./OtherMenuOperations.js");require("./GenomicMenuOperations.js");require("./ViewOperationsManager.js");require("./GraphUtilities.js");var QtipManager=require("./QtipManager.js");var ContextMenuManager=require("./ContextMenuManager.js");var DragDropNodeAddPlugin=require("./DragDropNodeAddPlugin.js");var EditorActionsManager=require("./EditorActionsManager.js");var SaveLoadUtilities=require("./SaveLoadUtility.js");var CBioPortalAccessor=require("./cBioPortalAccessor.js");var notify=require("bootstrap-notify");window.notificationManager=require("./NotificationFactory");module.exports=function(){function AppManager(isCollaborative,realTimeManager){this.isCollaborative=isCollaborative;this.realTimeManager=realTimeManager;this.init();this.createSampleMenu();this.createCBioPortalAccessModal()}AppManager.prototype.init=function(){this.initCyJS();this.initCyHandlers();var that=this;window.onresize=function(){that.placePanzoomAndOverlay()};if(!this.isCollaborative){$(document).keydown(function(e){if(e.which===89&&(e.ctrlKey||event.metaKey)){window.undoRedoManager.redo()}else if(e.which===90&&(e.ctrlKey||event.metaKey)){window.undoRedoManager.undo()}})}else{$('a[role="redo"]').hide();$('a[role="undo"]').hide()}window.appManager=this};AppManager.prototype.placePanzoomAndOverlay=function(){var offset=5;var topCy=$(".cyContainer").offset().top;var leftCy=$(".cyContainer").offset().left;var heightCy=$(".cyContainer").outerHeight();var widthCy=$(".cyContainer").outerWidth();var heightNavigator=$(".cytoscape-navigator-wrapper").outerHeight();var widthNavigator=$(".cytoscape-navigator-wrapper").outerWidth();var heightPanzoom=$(".cy-panzoom").outerHeight();var widthPanzoom=$(".cy-panzoom").outerWidth();$(".cytoscape-navigator-wrapper").css("top",heightCy+topCy-heightNavigator-offset);$(".cytoscape-navigator-wrapper").css("left",widthCy+leftCy-widthNavigator-offset);$(".cy-panzoom").css("top",topCy+5);$(".cy-panzoom").css("left",widthCy+leftCy-55)};AppManager.prototype.createSampleMenu=function(){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var templateData=JSON.parse(request.responseText);for(var key in templateData){if(templateData.hasOwnProperty(key)){var newTCGAMenu=$('<li class="dropdown-submenu" id="'+key+'">'+'<a href="#">'+key+"</a>"+"</li>");var newTCGAPathway=$('<ul class="dropdown-menu"></ul>');for(var i in templateData[key]){var newPath=templateData[key][i];var pName=newPath.replace(/-/gi," ").substring(0,newPath.length-4);var sampleLink=$('<li><a  path="'+newPath+'" href="#">'+pName+"</a></li>");sampleLink.on("click",sampleMenuClickHandler);if(key.includes("PanCancer")){$("#panCancerSubMenu").append(sampleLink)}else{newTCGAPathway.append(sampleLink);newTCGAMenu.append(newTCGAPathway)}}if(!key.includes("PanCancer")&&!key.includes("Creighton")){$("#sampleSubMenu").append(newTCGAMenu)}}}}};function sampleMenuClickHandler(event){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var allEles=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(allEles.nodes,allEles.edges);window.undoRedoManager.reset();window.appManager.pathwayDetailsView.updatePathwayProperties({fileName:allEles.title+".txt",pathwayTitle:allEles.title,pathwayDescription:allEles.description})}};var pathwayName=event.target.attributes[0].value;request.open("GET","/pathway?filename="+pathwayName);request.send()}request.open("GET","/getTemplateFileData");request.send()};AppManager.prototype.createCBioPortalAccessModal=function(){var portalAccessor=new CBioPortalAccessor;var self=this;this.portalAccessView=new CBioPortalAccessView({el:$("#cbioPortalAccessDiv")});portalAccessor.fetchCancerStudies(function(cancerStudies){self.portalAccessView.updateCancerStudies(cancerStudies)})};AppManager.prototype.initCyJS=function(){panzoom(cytoscape,$);cyqtip(cytoscape,$);regCose(cytoscape);navigator(cytoscape);grid_guide(cytoscape,$);undoRedo(cytoscape);contextMenus(cytoscape,$);window.edgeAddingMode=0;cy=window.cy=cytoscape({container:document.querySelector("#cy"),boxSelectionEnabled:true,autounselectify:false,wheelSensitivity:.1,style:styleSheet,ready:function(){},textureOnViewport:false,motionBlur:true,layout:{name:"preset"}});window.editorActionsManager=this.editorActionsManager=new EditorActionsManager(this.isCollaborative,this.realTimeManager,window.cy);this.qtipManager=new QtipManager(window.cy),this.editorActionsManager;this.cxtMenuManager=new ContextMenuManager(window.cy,this.editorActionsManager);this.dragDropNodeAddManager=new DragDropNodeAddPlugin(this.editorActionsManager);this.layoutPropertiesView=new LayoutProperties({el:$("#layoutPropertiesDiv"),editorActionsManager:this.editorActionsManager}).render();this.gridOptionsView=new GridOptionsView({el:$("#gridOptionsDiv")}).render();this.genomicDataExplorerView=new GenomicDataExplorerView({el:$("#genomicDataExplorerDiv"),editorActionsManager:this.editorActionsManager}).render();this.pathwayDetailsView=new PathwayDetailsView({el:$("#pathwayDetailsDiv")}).render();cy.panzoom(panzoomOpts);cy.nodeadd({components:[{container:$("#simpleNodeDiv"),nodeType:"Gene"},{container:$("#familyNodeDiv"),nodeType:"Family"},{container:$("#complexNodeDiv"),nodeType:"Complex",icon:"fa fa-square-o"},{container:$("#compartmentNodeDiv"),nodeType:"Compartment",icon:"fa fa-square-o"},{container:$("#processNodeDiv"),nodeType:"Process"}]});cy.edgehandles(edgeHandleOpts);var navDefaults={container:".cytoscape-navigator-wrapper",viewLiveFramerate:0,thumbnailEventFramerate:10,thumbnailLiveFramerate:false,dblClickDelay:200,removeCustomContainer:true,rerenderDelay:100};var nav=cy.navigator(navDefaults);this.placePanzoomAndOverlay()};AppManager.prototype.initCyHandlers=function(){var that=this;var tappedBefore;var tappedTimeout;cy.on("tap",function(event){var tappedNow=event.cyTarget;if(tappedTimeout&&tappedBefore){clearTimeout(tappedTimeout)}if(tappedBefore===tappedNow){tappedNow.trigger("doubleTap");tappedBefore=null}else{tappedTimeout=setTimeout(function(){tappedBefore=null},300);tappedBefore=tappedNow}});cy.on("doubleTap","node",function(e){var eventIsDirect=e.cyTarget===this;if(eventIsDirect){$(".qtip").remove();that.qtipManager.addQtipToElements(e.cyTarget);var api=this.qtip("api");if(api){api.show()}}});cy.on("select","node",function(e){window.editorActionsManager.pushSelectedNodeStack(e.cyTarget)});cy.on("unselect","node",function(e){window.editorActionsManager.removeElementFromSelectedNodeStack(e.cyTarget)});cy.on("free","node",function(e){var selectedNodes=cy.nodes(":selected");var nodes=e.cyTarget;nodes=nodes.union(nodes.descendants());nodes=nodes.union(selectedNodes);that.editorActionsManager.moveElements(nodes)});cy.on("layoutstop",function(event){that.editorActionsManager.postLayout()});cy.on("add","node",function(event){cy.style().update();cy.forceRender()})};return AppManager}()},{"../../lib/js/cose-bilkent/src/index.js":171,"./BackboneViews/CbioPortalAccessView.js":174,"./BackboneViews/GenomicDataExplorerView.js":175,"./BackboneViews/GridOptionsView.js":176,"./BackboneViews/LayoutPropertiesView.js":177,"./BackboneViews/PathwayDetailsView.js":178,"./ContextMenuManager.js":180,"./DragDropNodeAddPlugin.js":181,"./EdgeHandlesOptions.js":182,"./EditorActionsManager.js":183,"./FileOperationsManager.js":184,"./GenomicMenuOperations.js":186,"./GraphStyleSheet.js":187,"./GraphUtilities.js":188,"./NotificationFactory":189,"./OtherMenuOperations.js":190,"./PanzoomOptions.js":191,"./QtipManager.js":192,"./SaveLoadUtility.js":196,"./ViewOperationsManager.js":197,"./cBioPortalAccessor.js":198,"bootstrap-notify":2,"bootstrap-select":3,cytoscape:113,"cytoscape-context-menus":17,"cytoscape-grid-guide":24,"cytoscape-navigator":28,"cytoscape-panzoom":29,"cytoscape-qtip":30,"cytoscape-undo-redo":31}],173:[function(require,module,exports){var BioGeneView=Backbone.View.extend({render:function(){var variables={geneDescription:this.model.geneDescription,geneAliases:this.parseDelimitedInfo(this.model.geneAliases,":",",",null),geneDesignations:this.parseDelimitedInfo(this.model.geneDesignations,":",",",null),geneLocation:this.model.geneLocation,geneMim:this.model.geneMim,geneId:this.model.geneId,geneUniprotId:this.extractFirstUniprotId(this.model.geneUniprotMapping),geneUniprotLinks:this.generateUniprotLinks(this.model.geneUniprotMapping),geneSummary:this.model.geneSummary};var template=_.template($("#biogene-template").html());template=template(variables);this.$el.html(template);this.format(this.model);return this.$el},format:function(){if(this.model.geneDescription==undefined)this.$el.find(".biogene-description").hide();if(this.model.geneAliases==undefined)this.$el.find(".biogene-aliases").hide();if(this.model.geneDesignations==undefined)this.$el.find(".biogene-designations").hide();if(this.model.geneChromosome==undefined)this.$el.find(".biogene-chromosome").hide();if(this.model.geneLocation==undefined)this.$el.find(".biogene-location").hide();if(this.model.geneMim==undefined)this.$el.find(".biogene-mim").hide();if(this.model.geneId==undefined)this.$el.find(".biogene-id").hide();if(this.model.geneUniprotMapping==undefined)this.$el.find(".biogene-uniprot-links").hide();if(this.model.geneSummary==undefined)this.$el.find(".node-details-summary").hide();var expanderOpts={slicePoint:100,expandPrefix:" ",expandText:" (...)",userCollapseText:" (show less)",moreClass:"expander-read-more",lessClass:"expander-read-less",detailClass:"expander-details",expandEffect:"fadeIn",collapseEffect:"fadeOut"};expanderOpts.slicePoint=2;expanderOpts.widow=0},generateUniprotLinks:function(mapping){var formatter=function(id){var tpl=_.template($("#uniprot-link-template").html());tpl=tpl({id:id});return tpl};if(mapping==undefined||mapping==null){return""}if(mapping.indexOf(":")<0){return""}else{mapping=mapping.substring(mapping.indexOf(":")+1);return", "+this.parseDelimitedInfo(mapping,":",",",formatter)}},extractFirstUniprotId:function(mapping){if(mapping==undefined||mapping==null){return""}var parts=mapping.split(":");
 
-};RealTimeManager.prototype.onFileLoaded=function(doc){var model=doc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var edgeMap=root.get(this.EDGEMAP_NAME);var realTimeLayoutProperties=root.get(this.LAYOUT_PROPS_NAME);var globalOptions=root.get(this.GLOBAL_OPTS_NAME);var genomicDataMap=root.get(this.GENOMIC_DATA_MAP_NAME);var visDataMap=root.get(this.VISIBLE_GENOMIC_DATA_MAP_NAME);var nodeMapEntries=nodeMap.values();var edgeMapEntries=edgeMap.values();window.editorActionsManager.addNewElementsLocally(nodeMapEntries,edgeMapEntries);window.editorActionsManager.updateLayoutPropertiesCallback(realTimeLayoutProperties);window.editorActionsManager.changeGlobalOptions(globalOptions);window.editorActionsManager.genomicDataOverlayManager.genomicDataMap=genomicDataMap.get("genomicData");window.editorActionsManager.genomicDataOverlayManager.visibleGenomicDataMapByType=visDataMap.get("visMap");window.editorActionsManager.genomicDataOverlayManager.showGenomicData();window.editorActionsManager.genomicDataOverlayManager.notifyObservers();cy.fit(50);this.realTimeDoc=doc;var nodeAddRemoveHandler=function(event){window.editorActionsManager.realTimeNodeAddRemoveEventCallBack(event)};var edgeAddRemoveHandler=function(event){window.editorActionsManager.realTimeEdgeAddRemoveEventCallBack(event)};var genomicDataAddRemoveHandler=function(event){window.editorActionsManager.realTimeGenomicDataHandler(event)};var genomicDataVisibilityChangeHandler=function(event){window.editorActionsManager.realTimeGenomicDataVsibilityHandler(event)};root.get(this.NODEMAP_NAME).addEventListener(gapi.drive.realtime.EventType.VALUE_CHANGED,nodeAddRemoveHandler);root.get(this.EDGEMAP_NAME).addEventListener(gapi.drive.realtime.EventType.VALUE_CHANGED,edgeAddRemoveHandler);root.get(this.GENOMIC_DATA_MAP_NAME).addEventListener(gapi.drive.realtime.EventType.VALUE_CHANGED,genomicDataAddRemoveHandler);root.get(this.VISIBLE_GENOMIC_DATA_MAP_NAME).addEventListener(gapi.drive.realtime.EventType.VALUE_CHANGED,genomicDataVisibilityChangeHandler);this.postFileLoad()};RealTimeManager.prototype.clearGenomicData=function(){var model=this.realTimeDoc.getModel();var root=model.getRoot();var genomicMap=root.get(this.GENOMIC_DATA_MAP_NAME);var genomicMapKeys=genomicMap.keys();model.beginCompoundOperation();for(var i in genomicMapKeys){genomicMap.delete(genomicMapKeys[i])}model.endCompoundOperation()};RealTimeManager.prototype.clearGenomicVisData=function(){var model=this.realTimeDoc.getModel();var root=model.getRoot();var map=root.get(this.VISIBLE_GENOMIC_DATA_MAP_NAME);var mapKeys=map.keys();model.beginCompoundOperation();for(var i in mapKeys){map.delete(mapKeys[i])}model.endCompoundOperation()};RealTimeManager.prototype.addGenomicData=function(_key,geneData){var model=this.realTimeDoc.getModel();var root=model.getRoot();var genomicMap=root.get(this.GENOMIC_DATA_MAP_NAME);genomicMap.set(_key,geneData)};RealTimeManager.prototype.addGenomicVisibilityData=function(cancerType,isVisible){var model=this.realTimeDoc.getModel();var root=model.getRoot();var map=root.get(this.VISIBLE_GENOMIC_DATA_MAP_NAME);map.set(cancerType,isVisible)};RealTimeManager.prototype.addNewNode=function(nodeData,posData){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var newNode=model.create(NodeR,{name:nodeData.name,type:nodeData.type,parent:nodeData.parent});if(posData){newNode.x=posData.x;newNode.y=posData.y}var realTimeGeneratedID=this.getCustomObjId(newNode);nodeMap.set(realTimeGeneratedID,newNode)};RealTimeManager.prototype.addNewEdge=function(edgeData){var model=this.realTimeDoc.getModel();var root=model.getRoot();var edgeMap=root.get(this.EDGEMAP_NAME);var newEdge=model.create(EdgeR,{type:edgeData.type,source:edgeData.source,target:edgeData.target});var realTimeGeneratedID=this.getCustomObjId(newEdge);edgeMap.set(realTimeGeneratedID,newEdge)};RealTimeManager.prototype.removeElement=function(elementID){var model=this.realTimeDoc.getModel();var root=model.getRoot();var edgeMap=root.get(this.EDGEMAP_NAME);var nodeMap=root.get(this.NODEMAP_NAME);if(nodeMap.has(elementID)){nodeMap.delete(elementID)}else if(edgeMap.has(elementID)){edgeMap.delete(elementID)}else{throw new Error("Element does not exists in Real Time")}};RealTimeManager.prototype.moveElement=function(ele){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var elementID=ele.id();var newPos=ele.position();if(nodeMap.has(elementID)){var tmpNode=nodeMap.get(elementID);model.beginCompoundOperation();tmpNode.x=newPos.x;tmpNode.y=newPos.y;model.endCompoundOperation()}else{throw new Error("Element does not exists in nodes !!! ")}};RealTimeManager.prototype.changeName=function(ele,newName){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var elementID=ele.id();if(nodeMap.has(elementID)){var tmpNode=nodeMap.get(elementID);model.beginCompoundOperation();tmpNode.name=newName;model.endCompoundOperation()}else{throw new Error("Element does not exists in nodes !!! ")}};RealTimeManager.prototype.changeParent=function(rootNode,newParentId,connectedEdges){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var nodeLookupTable={};var self=this;function traverseFromRoot(rootNode,parId){var refNode=rootNode.nodeRef;var children=rootNode.children;var newParentId=parId;if(refNode){var refNodeId=refNode.id();var nodeData=refNode.data();var posData=refNode.position();var newNodeData={name:nodeData.name,type:nodeData.type,x:posData.x,y:posData.y};if(parId){newNodeData.parent=parId}self.removeElement(refNodeId);var newNode=model.create(NodeR,newNodeData);var newNodeId=self.getCustomObjId(newNode);nodeMap.set(newNodeId,newNode);newParentId=newNodeId;nodeLookupTable[refNodeId]=newNodeId}for(var i in children){var childNode=children[i];traverseFromRoot(childNode,newParentId)}}traverseFromRoot(rootNode,newParentId);connectedEdges.forEach(function(edge,index){var edgeData=edge.data();self.removeElement(edge.id());var newSource=nodeLookupTable[edgeData.source];var newTarget=nodeLookupTable[edgeData.target];if(newSource){edgeData.source=newSource}if(newTarget){edgeData.target=newTarget}self.addNewEdge(edgeData)})};RealTimeManager.prototype.removeAllElements=function(){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var edgeMap=root.get(this.EDGEMAP_NAME);var nodeMapKeys=nodeMap.keys();var edgeMapKeys=edgeMap.keys();for(var index in nodeMapKeys){this.removeElement(nodeMapKeys[index])}for(var index in edgeMapKeys){this.removeElement(edgeMapKeys[index])}};RealTimeManager.prototype.loadGraph=function(nodes,edges){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var edgeMap=root.get(this.EDGEMAP_NAME);this.removeAllElements();var that=this;var oldIdNewIdMap={};function traverseTree(node,newParentId){node.data.x=node.position.x;node.data.y=node.position.y;if(newParentId){var parent=node.data.parent;if(parent){node.data.parent=newParentId}}var newNode=model.create(NodeR,node.data);var newNodeId=that.getCustomObjId(newNode);oldIdNewIdMap[node.data.id]=newNodeId;nodeMap.set(newNodeId,newNode);if(node.children.length>0){for(var i in node.children){var tmpNode=node.children[i];traverseTree(tmpNode,newNodeId)}}}var tree=window.GraphUtilities.createGraphHierarchyRealTime(nodes);for(var i in tree){var rootLevelNode=tree[i];traverseTree(rootLevelNode)}for(var i in edges){var edge=edges[i];edge.data.source=oldIdNewIdMap[edge.data.source];edge.data.target=oldIdNewIdMap[edge.data.target];var newEdge=model.create(EdgeR,edge.data);var newEdgeID=this.getCustomObjId(newEdge);edgeMap.set(newEdgeID,newEdge)}};RealTimeManager.prototype.mergeGraph=function(nodes,edges){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var edgeMap=root.get(this.EDGEMAP_NAME);var realTimeNodeMap=nodeMap.items();var realTimeNodeLookupTable={};var realTimeNodeNameLookupTable={};var oldIdNewIdMap={};var that=this;for(var i in realTimeNodeMap){var nodeMapItem=realTimeNodeMap[i];realTimeNodeLookupTable[nodeMapItem[0]]=nodeMapItem[1];realTimeNodeNameLookupTable[nodeMapItem[1].name]=nodeMapItem[1]}function traverseTree(node,newParentId){if(!(node.data.name in realTimeNodeNameLookupTable)){node.data.x=node.position.x;node.data.y=node.position.y;if(newParentId){var parent=node.data.parent;if(parent){node.data.parent=newParentId}}var newNode=model.create(NodeR,node.data);var newNodeId=that.getCustomObjId(newNode);oldIdNewIdMap[node.data.id]=newNodeId;nodeMap.set(newNodeId,newNode);if(node.children.length>0){for(var i in node.children){var tmpNode=node.children[i];traverseTree(tmpNode,newNodeId)}}}else{var sameNameNode=realTimeNodeNameLookupTable[node.data.name];var sameNodeId=that.getCustomObjId(sameNameNode);oldIdNewIdMap[node.data.id]=sameNodeId;if(node.children.length>0){for(var i in node.children){var tmpNode=node.children[i];traverseTree(tmpNode,sameNodeId)}}}}var tree=window.GraphUtilities.createGraphHierarchyRealTime(nodes);for(var i in tree){var rootLevelNode=tree[i];traverseTree(rootLevelNode,rootLevelNode.data.id)}for(var i in edges){var edge=edges[i];edge.data.source=oldIdNewIdMap[edge.data.source];edge.data.target=oldIdNewIdMap[edge.data.target];var newEdge=model.create(EdgeR,edge.data);var newEdgeID=this.getCustomObjId(newEdge);edgeMap.set(newEdgeID,newEdge)}};RealTimeManager.prototype.updateLayoutProperties=function(newLayoutProperties){var model=this.realTimeDoc.getModel();var root=model.getRoot();var layoutPropertiesR=root.get(this.LAYOUT_PROPS_NAME);model.beginCompoundOperation();for(var property in newLayoutProperties){if(newLayoutProperties.hasOwnProperty(property)){layoutPropertiesR[property]=newLayoutProperties[property]}}model.endCompoundOperation()};RealTimeManager.prototype.updateGlobalOptions=function(newOptions){var model=this.realTimeDoc.getModel();var root=model.getRoot();var globalOptions=root.get(this.GLOBAL_OPTS_NAME);model.beginCompoundOperation();for(var property in globalOptions){if(newOptions.hasOwnProperty(property)){globalOptions[property]=newOptions[property]}}model.endCompoundOperation()};RealTimeManager.prototype.getCustomObjId=function(object){return gapi.drive.realtime.custom.getId(object)};RealTimeManager.prototype.registerTypes=function(){this.createRealTimeObjectDefinitions()};RealTimeManager.prototype.createGraphHierarchy=function(nodes){var tree=[];var mappedArr={};for(var i=0,len=nodes.length;i<len;i++){var arrElem=nodes[i];mappedArr[arrElem.data.id]=arrElem;mappedArr[arrElem.data.id].children=[]}for(var id in mappedArr){var mappedElem=mappedArr[id];if(mappedElem.data.parent){mappedArr[mappedElem.data.parent].children.push(mappedElem)}else{tree.push(mappedElem)}}return tree};RealTimeManager.prototype.createRealTimeObjectDefinitions=function(){gapi.drive.realtime.custom.registerType(EdgeR,"EdgeR");gapi.drive.realtime.custom.registerType(NodeR,"NodeR");gapi.drive.realtime.custom.registerType(LayoutPropertiesR,"LayoutPropertiesR");gapi.drive.realtime.custom.registerType(GlobalOptionsR,"GlobalOptionsR");gapi.drive.realtime.custom.setInitializer(NodeR,NodeRInitializer);gapi.drive.realtime.custom.setInitializer(EdgeR,EdgeRInitializer);gapi.drive.realtime.custom.setInitializer(LayoutPropertiesR,LayoutPropertiesRInitializer);gapi.drive.realtime.custom.setInitializer(GlobalOptionsR,GlobalOptionsRInitializer);NodeR.prototype.name=gapi.drive.realtime.custom.collaborativeField("name");NodeR.prototype.type=gapi.drive.realtime.custom.collaborativeField("type");NodeR.prototype.x=gapi.drive.realtime.custom.collaborativeField("x");NodeR.prototype.y=gapi.drive.realtime.custom.collaborativeField("y");NodeR.prototype.parent=gapi.drive.realtime.custom.collaborativeField("parent");EdgeR.prototype.source=gapi.drive.realtime.custom.collaborativeField("source");EdgeR.prototype.target=gapi.drive.realtime.custom.collaborativeField("target");EdgeR.prototype.type=gapi.drive.realtime.custom.collaborativeField("type");LayoutPropertiesR.prototype.name=gapi.drive.realtime.custom.collaborativeField("name");LayoutPropertiesR.prototype.nodeRepulsion=gapi.drive.realtime.custom.collaborativeField("nodeRepulsion");LayoutPropertiesR.prototype.nodeOverlap=gapi.drive.realtime.custom.collaborativeField("nodeOverlap");LayoutPropertiesR.prototype.idealEdgeLength=gapi.drive.realtime.custom.collaborativeField("idealEdgeLength");LayoutPropertiesR.prototype.edgeElasticity=gapi.drive.realtime.custom.collaborativeField("edgeElasticity");LayoutPropertiesR.prototype.nestingFactor=gapi.drive.realtime.custom.collaborativeField("nestingFactor");LayoutPropertiesR.prototype.gravity=gapi.drive.realtime.custom.collaborativeField("gravity");LayoutPropertiesR.prototype.numIter=gapi.drive.realtime.custom.collaborativeField("numIter");LayoutPropertiesR.prototype.tile=gapi.drive.realtime.custom.collaborativeField("tile");LayoutPropertiesR.prototype.animate=gapi.drive.realtime.custom.collaborativeField("animate");LayoutPropertiesR.prototype.randomize=gapi.drive.realtime.custom.collaborativeField("randomize");LayoutPropertiesR.prototype.gravityRangeCompound=gapi.drive.realtime.custom.collaborativeField("gravityRangeCompound");LayoutPropertiesR.prototype.gravityCompound=gapi.drive.realtime.custom.collaborativeField("gravityCompound");LayoutPropertiesR.prototype.gravityRange=gapi.drive.realtime.custom.collaborativeField("gravityRange");GlobalOptionsR.prototype.zoomLevel=gapi.drive.realtime.custom.collaborativeField("zoomLevel");GlobalOptionsR.prototype.panLevel=gapi.drive.realtime.custom.collaborativeField("panLevel");var self=this;function registerAttributeChangeHandlersNodeR(){function updateElementHandler(event){var node=event.currentTarget;window.editorActionsManager.updateElementCallback(node,self.getCustomObjId(node))}this.addEventListener(gapi.drive.realtime.EventType.OBJECT_CHANGED,updateElementHandler)}function registerAttributeChangeHandlersLayoutPropertiesR(){function updateLayoutPropsHandler(event){var layoutProps=event.currentTarget;window.editorActionsManager.updateLayoutPropertiesCallback(layoutProps)}this.addEventListener(gapi.drive.realtime.EventType.OBJECT_CHANGED,updateLayoutPropsHandler)}function registerAttributeChangeHandlersGlobalOptionsR(){function updateGlobalOptionsRHandler(event){var globalOptions=event.currentTarget;window.editorActionsManager.changeGlobalOptions(globalOptions)}this.addEventListener(gapi.drive.realtime.EventType.OBJECT_CHANGED,updateGlobalOptionsRHandler)}gapi.drive.realtime.custom.setOnLoaded(NodeR,registerAttributeChangeHandlersNodeR);gapi.drive.realtime.custom.setOnLoaded(LayoutPropertiesR,registerAttributeChangeHandlersLayoutPropertiesR);gapi.drive.realtime.custom.setOnLoaded(GlobalOptionsR,registerAttributeChangeHandlersGlobalOptionsR)};var NodeR=function(){};var EdgeR=function(){};var LayoutPropertiesR=function(){};var GlobalOptionsR=function(){};var NodeRInitializer=function(params){var model=gapi.drive.realtime.custom.getModel(this);model.beginCompoundOperation();this.name=params.name||"undefined";this.type=params.type||"undefined";this.parent=params.parent||"undefined";this.x=params.x||"undefined";this.y=params.y||"undefined";model.endCompoundOperation()};var EdgeRInitializer=function(params){var model=gapi.drive.realtime.custom.getModel(this);model.beginCompoundOperation();this.type=params.type||"undefined";this.source=params.source||"undefined";this.target=params.target||"undefined";model.endCompoundOperation()};var LayoutPropertiesRInitializer=function(params){var model=gapi.drive.realtime.custom.getModel(this);this.name=params.name||"undefined";this.nodeRepulsion=params.nodeRepulsion||"undefined";this.nodeOverlap=params.nodeOverlap||"undefined";this.idealEdgeLength=params.idealEdgeLength||"undefined";this.edgeElasticity=params.edgeElasticity||"undefined";this.nestingFactor=params.nestingFactor||"undefined";this.gravity=params.gravity||"undefined";this.numIter=params.numIter||"undefined";this.tile=params.tile||"undefined";this.animate=params.animate||"undefined";this.randomize=params.randomize||false;this.gravityRangeCompound=params.gravityRangeCompound||"undefined";this.gravityCompound=params.gravityCompound||"undefined";this.gravityRange=params.gravityRange||"undefined"};var GlobalOptionsRInitializer=function(params){var model=gapi.drive.realtime.custom.getModel(this);model.beginCompoundOperation();this.zoomLevel=params.zoomLevel||"undefined";this.panLevel=params.panLevel||"undefined";model.endCompoundOperation()};return RealTimeManager}()},{}],193:[function(require,module,exports){module.exports=function(){window.utils={};utils.RealtimeUtils=function(options){this.init(options)};utils.RealtimeUtils.prototype={clientId:null,mimeType:"application/vnd.google-apps.drive-sdk",refreshInterval:18e5,scopes:["https://www.googleapis.com/auth/drive.install","https://www.googleapis.com/auth/drive.file","https://www.googleapis.com/auth/drive.readonly"],TCGA_APP_FOLDER_NAME:"TCGA_Pathway_Curation_Tool_Files",init:function(options){this.mergeOptions(options);this.authorizer=new utils.RealtimeAuthorizer(this);this.createRealtimeFile=this.createRealtimeFile.bind(this)},authorize:function(onAuthComplete,usePopup){this.authorizer.start(onAuthComplete,usePopup)},mergeOptions:function(options){for(var option in options){this[option]=options[option]}},getParam:function(urlParam){var regExp=new RegExp(urlParam+"=(.*?)($|&)","g");var match=window.location.search.match(regExp);if(match&&match.length){match=match[0];match=match.replace(urlParam+"=","").replace("&","")}else{match=null}return match},createRealtimeFile:function(title,callback,parentFolder){var that=this;var insertHash={resource:{mimeType:that.mimeType,name:title}};if(parentFolder)insertHash.resource.parents=[parentFolder];if(window.gapi.client.drive){window.gapi.client.drive.files.create(insertHash).then(function(resp){var fileId=resp.result.id;that.shareRealTimeFile(fileId);callback(resp)},function(reason){alert("An Error happened: "+reason.result.error.message);window.location.href="/"})}else{window.gapi.client.load("drive","v3",function(){window.gapi.client.drive.files.create(insertHash).then(function(resp){var fileId=resp.result.id;that.shareRealTimeFile(fileId);callback(resp)},function(reason){alert("An Error happened: "+reason.result.error.message);window.location.href="/"})})}},createAppFile:function(title,callback){var that=this;this.createAppFolder(function(folderId){that.createRealtimeFile(title,callback,folderId)})},createAppFolder:function(successHandler,appfolderName){var appFName=appfolderName||this.TCGA_APP_FOLDER_NAME;var that=this;if(window.gapi.client.drive){searchFolder(appFName,successHandler)}else{window.gapi.client.load("drive","v3",function(){searchFolder(appFName,successHandler)})}function searchFolder(appFolderName){var driveAPI=window.gapi.client.drive;var fileResource={q:"name='"+appFolderName+"' and "+"mimeType = 'application/vnd.google-apps.folder' and "+"trashed = false",spaces:"drive"};driveAPI.files.list(fileResource).then(function(res){var files=res.result.files;if(files.length>0){var id=files[0].id;successHandler(id)}else{var createProps={resource:{name:appFName,mimeType:"application/vnd.google-apps.folder"}};driveAPI.files.create(createProps).then(function(resp){var newFolderId=resp.result.id;successHandler(newFolderId)},function(err){console.log(err)})}},function(err){console.log(err)})}},shareRealTimeFile:function(fileId){window.gapi.client.drive.permissions.create({resource:{type:"anyone",role:"writer",allowFileDiscovery:false},fileId:fileId}).then(function(resp){console.log("File shared succesfully !")},function(reason){console.log("An Error happened: "+reason.result.error.message)})},load:function(documentId,onFileLoaded,initializeModel){var that=this;window.gapi.drive.realtime.load(documentId,function(doc){onFileLoaded(doc)},initializeModel,this.onError.bind(this))},onError:function(error){if(error.type==window.gapi.drive.realtime.ErrorType.TOKEN_REFRESH_REQUIRED){this.authorizer.authorize(function(){console.log("Error, auth refreshed")},false)}else if(error.type==window.gapi.drive.realtime.ErrorType.CLIENT_ERROR){alert("An Error happened: "+error.message);window.location.href="/"}else if(error.type==window.gapi.drive.realtime.ErrorType.NOT_FOUND){alert("The file was not found. It does not exist or you do not have "+"read access to the file.");window.location.href="/"}else if(error.type==window.gapi.drive.realtime.ErrorType.FORBIDDEN){alert("You do not have access to this file. Try having the owner share"+"it with you from Google Drive.");window.location.href="/"}}};utils.RealtimeAuthorizer=function(realtimeUtil){this.util=realtimeUtil;this.handleAuthResult=this.handleAuthResult.bind(this);this.token=null};utils.RealtimeAuthorizer.prototype={start:function(onAuthComplete,usePopup){var that=this;window.gapi.load("auth:client,drive-realtime,drive-share",{callback:function(){that.authorize(onAuthComplete,usePopup)}});if(this.authTimer){window.clearTimeout(this.authTimer)}this.refreshAuth()},authorize:function(onAuthComplete,usePopup){this.onAuthComplete=onAuthComplete;window.gapi.auth.authorize({client_id:this.util.clientId,scope:this.util.scopes,immediate:!usePopup},this.handleAuthResult)},handleAuthResult:function(authResult){if(authResult&&!authResult.error){this.token=authResult.access_token}this.onAuthComplete(authResult)},refreshAuth:function(){var that=this;this.authTimer=setTimeout(function(){that.authorize(function(){console.log("Refreshed Auth Token")},false);that.refreshAuth()},this.util.refreshInterval)}}}()},{}],194:[function(require,module,exports){var SaveLoadUtilities=require("./SaveLoadUtility.js");module.exports=function(){var SVGExporter=function(){this.SVGNameSpace="http://www.w3.org/2000/svg";this.svg=document.createElementNS(this.SVGNameSpace,"svg");this.NODE_FILL_COLOR="rgb(255,255,255)";this.FAMILY_FILL_COLOR="rgb(255,255,255)";this.FAMILY_STROKE_COLOR="rgb(204,204,204)";this.NODE_STROKE_COLOR="rgb(0,0,0)";this.COMPARTMENT_STROKE_WIDTH=2;this.NODE_STROKE_WIDTH=1;this.NODE_OPACITY=.5;this.ROUNDING_FACTOR=6;this.GENOMICDATA_LABEL_Y_OFFSET=-15;this.EDGE_WIDTH=1;this.T_WIDTH=2;this.T_HEIGHT=8;this.T_ARROW_HEAD_OFFSET=2;this.TRIANGLE_ARROW_HEAD_HEIGHT=8;this.TRIANGLE_ARROW_HEAD_WIDTH=8;this.DASH_PARAMETERS="5, 3";this.COMPOUND_MARGIN=8;this.NODE_FONT_SIZE=14};SVGExporter.prototype.resetSVG=function(){this.svg=document.createElementNS(this.SVGNameSpace,"svg")};SVGExporter.prototype.exportGraph=function(nodes,edges){this.resetSVG();var cyBounds=cy.extent();this.svg.setAttribute("viewBox",cyBounds.x1+" "+cyBounds.y1+" "+cyBounds.w+" "+cyBounds.h);var that=this;var nodeMap={};var nodeTree=window.GraphUtilities.createGraphHierarchy(nodes);var traverseFunction=function(node){nodeMap[node.id()]=node;var genomicDataSVG=window.editorActionsManager.getGenomicDataSVG(node).children;that.svg.appendChild(that.createRect(node));var labelOffset=genomicDataSVG&&genomicDataSVG.length>0?that.GENOMICDATA_LABEL_Y_OFFSET:0;that.svg.appendChild(that.createText(node,labelOffset));if(genomicDataSVG){while(genomicDataSVG.length>0){var elemSVG=genomicDataSVG[0];var nodePosition=node.position();var svgX=elemSVG.getAttribute("x");var svgY=elemSVG.getAttribute("y");elemSVG.setAttribute("x",nodePosition.x-node.width()/2+parseFloat(svgX));elemSVG.setAttribute("y",nodePosition.y-node.height()/2+parseFloat(svgY));that.svg.appendChild(elemSVG)}}if(node.childNodes){for(var i in node.childNodes){traverseFunction(node.childNodes[i])}}};for(var i in nodeTree){var rootLevelNode=nodeTree[i];traverseFunction(rootLevelNode)}edges.forEach(function(edge){var source=nodeMap[edge.source().id()];var target=nodeMap[edge.target().id()];that.drawEdge(edge,source,target)});return this.svg.outerHTML};SVGExporter.prototype.drawEdge=function(edge,source,target){var edgeType=edge.data().type;var sourceRectangle={x:source.position().x,y:source.position().y,width:source.width(),height:source.height()};var targetRectangle={x:target.position().x,y:target.position().y,width:target.width(),height:target.height()};if(source.isParent()){sourceRectangle.width+=this.COMPOUND_MARGIN;sourceRectangle.height+=this.COMPOUND_MARGIN}if(target.isParent()){targetRectangle.width+=this.COMPOUND_MARGIN;targetRectangle.height+=this.COMPOUND_MARGIN}var clipPoints=this.findClippingPoints(sourceRectangle,targetRectangle);var unitV=unitVector({x:clipPoints.targetClipPoints.x-clipPoints.sourceClipPoints.x,y:clipPoints.targetClipPoints.y-clipPoints.sourceClipPoints.y});var inverseUnitV=scale(unitV,-1);var targetX=clipPoints.targetClipPoints.x;var targetY=clipPoints.targetClipPoints.y;if(edgeType=="ACTIVATES"||edgeType=="INDUCES"){targetX=clipPoints.targetClipPoints.x+this.TRIANGLE_ARROW_HEAD_HEIGHT*inverseUnitV.x;targetY=clipPoints.targetClipPoints.y+this.TRIANGLE_ARROW_HEAD_HEIGHT*inverseUnitV.y;var point1Vector=rotateVector(unitV,Math.PI/2);var point2Vector=rotateVector(unitV,-Math.PI/2);point1Vector=scale(point1Vector,this.TRIANGLE_ARROW_HEAD_WIDTH/2);point2Vector=scale(point2Vector,this.TRIANGLE_ARROW_HEAD_WIDTH/2);var point1X=targetX+point1Vector.x;var point1Y=targetY+point1Vector.y;var point2X=targetX+point2Vector.x;var point2Y=targetY+point2Vector.y;var polySVG=document.createElementNS(this.SVGNameSpace,"polygon");polySVG.setAttribute("points",point1X+","+point1Y+","+point2X+","+point2Y+","+clipPoints.targetClipPoints.x+","+clipPoints.targetClipPoints.y);this.svg.appendChild(polySVG)}else if(edgeType=="INHIBITS"||edgeType=="REPRESSES"){targetX=clipPoints.targetClipPoints.x+this.T_ARROW_HEAD_OFFSET*inverseUnitV.x;targetY=clipPoints.targetClipPoints.y+this.T_ARROW_HEAD_OFFSET*inverseUnitV.y;var point1Vector=rotateVector(unitV,Math.PI/2);var point2Vector=rotateVector(unitV,-Math.PI/2);point1Vector=scale(point1Vector,this.T_HEIGHT/2);point2Vector=scale(point2Vector,this.T_HEIGHT/2);var point1X=targetX+point1Vector.x;var point1Y=targetY+point1Vector.y;var point2X=targetX+point2Vector.x;var point2Y=targetY+point2Vector.y;var lineSVG=document.createElementNS(this.SVGNameSpace,"line");lineSVG.setAttribute("x1",point1X);lineSVG.setAttribute("y1",point1Y);lineSVG.setAttribute("x2",point2X);lineSVG.setAttribute("y2",point2Y);lineSVG.setAttribute("stroke-width",this.T_WIDTH);lineSVG.setAttribute("stroke","black");this.svg.appendChild(lineSVG)}var lineSVG=document.createElementNS(this.SVGNameSpace,"line");lineSVG.setAttribute("x1",clipPoints.sourceClipPoints.x);lineSVG.setAttribute("y1",clipPoints.sourceClipPoints.y);lineSVG.setAttribute("x2",targetX);lineSVG.setAttribute("y2",targetY);lineSVG.setAttribute("stroke-width",this.EDGE_WIDTH);lineSVG.setAttribute("stroke","black");if(edgeType=="INDUCES"||edgeType=="REPRESSES"){lineSVG.setAttribute("stroke-dasharray",this.DASH_PARAMETERS)}this.svg.appendChild(lineSVG)};SVGExporter.prototype.findClippingPoints=function(sourceRectangle,targetRectangle){var sourceAABB={xMin:sourceRectangle.x-sourceRectangle.width/2,xMax:sourceRectangle.x+sourceRectangle.width/2,yMin:sourceRectangle.y-sourceRectangle.height/2,yMax:sourceRectangle.y+sourceRectangle.height/2};var targetAABB={xMin:targetRectangle.x-targetRectangle.width/2,xMax:targetRectangle.x+targetRectangle.width/2,yMin:targetRectangle.y-targetRectangle.height/2,yMax:targetRectangle.y+targetRectangle.height/2};var line1={x1:sourceRectangle.x,y1:sourceRectangle.y,x2:targetRectangle.x,y2:targetRectangle.y};var line2={x1:targetRectangle.x,y1:targetRectangle.y,x2:sourceRectangle.x,y2:sourceRectangle.y};var returnObj={sourceClipPoints:clipLine(line1,sourceAABB),targetClipPoints:clipLine(line2,targetAABB)};return returnObj};SVGExporter.prototype.createRect=function(node){var nodeRectangle=document.createElementNS(this.SVGNameSpace,"rect");var nodePosition=node.position();if(node.isParent()){nodeRectangle.setAttribute("x",nodePosition.x-node.width()/2-this.COMPOUND_MARGIN/2);nodeRectangle.setAttribute("y",nodePosition.y-node.height()/2-this.COMPOUND_MARGIN/2);nodeRectangle.setAttribute("width",node.width()+this.COMPOUND_MARGIN);nodeRectangle.setAttribute("height",node.height()+this.COMPOUND_MARGIN)}else{nodeRectangle.setAttribute("x",nodePosition.x-node.width()/2);nodeRectangle.setAttribute("y",nodePosition.y-node.height()/2);nodeRectangle.setAttribute("width",node.width());nodeRectangle.setAttribute("height",node.height())}nodeRectangle=this.createStyleForNodes(node,nodeRectangle);return nodeRectangle};SVGExporter.prototype.createText=function(node,genomicDataOffset){var verticalTextOffset=5;var nodePosition=node.position();var svgText=document.createElementNS(this.SVGNameSpace,"text");if(node.isParent()){verticalTextOffset=20;svgText.setAttribute("x",nodePosition.x);svgText.setAttribute("y",nodePosition.y+node.height()/2+verticalTextOffset)}else{svgText.setAttribute("x",nodePosition.x);svgText.setAttribute("y",nodePosition.y+verticalTextOffset+genomicDataOffset)}svgText.setAttribute("font-family","Arial");svgText.setAttribute("text-anchor","middle");svgText.setAttribute("font-size",this.NODE_FONT_SIZE);svgText.innerHTML=node.data().name;return svgText};SVGExporter.prototype.createStyleForNodes=function(node,nodeRectangle){var nodeType=node.data().type;var strokeWidth=this.NODE_STROKE_WIDTH;var strokeColor=this.NODE_STROKE_COLOR;var fillColor=this.NODE_FILL_COLOR;var opacity=this.NODE_OPACITY;var strokeOpacity=1;if(nodeType=="GENE"||nodeType=="COMPARTMENT"){nodeRectangle.setAttribute("rx",this.ROUNDING_FACTOR);nodeRectangle.setAttribute("ry",this.ROUNDING_FACTOR);if(nodeType=="COMPARTMENT")strokeWidth=this.COMPARTMENT_STROKE_WIDTH}if(nodeType=="PROCESS"){opacity=0;strokeOpacity=0}if(nodeType=="FAMILY"){fillColor=this.FAMILY_FILL_COLOR;strokeColor=this.FAMILY_STROKE_COLOR}var styleString="stroke-width:"+strokeWidth+";"+"stroke:"+strokeColor+";"+"fill-opacity:"+opacity+";"+"fill:"+fillColor+";"+"stroke-opacity:"+strokeOpacity+";";nodeRectangle.setAttribute("style",styleString);return nodeRectangle};function clipLine(line,rectangle){var INSIDE=0;var LEFT=1;var RIGHT=2;var BOTTOM=4;var TOP=8;function getOutCode(point,rectangle){var outcode=INSIDE;if(point.x<rectangle.xMin)outcode=outcode|LEFT;else if(point.x>rectangle.xMax)outcode=outcode|RIGHT;if(point.y<rectangle.yMin)outcode=outcode|TOP;else if(point.y>rectangle.yMax)outcode=outcode|BOTTOM;return outcode}var outcode0=getOutCode({x:line.x1,y:line.y1},rectangle);var outcode1=getOutCode({x:line.x2,y:line.y2},rectangle);var slope=(line.y2-line.y1)/(line.x2-line.x1);var returnCoords={x:line.x1,y:line.y1,slope:slope};var accept=false;while(true){if(!(outcode0|outcode1)){accept=true;break}else if(outcode0&outcode1){break}else{var outCode=outcode0?outcode0:outcode1;if(outCode&TOP){returnCoords.x=line.x1+(rectangle.yMin-line.y1)/slope;returnCoords.y=rectangle.yMin}else if(outCode&BOTTOM){returnCoords.x=line.x1+(rectangle.yMax-line.y1)/slope;returnCoords.y=rectangle.yMax}else if(outCode&RIGHT){returnCoords.x=rectangle.xMax;returnCoords.y=line.y1+slope*(rectangle.xMax-line.x1)}else if(outCode&LEFT){returnCoords.x=rectangle.xMin;returnCoords.y=line.y1+slope*(rectangle.xMin-line.x1)}if(outCode==outcode0){outcode0=getOutCode({x:returnCoords.x,y:returnCoords.y},rectangle)}else{outcode1=getOutCode({x:returnCoords.x,y:returnCoords.y},rectangle)}}}return returnCoords}function dotProduct(v1,v2){var newX=v1.x*v2.x;var newY=v1.y*v2.y;return{x:newX,y:newY}}function unitVector(v){var inverseLength=1/Math.sqrt(v.x*v.x+v.y*v.y);return{x:v.x*inverseLength,y:v.y*inverseLength}}function rotateVector(v,radians){var newX=v.x*Math.cos(radians)-v.y*Math.sin(radians);var newY=v.x*Math.sin(radians)+v.y*Math.cos(radians);return{x:newX,y:newY}}function scale(v,scalar){var newX=v.x*scalar;var newY=v.y*scalar;return{x:newX,y:newY}}return SVGExporter}()},{"./SaveLoadUtility.js":195}],195:[function(require,module,exports){var SaveLoadUtils={exportGraph:function(pathwayDetails){
-var returnString=pathwayDetails.pathwayTitle+"\n\n";returnString+=pathwayDetails.pathwayDescription+"\n\n";var nodes=pathwayDetails.graphJSON.elements.nodes;var edges=pathwayDetails.graphJSON.elements.edges;returnString+="--NODE_NAME	NODE_ID	NODE_TYPE	PARENT_ID	POSX	POSY--"+"\n";if(nodes){for(var i=0;i<nodes.length;i++){var nodeName=nodes[i].data.name;var parentID=nodes[i].data.parent;var nodeID=nodes[i].data.id;var pos=nodes[i].position;var nodeType=nodes[i].data.type;if(nodes[i].data.parent){parentID=nodes[i].data.parent}else{parentID=-1}returnString+=nodeName+"	"+nodeID+"	"+nodeType+"	"+parentID+"	"+parseInt(pos.x)+"	"+parseInt(pos.y)+"	\n"}}returnString+="\n";returnString+="--EDGE_ID	SOURCE	TARGET	EDGE_TYPE\n";if(edges){for(var i=0;i<edges.length;i++){var edgeID=edges[i].data.id;var edgeType=edges[i].data.type;var source=edges[i].data.source;var target=edges[i].data.target;returnString+=edgeID+"	"+source+"	"+target+"	"+edgeType+"\n"}}return returnString},parseGraph:function(graphText){var allEles=[];var nodes=[];var edges=[];var seperator=/\r?\n|\r/;var lines=graphText.split(seperator);var edgesStartIndex=-1;var graphDataIndex=5;var title=lines[0];var description=lines[2];if(lines[0].includes("--NODE_NAME")){graphDataIndex=1;title="New Pathway";description=""}for(var i=graphDataIndex;i<lines.length;i++){if(lines[i].length==0||lines[i]===""){edgesStartIndex=i+2;break}var lineData=lines[i].split("	");var nodeName=lineData[0];var nodeID=lineData[1];var nodeType=lineData[2];var parentID=lineData[3];var posX=lineData.length>4?lineData[4]:"0";var posY=lineData.length>5?lineData[5]:"0";var newNode={group:"nodes",data:{id:nodeID,name:nodeName,type:nodeType},position:{x:parseInt(posX),y:parseInt(posY)}};if(parentID!="-1"){newNode.data.parent=parentID}nodes.push(newNode)}for(var i=edgesStartIndex;i<lines.length;i++){if(lines[i].length==0){break}var lineData=lines[i].split("	");var edgeID=lineData[0];var edgeSource=lineData[1];var edgeTarget=lineData[2];var edgeType=lineData[3];newEdge={group:"edges",data:{id:edgeID,type:edgeType,source:edgeSource,target:edgeTarget}};edges.push(newEdge)}return{title:title,description:description,nodes:nodes,edges:edges}}};module.exports=SaveLoadUtils},{}],196:[function(require,module,exports){module.exports=function($){"use strict";var movedNodes=[];function handleNodeAlignment(param){var tmpNodes=window.editorActionsManager.selecteNodeStack;var nodes=cy.collection();var nodeMap={};movedNodes=[];for(var key in tmpNodes){nodes=nodes.add(tmpNodes[key])}nodes.forEach(function(node,index){if(node.isParent()){nodeMap[node.id()]=node}});if(nodes.length>0){var firstSelected=nodes[0];var firstBbox=firstSelected.boundingBox();nodes.forEach(function(node,index){if(index==0){return}if(nodeMap[node.parent().id()]==null){var newPosition=calculateNewPosition(param,node,firstBbox);changePosition(node,0,0,newPosition)}});window.editorActionsManager.handleChangePositionByAlignment(movedNodes)}}function calculateNewPosition(param,node,referenceBbox){var currentPos=node.position();var currentBbox=node.boundingBox();var newPosition;if(param==="vLeft"){newPosition={x:referenceBbox.x1+currentBbox.w/2,y:currentPos.y}}else if(param==="vCen"){newPosition={x:referenceBbox.x1+referenceBbox.w/2,y:currentPos.y}}else if(param==="vRight"){newPosition={x:referenceBbox.x2-currentBbox.w/2,y:currentPos.y}}else if(param==="hTop"){newPosition={x:currentPos.x,y:referenceBbox.y1+currentBbox.h/2}}else if(param==="hMid"){newPosition={x:currentPos.x,y:referenceBbox.y1+referenceBbox.h/2}}else if(param==="hBot"){newPosition={x:currentPos.x,y:referenceBbox.y2-currentBbox.h/2}}else{console.log("Error: wrong alignment name "+param);return}return newPosition}function changePosition(node,dx,dy,newPos){if(node.isParent()){var childNodes=node.children();var parentBbox=node.boundingBox();childNodes.forEach(function(childNode,index){var childBbox=childNode.boundingBox();var _dx=-(parentBbox.x1-childBbox.x1)-parentBbox.w/2+childBbox.w/2;var _dy=-(parentBbox.y1-childBbox.y1)-parentBbox.h/2+childBbox.h/2;if(childNode.isParent()){changePosition(childNode,0,0,{x:newPos.x+_dx,y:newPos.y+_dy})}else{changePosition(childNode,_dx,_dy,newPos)}})}else{var position={x:newPos.x+dx,y:newPos.y+dy};movedNodes.push({node:node,nextPosition:position,oldPosition:null})}}$(".viewDropdown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="grid"){$("#gridOptionsDiv").modal("show")}else{handleNodeAlignment(dropdownLinkRole)}})}(window.$)},{}],197:[function(require,module,exports){module.exports=function(){function CBioPortalAccessor(){this.GET_ALL_CANCER_STUDIES_URL="http://www.cbioportal.org/webservice.do?cmd=getCancerStudies";this.GET_GENETIC_PROFILES_URL="http://www.cbioportal.org/webservice.do?cmd=getGeneticProfiles&cancer_study_id=";this.GET_PROFILE_DATA_URL="http://www.cbioportal.org/webservice.do?cmd=getProfileData";this.MRNA_EXP_STUDY_NAME="_mrna_median_Zscores";this.CNA_EXP_STUDY_NAME="_gistic";this.MUTATION_EXP_STUDY_NAME="_mutations";this.CNA_DELETION=-2;this.CNA_GAIN=2;this.Z_SCORE_UPPER_THRESHOLD=2;this.Z_SCORE_LOWER_THRESHOLD=-2;this.MUTATION="Mutation";this.GENE_EXPRESSION="Gene Expression";this.CNA="Copy Number Alteration"}CBioPortalAccessor.prototype.fetchCancerStudies=function(callbackFunction){var cancerStudies={};var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var seperator=/\r?\n|\r/;var lines=request.responseText.split(seperator);for(var i=1;i<lines.length;i++){if(lines[i].length<=0)continue;var lineData=lines[i].split("	");cancerStudies[lineData[0]]=lineData}callbackFunction(cancerStudies)}};request.open("GET",this.GET_ALL_CANCER_STUDIES_URL);request.send()};CBioPortalAccessor.prototype.getSupportedGeneticProfiles=function(cancerStudy,callbackFunction){var outData={};var request=new XMLHttpRequest;var self=this;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var seperator=/\r?\n|\r/;var lines=request.responseText.split(seperator);for(var i=1;i<lines.length;i++){if(lines[i].length<=0)continue;var lineData=lines[i].split("	");var cancerProfileName=lineData[0];if(self.isSupportedCancerProfile(cancerProfileName)){outData[cancerProfileName]=lineData}}callbackFunction(outData)}};request.open("GET",this.GET_GENETIC_PROFILES_URL+cancerStudy);request.send()};CBioPortalAccessor.prototype.isSupportedCancerProfile=function(cancerProfileName){return cancerProfileName.endsWith(this.MRNA_EXP_STUDY_NAME)||cancerProfileName.endsWith(this.CNA_EXP_STUDY_NAME)||cancerProfileName.endsWith(this.MUTATION_EXP_STUDY_NAME)};CBioPortalAccessor.prototype.getDataType=function(cancerProfileName){if(cancerProfileName.endsWith(this.MRNA_EXP_STUDY_NAME)){return this.GENE_EXPRESSION}else if(cancerProfileName.endsWith(this.CNA_EXP_STUDY_NAME)){return this.CNA}else if(cancerProfileName.endsWith(this.MUTATION_EXP_STUDY_NAME)){return this.MUTATION}};CBioPortalAccessor.prototype.calcAlterationPercentages=function(paramLines,geneticProfileId,callbackFunction){var seperator=/\r?\n|\r/;var lines=paramLines.split(seperator);var startIndex=0;for(var i in lines){if(!lines[i].startsWith("#")){startIndex=parseInt(i);break}}var tumorSamples=lines[startIndex].split("	");var numOfTumorSamples=tumorSamples.length-2;var outData={};outData[geneticProfileId]={};var geneticProfileType=this.getDataType(geneticProfileId);for(var i=startIndex+1;i<lines.length;i++){if(lines[i].length<=0)continue;var lineData=lines[i].split("	");var profileDataAlteration=0;for(var j=2;j<lineData.length;j++){if(lineData[j]!=="NaN"){if(geneticProfileType==this.MUTATION)profileDataAlteration++;else if(geneticProfileType==this.CNA&&(lineData[j]==this.CNA_GAIN||lineData[j]==this.CNA_DELETION))profileDataAlteration++;else if(geneticProfileType==this.GENE_EXPRESSION&&(parseInt(lineData[j])>=this.Z_SCORE_UPPER_THRESHOLD||parseInt(lineData[j])<=this.Z_SCORE_LOWER_THRESHOLD))profileDataAlteration++}}outData[geneticProfileId][lineData[1]]=profileDataAlteration/numOfTumorSamples*100}callbackFunction(outData)};CBioPortalAccessor.prototype.getProfileData=function(params,callbackFunction){var outData={};var request=new XMLHttpRequest;var self=this;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){self.calcAlterationPercentages(request.responseText,params.geneticProfileId,callbackFunction)}};var queryURL=this.GET_PROFILE_DATA_URL;queryURL+="&case_set_id="+params.caseSetId+"_sequenced";queryURL+="&genetic_profile_id="+params.geneticProfileId;queryURL+="&gene_list=";for(var i=0;i<params.genes.length;i++){queryURL+=params.genes[i];if(i!=params.genes.length-1)queryURL+="+"}request.open("GET",queryURL);request.send()};return CBioPortalAccessor}()},{}],198:[function(require,module,exports){var $=window.$=window.jQuery=require("jquery");var _=window._=require("underscore");var Backbone=window.Backbone=require("backbone");Backbone.$=$;require("bootstrap");require("./RealTimeUtils");var WelcomePageView=require("./BackboneViews/WelcomePageView.js");var AppManager=require("./AppManager");var RealTimeModule=require("./RealTimeManager");var SaveLoadUtilities=require("./SaveLoadUtility.js");$(window).load(function(){function getLocalPathway(pathwayName){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var allEles=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(allEles.nodes,allEles.edges);window.appManager.pathwayDetailsView.updatePathwayProperties({fileName:allEles.title+".txt",pathwayTitle:allEles.title,pathwayDescription:allEles.description})}else{console.log(request.responseText)}};request.open("GET","/pathway?filename="+pathwayName);request.send()}var localUsageCallback=function(postSuccess){var appInstance=new AppManager(false);postSuccess();var uri=window.location.search;if(uri.length>0){var pathwayName=uri.substring(uri.indexOf("=")+1,uri.length);getLocalPathway(pathwayName)}};var collaborativeUsageCallback=function(postSuccess){var realTimeManager=new RealTimeModule(postSuccess);var realTimeAuthCallback=function(response){if(response.error){function popUpAuthHandler(response){if(response.error)console.log(response.error);var appInstance=new AppManager(true,realTimeManager);realTimeManager.initRealTimeAPI()}realTimeManager.authorize(popUpAuthHandler,true)}else{var appInstance=new AppManager(true,realTimeManager);realTimeManager.initRealTimeAPI()}};realTimeManager.authorize(realTimeAuthCallback,false)};var welPage=new WelcomePageView({el:$(".welcomePageContainer"),localUsageCallback:localUsageCallback,collaborativeUsageCallback:collaborativeUsageCallback}).render();var uri=window.location.search;if(uri.length>0){var uriTerm=uri.substring(1,uri.indexOf("="));if(uriTerm==="id"){$(".landingContent h3").hide();$(".welPageButtons").hide();$("#collaborativeUsage").click();$(".continueButton").click().hide()}else if(uriTerm==="filename"){$(".landingContent h3").hide();$(".welPageButtons").hide();$("#localUsage").click();$(".continueButton").click().hide()}}})},{"./AppManager":172,"./BackboneViews/WelcomePageView.js":179,"./RealTimeManager":192,"./RealTimeUtils":193,"./SaveLoadUtility.js":195,backbone:1,bootstrap:4,jquery:139,underscore:140}],199:[function(require,module,exports){},{}],200:[function(require,module,exports){exports.endianness=function(){return"LE"};exports.hostname=function(){if(typeof location!=="undefined"){return location.hostname}else return""};exports.loadavg=function(){return[]};exports.uptime=function(){return 0};exports.freemem=function(){return Number.MAX_VALUE};exports.totalmem=function(){return Number.MAX_VALUE};exports.cpus=function(){return[]};exports.type=function(){return"Browser"};exports.release=function(){if(typeof navigator!=="undefined"){return navigator.appVersion}return""};exports.networkInterfaces=exports.getNetworkInterfaces=function(){return{}};exports.arch=function(){return"javascript"};exports.platform=function(){return"browser"};exports.tmpdir=exports.tmpDir=function(){return"/tmp"};exports.EOL="\n"},{}],201:[function(require,module,exports){(function(process){function normalizeArray(parts,allowAboveRoot){var up=0;for(var i=parts.length-1;i>=0;i--){var last=parts[i];if(last==="."){parts.splice(i,1)}else if(last===".."){parts.splice(i,1);up++}else if(up){parts.splice(i,1);up--}}if(allowAboveRoot){for(;up--;up){parts.unshift("..")}}return parts}var splitPathRe=/^(\/?|)([\s\S]*?)((?:\.{1,2}|[^\/]+?|)(\.[^.\/]*|))(?:[\/]*)$/;var splitPath=function(filename){return splitPathRe.exec(filename).slice(1)};exports.resolve=function(){var resolvedPath="",resolvedAbsolute=false;for(var i=arguments.length-1;i>=-1&&!resolvedAbsolute;i--){var path=i>=0?arguments[i]:process.cwd();if(typeof path!=="string"){throw new TypeError("Arguments to path.resolve must be strings")}else if(!path){continue}resolvedPath=path+"/"+resolvedPath;resolvedAbsolute=path.charAt(0)==="/"}resolvedPath=normalizeArray(filter(resolvedPath.split("/"),function(p){return!!p}),!resolvedAbsolute).join("/");return(resolvedAbsolute?"/":"")+resolvedPath||"."};exports.normalize=function(path){var isAbsolute=exports.isAbsolute(path),trailingSlash=substr(path,-1)==="/";path=normalizeArray(filter(path.split("/"),function(p){return!!p}),!isAbsolute).join("/");if(!path&&!isAbsolute){path="."}if(path&&trailingSlash){path+="/"}return(isAbsolute?"/":"")+path};exports.isAbsolute=function(path){return path.charAt(0)==="/"};exports.join=function(){var paths=Array.prototype.slice.call(arguments,0);return exports.normalize(filter(paths,function(p,index){if(typeof p!=="string"){throw new TypeError("Arguments to path.join must be strings")}return p}).join("/"))};exports.relative=function(from,to){from=exports.resolve(from).substr(1);to=exports.resolve(to).substr(1);function trim(arr){var start=0;for(;start<arr.length;start++){if(arr[start]!=="")break}var end=arr.length-1;for(;end>=0;end--){if(arr[end]!=="")break}if(start>end)return[];return arr.slice(start,end-start+1)}var fromParts=trim(from.split("/"));var toParts=trim(to.split("/"));var length=Math.min(fromParts.length,toParts.length);var samePartsLength=length;for(var i=0;i<length;i++){if(fromParts[i]!==toParts[i]){samePartsLength=i;break}}var outputParts=[];for(var i=samePartsLength;i<fromParts.length;i++){outputParts.push("..")}outputParts=outputParts.concat(toParts.slice(samePartsLength));return outputParts.join("/")};exports.sep="/";exports.delimiter=":";exports.dirname=function(path){var result=splitPath(path),root=result[0],dir=result[1];if(!root&&!dir){return"."}if(dir){dir=dir.substr(0,dir.length-1)}return root+dir};exports.basename=function(path,ext){var f=splitPath(path)[2];if(ext&&f.substr(-1*ext.length)===ext){f=f.substr(0,f.length-ext.length)}return f};exports.extname=function(path){return splitPath(path)[3]};function filter(xs,f){if(xs.filter)return xs.filter(f);var res=[];for(var i=0;i<xs.length;i++){if(f(xs[i],i,xs))res.push(xs[i])}return res}var substr="ab".substr(-1)==="b"?function(str,start,len){return str.substr(start,len)}:function(str,start,len){if(start<0)start=str.length+start;return str.substr(start,len)}}).call(this,require("_process"))},{_process:202}],202:[function(require,module,exports){var process=module.exports={};var queue=[];var draining=false;var currentQueue;var queueIndex=-1;function cleanUpNextTick(){draining=false;if(currentQueue.length){queue=currentQueue.concat(queue)}else{queueIndex=-1}if(queue.length){drainQueue()}}function drainQueue(){if(draining){return}var timeout=setTimeout(cleanUpNextTick);draining=true;var len=queue.length;while(len){currentQueue=queue;queue=[];while(++queueIndex<len){if(currentQueue){currentQueue[queueIndex].run()}}queueIndex=-1;len=queue.length}currentQueue=null;draining=false;clearTimeout(timeout)}process.nextTick=function(fun){var args=new Array(arguments.length-1);if(arguments.length>1){for(var i=1;i<arguments.length;i++){args[i-1]=arguments[i]}}queue.push(new Item(fun,args));if(queue.length===1&&!draining){setTimeout(drainQueue,0)}};function Item(fun,array){this.fun=fun;this.array=array}Item.prototype.run=function(){this.fun.apply(null,this.array)};process.title="browser";process.browser=true;process.env={};process.argv=[];process.version="";process.versions={};function noop(){}process.on=noop;process.addListener=noop;process.once=noop;process.off=noop;process.removeListener=noop;process.removeAllListeners=noop;process.emit=noop;process.binding=function(name){throw new Error("process.binding is not supported")};process.cwd=function(){return"/"};process.chdir=function(dir){throw new Error("process.chdir is not supported")};process.umask=function(){return 0}},{}]},{},[198]);
\ No newline at end of file
+if(parts.length>0){return parts[0]}return""},parseDelimitedInfo:function(info,delimiter,separator,formatter){if(info==undefined||info==null){return info}var text="";var parts=info.split(delimiter);if(parts.length>0){if(formatter){text=formatter(parts[0])}else{text=parts[0]}}for(var i=1;i<parts.length;i++){text+=separator+" ";if(formatter){text+=formatter(parts[i])}else{text+=parts[i]}}return text}});module.exports=BioGeneView},{}],174:[function(require,module,exports){var CBioPortalAccessor=require("../cBioPortalAccessor.js");var cbioPortalAccessView=Backbone.View.extend({cachedLoadingTemplate:_.template($("#loading-small-template").html())(),events:{"click #getProfileData":"fetchProfileData"},initialize:function(options){this.portalAccessor=new CBioPortalAccessor;this.$el.find("#cancerDropDown").append("<h4>Please Wait Loading Cancer Studies</h4>");this.$el.find("#cancerDropDown").append(this.cachedLoadingTemplate)},updateCancerStudies:function(cancerStudies){this.cancerStudies=cancerStudies;this.updateView()},updateView:function(){var self=this;this.$el.find("#cancerDropDown").empty();this.$el.find("#dataTypeSelection").empty();this.$el.find("#cancerDropDown").append("<h4>Select Cancer Study</h4>");var cancerStudiesDropDown=$('<select  id="cancerSelectBox" class="selectpicker" title="Select a Cancer Study"></select>');for(var cancerName in this.cancerStudies){cancerStudiesDropDown.append("<option key="+cancerName+">"+this.cancerStudies[cancerName][1]+"</option>")}$("#cancerDropDown").append(cancerStudiesDropDown);cancerStudiesDropDown.selectpicker({liveSearch:true,container:"body",liveSearchPlaceholder:"Search Cancer Study"});$("#cancerSelectBox").change(function(){self.$el.find("#dataTypeSelection").empty();self.$el.find("#dataTypeSelection").append(self.cachedLoadingTemplate);var key=$(this).find("option:selected").attr("key");self.currenCancerStudy=self.cancerStudies[key];var createDataTypeSelectionCallback=function(cancerData){self.$el.find("#dataTypeSelection").empty();var dataTypes={};for(var obj in cancerData){var dataType=self.portalAccessor.getDataType(obj);dataTypes[dataType]=cancerData[obj]}self.$el.find("#dataTypeSelection").append("<h4>Data Types</h4>");for(var obj in dataTypes){var newCheckbox=$('<div class="checkbox">'+"<label>"+'<input type="checkbox" cancerKey="'+dataTypes[obj][0]+'" value="">'+obj+"</label>"+"</div>");newCheckbox.find('input[type="checkbox"]').on("click",function(evt){var checkedNum=self.$el.find('input[type="checkbox"]:checked').length;if(checkedNum>=1)self.showSubmitButton();else if(checkedNum==0)self.hideSubmitButton()});self.$el.find("#dataTypeSelection").append(newCheckbox)}};self.portalAccessor.getSupportedGeneticProfiles(key,createDataTypeSelectionCallback)})},render:function(){this.hideSubmitButton();if(!this.cancerStudies){this.$el.modal("show");return}this.updateView();this.$el.modal("show")},hideSubmitButton:function(){$("#getProfileData").hide()},showSubmitButton:function(){$("#getProfileData").show()},fetchProfileData:function(){var checkedDataTypes=this.$el.find('input[type="checkbox"]:checked');var geneSymbols=window.editorActionsManager.getGeneSymbols();var self=this;for(var i=0;i<checkedDataTypes.length;i++){self.portalAccessor.getProfileData({caseSetId:self.currenCancerStudy[0],geneticProfileId:$(checkedDataTypes[i]).attr("cancerkey"),genes:geneSymbols},function(data){window.editorActionsManager.addPortalGenomicData(data)})}this.$el.modal("toggle")}});module.exports=cbioPortalAccessView},{"../cBioPortalAccessor.js":198}],175:[function(require,module,exports){var genomicDataExplorer=Backbone.View.extend({cachedTpl:_.template($("#genomicDataExplorerTemplate").html()),events:{"click #save-genomic":"saveHandler"},initialize:function(options){this.$el.append(this.cachedTpl());this.editorActionsManagerRef=options.editorActionsManager;this.editorActionsManagerRef.registerGenomicDataObserver(this);this.renderEmptyView()},render:function(){},renderEmptyView:function(){this.$el.find(".genomicDataContentDiv").append('<h4 class="modal-title">There is currently no data to show</h4>');this.$el.find("#save-genomic").hide()},saveHandler:function(event){var dataMap={};this.$el.find(".genomicDataContentDiv label").each(function(){var jqEl=$(this);var cancerType=jqEl.text();var isChecked=jqEl.find("input").is(":checked");dataMap[cancerType]=isChecked});this.editorActionsManagerRef.updateGenomicDataVisibility(dataMap);this.$el.modal("toggle")},notify:function(data){this.$el.find(".genomicDataContentDiv").empty();var cancerTypes=this.editorActionsManagerRef.genomicDataOverlayManager.visibleGenomicDataMapByType;if(cancerTypes&&Object.keys(cancerTypes).length===0){this.renderEmptyView()}else{this.$el.find(".genomicDataContentDiv").append('<h4 class="modal-title">Data Set To Show:</h4>');var checkboxDiv=$('<div class="genomicChecboxDiv"></div>');for(var cancerType in cancerTypes){var checkboxContent=$('<label class="checkbox"><input type="checkbox" value="">'+cancerType+"</label>");checkboxContent.find("input").attr("checked",cancerTypes[cancerType]);checkboxDiv.append(checkboxContent)}this.$el.find(".genomicDataContentDiv").append(checkboxDiv);this.$el.find("#save-genomic").show()}}});module.exports=genomicDataExplorer},{}],176:[function(require,module,exports){var gridOptionsView=Backbone.View.extend({currentProperties:null,events:{"click #applyGridOptions":"saveProperties"},initialize:function(options){this.defaultGridGuideOptions={snapToGrid:false,discreteDrag:false,guidelines:true,resize:false,gridSpacing:20,parentPadding:false,drawGrid:false,guidelinesStackOrder:4,guidelinesTolerance:2,guidelinesStyle:{lineWidth:2,strokeStyle:"#000000",lineDash:[7,15]}};this.copyProperties(this.defaultGridGuideOptions);cy.gridGuide(this.currentProperties)},copyProperties:function(params){this.currentProperties=_.clone(params)},render:function(){var templateProperties=_.clone(this.currentProperties);this.template=_.template($("#gridOptionsTemplate").html());var tplContent=this.template(templateProperties);this.$el.empty();this.$el.append(tplContent);this.delegateEvents()},saveProperties:function(event){this.currentProperties.gridSpacing=Number(this.$el.find("#gridSize").val());this.currentProperties.drawGrid=this.$el.find("#showGrid").is(":checked");this.currentProperties.guidelines=this.$el.find("#showGuides").is(":checked");this.currentProperties.snapToGrid=this.$el.find("#snapToGrid").is(":checked");this.currentProperties.guidelinesStyle.strokeStyle=this.$el.find('input[type="color"]').val();cy.gridGuide(this.currentProperties);this.$el.modal("toggle")},changeParameters:function(){this.$el.find("#gridSize").val(this.currentProperties.gridSize);this.$el.find("#showGrid")[0].checked=this.currentProperties.showGrid;this.$el.find("#showGuides")[0].checked=this.currentProperties.showGuides;this.$el.find('input[type="color"]').val(this.currentProperties.guidelinesStyle.strokeStyle)},defaultLayoutHandler:function(event){},notify:function(){}});module.exports=gridOptionsView},{}],177:[function(require,module,exports){var layoutProps=Backbone.View.extend({currentLayoutProperties:null,events:{"click #save-layout":"saveLayoutHandler","click #default-layout":"defaultLayoutHandler"},initialize:function(options){this.editorActionsManagerRef=options.editorActionsManager;this.copyProperties(this.editorActionsManagerRef.layoutProperties);this.editorActionsManagerRef.registerObserver(this)},copyProperties:function(params){this.currentLayoutProperties=_.clone(params)},render:function(){var templateProperties=_.clone(this.currentLayoutProperties);this.template=_.template($("#layoutPropertiesTemplate").html());var tplContent=this.template(templateProperties);this.$el.empty();this.$el.append(tplContent);this.delegateEvents()},saveLayoutHandler:function(event){this.currentLayoutProperties.nodeRepulsion=Number(this.$el.find("#node-repulsion").val());this.currentLayoutProperties.nodeOverlap=Number(this.$el.find("#node-overlap").val());this.currentLayoutProperties.idealEdgeLength=Number(this.$el.find("#ideal-edge-length").val());this.currentLayoutProperties.edgeElasticity=Number(this.$el.find("#edge-elasticity").val());this.currentLayoutProperties.nestingFactor=Number(this.$el.find("#nesting-factor").val());this.currentLayoutProperties.gravity=Number(this.$el.find("#gravity").val());this.currentLayoutProperties.numIter=Number(this.$el.find("#num-iter").val());this.currentLayoutProperties.gravityRangeCompound=Number(this.$el.find("#comp-gravRange").val());this.currentLayoutProperties.gravityCompound=Number(this.$el.find("#comp-grav").val());this.currentLayoutProperties.gravityRange=Number(this.$el.find("#grav-range").val());this.currentLayoutProperties.tile=this.$el.find("#tile").is(":checked");this.currentLayoutProperties.animate=this.$el.find("#animate").is(":checked");this.currentLayoutProperties.randomize=!this.$el.find("#randomize").is(":checked");this.editorActionsManagerRef.saveLayoutProperties(this.currentLayoutProperties);this.$el.modal("toggle")},changeParameters:function(){this.$el.find("#node-repulsion").val(this.currentLayoutProperties.nodeRepulsion);this.$el.find("#node-overlap").val(this.currentLayoutProperties.nodeOverlap);this.$el.find("#ideal-edge-length").val(this.currentLayoutProperties.idealEdgeLength);this.$el.find("#edge-elasticity").val(this.currentLayoutProperties.edgeElasticity);this.$el.find("#nesting-factor").val(this.currentLayoutProperties.nestingFactor);this.$el.find("#gravity").val(this.currentLayoutProperties.gravity);this.$el.find("#comp-gravRange").val(this.currentLayoutProperties.gravityRangeCompound);this.$el.find("#comp-grav").val(this.currentLayoutProperties.gravityCompound);this.$el.find("#grav-range").val(this.currentLayoutProperties.gravityRange);this.$el.find("#num-iter").val(this.currentLayoutProperties.numIter);this.$el.find("#tile")[0].checked=this.currentLayoutProperties.tile;this.$el.find("#animate")[0].checked=this.currentLayoutProperties.animate;this.$el.find("#randomize")[0].checked=!this.currentLayoutProperties.randomize},defaultLayoutHandler:function(event){this.copyProperties(this.editorActionsManagerRef.defaultLayoutProperties);this.changeParameters()},notify:function(){this.copyProperties(this.editorActionsManagerRef.layoutProperties);this.changeParameters()}});module.exports=layoutProps},{}],178:[function(require,module,exports){var pathwayDetails=Backbone.View.extend({currentLayoutProperties:null,events:{"click #savePathwayDetails":"saveHandler"},initialize:function(options){this.properties={pathwayName:"pathway.txt",pathwayTitle:"New Pathway",pathwayDescription:""}},saveHandler:function(event){this.properties.pathwayName=this.$el.find("#pName").val();this.properties.pathwayTitle=this.$el.find("#pTitle").val();this.properties.pathwayDescription=this.$el.find("#pDesc").val();this.$el.modal("toggle")},updatePathwayProperties:function(data){this.properties.pathwayName=data.fileName;this.properties.pathwayTitle=data.pathwayTitle;this.properties.pathwayDescription=data.pathwayDescription},copyProperties:function(params){this.currentLayoutProperties=_.clone(params)},render:function(){this.template=_.template($("#pathwayDetailsTemplate").html());var tplContent=this.template(this.properties);this.$el.empty();this.$el.append(tplContent);this.delegateEvents();this.$el.find("input").on("keypress",function(e){if(e.keyCode==13){e.preventDefault()}});return this}});module.exports=pathwayDetails},{}],179:[function(require,module,exports){var WelcomePageView=Backbone.View.extend({cachedTpl:_.template($("#welcomePageTemplate").html()),events:{"click #localUsage":"localUsageHandler","click #collaborativeUsage":"collaborativeUsageHandler","click .continueButton":"continueButtonHandler"},initialize:function(options){this.localUsageCallback=options.localUsageCallback;this.collaborativeUsageCallback=options.collaborativeUsageCallback;this.modelSelectionMap={NONE:-1,LOCAL:0,COLLAB:1};this.modelSelection=this.modelSelectionMap.NONE},render:function(){this.$el.empty();this.$el.append(this.cachedTpl());this.$el.find("#localUsage").popover({container:"body",content:"Create a pathway individually",placement:"left",delay:100,trigger:"manual"});this.$el.find("#collaborativeUsage").popover({container:"body",html:true,content:function(){return $("#collaborativePopoverContent").html()},placement:"right",delay:200,trigger:"manual"})},localUsageHandler:function(event){if(this.modelSelection==this.modelSelectionMap.LOCAL)return;$(".popover").popover("hide");this.$el.find(".welcomePageCheckable").removeClass("active");$(event.currentTarget).addClass("active");this.$el.find("#localUsage").popover("show");this.$el.find(".continueRow").css("visibility","visible");this.modelSelection=this.modelSelectionMap.LOCAL},collaborativeUsageHandler:function(event){if(this.modelSelection==this.modelSelectionMap.COLLAB)return;$(".popover").popover("hide");this.$el.find(".welcomePageCheckable").removeClass("active");$(event.currentTarget).addClass("active");this.$el.find("#collaborativeUsage").popover("show");this.$el.find(".continueRow").css("visibility","visible");this.modelSelection=this.modelSelectionMap.COLLAB},continueButtonHandler:function(event){$(".popover").hide();var self=this;this.$el.find(".welcomePageLoading").show();function postHandler(){self.postSuccess()}if(this.modelSelection!=this.modelSelectionMap.NONE){if(this.modelSelection==this.modelSelectionMap.LOCAL){this.localUsageCallback(postHandler)}else if(this.modelSelection==this.modelSelectionMap.COLLAB){this.collaborativeUsageCallback(postHandler)}}},postSuccess:function(){this.$el.empty();this.$el.fadeOut(800)}});module.exports=WelcomePageView},{}],180:[function(require,module,exports){module.exports=function(){"use strict";var CxtMenu=function(cy,editorActionsManager){this.cy=cy;this.editorActionsManager=editorActionsManager;this.init()};CxtMenu.prototype.init=function(){var classRef=this;var options={menuItems:[{id:"remove",title:"Delete",selector:"node, edge",onClickFunction:function(event){var ele=event.cyTarget;var selectedElements=cy.nodes(":selected").union(ele);classRef.editorActionsManager.removeElement(selectedElements)},disabled:false,hasTrailingDivider:true,coreAsWell:false},{id:"addSelected",title:"Add selected into this",selector:"node",onClickFunction:function(event){var ele=event.cyTarget;var selectedNodes=cy.nodes(":selected");var containerType=ele.data("type");var validNodes=cy.collection();if(ele._private.data["type"]==="GENE"||selectedNodes.size()<1){return}else{var notValid=false;selectedNodes.forEach(function(tmpNode,i){if(ele.id()==tmpNode.id()){notValid=true;return false}if(tmpNode.isParent()){notValid=isChildren(tmpNode,ele);if(notValid){return false}}});if(notValid){return}}selectedNodes.forEach(function(tmpNode,i){if(containerType=="FAMILY"||containerType=="COMPLEX"){if(tmpNode.data("type")!="COMPARTMENT"&&tmpNode.data("type")!="PROCESS"){validNodes=validNodes.add(tmpNode)}}else{validNodes=validNodes.add(tmpNode)}});var compId=ele.id();classRef.editorActionsManager.changeParents(validNodes,compId)},disabled:false,hasTrailingDivider:true,coreAsWell:false},{id:"removeSelected",title:"Remove selected from parent",selector:"node",onClickFunction:function(event){var ele=event.cyTarget;var selectedNodes=cy.nodes(":selected").union(ele);var notValid=false;selectedNodes.forEach(function(tmpNode,i){if(tmpNode.isParent()){notValid=isChildren(tmpNode,ele);if(notValid){return false}}});if(notValid){return}classRef.editorActionsManager.changeParents(selectedNodes,null)},disabled:false,hasTrailingDivider:true,coreAsWell:false},{id:"performLayout",title:"Perform Layout",coreAsWell:true,onClickFunction:function(event){classRef.editorActionsManager.performLayout()},disabled:false,hasTrailingDivider:true}],menuItemClasses:[],contextMenuClasses:[]};this.cy.contextMenus(options)};window.edgeAddingMode=false;function isChildren(node,queryNode){var parent=queryNode.parent()[0];while(parent){if(parent.id()==node.id()){return true}parent=parent.parent()[0]}return false}return CxtMenu}()},{}],181:[function(require,module,exports){module.exports=function($,$$){"use strict";var NodeAdd=function(editorActionsManager){this.editorActionsManager=editorActionsManager;this.initNodeAdd()};NodeAdd.prototype.initNodeAdd=function(){var nodeAddClass=this;var defaults={height:30,width:30,padding:5,backgroundColorDiv:"#fbfbfb",borderColorDiv:"#fff",borderWidthDiv:"0px",borderRadiusDiv:"5px",icon:"",nodeParams:function(){return{}}};$.fn.cytoscapeNodeadd=function(params){var options=$.extend(true,{},defaults,params);var fn=params;var functions={destroy:function(){var $this=$(this);$this.find(".ui-cytoscape-nodeadd").remove()},init:function(){return $(this).each(function(){var components=options.components;for(var index in components){var component=components[index];var dragContainer=component.container;var explanationText=component.explanationText;var $nodeadd=$('<div class="ui-cytoscape-nodeadd"></div>');dragContainer.append($nodeadd);var $nodeDragHandle=$('<div class="ui-cytoscape-nodeadd-nodediv">                                                 <span id="ui-cytoscape-nodeadd-icon" class="draggable" nodeType="'+component.nodeType+'">                                                  <img style="width:110px;" src="./assets/'+component.nodeType+'.png" alt="" />                                                </span>                                              </div>');$nodeadd.append($nodeDragHandle);$nodeDragHandle.bind("mousedown",function(e){e.stopPropagation();e.preventDefault()});dragContainer.find(".ui-cytoscape-nodeadd-nodediv").css({background:options.backgroundColorDiv,border:options.borderWidthDiv+" solid "+options.borderColorDiv,"border-radius":options.borderRadiusDiv});dragContainer.find("#ui-cytoscape-nodeadd-icon").draggable({helper:"clone",cursor:"pointer"})}var $container=$(this);$container.droppable({activeClass:"ui-state-highlight",drop:function(event,ui){$container.removeClass("ui-state-highlight");var currentOffset=$container.offset();var relX=event.pageX-currentOffset.left;var relY=event.pageY-currentOffset.top;var nodeType=$(ui.helper).attr("nodeType").toUpperCase();var cy=$container.cytoscape("get");var nodeMap={};var parentMap={};cy.nodes().forEach(function(node,i){var nodeBbox=node.renderedBoundingBox();if(relX<=nodeBbox.x2&&relX>=nodeBbox.x1&&(relY<=nodeBbox.y2&&relY>=nodeBbox.y1)&&node.data().type!="GENE"){if(node.children().length>0){parentMap[node.id()]=true}if(parentMap[node._private.data.parent]){delete nodeMap[node._private.data.parent]}nodeMap[node.id()]=node}});var parent=nodeMap[Object.keys(nodeMap)[0]];var nodeData={type:nodeType,name:"New "+$(ui.helper).attr("nodeType")};if(parent){if(parent.data().type=="FAMILY"||parent.data().type=="COMPLEX"){if(nodeType!="COMPARTMENT"&&nodeType!="PROCESS"){nodeData.parent=parent.id()}}else{nodeData.parent=parent.id()}}relX=relX/cy.zoom()+cy.extent().x1;relY=relY/cy.zoom()+cy.extent().y1;nodeAddClass.editorActionsManager.addNode(nodeData,{x:relX,y:relY})}})})}};if(functions[fn]){return functions[fn].apply(this,Array.prototype.slice.call(arguments,1))}else if(typeof fn=="object"||!fn){return functions.init.apply(this,arguments)}else{$.error("No such function `"+fn+"` for jquery.cytoscapenodeadd")}return $(this)};$.fn.cynodeadd=$.fn.cytoscapeNodeadd;$$("core","nodeadd",function(options){var cy=this;$(cy.container()).cytoscapeNodeadd(options)})};return NodeAdd}(window.$,window.cytoscape)},{}],182:[function(require,module,exports){var edgeHandleDefaults={preview:true,stackOrder:4,handleSize:10,handleColor:"#1abc9c",handleLineType:"ghost",handleLineWidth:1,handleNodes:"node",hoverDelay:1,cxt:false,enabled:false,toggleOffOnLeave:true,edgeType:function(sourceNode,targetNode){return"flat"},loopAllowed:function(node){return false},nodeLoopOffset:-50,nodeParams:function(sourceNode,targetNode){return{}},edgeParams:function(sourceNode,targetNode,i){return{}},start:function(sourceNode){var type=this.getGlobalEdgeType();cy.edgehandles("option","ghostEdgeType",type)},complete:function(sourceNode,targetNodes,addedEntities){cy.remove(addedEntities);window.editorActionsManager.addEdge({source:sourceNode.id(),target:targetNodes[0].id(),type:this.getGlobalEdgeType()})},stop:function(sourceNode){$(".edge-palette a").blur().removeClass("active");window.edgeAddingMode==-1;cy.edgehandles("disable")},getGlobalEdgeType:function(){var type="NONE";if(window.edgeAddingMode==1){type="ACTIVATES"}else if(window.edgeAddingMode==2){type="INHIBITS"}else if(window.edgeAddingMode==3){type="INDUCES"}else if(window.edgeAddingMode==4){type="REPRESSES"}else if(window.edgeAddingMode==5){type="BINDS"}return type}};module.exports=edgeHandleDefaults},{}],183:[function(require,module,exports){var GenomicDataOverlayManager=require("./GenomicDataOverlayManager.js");var SVGExporter=require("./SVGExporter.js");module.exports=function(){"use strict";var EditorActionsManager=function(isCollaborative,realtimeManager,cyInst){this.cy=cyInst;this.isCollaborative=isCollaborative;if(this.isCollaborative&&realtimeManager)this.realTimeManager=realtimeManager;this.defaultLayoutProperties={name:"cose-bilkent",nodeRepulsion:4500,nodeOverlap:10,idealEdgeLength:50,edgeElasticity:.45,nestingFactor:.1,gravity:.15,numIter:2500,tile:true,animate:"end",randomize:false,gravityRangeCompound:1.5,gravityCompound:1,gravityRange:1.5};this.FIT_CONSTANT=50;this.layoutProperties=_.clone(this.defaultLayoutProperties);this.observers=[];this.genomicDataOverlayManager=new GenomicDataOverlayManager;this.svgExporter=new SVGExporter;this.selecteNodeStack={};window.undoRedoManager=cy.undoRedo();window.undoRedoManager.action("changePositions",this.doChangePosition,this.undoChangePosition);window.undoRedoManager.action("changeName",this.doChangename,this.undoChangeName)};EditorActionsManager.prototype.doChangename=function(args){var currentName=args.node.data("name");var newArgs={node:args.node,newName:args.newName,oldName:currentName};args.node.data("name",args.newName);args.node.css("content",args.newName);return newArgs};EditorActionsManager.prototype.undoChangeName=function(args){var currentName=args.node.data("name");var newArgs={node:args.node,newName:args.oldName,oldName:currentName};args.node.data("name",args.oldName);args.node.css("content",args.oldName);return newArgs};EditorActionsManager.prototype.doChangePosition=function(movedNodes){var newMovedNodes=[];for(var i=0;i<movedNodes.length;i++){var currentNodePosition={x:movedNodes[i].node.position().x,y:movedNodes[i].node.position().y};newMovedNodes.push({node:movedNodes[i].node,oldPosition:currentNodePosition,nextPosition:movedNodes[i].nextPosition});movedNodes[i].node.position(movedNodes[i].nextPosition)}return newMovedNodes};EditorActionsManager.prototype.undoChangePosition=function(movedNodes){var newMovedNodes=[];for(var i=0;i<movedNodes.length;i++){var currentNodePosition={x:movedNodes[i].node.position().x,y:movedNodes[i].node.position().y};newMovedNodes.push({node:movedNodes[i].node,oldPosition:movedNodes[i].oldPosition,nextPosition:currentNodePosition});movedNodes[i].node.position(movedNodes[i].oldPosition)}return newMovedNodes};EditorActionsManager.prototype.postLayout=function(){if(this.isCollaborative){this.editorActionsManager.moveElements(cy.nodes());var newState={zoomLevel:cy.zoom(),panLevel:cy.pan()};this.editorActionsManager.updateGlobalOptions(newState)}};EditorActionsManager.prototype.getGeneSymbols=function(){var geneSymbols=[];this.cy.nodes().forEach(function(gene){geneSymbols.push(gene.data().name)});return geneSymbols};EditorActionsManager.prototype.pushSelectedNodeStack=function(ele){this.selecteNodeStack[ele.id()]=ele};EditorActionsManager.prototype.removeElementFromSelectedNodeStack=function(ele){var nodeID=ele.id();if(nodeID in this.selecteNodeStack)delete this.selecteNodeStack[ele.id()]};EditorActionsManager.prototype.clearSelectedNodeStack=function(){this.selecteNodeStack={}};EditorActionsManager.prototype.exportSVG=function(){return this.svgExporter.exportGraph(this.cy.nodes(),this.cy.edges())};EditorActionsManager.prototype.registerObserver=function(observer){this.observers.push(observer)};EditorActionsManager.prototype.notifyObservers=function(){for(var i in this.observers){var observer=this.observers[i];observer.notify()}};EditorActionsManager.prototype.registerGenomicDataObserver=function(observer){this.genomicDataOverlayManager.registerObserver(observer)};EditorActionsManager.prototype.updateGenomicDataVisibility=function(dataMap){if(this.isCollaborative){this.realTimeManager.clearGenomicVisData();this.realTimeManager.addGenomicVisibilityData("visMap",dataMap)}else{for(var _key in dataMap){this.genomicDataOverlayManager.updateGenomicDataVisibility(_key,dataMap[_key])}this.genomicDataOverlayManager.showGenomicData()}};EditorActionsManager.prototype.getGlobalOptions=function(){return{zoomLevel:cy.zoom(),panLevel:cy.pan()}};EditorActionsManager.prototype.changeGlobalOptions=function(globalOptions){cy.zoom(globalOptions.zoomLevel);cy.pan(globalOptions.panLevel)};EditorActionsManager.prototype.updateGlobalOptions=function(newOptions){if(this.isCollaborative)this.realTimeManager.updateGlobalOptions(newOptions)};EditorActionsManager.prototype.saveLayoutProperties=function(newLayoutProps){if(this.isCollaborative){this.realTimeManager.updateLayoutProperties(newLayoutProps)}else{this.layoutProperties=_.clone(newLayoutProps)}};EditorActionsManager.prototype.updateLayoutPropertiesCallback=function(newLayoutProps){this.layoutProperties=_.clone(newLayoutProps);this.notifyObservers()};EditorActionsManager.prototype.performLayout=function(){window.undoRedoManager.do("layout",{options:this.layoutProperties,eles:null,zoom:cy.zoom(),pan:cy.pan()})};EditorActionsManager.prototype.addNode=function(nodeData,posData){if(this.isCollaborative){this.addNewNodeToRealTime(nodeData,posData)}else{this.addNodetoCy(nodeData,posData)}};EditorActionsManager.prototype.addNodes=function(nodes){for(var i in nodes){this.addNode(nodes[i].data,nodes[i].position)}};EditorActionsManager.prototype.addNodesCy=function(nodes){var nodeArr=[];for(var i in nodes){var nodeData=nodes[i].data;var posData=nodes[i].position;var newNode={group:"nodes",data:nodeData};if(nodeData.parent===undefined){delete newNode.data.parent}if(posData){newNode.position={x:posData.x,y:posData.y}}nodeArr[i]=newNode}this.cy.add(nodeArr);this.cy.nodes().updateCompoundBounds()};EditorActionsManager.prototype.addNodetoCy=function(nodeData,posData){var newNode={group:"nodes",data:nodeData};if(nodeData.parent===undefined){delete newNode.data.parent}if(posData){newNode.position={x:posData.x,y:posData.y}}this.cy.nodes().updateCompoundBounds();window.undoRedoManager.do("add",newNode)};EditorActionsManager.prototype.realTimeNodeAddRemoveEventCallBack=function(event){var node=event.newValue;var nodeID=event.property;if(node===null){var cyEle=this.cy.$("#"+nodeID);this.removeElementCy(cyEle);this.cy.nodes().updateCompoundBounds()}else{this.addNewNodeLocally(node)}};EditorActionsManager.prototype.addNewNodeLocally=function(realtimeNode){var nodeID=this.realTimeManager.getCustomObjId(realtimeNode);var nodeData={id:nodeID,type:realtimeNode.type,name:realtimeNode.name,parent:realtimeNode.parent};if(realtimeNode.x!="undefined"&&realtimeNode.y!="undefined"){this.addNodetoCy(nodeData,{x:realtimeNode.x,y:realtimeNode.y})}else{this.addNodetoCy(nodeData)}this.cy.nodes().updateCompoundBounds()};EditorActionsManager.prototype.addNewNodeToRealTime=function(nodeData,posData){this.realTimeManager.addNewNode(nodeData,posData)};EditorActionsManager.prototype.addEdge=function(edgeData){if(this.isCollaborative){this.addNewEdgeRealTime(edgeData)}else{this.addNewEdgetoCy(edgeData)}};EditorActionsManager.prototype.addEdges=function(edges){for(var i in edges){this.addEdge(edges[i].data)}};EditorActionsManager.prototype.addEdgesCy=function(edges){var newEdges=[];for(var i in edges){var newEdge={group:"edges",data:edges[i].data};newEdges.push(newEdge)}cy.add(newEdges)};EditorActionsManager.prototype.addNewEdgeRealTime=function(edgeData){this.realTimeManager.addNewEdge(edgeData)};EditorActionsManager.prototype.addNewEdgetoCy=function(edgeData){var newEdge={group:"edges",data:edgeData};window.undoRedoManager.do("add",newEdge)};EditorActionsManager.prototype.realTimeEdgeAddRemoveEventCallBack=function(event){var edge=event.newValue;var edgeID=event.property;if(edge===null){var cyEle=this.cy.$("#"+edgeID);this.removeElementCy(cyEle)}else{this.addNewEdgeLocally(edge)}};EditorActionsManager.prototype.addNewElementsLocally=function(realTimeNodeArray,realTimeEdgeArray){var nodeList=[];var nodeMap={};for(var i in realTimeNodeArray){var realTimeNode=realTimeNodeArray[i];var nodeID=this.realTimeManager.getCustomObjId(realTimeNode);var nodeData={group:"nodes",data:{id:nodeID,type:realTimeNode.type,name:realTimeNode.name,parent:realTimeNode.parent}};if(nodeData.data.parent===undefined){delete nodeData.data.parent}if(realTimeNode.x&&realTimeNode.y){nodeData.position={x:realTimeNode.x,y:realTimeNode.y}}nodeMap[nodeID]=nodeData;nodeList.push(nodeData)}var edgeList=[];for(var i in realTimeEdgeArray){var edge=realTimeEdgeArray[i];var edgeID=this.realTimeManager.getCustomObjId(edge);if(!(edge.source in nodeMap&&edge.target in nodeMap))continue;var edgeData={group:"edges",data:{id:edgeID,type:edge.type,source:edge.source,target:edge.target}};edgeList.push(edgeData)}this.cy.add(nodeList);this.cy.add(edgeList);this.cy.nodes().updateCompoundBounds()};EditorActionsManager.prototype.addNewEdgeLocally=function(edge){var edgeID=this.realTimeManager.getCustomObjId(edge);var edgeData={id:edgeID,type:edge.type,source:edge.source,target:edge.target};this.addNewEdgetoCy(edgeData)};EditorActionsManager.prototype.removeElement=function(ele){if(this.isCollaborative){this.removeElementsFromRealTime(ele)}else{this.removeElementsCy(ele)}};EditorActionsManager.prototype.removeElementCy=function(ele){window.undoRedoManager.do("remove",ele)};EditorActionsManager.prototype.removeElementsCy=function(ele){window.undoRedoManager.do("remove",ele)};EditorActionsManager.prototype.removeElementsFromRealTime=function(eles){var self=this;eles.forEach(function(ele,i){self.realTimeManager.removeElement(ele.id())})};EditorActionsManager.prototype.removeElementFromRealTime=function(ele){this.realTimeManager.removeElement(ele.id())};EditorActionsManager.prototype.changeParents=function(eles,newParentId){if(this.isCollaborative){this.changeParentRealTime(eles,newParentId)}else{var parentData=newParentId?newParentId:null;var param={firstTime:true,parentData:parentData,nodes:eles,posDiffX:0,posDiffY:0};window.undoRedoManager.do("changeParent",param)}};EditorActionsManager.prototype.changeParentCy=function(eles,newParentId){var lockedNodes={};var self=this;function removeNodes(nodes){var removedEles=nodes.connectedEdges().remove();var children=nodes.children();if(children!=null&&children.length>0){children.forEach(function(childNode,i){lockedNodes[childNode.id()]=true});removedEles=removedEles.union(removeNodes(children))}removedEles=removedEles.union(nodes.remove());self.cy.nodes().updateCompoundBounds();return removedEles}var removedEles=removeNodes(eles);window.undoRedoManager.do("remove",removedEles);for(var i=0;i<removedEles.length;i++){var removedNode=removedEles[i];if(removedNode.isEdge()||lockedNodes[removedNode.id()]){continue}removedNode._private.data.parent=newParentId;if(removedNode._private.parent){delete removedNode._private.parent}}self.cy.add(removedEles);window.undoRedoManager.do("add",removedEles);self.cy.nodes().updateCompoundBounds()};EditorActionsManager.prototype.changeParentRealTime=function(eles,newParentId){var classRef=this;function getTopLevelParents(eles){var tpMostNodes=classRef.cy.collection();var parentMap={};eles.forEach(function(node,index){if(node.isParent())parentMap[node.id()]=node});eles.forEach(function(node,index){var nodeParent=node.parent();if(parentMap[nodeParent.id()]===undefined)tpMostNodes=tpMostNodes.union(node);
+
+});return tpMostNodes}var NodeObj=function(nodeObj){this.nodeRef=nodeObj;this.children=[]};var connectedEdges=eles.connectedEdges();function traverseNodes(eles,rootNodeObj){eles.forEach(function(ele,index){connectedEdges=connectedEdges.union(ele.connectedEdges());if(ele.isParent()){rootNodeObj.children.push(new NodeObj(ele));var lengthOfChildrenArray=rootNodeObj.children.length;traverseNodes(ele.children(),rootNodeObj.children[lengthOfChildrenArray-1])}else{rootNodeObj.children.push(new NodeObj(ele))}})}var topMostNodes=getTopLevelParents(eles);var rootNodeR=new NodeObj(null);traverseNodes(topMostNodes,rootNodeR);this.realTimeManager.changeParent(rootNodeR,newParentId,connectedEdges)};EditorActionsManager.prototype.moveElements=function(ele,position){var classRef=this;if(this.isCollaborative){ele.forEach(function(ele,index){classRef.realTimeManager.moveElement(ele)})}};EditorActionsManager.prototype.handleChangePositionByAlignment=function(movedNodeArr){window.undoRedoManager.do("changePositions",movedNodeArr)};EditorActionsManager.prototype.mergeGraph=function(nodes,edges){if(this.isCollaborative){this.realTimeManager.mergeGraph(nodes,edges)}else{this.mergeGraphCy(nodes,edges)}this.fitGraph()};EditorActionsManager.prototype.mergeGraphCy=function(nodes,edges){var nodesToBeAdded=[];var edgesToBeAdded=[];var nodeMap={};for(var index in nodes){var ele=nodes[index];nodeMap[ele.data.id]=ele;if(cy.filter('node[name = "'+ele.data.name+'"]').length<=0){delete ele.data.id;nodesToBeAdded.push(ele)}}cy.add(nodesToBeAdded);for(var index in edges){var ele=edges[index];var sourceNode=nodeMap[ele.data.source];var targetNode=nodeMap[ele.data.target];var cySourceNode=cy.nodes('[name="'+sourceNode.data.name+'"]');var cyTargetNode=cy.nodes('[name="'+targetNode.data.name+'"]');if(cySourceNode.length>0){ele.data.source=cySourceNode.id()}if(cyTargetNode.length>0){ele.data.target=cyTargetNode.id()}if(cyTargetNode.length<0&&cySourceNode.length<0){continue}var edgesBtw=cy.filter('edge[source = "'+cySourceNode.id()+'"][target = "'+cyTargetNode.id()+'"]');var isFound=false;edgesBtw.forEach(function(edge,i){if(edge.data().type==ele.data.type){isFound=true;return false}});if(!isFound){delete ele.data.id;edgesToBeAdded.push(ele)}}cy.add(edgesToBeAdded)};EditorActionsManager.prototype.fitGraph=function(){if(this.isCollaborative){cy.fit(this.FIT_CONSTANT);var newState={zoomLevel:cy.zoom(),panLevel:cy.pan()};this.updateGlobalOptions(newState)}else{cy.fit(this.FIT_CONSTANT)}};EditorActionsManager.prototype.loadFile=function(nodes,edges){if(this.isCollaborative){this.loadfileRealTime(nodes,edges)}else{this.loadFileCy(nodes,edges)}this.fitGraph()};EditorActionsManager.prototype.loadFileCy=function(nodes,edges){this.removeElementCy(cy.elements());this.addNodesCy(nodes);this.addEdgesCy(edges)};EditorActionsManager.prototype.loadfileRealTime=function(nodes,edges){this.realTimeManager.loadGraph(nodes,edges)};EditorActionsManager.prototype.removeAllElements=function(){if(this.isCollaborative){this.realTimeManager.removeAllElements()}else{cy.remove(cy.elements())}};EditorActionsManager.prototype.changeName=function(ele,newName){if(this.isCollaborative){this.realTimeManager.changeName(ele,newName)}else{this.changeNameCy(ele,newName)}};EditorActionsManager.prototype.changeNameCy=function(ele,newName){var currentName=ele.data("name");var args={node:ele,oldName:currentName,newName:newName};window.undoRedoManager.do("changeName",args)};EditorActionsManager.prototype.updateElementCallback=function(ele,id){var nodeID=id;var cyEle=this.cy.$("#"+nodeID);cyEle.position({x:ele.x,y:ele.y});this.changeNameCy(cyEle,ele.name)};EditorActionsManager.prototype.getGenomicDataSVG=function(node){return this.genomicDataOverlayManager.generateSVGForNode(node)};EditorActionsManager.prototype.removeGenomicData=function(){if(this.isCollaborative){this.realTimeManager.clearGenomicData();this.realTimeManager.clearGenomicVisData()}else{this.genomicDataOverlayManager.removeGenomicData();this.genomicDataOverlayManager.removeGenomicVisData();this.genomicDataOverlayManager.hideGenomicData();this.genomicDataOverlayManager.notifyObservers()}};EditorActionsManager.prototype.addGenomicData=function(genomicData){if(this.isCollaborative){this.removeGenomicData();var parsedGenomicData=this.genomicDataOverlayManager.prepareGenomicDataRealTime(genomicData);var genomicDataMap=parsedGenomicData.genomicDataMap;var visibilityMap=parsedGenomicData.visibilityMap;this.realTimeManager.addGenomicData("genomicData",genomicDataMap);this.realTimeManager.addGenomicVisibilityData("visMap",visibilityMap)}else{this.genomicDataOverlayManager.addGenomicDataLocally(genomicData)}};EditorActionsManager.prototype.addPortalGenomicData=function(genomicData){if(this.isCollaborative){this.genomicDataOverlayManager.addPortalGenomicData(genomicData);this.realTimeManager.addGenomicData("genomicData",this.genomicDataOverlayManager.genomicDataMap);this.realTimeManager.addGenomicVisibilityData("visMap",this.genomicDataOverlayManager.visibleGenomicDataMapByType)}else{this.genomicDataOverlayManager.addPortalGenomicData(genomicData)}};EditorActionsManager.prototype.realTimeGenomicDataHandler=function(event){var newData=event.newValue;var geneSymbol=event.property;if(newData){this.genomicDataOverlayManager.addGenomicData(newData)}else{this.genomicDataOverlayManager.removeGenomicData(geneSymbol)}};EditorActionsManager.prototype.realTimeGenomicDataVsibilityHandler=function(event){var data=event.newValue;if(data){this.genomicDataOverlayManager.addGenomicVisData(data)}else{this.genomicDataOverlayManager.removeGenomicVisData(data)}this.genomicDataOverlayManager.showGenomicData();this.genomicDataOverlayManager.notifyObservers()};return EditorActionsManager}()},{"./GenomicDataOverlayManager.js":185,"./SVGExporter.js":195}],184:[function(require,module,exports){var SaveLoadUtilities=require("./SaveLoadUtility.js");module.exports=function($){"use strict";function b64toBlob(b64Data,contentType,sliceSize){contentType=contentType||"";sliceSize=sliceSize||512;var byteCharacters=atob(b64Data);var byteArrays=[];for(var offset=0;offset<byteCharacters.length;offset+=sliceSize){var slice=byteCharacters.slice(offset,offset+sliceSize);var byteNumbers=new Array(slice.length);for(var i=0;i<slice.length;i++){byteNumbers[i]=slice.charCodeAt(i)}var byteArray=new Uint8Array(byteNumbers);byteArrays.push(byteArray)}var blob=new Blob(byteArrays,{type:contentType});return blob}function saveAsJPEG(){var graphData=cy.jpeg();var b64data=graphData.substr(graphData.indexOf(",")+1);var imageData=b64toBlob(b64data,"image/jpeg");var blob=new Blob([imageData]);saveAs(blob,"pathway.jpg")}function saveAsPNG(){var graphData=cy.png();var b64data=graphData.substr(graphData.indexOf(",")+1);var imageData=b64toBlob(b64data,"image/png");var blob=new Blob([imageData]);saveAs(blob,"pathway.png")}function saveGraph(){var pathwayData=getPathwayData();pathwayData.graphJSON=cy.json();var returnString=SaveLoadUtilities.exportGraph(pathwayData);var blob=new Blob([returnString],{type:"text/plain;charset=utf-8"});saveAs(blob,pathwayData.fileName)}function getPathwayData(){var pathwayData={fileName:$("#pName").val(),pathwayTitle:$("#pTitle").val(),pathwayDescription:$("#pDesc").val()};return pathwayData}function changePathwayDetails(pathwayData){window.appManager.pathwayDetailsView.updatePathwayProperties(pathwayData)}function sampleFileRequestHandler(){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var graphData=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(graphData.nodes,graphData.edges);changePathwayDetails({fileName:graphData.name,pathwayTitle:graphData.title,pathwayDescription:graphData.description});resetUndoStack()}};request.open("GET","/sampleGraph");request.send()}$("#saveGraphBtn").on("click",function(evt){saveGraph()});$("#loadGraphBtn").on("click",function(evt){$("#fileinput").attr("value","");$("#fileinput").trigger("click")});$("#fileinput").on("change",function(){var file=this.files[0];var formData=new FormData;formData.append("graphFile",file);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var graphData=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(graphData.nodes,graphData.edges);changePathwayDetails({fileName:file.name,pathwayTitle:graphData.title,pathwayDescription:graphData.description});resetUndoStack()}};request.open("POST","/loadGraph");request.send(formData);$("#fileinput").val(null)});$("#mergeInput").on("change",function(){var file=this.files[0];var formData=new FormData;formData.append("graphFile",file);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var graphData=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.mergeGraph(graphData.nodes,graphData.edges);resetUndoStack()}};request.open("POST","/loadGraph");request.send(formData);$("#mergeInput").val(null)});$("#pathwayDetailsBtn").on("click",function(evt){window.appManager.pathwayDetailsView.render();$("#pathwayDetailsDiv").modal("show")});$(".fileDropDown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="save"){saveGraph()}else if(dropdownLinkRole=="load"){$("#fileinput").trigger("click")}else if(dropdownLinkRole=="details"){$("#pathwayDetailsBtn").trigger("click")}else if(dropdownLinkRole=="sample"){sampleFileRequestHandler()}else if(dropdownLinkRole=="new"){window.editorActionsManager.removeAllElements();resetUndoStack()}else if(dropdownLinkRole=="merge"){$("#mergeInput").trigger("click")}else if(dropdownLinkRole=="jpeg"){saveAsJPEG()}else if(dropdownLinkRole=="png"){saveAsPNG()}else if(dropdownLinkRole=="svg"){var returnString=window.editorActionsManager.exportSVG();var fileName="pathway.svg";var blob=new Blob([returnString],{type:"text/plain;charset=utf-8"});saveAs(blob,fileName)}});$("#fileinput").on("change",function(){var file=this.files[0];var formData=new FormData;formData.append("graphFile",file);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var graphData=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(graphData.nodes,graphData.edges);changePathwayDetails({fileName:file.name,pathwayTitle:graphData.title,pathwayDescription:graphData.description})}};request.open("POST","/loadGraph");request.send(formData);$("#fileinput").val(null)});function resetUndoStack(){window.undoRedoManager.reset()}}(window.$)},{"./SaveLoadUtility.js":196}],185:[function(require,module,exports){module.exports=function(){var GenomicDataOverlayManager=function(){this.cancerTypes=[];this.genomicDataMap={};this.visibleGenomicDataMapByType={};this.DEFAULT_VISIBLE_GENOMIC_DATA_COUNT=3;this.observers=[]};GenomicDataOverlayManager.prototype.addGenomicDataLocally=function(genomicData){this.parseGenomicData(genomicData);this.showGenomicData();this.notifyObservers()};GenomicDataOverlayManager.prototype.addPortalGenomicData=function(genomicData){this.genomicDataMap=this.genomicDataMap?this.genomicDataMap:{};this.cancerTypes=this.cancerTypes?this.cancerTypes:[];this.visibleGenomicDataMapByType=this.visibleGenomicDataMapByType?this.visibleGenomicDataMapByType:{};for(var cancerProfile in genomicData){if(cancerProfile in this.cancerTypes)continue;this.cancerTypes.push(cancerProfile);this.visibleGenomicDataMapByType[cancerProfile]=true;for(var geneSymbol in genomicData[cancerProfile]){if(!this.genomicDataMap[geneSymbol])this.genomicDataMap[geneSymbol]={};this.genomicDataMap[geneSymbol][cancerProfile]=String(genomicData[cancerProfile][geneSymbol].toFixed(2))}}this.showGenomicData();this.notifyObservers()};GenomicDataOverlayManager.prototype.removeGenomicData=function(){this.genomicDataMap={}};GenomicDataOverlayManager.prototype.addGenomicData=function(data){this.genomicDataMap=data};GenomicDataOverlayManager.prototype.removeGenomicVisData=function(){this.visibleGenomicDataMapByType={}};GenomicDataOverlayManager.prototype.addGenomicVisData=function(data){this.visibleGenomicDataMapByType=data};GenomicDataOverlayManager.prototype.prepareGenomicDataRealTime=function(genomicData){var genomicDataMap={};var cancerTypes=[];var visibleGenomicDataMapByType={};var lines=genomicData.split("\n");var metaLineColumns=lines[0].split("	");for(var i=1;i<metaLineColumns.length;i++){cancerTypes.push(metaLineColumns[i]);if(i-1<this.DEFAULT_VISIBLE_GENOMIC_DATA_COUNT)visibleGenomicDataMapByType[cancerTypes[i-1]]=true;else visibleGenomicDataMapByType[cancerTypes[i-1]]=false}for(var i=1;i<lines.length;i++){if(lines[i].length==0)break;var lineContent=lines[i].split("	");var geneSymbol=lineContent[0];if(!(geneSymbol in genomicDataMap))genomicDataMap[geneSymbol]={};for(var j=1;j<lineContent.length;j++){genomicDataMap[geneSymbol][cancerTypes[j-1]]=lineContent[j]}}var returnObj={genomicDataMap:genomicDataMap,visibilityMap:visibleGenomicDataMapByType};return returnObj};GenomicDataOverlayManager.prototype.updateGenomicDataVisibility=function(_key,isVisible){if(_key in this.visibleGenomicDataMapByType)this.visibleGenomicDataMapByType[_key]=isVisible};GenomicDataOverlayManager.prototype.hideGenomicData=function(){cy.style().selector('node[type="GENE"]').style("text-margin-y",0).style("width",function(ele){return 150}).style("background-image",function(ele){var dataURI="data:image/svg+xml,";return dataURI}).update()};GenomicDataOverlayManager.prototype.countVisibleGenomicDataByType=function(){var genomicDataBoxCount=0;for(var cancerType in this.visibleGenomicDataMapByType){if(this.visibleGenomicDataMapByType[cancerType])genomicDataBoxCount++}return genomicDataBoxCount};GenomicDataOverlayManager.prototype.generateSVGForNode=function(ele){var genomicDataBoxCount=this.countVisibleGenomicDataByType();var dataURI="data:image/svg+xml,";var svgNameSpace="http://www.w3.org/2000/svg";var nodeLabel=ele.data("name");if(!(nodeLabel in this.genomicDataMap))return dataURI;var eleBBox=ele.boundingBox();var reqWidth=getRequiredWidthForGenomicData(genomicDataBoxCount);console.log(" reqW"+reqWidth);var overlayRecBoxW=reqWidth-10;var overlayRecBoxH=25;var svg=document.createElementNS(svgNameSpace,"svg");svg.setAttribute("width",reqWidth);svg.setAttribute("height",eleBBox.h);svg.setAttribute("xmlns",svgNameSpace);var overLayRectBBox={w:overlayRecBoxW,h:overlayRecBoxH,x:reqWidth/2-overlayRecBoxW/2,y:eleBBox.h/2+overlayRecBoxH/2-18};var genomicFrequencyData=this.genomicDataMap[nodeLabel];var maxGenomicDataBoxCount=genomicDataBoxCount;var genomicBoxCounter=0;for(var cancerType in genomicFrequencyData){if(!this.visibleGenomicDataMapByType[cancerType])continue;genomicDataRectangleGenerator(overLayRectBBox.x+genomicBoxCounter*overLayRectBBox.w/maxGenomicDataBoxCount,overLayRectBBox.y,overLayRectBBox.w/maxGenomicDataBoxCount,overLayRectBBox.h,genomicFrequencyData[cancerType],svg);genomicBoxCounter++}function genomicDataRectangleGenerator(x,y,w,h,percent,parentSVG){var isNegativePercent=percent<0;var _percent=Math.abs(percent);_percent=_percent<.5?2:Math.round(_percent);_percent=_percent==1?2:_percent;var percentColor=255-(-7.118+53.9765*Math.log(_percent));var colorString="";if(percent==0){colorString="rgb(255,255,255)"}else if(isNegativePercent){colorString="rgb("+Math.round(percentColor)+","+Math.round(percentColor)+",255)";percent=percent.substring(1)}else colorString="rgb(255,"+Math.round(percentColor)+","+Math.round(percentColor)+")";var overlayRect=document.createElementNS(svgNameSpace,"rect");overlayRect.setAttribute("x",x);overlayRect.setAttribute("y",y);overlayRect.setAttribute("width",w);overlayRect.setAttribute("height",h);overlayRect.setAttribute("style","stroke-width:1;stroke:rgb(0,0,0);opacity:1;fill:"+colorString+";");var textPercent=percent<.5&&percent>0?"<0.5":Math.round(percent);var text=textPercent+"%";var fontSize=14;var textLength=text.length;var xOffset=w/2-textLength*4;var yOffset=fontSize/3;var svgText=document.createElementNS(svgNameSpace,"text");svgText.setAttribute("x",x+xOffset);svgText.setAttribute("y",y+h/2+yOffset);svgText.setAttribute("font-family","Arial");svgText.setAttribute("font-size",fontSize);svgText.innerHTML=text;parentSVG.appendChild(overlayRect);parentSVG.appendChild(svgText)}return svg};function getRequiredWidthForGenomicData(genomicDataBoxCount){var term=genomicDataBoxCount>3?genomicDataBoxCount-3:0;return 150+term*35}GenomicDataOverlayManager.prototype.showGenomicData=function(){var self=this;var genomicDataBoxCount=this.countVisibleGenomicDataByType();if(genomicDataBoxCount<1){this.hideGenomicData();return}cy.style().selector('node[type="GENE"]').style("width",function(ele){return getRequiredWidthForGenomicData(genomicDataBoxCount)}).style("text-margin-y",function(ele){var nodeLabel=ele.data("name");if(!(nodeLabel in self.genomicDataMap))return 0;return-15}).style("background-image",function(ele){var dataURI="data:image/svg+xml,";return dataURI+self.generateSVGForNode(ele).outerHTML}).update()};GenomicDataOverlayManager.prototype.parseGenomicData=function(genomicData){this.genomicDataMap={};this.cancerTypes=[];this.visibleGenomicDataMapByType={};var lines=genomicData.split("\n");var metaLineColumns=lines[0].split("	");for(var i=1;i<metaLineColumns.length;i++){this.cancerTypes.push(metaLineColumns[i]);if(i-1<this.DEFAULT_VISIBLE_GENOMIC_DATA_COUNT)this.visibleGenomicDataMapByType[this.cancerTypes[i-1]]=true;else this.visibleGenomicDataMapByType[this.cancerTypes[i-1]]=false}for(var i=1;i<lines.length;i++){if(lines[i].length==0)break;var lineContent=lines[i].split("	");var geneSymbol=lineContent[0];if(!(geneSymbol in this.genomicDataMap))this.genomicDataMap[geneSymbol]={};for(var j=1;j<lineContent.length;j++){this.genomicDataMap[geneSymbol][this.cancerTypes[j-1]]=lineContent[j]}}};GenomicDataOverlayManager.prototype.registerObserver=function(observer){this.observers.push(observer)};GenomicDataOverlayManager.prototype.notifyObservers=function(){for(var i in this.observers){var observer=this.observers[i];observer.notify()}};return GenomicDataOverlayManager}()},{}],186:[function(require,module,exports){module.exports=function($){$("#genomicDataInput").on("change",function(){var file=this.files[0];var formData=new FormData;formData.append("graphFile",file);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){window.editorActionsManager.addGenomicData(request.responseText)}};request.open("POST","/loadGraph");request.send(formData);$("#genomicDataInput").val(null)});$(".dataDropdown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="loadGenomic"){$("#genomicDataInput").trigger("click")}else if(dropdownLinkRole=="loadPortal"){window.appManager.portalAccessView.render()}else if(dropdownLinkRole=="dataViewSettings"){$("#genomicDataExplorerDiv").modal("show")}else if(dropdownLinkRole=="loadSampleGenomicData"){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){window.editorActionsManager.addGenomicData(request.responseText)}};request.open("GET","/sampleGenomicData");request.send()}else if(dropdownLinkRole=="removeGenomicData"){window.editorActionsManager.removeGenomicData()}})}(window.$)},{}],187:[function(require,module,exports){module.exports=function(){var styleSheet=[{selector:"node",style:{label:"data(name)","text-valign":"center","text-halign":"center",color:"#1e2829",width:150,height:52,"background-color":"#fff","background-opacity":.5,shape:function(ele){return parentNodeShapeFunc(ele)},"border-width":function(ele){return borderWidthFunction(ele)},"border-color":function(ele){return nodeBorderColorFunction(ele)},"font-size":14}},{selector:"node:parent",style:{shape:function(ele){return parentNodeShapeFunc(ele)},"text-valign":function(ele){return"bottom"},"text-margin-y":2,"padding-left":function(ele){return compoundPaddingFunction(ele)},"padding-right":function(ele){return compoundPaddingFunction(ele)},"padding-bottom":function(ele){return compoundPaddingFunction(ele)},"padding-top":function(ele){return compoundPaddingFunction(ele)},"background-opacity":.5,"border-width":function(ele){return parentBorderWidthFunction(ele)},"border-color":function(ele){return nodeBorderColorFunction(ele)},"background-color":function(ele){return nodeBackgroundColorFunction(ele)}}},{selector:"edge",style:{"curve-style":"bezier","target-arrow-shape":function(ele){return edgeTargetArrowTypeHandler(ele)},width:1,"line-color":function(ele){return edgeColorHandler(ele)},"target-arrow-color":function(ele){return edgeColorHandler(ele)},"line-style":function(ele){return edgeLineTypeHandler(ele)},opacity:1}},{selector:":selected",style:{"shadow-color":"#f1c40f","shadow-opacity":1}},{selector:".edgehandles-hover",css:{"background-color":"#1abc9c"}},{selector:".edgehandles-source",css:{"border-width":2,"border-color":"#1abc9c"}},{selector:".edgehandles-target",css:{"border-width":2,"border-color":"#1abc9c"}},{selector:".edgehandles-preview, .edgehandles-ghost-edge",css:{"line-color":"#1abc9c","target-arrow-color":"#1abc9c","source-arrow-color":"#1abc9c"}}];var compoundPaddingFunction=function(ele){switch(ele._private.data["type"]){case"FAMILY":return 5;break;case"COMPLEX":return"5";break;case"COMPARTMENT":return 10;break;case"PROCESS":return 10;break;default:return 5;break}};var contentFunction=function(ele){if(ele._private.data.name){return ele._private.data.name}return"newNode"};var vTextPositionFunction=function(ele){switch(ele._private.data["type"]){case"GENE":return"center";break;case"FAMILY":return"top";break;case"COMPLEX":return"top";break;case"COMPARTMENT":return"top";break;default:return"center";break}};var borderWidthFunction=function(ele){switch(ele._private.data["type"]){case"GENE":return.5;break;case"PROCESS":return 0;break;case"FAMILY":return 1;break;case"COMPARTMENT":return 2;break;default:return.5;break}};var parentBorderWidthFunction=function(ele){switch(ele._private.data["type"]){case"GENE":return.5;break;case"PROCESS":return 0;break;case"FAMILY":return 1;break;case"COMPLEX":return.5;break;case"COMPARTMENT":return 2;break;default:return.5;break}};var parentNodeShapeFunc=function(ele){switch(ele._private.data["type"]){case"GENE":return"roundrectangle";break;case"PROCESS":return"roundrectangle";break;case"FAMILY":return"rectangle";break;case"COMPARTMENT":return"roundrectangle";break;case"COMPLEX":return"rectangle";break;default:return"roundrectangle";break}};var nodeBackgroundColorFunction=function(ele){return"#fff"};var nodeBorderColorFunction=function(ele){switch(ele._private.data["type"]){case"GENE":return"#000000";break;case"FAMILY":return"#CCCCCC";break;case"COMPLEX":return"#000000";break;case"COMPARTMENT":return"#000000";break;default:return"#000000";break}};var edgeColorHandler=function(ele){return"#1b1b1b"};var edgeTargetArrowTypeHandler=function(ele){switch(ele._private.data["type"]){case"ACTIVATES":return"triangle";break;case"INHIBITS":return"tee";break;case"INDUCES":return"triangle";break;case"REPRESSES":return"tee";break;case"BINDS":return"none";break;default:return"none";break}};var edgeLineTypeHandler=function(ele){switch(ele._private.data["type"]){case"ACTIVATES":return"solid";break;case"INHIBITS":return"solid";break;case"INDUCES":return"dashed";break;case"REPRESSES":return"dashed";break;case"BINDS":return"solid";break;default:return"solid";break}};return styleSheet}()},{}],188:[function(require,module,exports){module.exports=function(){var GraphUtilities=function(){};GraphUtilities.prototype.createGraphHierarchy=function(nodes){var tree=[];var mappedArr={};for(var i=0,len=nodes.length;i<len;i++){var arrElem=nodes[i];mappedArr[arrElem.id()]=arrElem;mappedArr[arrElem.id()].childNodes=[]}for(var id in mappedArr){var mappedElem=mappedArr[id];if(mappedElem.parent().length>0){mappedArr[mappedElem.parent().id()].childNodes.push(mappedElem)}else{tree.push(mappedElem)}}return tree};GraphUtilities.prototype.createGraphHierarchyRealTime=function(nodes){var tree=[];var mappedArr={};for(var i=0,len=nodes.length;i<len;i++){var arrElem=nodes[i];mappedArr[arrElem.data.id]=arrElem;mappedArr[arrElem.data.id].children=[]}for(var id in mappedArr){var mappedElem=mappedArr[id];if(mappedElem.data.parent){mappedArr[mappedElem.data.parent].children.push(mappedElem)}else{tree.push(mappedElem)}}return tree};window.GraphUtilities=new GraphUtilities}()},{}],189:[function(require,module,exports){module.exports=function($){function NotificationFactory(){}function mapTypeToCSSStyle(type){if(type==="success")return"pathwayMapper-success";else if(type==="fail")return"pathwayMapper-fail"}NotificationFactory.prototype.createNotification=function(message,type){var mappedCSSClass=mapTypeToCSSStyle(type);$.notify({icon:"glyphicon glyphicon-ok",message:message},{element:"body",position:null,type:mappedCSSClass,allow_dismiss:true,newest_on_top:false,showProgressbar:false,placement:{from:"bottom",align:"right"},delay:5e3,offset:20,spacing:10,z_index:1031,mouse_over:null,animate:{enter:"animated fadeInUp",exit:"animated fadeOut"}})};return new NotificationFactory}(window.$)},{}],190:[function(require,module,exports){module.exports=function(){"use strict";$(".edge-palette a").click(function(event){event.preventDefault();if($(event.target).hasClass("active")){cy.edgehandles("disable");cy.edgehandles("drawoff");$(".edge-palette a").blur().removeClass("active")}else{$(".edge-palette a").blur().removeClass("active");$(event.target).toggleClass("active");window.edgeAddingMode=$(event.target).attr("edgeTypeIndex");cy.edgehandles("enable")}});$(".editDropDown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="addGene"){var clickedNodeType=$(event.target).text();var nodeData={type:clickedNodeType.toUpperCase(),name:"New "+clickedNodeType};var posData={x:cy.width()/2,y:cy.height()/2};window.editorActionsManager.addNode(nodeData,posData)}else if(dropdownLinkRole=="addEdge"){var edgeTypeIndex=$(event.target).attr("edgeTypeIndex");$(".edge-palette a").blur().removeClass("active");$('.edge-palette a[edgeTypeIndex="'+edgeTypeIndex+'"]').addClass("active");window.edgeAddingMode=edgeTypeIndex;cy.edgehandles("enable")}else if(dropdownLinkRole=="deleteSelected"){var selectedEles=cy.elements(":selected");window.editorActionsManager.removeElement(selectedEles)}else if(dropdownLinkRole=="undo"){window.undoRedoManager.undo()}else if(dropdownLinkRole=="redo"){window.undoRedoManager.redo()}});$(".layoutDropDown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="perform_layout"){window.editorActionsManager.performLayout()}else if(dropdownLinkRole=="layout_properties"){$("#layoutPropertiesDiv").modal("show")}});$(".aboutDropDown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="about"){$("#aboutModal").modal("show")}else if(dropdownLinkRole=="edge_legend"){$("#edge_legend_modal").modal("show")}else if(dropdownLinkRole=="node_legend"){$("#node_legend_modal").modal("show")}else if(dropdownLinkRole=="help"){$("#quickHelpModal").modal("show")}})}()},{}],191:[function(require,module,exports){var panzoomOptions={zoomFactor:.05,zoomDelay:45,minZoom:.1,maxZoom:10,fitPadding:50,panSpeed:10,panDistance:10,panDragAreaSize:75,panMinPercentSpeed:.25,panInactiveArea:8,panIndicatorMinOpacity:.5,zoomOnly:false,sliderHandleIcon:"fa fa-minus",zoomInIcon:"fa fa-plus",zoomOutIcon:"fa fa-minus",resetIcon:"fa fa-expand"};module.exports=panzoomOptions},{}],192:[function(require,module,exports){var BackboneView=require("./BackboneViews/BioGeneView.js");module.exports=function($){"use strict";var QtipManager=function(cy){this.cy=cy};QtipManager.prototype.generateQtipContentHTML=function(ele){var self=this;var nodeData=ele.data();var textInput=$('<div class="col-xs-8 inputCol"><input type="text" class="form-control" nodeid="'+ele.id()+'" value="'+nodeData.name+'"></div>');textInput.change(function(){var nodeID=$(this).find("input").attr("nodeid");var cyNode=self.cy.$("#"+nodeID)[0];var newName=$(this).find("input").val();window.editorActionsManager.changeName(cyNode,newName)});var wrapper=$("<div></div>");var row=$('<div class="row">                 <div class="col-xs-4 qtipLabel">Name:</div>              </div>');row.append(textInput);wrapper.append(row);if(ele.data().type==="GENE"){var entrezGeneButton=$('<div class="row centerText geneDetails"><button nodeid="'+ele.id()+'" type="button" class="btn btn-default">Entrez Gene</button></div>');entrezGeneButton.find("button").on("click",function(event){event.preventDefault();var nodeID=$(this).attr("nodeid");var nodeSymbol=self.cy.$("#"+nodeID)[0]._private.data["name"];var parent=$(this).parent();parent.empty().append('<i class="fa fa-circle-o-notch fa-spin fa-3x fa-fw"></i>');var formData=new FormData;formData.append("query",nodeSymbol);var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE){if(request.status===200){var jsonData=JSON.parse(request.responseText);if(jsonData.count>0){var backboneView=new BackboneView({model:jsonData.geneInfo[0]}).render().html();parent.empty().append(backboneView)}else{parent.empty().append("There is no extra information for this gene")}}else{parent.empty().append("An error occured while retrieving the data")}}};request.open("POST","/getBioGeneData");request.send(formData)});wrapper.append(entrezGeneButton)}return wrapper};QtipManager.prototype.addQtipToElements=function(eles){var self=this;eles.forEach(function(node,i){var qTipOpts={content:{text:function(){return self.generateQtipContentHTML(this)},title:function(){return capitalizeFirstLetter(node.data().type.toLowerCase())+" Details"}},position:{my:"top center",at:"bottom center"},style:{classes:"qtip-tipsy qtip-rounded",width:400}};node.qtip(qTipOpts)})};function capitalizeFirstLetter(string){return string.charAt(0).toUpperCase()+string.slice(1)}return QtipManager}(window.$)},{"./BackboneViews/BioGeneView.js":173}],193:[function(require,module,exports){module.exports=function(){"use strict";var RealTimeManager=function(postFileLoadCallback){this.clientId="122039910543-b7u74aijsqne9iv5rk2tgm3529ped4d0.apps.googleusercontent.com";this.NODEMAP_NAME="nodes";this.EDGEMAP_NAME="edges";this.LAYOUT_PROPS_NAME="layoutProperties";this.GLOBAL_OPTS_NAME="globalOptions";this.GENOMIC_DATA_MAP_NAME="genomicDataMap";this.VISIBLE_GENOMIC_DATA_MAP_NAME="visibleGenomicDataMapByType";this.realtimeUtils=new utils.RealtimeUtils({clientId:this.clientId});this.postFileLoad=postFileLoadCallback};RealTimeManager.prototype.authorize=function(callbackFunction,isModal){this.realtimeUtils.authorize(function(response){callbackFunction(response)},isModal)};RealTimeManager.prototype.initRealTimeAPI=function(){var id=this.realtimeUtils.getParam("id");this.registerTypes();var self=this;var initFileCallback=function(model){self.onFileInitialize(model)};var loadFileCallback=function(model){self.onFileLoaded(model)};if(id){this.realtimeUtils.load(id.replace("/",""),loadFileCallback,initFileCallback)}else{this.realtimeUtils.createAppFile("New Graph",function(createResponse){var result=createResponse.result;window.history.pushState(null,null,"?id="+result.id);self.realtimeUtils.load(result.id,loadFileCallback,initFileCallback)})}};RealTimeManager.prototype.onFileInitialize=function(model){var root=model.getRoot();var nodeMap=model.createMap();var edgeMap=model.createMap();var layoutProperties=model.create(LayoutPropertiesR,window.editorActionsManager.layoutProperties);
+
+var globalOptions=model.create(GlobalOptionsR,window.editorActionsManager.getGlobalOptions());var genomicDataMap=model.createMap();var genomicDataVisibilityMap=model.createMap();root.set(this.NODEMAP_NAME,nodeMap);root.set(this.EDGEMAP_NAME,edgeMap);root.set(this.LAYOUT_PROPS_NAME,layoutProperties);root.set(this.GLOBAL_OPTS_NAME,globalOptions);root.set(this.GENOMIC_DATA_MAP_NAME,genomicDataMap);root.set(this.VISIBLE_GENOMIC_DATA_MAP_NAME,genomicDataVisibilityMap)};RealTimeManager.prototype.onFileLoaded=function(doc){var model=doc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var edgeMap=root.get(this.EDGEMAP_NAME);var realTimeLayoutProperties=root.get(this.LAYOUT_PROPS_NAME);var globalOptions=root.get(this.GLOBAL_OPTS_NAME);var genomicDataMap=root.get(this.GENOMIC_DATA_MAP_NAME);var visDataMap=root.get(this.VISIBLE_GENOMIC_DATA_MAP_NAME);var nodeMapEntries=nodeMap.values();var edgeMapEntries=edgeMap.values();window.editorActionsManager.addNewElementsLocally(nodeMapEntries,edgeMapEntries);window.editorActionsManager.updateLayoutPropertiesCallback(realTimeLayoutProperties);window.editorActionsManager.changeGlobalOptions(globalOptions);window.editorActionsManager.genomicDataOverlayManager.genomicDataMap=genomicDataMap.get("genomicData");window.editorActionsManager.genomicDataOverlayManager.visibleGenomicDataMapByType=visDataMap.get("visMap");window.editorActionsManager.genomicDataOverlayManager.showGenomicData();window.editorActionsManager.genomicDataOverlayManager.notifyObservers();cy.fit(50);this.realTimeDoc=doc;var nodeAddRemoveHandler=function(event){window.editorActionsManager.realTimeNodeAddRemoveEventCallBack(event)};var edgeAddRemoveHandler=function(event){window.editorActionsManager.realTimeEdgeAddRemoveEventCallBack(event)};var genomicDataAddRemoveHandler=function(event){window.editorActionsManager.realTimeGenomicDataHandler(event)};var genomicDataVisibilityChangeHandler=function(event){window.editorActionsManager.realTimeGenomicDataVsibilityHandler(event)};root.get(this.NODEMAP_NAME).addEventListener(gapi.drive.realtime.EventType.VALUE_CHANGED,nodeAddRemoveHandler);root.get(this.EDGEMAP_NAME).addEventListener(gapi.drive.realtime.EventType.VALUE_CHANGED,edgeAddRemoveHandler);root.get(this.GENOMIC_DATA_MAP_NAME).addEventListener(gapi.drive.realtime.EventType.VALUE_CHANGED,genomicDataAddRemoveHandler);root.get(this.VISIBLE_GENOMIC_DATA_MAP_NAME).addEventListener(gapi.drive.realtime.EventType.VALUE_CHANGED,genomicDataVisibilityChangeHandler);this.postFileLoad()};RealTimeManager.prototype.clearGenomicData=function(){var model=this.realTimeDoc.getModel();var root=model.getRoot();var genomicMap=root.get(this.GENOMIC_DATA_MAP_NAME);var genomicMapKeys=genomicMap.keys();model.beginCompoundOperation();for(var i in genomicMapKeys){genomicMap.delete(genomicMapKeys[i])}model.endCompoundOperation()};RealTimeManager.prototype.clearGenomicVisData=function(){var model=this.realTimeDoc.getModel();var root=model.getRoot();var map=root.get(this.VISIBLE_GENOMIC_DATA_MAP_NAME);var mapKeys=map.keys();model.beginCompoundOperation();for(var i in mapKeys){map.delete(mapKeys[i])}model.endCompoundOperation()};RealTimeManager.prototype.addGenomicData=function(_key,geneData){var model=this.realTimeDoc.getModel();var root=model.getRoot();var genomicMap=root.get(this.GENOMIC_DATA_MAP_NAME);genomicMap.set(_key,geneData)};RealTimeManager.prototype.addGenomicVisibilityData=function(cancerType,isVisible){var model=this.realTimeDoc.getModel();var root=model.getRoot();var map=root.get(this.VISIBLE_GENOMIC_DATA_MAP_NAME);map.set(cancerType,isVisible)};RealTimeManager.prototype.addNewNode=function(nodeData,posData){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var newNode=model.create(NodeR,{name:nodeData.name,type:nodeData.type,parent:nodeData.parent});if(posData){newNode.x=posData.x;newNode.y=posData.y}var realTimeGeneratedID=this.getCustomObjId(newNode);nodeMap.set(realTimeGeneratedID,newNode)};RealTimeManager.prototype.addNewEdge=function(edgeData){var model=this.realTimeDoc.getModel();var root=model.getRoot();var edgeMap=root.get(this.EDGEMAP_NAME);var newEdge=model.create(EdgeR,{type:edgeData.type,source:edgeData.source,target:edgeData.target});var realTimeGeneratedID=this.getCustomObjId(newEdge);edgeMap.set(realTimeGeneratedID,newEdge)};RealTimeManager.prototype.removeElement=function(elementID){var model=this.realTimeDoc.getModel();var root=model.getRoot();var edgeMap=root.get(this.EDGEMAP_NAME);var nodeMap=root.get(this.NODEMAP_NAME);if(nodeMap.has(elementID)){nodeMap.delete(elementID)}else if(edgeMap.has(elementID)){edgeMap.delete(elementID)}else{throw new Error("Element does not exists in Real Time")}};RealTimeManager.prototype.moveElement=function(ele){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var elementID=ele.id();var newPos=ele.position();if(nodeMap.has(elementID)){var tmpNode=nodeMap.get(elementID);model.beginCompoundOperation();tmpNode.x=newPos.x;tmpNode.y=newPos.y;model.endCompoundOperation()}else{throw new Error("Element does not exists in nodes !!! ")}};RealTimeManager.prototype.changeName=function(ele,newName){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var elementID=ele.id();if(nodeMap.has(elementID)){var tmpNode=nodeMap.get(elementID);model.beginCompoundOperation();tmpNode.name=newName;model.endCompoundOperation()}else{throw new Error("Element does not exists in nodes !!! ")}};RealTimeManager.prototype.changeParent=function(rootNode,newParentId,connectedEdges){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var nodeLookupTable={};var self=this;function traverseFromRoot(rootNode,parId){var refNode=rootNode.nodeRef;var children=rootNode.children;var newParentId=parId;if(refNode){var refNodeId=refNode.id();var nodeData=refNode.data();var posData=refNode.position();var newNodeData={name:nodeData.name,type:nodeData.type,x:posData.x,y:posData.y};if(parId){newNodeData.parent=parId}self.removeElement(refNodeId);var newNode=model.create(NodeR,newNodeData);var newNodeId=self.getCustomObjId(newNode);nodeMap.set(newNodeId,newNode);newParentId=newNodeId;nodeLookupTable[refNodeId]=newNodeId}for(var i in children){var childNode=children[i];traverseFromRoot(childNode,newParentId)}}traverseFromRoot(rootNode,newParentId);connectedEdges.forEach(function(edge,index){var edgeData=edge.data();self.removeElement(edge.id());var newSource=nodeLookupTable[edgeData.source];var newTarget=nodeLookupTable[edgeData.target];if(newSource){edgeData.source=newSource}if(newTarget){edgeData.target=newTarget}self.addNewEdge(edgeData)})};RealTimeManager.prototype.removeAllElements=function(){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var edgeMap=root.get(this.EDGEMAP_NAME);var nodeMapKeys=nodeMap.keys();var edgeMapKeys=edgeMap.keys();for(var index in nodeMapKeys){this.removeElement(nodeMapKeys[index])}for(var index in edgeMapKeys){this.removeElement(edgeMapKeys[index])}};RealTimeManager.prototype.loadGraph=function(nodes,edges){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var edgeMap=root.get(this.EDGEMAP_NAME);this.removeAllElements();var that=this;var oldIdNewIdMap={};function traverseTree(node,newParentId){node.data.x=node.position.x;node.data.y=node.position.y;if(newParentId){var parent=node.data.parent;if(parent){node.data.parent=newParentId}}var newNode=model.create(NodeR,node.data);var newNodeId=that.getCustomObjId(newNode);oldIdNewIdMap[node.data.id]=newNodeId;nodeMap.set(newNodeId,newNode);if(node.children.length>0){for(var i in node.children){var tmpNode=node.children[i];traverseTree(tmpNode,newNodeId)}}}var tree=window.GraphUtilities.createGraphHierarchyRealTime(nodes);for(var i in tree){var rootLevelNode=tree[i];traverseTree(rootLevelNode)}for(var i in edges){var edge=edges[i];edge.data.source=oldIdNewIdMap[edge.data.source];edge.data.target=oldIdNewIdMap[edge.data.target];var newEdge=model.create(EdgeR,edge.data);var newEdgeID=this.getCustomObjId(newEdge);edgeMap.set(newEdgeID,newEdge)}};RealTimeManager.prototype.mergeGraph=function(nodes,edges){var model=this.realTimeDoc.getModel();var root=model.getRoot();var nodeMap=root.get(this.NODEMAP_NAME);var edgeMap=root.get(this.EDGEMAP_NAME);var realTimeNodeMap=nodeMap.items();var realTimeNodeLookupTable={};var realTimeNodeNameLookupTable={};var oldIdNewIdMap={};var that=this;for(var i in realTimeNodeMap){var nodeMapItem=realTimeNodeMap[i];realTimeNodeLookupTable[nodeMapItem[0]]=nodeMapItem[1];realTimeNodeNameLookupTable[nodeMapItem[1].name]=nodeMapItem[1]}function traverseTree(node,newParentId){if(!(node.data.name in realTimeNodeNameLookupTable)){node.data.x=node.position.x;node.data.y=node.position.y;if(newParentId){var parent=node.data.parent;if(parent){node.data.parent=newParentId}}var newNode=model.create(NodeR,node.data);var newNodeId=that.getCustomObjId(newNode);oldIdNewIdMap[node.data.id]=newNodeId;nodeMap.set(newNodeId,newNode);if(node.children.length>0){for(var i in node.children){var tmpNode=node.children[i];traverseTree(tmpNode,newNodeId)}}}else{var sameNameNode=realTimeNodeNameLookupTable[node.data.name];var sameNodeId=that.getCustomObjId(sameNameNode);oldIdNewIdMap[node.data.id]=sameNodeId;if(node.children.length>0){for(var i in node.children){var tmpNode=node.children[i];traverseTree(tmpNode,sameNodeId)}}}}var tree=window.GraphUtilities.createGraphHierarchyRealTime(nodes);for(var i in tree){var rootLevelNode=tree[i];traverseTree(rootLevelNode,rootLevelNode.data.id)}for(var i in edges){var edge=edges[i];edge.data.source=oldIdNewIdMap[edge.data.source];edge.data.target=oldIdNewIdMap[edge.data.target];var newEdge=model.create(EdgeR,edge.data);var newEdgeID=this.getCustomObjId(newEdge);edgeMap.set(newEdgeID,newEdge)}};RealTimeManager.prototype.updateLayoutProperties=function(newLayoutProperties){var model=this.realTimeDoc.getModel();var root=model.getRoot();var layoutPropertiesR=root.get(this.LAYOUT_PROPS_NAME);model.beginCompoundOperation();for(var property in newLayoutProperties){if(newLayoutProperties.hasOwnProperty(property)){layoutPropertiesR[property]=newLayoutProperties[property]}}model.endCompoundOperation()};RealTimeManager.prototype.updateGlobalOptions=function(newOptions){var model=this.realTimeDoc.getModel();var root=model.getRoot();var globalOptions=root.get(this.GLOBAL_OPTS_NAME);model.beginCompoundOperation();for(var property in globalOptions){if(newOptions.hasOwnProperty(property)){globalOptions[property]=newOptions[property]}}model.endCompoundOperation()};RealTimeManager.prototype.getCustomObjId=function(object){return gapi.drive.realtime.custom.getId(object)};RealTimeManager.prototype.registerTypes=function(){this.createRealTimeObjectDefinitions()};RealTimeManager.prototype.createGraphHierarchy=function(nodes){var tree=[];var mappedArr={};for(var i=0,len=nodes.length;i<len;i++){var arrElem=nodes[i];mappedArr[arrElem.data.id]=arrElem;mappedArr[arrElem.data.id].children=[]}for(var id in mappedArr){var mappedElem=mappedArr[id];if(mappedElem.data.parent){mappedArr[mappedElem.data.parent].children.push(mappedElem)}else{tree.push(mappedElem)}}return tree};RealTimeManager.prototype.createRealTimeObjectDefinitions=function(){gapi.drive.realtime.custom.registerType(EdgeR,"EdgeR");gapi.drive.realtime.custom.registerType(NodeR,"NodeR");gapi.drive.realtime.custom.registerType(LayoutPropertiesR,"LayoutPropertiesR");gapi.drive.realtime.custom.registerType(GlobalOptionsR,"GlobalOptionsR");gapi.drive.realtime.custom.setInitializer(NodeR,NodeRInitializer);gapi.drive.realtime.custom.setInitializer(EdgeR,EdgeRInitializer);gapi.drive.realtime.custom.setInitializer(LayoutPropertiesR,LayoutPropertiesRInitializer);gapi.drive.realtime.custom.setInitializer(GlobalOptionsR,GlobalOptionsRInitializer);NodeR.prototype.name=gapi.drive.realtime.custom.collaborativeField("name");NodeR.prototype.type=gapi.drive.realtime.custom.collaborativeField("type");NodeR.prototype.x=gapi.drive.realtime.custom.collaborativeField("x");NodeR.prototype.y=gapi.drive.realtime.custom.collaborativeField("y");NodeR.prototype.parent=gapi.drive.realtime.custom.collaborativeField("parent");EdgeR.prototype.source=gapi.drive.realtime.custom.collaborativeField("source");EdgeR.prototype.target=gapi.drive.realtime.custom.collaborativeField("target");EdgeR.prototype.type=gapi.drive.realtime.custom.collaborativeField("type");LayoutPropertiesR.prototype.name=gapi.drive.realtime.custom.collaborativeField("name");LayoutPropertiesR.prototype.nodeRepulsion=gapi.drive.realtime.custom.collaborativeField("nodeRepulsion");LayoutPropertiesR.prototype.nodeOverlap=gapi.drive.realtime.custom.collaborativeField("nodeOverlap");LayoutPropertiesR.prototype.idealEdgeLength=gapi.drive.realtime.custom.collaborativeField("idealEdgeLength");LayoutPropertiesR.prototype.edgeElasticity=gapi.drive.realtime.custom.collaborativeField("edgeElasticity");LayoutPropertiesR.prototype.nestingFactor=gapi.drive.realtime.custom.collaborativeField("nestingFactor");LayoutPropertiesR.prototype.gravity=gapi.drive.realtime.custom.collaborativeField("gravity");LayoutPropertiesR.prototype.numIter=gapi.drive.realtime.custom.collaborativeField("numIter");LayoutPropertiesR.prototype.tile=gapi.drive.realtime.custom.collaborativeField("tile");LayoutPropertiesR.prototype.animate=gapi.drive.realtime.custom.collaborativeField("animate");LayoutPropertiesR.prototype.randomize=gapi.drive.realtime.custom.collaborativeField("randomize");LayoutPropertiesR.prototype.gravityRangeCompound=gapi.drive.realtime.custom.collaborativeField("gravityRangeCompound");LayoutPropertiesR.prototype.gravityCompound=gapi.drive.realtime.custom.collaborativeField("gravityCompound");LayoutPropertiesR.prototype.gravityRange=gapi.drive.realtime.custom.collaborativeField("gravityRange");GlobalOptionsR.prototype.zoomLevel=gapi.drive.realtime.custom.collaborativeField("zoomLevel");GlobalOptionsR.prototype.panLevel=gapi.drive.realtime.custom.collaborativeField("panLevel");var self=this;function registerAttributeChangeHandlersNodeR(){function updateElementHandler(event){var node=event.currentTarget;window.editorActionsManager.updateElementCallback(node,self.getCustomObjId(node))}this.addEventListener(gapi.drive.realtime.EventType.OBJECT_CHANGED,updateElementHandler)}function registerAttributeChangeHandlersLayoutPropertiesR(){function updateLayoutPropsHandler(event){var layoutProps=event.currentTarget;window.editorActionsManager.updateLayoutPropertiesCallback(layoutProps)}this.addEventListener(gapi.drive.realtime.EventType.OBJECT_CHANGED,updateLayoutPropsHandler)}function registerAttributeChangeHandlersGlobalOptionsR(){function updateGlobalOptionsRHandler(event){var globalOptions=event.currentTarget;window.editorActionsManager.changeGlobalOptions(globalOptions)}this.addEventListener(gapi.drive.realtime.EventType.OBJECT_CHANGED,updateGlobalOptionsRHandler)}gapi.drive.realtime.custom.setOnLoaded(NodeR,registerAttributeChangeHandlersNodeR);gapi.drive.realtime.custom.setOnLoaded(LayoutPropertiesR,registerAttributeChangeHandlersLayoutPropertiesR);gapi.drive.realtime.custom.setOnLoaded(GlobalOptionsR,registerAttributeChangeHandlersGlobalOptionsR)};var NodeR=function(){};var EdgeR=function(){};var LayoutPropertiesR=function(){};var GlobalOptionsR=function(){};var NodeRInitializer=function(params){var model=gapi.drive.realtime.custom.getModel(this);model.beginCompoundOperation();this.name=params.name||"undefined";this.type=params.type||"undefined";this.parent=params.parent||"undefined";this.x=params.x||"undefined";this.y=params.y||"undefined";model.endCompoundOperation()};var EdgeRInitializer=function(params){var model=gapi.drive.realtime.custom.getModel(this);model.beginCompoundOperation();this.type=params.type||"undefined";this.source=params.source||"undefined";this.target=params.target||"undefined";model.endCompoundOperation()};var LayoutPropertiesRInitializer=function(params){var model=gapi.drive.realtime.custom.getModel(this);this.name=params.name||"undefined";this.nodeRepulsion=params.nodeRepulsion||"undefined";this.nodeOverlap=params.nodeOverlap||"undefined";this.idealEdgeLength=params.idealEdgeLength||"undefined";this.edgeElasticity=params.edgeElasticity||"undefined";this.nestingFactor=params.nestingFactor||"undefined";this.gravity=params.gravity||"undefined";this.numIter=params.numIter||"undefined";this.tile=params.tile||"undefined";this.animate=params.animate||"undefined";this.randomize=params.randomize||false;this.gravityRangeCompound=params.gravityRangeCompound||"undefined";this.gravityCompound=params.gravityCompound||"undefined";this.gravityRange=params.gravityRange||"undefined"};var GlobalOptionsRInitializer=function(params){var model=gapi.drive.realtime.custom.getModel(this);model.beginCompoundOperation();this.zoomLevel=params.zoomLevel||"undefined";this.panLevel=params.panLevel||"undefined";model.endCompoundOperation()};return RealTimeManager}()},{}],194:[function(require,module,exports){module.exports=function(){window.utils={};utils.RealtimeUtils=function(options){this.init(options)};utils.RealtimeUtils.prototype={clientId:null,mimeType:"application/vnd.google-apps.drive-sdk",refreshInterval:18e5,scopes:["https://www.googleapis.com/auth/drive.install","https://www.googleapis.com/auth/drive.file","https://www.googleapis.com/auth/drive.readonly"],TCGA_APP_FOLDER_NAME:"TCGA_Pathway_Curation_Tool_Files",init:function(options){this.mergeOptions(options);this.authorizer=new utils.RealtimeAuthorizer(this);this.createRealtimeFile=this.createRealtimeFile.bind(this)},authorize:function(onAuthComplete,usePopup){this.authorizer.start(onAuthComplete,usePopup)},mergeOptions:function(options){for(var option in options){this[option]=options[option]}},getParam:function(urlParam){var regExp=new RegExp(urlParam+"=(.*?)($|&)","g");var match=window.location.search.match(regExp);if(match&&match.length){match=match[0];match=match.replace(urlParam+"=","").replace("&","")}else{match=null}return match},createRealtimeFile:function(title,callback,parentFolder){var that=this;var insertHash={resource:{mimeType:that.mimeType,name:title}};if(parentFolder)insertHash.resource.parents=[parentFolder];if(window.gapi.client.drive){window.gapi.client.drive.files.create(insertHash).then(function(resp){var fileId=resp.result.id;that.shareRealTimeFile(fileId);callback(resp)},function(reason){alert("An Error happened: "+reason.result.error.message);window.location.href="/"})}else{window.gapi.client.load("drive","v3",function(){window.gapi.client.drive.files.create(insertHash).then(function(resp){var fileId=resp.result.id;that.shareRealTimeFile(fileId);callback(resp)},function(reason){alert("An Error happened: "+reason.result.error.message);window.location.href="/"})})}},createAppFile:function(title,callback){var that=this;this.createAppFolder(function(folderId){that.createRealtimeFile(title,callback,folderId)})},createAppFolder:function(successHandler,appfolderName){var appFName=appfolderName||this.TCGA_APP_FOLDER_NAME;var that=this;if(window.gapi.client.drive){searchFolder(appFName,successHandler)}else{window.gapi.client.load("drive","v3",function(){searchFolder(appFName,successHandler)})}function searchFolder(appFolderName){var driveAPI=window.gapi.client.drive;var fileResource={q:"name='"+appFolderName+"' and "+"mimeType = 'application/vnd.google-apps.folder' and "+"trashed = false",spaces:"drive"};driveAPI.files.list(fileResource).then(function(res){var files=res.result.files;if(files.length>0){var id=files[0].id;successHandler(id)}else{var createProps={resource:{name:appFName,mimeType:"application/vnd.google-apps.folder"}};driveAPI.files.create(createProps).then(function(resp){var newFolderId=resp.result.id;successHandler(newFolderId)},function(err){console.log(err)})}},function(err){console.log(err)})}},shareRealTimeFile:function(fileId){window.gapi.client.drive.permissions.create({resource:{type:"anyone",role:"writer",allowFileDiscovery:false},fileId:fileId}).then(function(resp){console.log("File shared succesfully !")},function(reason){console.log("An Error happened: "+reason.result.error.message)})},load:function(documentId,onFileLoaded,initializeModel){var that=this;window.gapi.drive.realtime.load(documentId,function(doc){onFileLoaded(doc)},initializeModel,this.onError.bind(this))},onError:function(error){if(error.type==window.gapi.drive.realtime.ErrorType.TOKEN_REFRESH_REQUIRED){this.authorizer.authorize(function(){console.log("Error, auth refreshed")},false)}else if(error.type==window.gapi.drive.realtime.ErrorType.CLIENT_ERROR){alert("An Error happened: "+error.message);window.location.href="/"}else if(error.type==window.gapi.drive.realtime.ErrorType.NOT_FOUND){alert("The file was not found. It does not exist or you do not have "+"read access to the file.");window.location.href="/"}else if(error.type==window.gapi.drive.realtime.ErrorType.FORBIDDEN){alert("You do not have access to this file. Try having the owner share"+"it with you from Google Drive.");window.location.href="/"}}};utils.RealtimeAuthorizer=function(realtimeUtil){this.util=realtimeUtil;this.handleAuthResult=this.handleAuthResult.bind(this);this.token=null};utils.RealtimeAuthorizer.prototype={start:function(onAuthComplete,usePopup){var that=this;window.gapi.load("auth:client,drive-realtime,drive-share",{callback:function(){that.authorize(onAuthComplete,usePopup)}});if(this.authTimer){window.clearTimeout(this.authTimer)}this.refreshAuth()},authorize:function(onAuthComplete,usePopup){this.onAuthComplete=onAuthComplete;window.gapi.auth.authorize({client_id:this.util.clientId,scope:this.util.scopes,immediate:!usePopup},this.handleAuthResult)},handleAuthResult:function(authResult){if(authResult&&!authResult.error){this.token=authResult.access_token}this.onAuthComplete(authResult)},refreshAuth:function(){var that=this;this.authTimer=setTimeout(function(){that.authorize(function(){console.log("Refreshed Auth Token")},false);that.refreshAuth()},this.util.refreshInterval)}}}()},{}],195:[function(require,module,exports){var SaveLoadUtilities=require("./SaveLoadUtility.js");module.exports=function(){var SVGExporter=function(){this.SVGNameSpace="http://www.w3.org/2000/svg";this.svg=document.createElementNS(this.SVGNameSpace,"svg");this.NODE_FILL_COLOR="rgb(255,255,255)";this.FAMILY_FILL_COLOR="rgb(255,255,255)";this.FAMILY_STROKE_COLOR="rgb(204,204,204)";this.NODE_STROKE_COLOR="rgb(0,0,0)";this.COMPARTMENT_STROKE_WIDTH=2;this.NODE_STROKE_WIDTH=1;this.NODE_OPACITY=.5;this.ROUNDING_FACTOR=6;this.GENOMICDATA_LABEL_Y_OFFSET=-15;this.EDGE_WIDTH=1;this.T_WIDTH=2;this.T_HEIGHT=8;this.T_ARROW_HEAD_OFFSET=2;this.TRIANGLE_ARROW_HEAD_HEIGHT=8;this.TRIANGLE_ARROW_HEAD_WIDTH=8;this.DASH_PARAMETERS="5, 3";this.COMPOUND_MARGIN=8;this.NODE_FONT_SIZE=14};SVGExporter.prototype.resetSVG=function(){this.svg=document.createElementNS(this.SVGNameSpace,"svg")};SVGExporter.prototype.exportGraph=function(nodes,edges){this.resetSVG();var cyBounds=cy.extent();this.svg.setAttribute("viewBox",cyBounds.x1+" "+cyBounds.y1+" "+cyBounds.w+" "+cyBounds.h);var that=this;var nodeMap={};var nodeTree=window.GraphUtilities.createGraphHierarchy(nodes);var traverseFunction=function(node){nodeMap[node.id()]=node;var genomicDataSVG=window.editorActionsManager.getGenomicDataSVG(node).children;that.svg.appendChild(that.createRect(node));var labelOffset=genomicDataSVG&&genomicDataSVG.length>0?that.GENOMICDATA_LABEL_Y_OFFSET:0;that.svg.appendChild(that.createText(node,labelOffset));if(genomicDataSVG){while(genomicDataSVG.length>0){var elemSVG=genomicDataSVG[0];var nodePosition=node.position();var svgX=elemSVG.getAttribute("x");var svgY=elemSVG.getAttribute("y");elemSVG.setAttribute("x",nodePosition.x-node.width()/2+parseFloat(svgX));elemSVG.setAttribute("y",nodePosition.y-node.height()/2+parseFloat(svgY));that.svg.appendChild(elemSVG)}}if(node.childNodes){for(var i in node.childNodes){traverseFunction(node.childNodes[i])}}};for(var i in nodeTree){var rootLevelNode=nodeTree[i];traverseFunction(rootLevelNode)}edges.forEach(function(edge){var source=nodeMap[edge.source().id()];var target=nodeMap[edge.target().id()];that.drawEdge(edge,source,target)});return this.svg.outerHTML};SVGExporter.prototype.drawEdge=function(edge,source,target){var edgeType=edge.data().type;var sourceRectangle={x:source.position().x,y:source.position().y,width:source.width(),height:source.height()};var targetRectangle={x:target.position().x,y:target.position().y,width:target.width(),height:target.height()};if(source.isParent()){sourceRectangle.width+=this.COMPOUND_MARGIN;sourceRectangle.height+=this.COMPOUND_MARGIN}if(target.isParent()){targetRectangle.width+=this.COMPOUND_MARGIN;targetRectangle.height+=this.COMPOUND_MARGIN}var clipPoints=this.findClippingPoints(sourceRectangle,targetRectangle);var unitV=unitVector({x:clipPoints.targetClipPoints.x-clipPoints.sourceClipPoints.x,y:clipPoints.targetClipPoints.y-clipPoints.sourceClipPoints.y});var inverseUnitV=scale(unitV,-1);var targetX=clipPoints.targetClipPoints.x;var targetY=clipPoints.targetClipPoints.y;if(edgeType=="ACTIVATES"||edgeType=="INDUCES"){targetX=clipPoints.targetClipPoints.x+this.TRIANGLE_ARROW_HEAD_HEIGHT*inverseUnitV.x;targetY=clipPoints.targetClipPoints.y+this.TRIANGLE_ARROW_HEAD_HEIGHT*inverseUnitV.y;var point1Vector=rotateVector(unitV,Math.PI/2);var point2Vector=rotateVector(unitV,-Math.PI/2);point1Vector=scale(point1Vector,this.TRIANGLE_ARROW_HEAD_WIDTH/2);point2Vector=scale(point2Vector,this.TRIANGLE_ARROW_HEAD_WIDTH/2);var point1X=targetX+point1Vector.x;var point1Y=targetY+point1Vector.y;var point2X=targetX+point2Vector.x;var point2Y=targetY+point2Vector.y;var polySVG=document.createElementNS(this.SVGNameSpace,"polygon");polySVG.setAttribute("points",point1X+","+point1Y+","+point2X+","+point2Y+","+clipPoints.targetClipPoints.x+","+clipPoints.targetClipPoints.y);this.svg.appendChild(polySVG)}else if(edgeType=="INHIBITS"||edgeType=="REPRESSES"){targetX=clipPoints.targetClipPoints.x+this.T_ARROW_HEAD_OFFSET*inverseUnitV.x;targetY=clipPoints.targetClipPoints.y+this.T_ARROW_HEAD_OFFSET*inverseUnitV.y;var point1Vector=rotateVector(unitV,Math.PI/2);var point2Vector=rotateVector(unitV,-Math.PI/2);point1Vector=scale(point1Vector,this.T_HEIGHT/2);point2Vector=scale(point2Vector,this.T_HEIGHT/2);var point1X=targetX+point1Vector.x;var point1Y=targetY+point1Vector.y;var point2X=targetX+point2Vector.x;var point2Y=targetY+point2Vector.y;var lineSVG=document.createElementNS(this.SVGNameSpace,"line");lineSVG.setAttribute("x1",point1X);lineSVG.setAttribute("y1",point1Y);lineSVG.setAttribute("x2",point2X);lineSVG.setAttribute("y2",point2Y);lineSVG.setAttribute("stroke-width",this.T_WIDTH);lineSVG.setAttribute("stroke","black");this.svg.appendChild(lineSVG)}var lineSVG=document.createElementNS(this.SVGNameSpace,"line");lineSVG.setAttribute("x1",clipPoints.sourceClipPoints.x);lineSVG.setAttribute("y1",clipPoints.sourceClipPoints.y);lineSVG.setAttribute("x2",targetX);lineSVG.setAttribute("y2",targetY);lineSVG.setAttribute("stroke-width",this.EDGE_WIDTH);lineSVG.setAttribute("stroke","black");if(edgeType=="INDUCES"||edgeType=="REPRESSES"){lineSVG.setAttribute("stroke-dasharray",this.DASH_PARAMETERS)}this.svg.appendChild(lineSVG)};SVGExporter.prototype.findClippingPoints=function(sourceRectangle,targetRectangle){var sourceAABB={xMin:sourceRectangle.x-sourceRectangle.width/2,xMax:sourceRectangle.x+sourceRectangle.width/2,yMin:sourceRectangle.y-sourceRectangle.height/2,yMax:sourceRectangle.y+sourceRectangle.height/2};var targetAABB={xMin:targetRectangle.x-targetRectangle.width/2,xMax:targetRectangle.x+targetRectangle.width/2,yMin:targetRectangle.y-targetRectangle.height/2,yMax:targetRectangle.y+targetRectangle.height/2};var line1={x1:sourceRectangle.x,y1:sourceRectangle.y,x2:targetRectangle.x,y2:targetRectangle.y};var line2={x1:targetRectangle.x,y1:targetRectangle.y,x2:sourceRectangle.x,y2:sourceRectangle.y};var returnObj={sourceClipPoints:clipLine(line1,sourceAABB),targetClipPoints:clipLine(line2,targetAABB)};return returnObj};SVGExporter.prototype.createRect=function(node){var nodeRectangle=document.createElementNS(this.SVGNameSpace,"rect");var nodePosition=node.position();if(node.isParent()){nodeRectangle.setAttribute("x",nodePosition.x-node.width()/2-this.COMPOUND_MARGIN/2);nodeRectangle.setAttribute("y",nodePosition.y-node.height()/2-this.COMPOUND_MARGIN/2);nodeRectangle.setAttribute("width",node.width()+this.COMPOUND_MARGIN);nodeRectangle.setAttribute("height",node.height()+this.COMPOUND_MARGIN)}else{nodeRectangle.setAttribute("x",nodePosition.x-node.width()/2);nodeRectangle.setAttribute("y",nodePosition.y-node.height()/2);nodeRectangle.setAttribute("width",node.width());nodeRectangle.setAttribute("height",node.height())}nodeRectangle=this.createStyleForNodes(node,nodeRectangle);return nodeRectangle};SVGExporter.prototype.createText=function(node,genomicDataOffset){var verticalTextOffset=5;var nodePosition=node.position();var svgText=document.createElementNS(this.SVGNameSpace,"text");if(node.isParent()){verticalTextOffset=20;svgText.setAttribute("x",nodePosition.x);svgText.setAttribute("y",nodePosition.y+node.height()/2+verticalTextOffset)}else{svgText.setAttribute("x",nodePosition.x);svgText.setAttribute("y",nodePosition.y+verticalTextOffset+genomicDataOffset)}svgText.setAttribute("font-family","Arial");svgText.setAttribute("text-anchor","middle");svgText.setAttribute("font-size",this.NODE_FONT_SIZE);svgText.innerHTML=node.data().name;return svgText};SVGExporter.prototype.createStyleForNodes=function(node,nodeRectangle){var nodeType=node.data().type;var strokeWidth=this.NODE_STROKE_WIDTH;var strokeColor=this.NODE_STROKE_COLOR;var fillColor=this.NODE_FILL_COLOR;var opacity=this.NODE_OPACITY;var strokeOpacity=1;if(nodeType=="GENE"||nodeType=="COMPARTMENT"){nodeRectangle.setAttribute("rx",this.ROUNDING_FACTOR);nodeRectangle.setAttribute("ry",this.ROUNDING_FACTOR);if(nodeType=="COMPARTMENT")strokeWidth=this.COMPARTMENT_STROKE_WIDTH}if(nodeType=="PROCESS"){opacity=0;strokeOpacity=0}if(nodeType=="FAMILY"){fillColor=this.FAMILY_FILL_COLOR;strokeColor=this.FAMILY_STROKE_COLOR}var styleString="stroke-width:"+strokeWidth+";"+"stroke:"+strokeColor+";"+"fill-opacity:"+opacity+";"+"fill:"+fillColor+";"+"stroke-opacity:"+strokeOpacity+";";nodeRectangle.setAttribute("style",styleString);return nodeRectangle};function clipLine(line,rectangle){var INSIDE=0;var LEFT=1;var RIGHT=2;var BOTTOM=4;var TOP=8;function getOutCode(point,rectangle){var outcode=INSIDE;if(point.x<rectangle.xMin)outcode=outcode|LEFT;else if(point.x>rectangle.xMax)outcode=outcode|RIGHT;if(point.y<rectangle.yMin)outcode=outcode|TOP;else if(point.y>rectangle.yMax)outcode=outcode|BOTTOM;return outcode}var outcode0=getOutCode({x:line.x1,y:line.y1},rectangle);var outcode1=getOutCode({x:line.x2,y:line.y2},rectangle);var slope=(line.y2-line.y1)/(line.x2-line.x1);var returnCoords={x:line.x1,y:line.y1,slope:slope};var accept=false;while(true){if(!(outcode0|outcode1)){accept=true;break}else if(outcode0&outcode1){break}else{var outCode=outcode0?outcode0:outcode1;if(outCode&TOP){returnCoords.x=line.x1+(rectangle.yMin-line.y1)/slope;returnCoords.y=rectangle.yMin}else if(outCode&BOTTOM){returnCoords.x=line.x1+(rectangle.yMax-line.y1)/slope;returnCoords.y=rectangle.yMax}else if(outCode&RIGHT){returnCoords.x=rectangle.xMax;returnCoords.y=line.y1+slope*(rectangle.xMax-line.x1)}else if(outCode&LEFT){returnCoords.x=rectangle.xMin;returnCoords.y=line.y1+slope*(rectangle.xMin-line.x1)}if(outCode==outcode0){outcode0=getOutCode({x:returnCoords.x,y:returnCoords.y},rectangle)}else{outcode1=getOutCode({x:returnCoords.x,y:returnCoords.y},rectangle)}}}return returnCoords}function dotProduct(v1,v2){var newX=v1.x*v2.x;var newY=v1.y*v2.y;return{x:newX,y:newY}}function unitVector(v){var inverseLength=1/Math.sqrt(v.x*v.x+v.y*v.y);
+
+return{x:v.x*inverseLength,y:v.y*inverseLength}}function rotateVector(v,radians){var newX=v.x*Math.cos(radians)-v.y*Math.sin(radians);var newY=v.x*Math.sin(radians)+v.y*Math.cos(radians);return{x:newX,y:newY}}function scale(v,scalar){var newX=v.x*scalar;var newY=v.y*scalar;return{x:newX,y:newY}}return SVGExporter}()},{"./SaveLoadUtility.js":196}],196:[function(require,module,exports){var SaveLoadUtils={exportGraph:function(pathwayDetails){var returnString=pathwayDetails.pathwayTitle+"\n\n";returnString+=pathwayDetails.pathwayDescription+"\n\n";var nodes=pathwayDetails.graphJSON.elements.nodes;var edges=pathwayDetails.graphJSON.elements.edges;returnString+="--NODE_NAME	NODE_ID	NODE_TYPE	PARENT_ID	POSX	POSY--"+"\n";if(nodes){for(var i=0;i<nodes.length;i++){var nodeName=nodes[i].data.name;var parentID=nodes[i].data.parent;var nodeID=nodes[i].data.id;var pos=nodes[i].position;var nodeType=nodes[i].data.type;if(nodes[i].data.parent){parentID=nodes[i].data.parent}else{parentID=-1}returnString+=nodeName+"	"+nodeID+"	"+nodeType+"	"+parentID+"	"+parseInt(pos.x)+"	"+parseInt(pos.y)+"	\n"}}returnString+="\n";returnString+="--EDGE_ID	SOURCE	TARGET	EDGE_TYPE\n";if(edges){for(var i=0;i<edges.length;i++){var edgeID=edges[i].data.id;var edgeType=edges[i].data.type;var source=edges[i].data.source;var target=edges[i].data.target;returnString+=edgeID+"	"+source+"	"+target+"	"+edgeType+"\n"}}return returnString},parseGraph:function(graphText){var allEles=[];var nodes=[];var edges=[];var seperator=/\r?\n|\r/;var lines=graphText.split(seperator);var edgesStartIndex=-1;var graphDataIndex=5;var title=lines[0];var description=lines[2];if(lines[0].includes("--NODE_NAME")){graphDataIndex=1;title="New Pathway";description=""}for(var i=graphDataIndex;i<lines.length;i++){if(lines[i].length==0||lines[i]===""){edgesStartIndex=i+2;break}var lineData=lines[i].split("	");var nodeName=lineData[0];var nodeID=lineData[1];var nodeType=lineData[2];var parentID=lineData[3];var posX=lineData.length>4?lineData[4]:"0";var posY=lineData.length>5?lineData[5]:"0";var newNode={group:"nodes",data:{id:nodeID,name:nodeName,type:nodeType},position:{x:parseInt(posX),y:parseInt(posY)}};if(parentID!="-1"){newNode.data.parent=parentID}nodes.push(newNode)}for(var i=edgesStartIndex;i<lines.length;i++){if(lines[i].length==0){break}var lineData=lines[i].split("	");var edgeID=lineData[0];var edgeSource=lineData[1];var edgeTarget=lineData[2];var edgeType=lineData[3];newEdge={group:"edges",data:{id:edgeID,type:edgeType,source:edgeSource,target:edgeTarget}};edges.push(newEdge)}return{title:title,description:description,nodes:nodes,edges:edges}}};module.exports=SaveLoadUtils},{}],197:[function(require,module,exports){module.exports=function($){"use strict";var movedNodes=[];function handleNodeAlignment(param){var tmpNodes=window.editorActionsManager.selecteNodeStack;var nodes=cy.collection();var nodeMap={};movedNodes=[];for(var key in tmpNodes){nodes=nodes.add(tmpNodes[key])}nodes.forEach(function(node,index){if(node.isParent()){nodeMap[node.id()]=node}});if(nodes.length>0){var firstSelected=nodes[0];var firstBbox=firstSelected.boundingBox();nodes.forEach(function(node,index){if(index==0){return}if(nodeMap[node.parent().id()]==null){var newPosition=calculateNewPosition(param,node,firstBbox);changePosition(node,0,0,newPosition)}});window.editorActionsManager.handleChangePositionByAlignment(movedNodes)}}function calculateNewPosition(param,node,referenceBbox){var currentPos=node.position();var currentBbox=node.boundingBox();var newPosition;if(param==="vLeft"){newPosition={x:referenceBbox.x1+currentBbox.w/2,y:currentPos.y}}else if(param==="vCen"){newPosition={x:referenceBbox.x1+referenceBbox.w/2,y:currentPos.y}}else if(param==="vRight"){newPosition={x:referenceBbox.x2-currentBbox.w/2,y:currentPos.y}}else if(param==="hTop"){newPosition={x:currentPos.x,y:referenceBbox.y1+currentBbox.h/2}}else if(param==="hMid"){newPosition={x:currentPos.x,y:referenceBbox.y1+referenceBbox.h/2}}else if(param==="hBot"){newPosition={x:currentPos.x,y:referenceBbox.y2-currentBbox.h/2}}else{console.log("Error: wrong alignment name "+param);return}return newPosition}function changePosition(node,dx,dy,newPos){if(node.isParent()){var childNodes=node.children();var parentBbox=node.boundingBox();childNodes.forEach(function(childNode,index){var childBbox=childNode.boundingBox();var _dx=-(parentBbox.x1-childBbox.x1)-parentBbox.w/2+childBbox.w/2;var _dy=-(parentBbox.y1-childBbox.y1)-parentBbox.h/2+childBbox.h/2;if(childNode.isParent()){changePosition(childNode,0,0,{x:newPos.x+_dx,y:newPos.y+_dy})}else{changePosition(childNode,_dx,_dy,newPos)}})}else{var position={x:newPos.x+dx,y:newPos.y+dy};movedNodes.push({node:node,nextPosition:position,oldPosition:null})}}$(".viewDropdown li a").click(function(event){event.preventDefault();var dropdownLinkRole=$(event.target).attr("role");if(dropdownLinkRole=="grid"){$("#gridOptionsDiv").modal("show")}else{handleNodeAlignment(dropdownLinkRole)}})}(window.$)},{}],198:[function(require,module,exports){module.exports=function(){function CBioPortalAccessor(){this.GET_ALL_CANCER_STUDIES_URL="http://www.cbioportal.org/webservice.do?cmd=getCancerStudies";this.GET_GENETIC_PROFILES_URL="http://www.cbioportal.org/webservice.do?cmd=getGeneticProfiles&cancer_study_id=";this.GET_PROFILE_DATA_URL="http://www.cbioportal.org/webservice.do?cmd=getProfileData";this.MRNA_EXP_STUDY_NAME="_mrna_median_Zscores";this.CNA_EXP_STUDY_NAME="_gistic";this.MUTATION_EXP_STUDY_NAME="_mutations";this.CNA_DELETION=-2;this.CNA_GAIN=2;this.Z_SCORE_UPPER_THRESHOLD=2;this.Z_SCORE_LOWER_THRESHOLD=-2;this.MUTATION="Mutation";this.GENE_EXPRESSION="Gene Expression";this.CNA="Copy Number Alteration"}CBioPortalAccessor.prototype.fetchCancerStudies=function(callbackFunction){var cancerStudies={};var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var seperator=/\r?\n|\r/;var lines=request.responseText.split(seperator);for(var i=1;i<lines.length;i++){if(lines[i].length<=0)continue;var lineData=lines[i].split("	");cancerStudies[lineData[0]]=lineData}callbackFunction(cancerStudies)}else if(request.readyState===XMLHttpRequest.DONE&&request.status!=200){window.notificationManager.createNotification("Error retrieving cancer studies","fail")}};request.open("GET",this.GET_ALL_CANCER_STUDIES_URL);request.send()};CBioPortalAccessor.prototype.getSupportedGeneticProfiles=function(cancerStudy,callbackFunction){var outData={};var request=new XMLHttpRequest;var self=this;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var seperator=/\r?\n|\r/;var lines=request.responseText.split(seperator);for(var i=1;i<lines.length;i++){if(lines[i].length<=0)continue;var lineData=lines[i].split("	");var cancerProfileName=lineData[0];if(self.isSupportedCancerProfile(cancerProfileName)){outData[cancerProfileName]=lineData}}callbackFunction(outData)}else if(request.readyState===XMLHttpRequest.DONE&&request.status!=200){window.notificationManager.createNotification("Error retrieving genetic profiles","fail")}};request.open("GET",this.GET_GENETIC_PROFILES_URL+cancerStudy);request.send()};CBioPortalAccessor.prototype.isSupportedCancerProfile=function(cancerProfileName){return cancerProfileName.endsWith(this.MRNA_EXP_STUDY_NAME)||cancerProfileName.endsWith(this.CNA_EXP_STUDY_NAME)||cancerProfileName.endsWith(this.MUTATION_EXP_STUDY_NAME)};CBioPortalAccessor.prototype.getDataType=function(cancerProfileName){if(cancerProfileName.endsWith(this.MRNA_EXP_STUDY_NAME)){return this.GENE_EXPRESSION}else if(cancerProfileName.endsWith(this.CNA_EXP_STUDY_NAME)){return this.CNA}else if(cancerProfileName.endsWith(this.MUTATION_EXP_STUDY_NAME)){return this.MUTATION}};CBioPortalAccessor.prototype.calcAlterationPercentages=function(paramLines,geneticProfileId,callbackFunction){var seperator=/\r?\n|\r/;var lines=paramLines.split(seperator);var startIndex=0;for(var i in lines){if(!lines[i].startsWith("#")){startIndex=parseInt(i);break}}var tumorSamples=lines[startIndex].split("	");var numOfTumorSamples=tumorSamples.length-2;var outData={};outData[geneticProfileId]={};var geneticProfileType=this.getDataType(geneticProfileId);for(var i=startIndex+1;i<lines.length;i++){if(lines[i].length<=0)continue;var lineData=lines[i].split("	");var profileDataAlteration=0;for(var j=2;j<lineData.length;j++){if(lineData[j]!=="NaN"){if(geneticProfileType==this.MUTATION)profileDataAlteration++;else if(geneticProfileType==this.CNA&&(lineData[j]==this.CNA_GAIN||lineData[j]==this.CNA_DELETION))profileDataAlteration++;else if(geneticProfileType==this.GENE_EXPRESSION&&(parseInt(lineData[j])>=this.Z_SCORE_UPPER_THRESHOLD||parseInt(lineData[j])<=this.Z_SCORE_LOWER_THRESHOLD))profileDataAlteration++}}outData[geneticProfileId][lineData[1]]=profileDataAlteration/numOfTumorSamples*100}callbackFunction(outData)};CBioPortalAccessor.prototype.getProfileData=function(params,callbackFunction){var outData={};var request=new XMLHttpRequest;var self=this;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){self.calcAlterationPercentages(request.responseText,params.geneticProfileId,callbackFunction);window.notificationManager.createNotification("Profile data "+params.geneticProfileId+" is succesfully loaded from cBioPortal ","success")}};var queryURL=this.GET_PROFILE_DATA_URL;queryURL+="&case_set_id="+params.caseSetId+"_sequenced";queryURL+="&genetic_profile_id="+params.geneticProfileId;queryURL+="&gene_list=";for(var i=0;i<params.genes.length;i++){queryURL+=params.genes[i];if(i!=params.genes.length-1)queryURL+="+"}request.open("GET",queryURL);request.send()};return CBioPortalAccessor}()},{}],199:[function(require,module,exports){var $=window.$=window.jQuery=require("jquery");var _=window._=require("underscore");var Backbone=window.Backbone=require("backbone");Backbone.$=$;require("bootstrap");require("./RealTimeUtils");var WelcomePageView=require("./BackboneViews/WelcomePageView.js");var AppManager=require("./AppManager");var RealTimeModule=require("./RealTimeManager");var SaveLoadUtilities=require("./SaveLoadUtility.js");$(window).load(function(){function getLocalPathway(pathwayName){var request=new XMLHttpRequest;request.onreadystatechange=function(){if(request.readyState===XMLHttpRequest.DONE&&request.status===200){var allEles=SaveLoadUtilities.parseGraph(request.responseText);window.editorActionsManager.loadFile(allEles.nodes,allEles.edges);window.appManager.pathwayDetailsView.updatePathwayProperties({fileName:allEles.title+".txt",pathwayTitle:allEles.title,pathwayDescription:allEles.description})}else{console.log(request.responseText)}};request.open("GET","/pathway?filename="+pathwayName);request.send()}var localUsageCallback=function(postSuccess){var appInstance=new AppManager(false);postSuccess();var uri=window.location.search;if(uri.length>0){var pathwayName=uri.substring(uri.indexOf("=")+1,uri.length);getLocalPathway(pathwayName)}};var collaborativeUsageCallback=function(postSuccess){var realTimeManager=new RealTimeModule(postSuccess);var realTimeAuthCallback=function(response){if(response.error){function popUpAuthHandler(response){if(response.error)console.log(response.error);var appInstance=new AppManager(true,realTimeManager);realTimeManager.initRealTimeAPI()}realTimeManager.authorize(popUpAuthHandler,true)}else{var appInstance=new AppManager(true,realTimeManager);realTimeManager.initRealTimeAPI()}};realTimeManager.authorize(realTimeAuthCallback,false)};var welPage=new WelcomePageView({el:$(".welcomePageContainer"),localUsageCallback:localUsageCallback,collaborativeUsageCallback:collaborativeUsageCallback}).render();var uri=window.location.search;if(uri.length>0){var uriTerm=uri.substring(1,uri.indexOf("="));if(uriTerm==="id"){$(".landingContent h3").hide();$(".welPageButtons").hide();$("#collaborativeUsage").click();$(".continueButton").click().hide()}else if(uriTerm==="filename"){$(".landingContent h3").hide();$(".welPageButtons").hide();$("#localUsage").click();$(".continueButton").click().hide()}}})},{"./AppManager":172,"./BackboneViews/WelcomePageView.js":179,"./RealTimeManager":193,"./RealTimeUtils":194,"./SaveLoadUtility.js":196,backbone:1,bootstrap:4,jquery:139,underscore:140}],200:[function(require,module,exports){},{}],201:[function(require,module,exports){exports.endianness=function(){return"LE"};exports.hostname=function(){if(typeof location!=="undefined"){return location.hostname}else return""};exports.loadavg=function(){return[]};exports.uptime=function(){return 0};exports.freemem=function(){return Number.MAX_VALUE};exports.totalmem=function(){return Number.MAX_VALUE};exports.cpus=function(){return[]};exports.type=function(){return"Browser"};exports.release=function(){if(typeof navigator!=="undefined"){return navigator.appVersion}return""};exports.networkInterfaces=exports.getNetworkInterfaces=function(){return{}};exports.arch=function(){return"javascript"};exports.platform=function(){return"browser"};exports.tmpdir=exports.tmpDir=function(){return"/tmp"};exports.EOL="\n"},{}],202:[function(require,module,exports){(function(process){function normalizeArray(parts,allowAboveRoot){var up=0;for(var i=parts.length-1;i>=0;i--){var last=parts[i];if(last==="."){parts.splice(i,1)}else if(last===".."){parts.splice(i,1);up++}else if(up){parts.splice(i,1);up--}}if(allowAboveRoot){for(;up--;up){parts.unshift("..")}}return parts}var splitPathRe=/^(\/?|)([\s\S]*?)((?:\.{1,2}|[^\/]+?|)(\.[^.\/]*|))(?:[\/]*)$/;var splitPath=function(filename){return splitPathRe.exec(filename).slice(1)};exports.resolve=function(){var resolvedPath="",resolvedAbsolute=false;for(var i=arguments.length-1;i>=-1&&!resolvedAbsolute;i--){var path=i>=0?arguments[i]:process.cwd();if(typeof path!=="string"){throw new TypeError("Arguments to path.resolve must be strings")}else if(!path){continue}resolvedPath=path+"/"+resolvedPath;resolvedAbsolute=path.charAt(0)==="/"}resolvedPath=normalizeArray(filter(resolvedPath.split("/"),function(p){return!!p}),!resolvedAbsolute).join("/");return(resolvedAbsolute?"/":"")+resolvedPath||"."};exports.normalize=function(path){var isAbsolute=exports.isAbsolute(path),trailingSlash=substr(path,-1)==="/";path=normalizeArray(filter(path.split("/"),function(p){return!!p}),!isAbsolute).join("/");if(!path&&!isAbsolute){path="."}if(path&&trailingSlash){path+="/"}return(isAbsolute?"/":"")+path};exports.isAbsolute=function(path){return path.charAt(0)==="/"};exports.join=function(){var paths=Array.prototype.slice.call(arguments,0);return exports.normalize(filter(paths,function(p,index){if(typeof p!=="string"){throw new TypeError("Arguments to path.join must be strings")}return p}).join("/"))};exports.relative=function(from,to){from=exports.resolve(from).substr(1);to=exports.resolve(to).substr(1);function trim(arr){var start=0;for(;start<arr.length;start++){if(arr[start]!=="")break}var end=arr.length-1;for(;end>=0;end--){if(arr[end]!=="")break}if(start>end)return[];return arr.slice(start,end-start+1)}var fromParts=trim(from.split("/"));var toParts=trim(to.split("/"));var length=Math.min(fromParts.length,toParts.length);var samePartsLength=length;for(var i=0;i<length;i++){if(fromParts[i]!==toParts[i]){samePartsLength=i;break}}var outputParts=[];for(var i=samePartsLength;i<fromParts.length;i++){outputParts.push("..")}outputParts=outputParts.concat(toParts.slice(samePartsLength));return outputParts.join("/")};exports.sep="/";exports.delimiter=":";exports.dirname=function(path){var result=splitPath(path),root=result[0],dir=result[1];if(!root&&!dir){return"."}if(dir){dir=dir.substr(0,dir.length-1)}return root+dir};exports.basename=function(path,ext){var f=splitPath(path)[2];if(ext&&f.substr(-1*ext.length)===ext){f=f.substr(0,f.length-ext.length)}return f};exports.extname=function(path){return splitPath(path)[3]};function filter(xs,f){if(xs.filter)return xs.filter(f);var res=[];for(var i=0;i<xs.length;i++){if(f(xs[i],i,xs))res.push(xs[i])}return res}var substr="ab".substr(-1)==="b"?function(str,start,len){return str.substr(start,len)}:function(str,start,len){if(start<0)start=str.length+start;return str.substr(start,len)}}).call(this,require("_process"))},{_process:203}],203:[function(require,module,exports){var process=module.exports={};var queue=[];var draining=false;var currentQueue;var queueIndex=-1;function cleanUpNextTick(){draining=false;if(currentQueue.length){queue=currentQueue.concat(queue)}else{queueIndex=-1}if(queue.length){drainQueue()}}function drainQueue(){if(draining){return}var timeout=setTimeout(cleanUpNextTick);draining=true;var len=queue.length;while(len){currentQueue=queue;queue=[];while(++queueIndex<len){if(currentQueue){currentQueue[queueIndex].run()}}queueIndex=-1;len=queue.length}currentQueue=null;draining=false;clearTimeout(timeout)}process.nextTick=function(fun){var args=new Array(arguments.length-1);if(arguments.length>1){for(var i=1;i<arguments.length;i++){args[i-1]=arguments[i]}}queue.push(new Item(fun,args));if(queue.length===1&&!draining){setTimeout(drainQueue,0)}};function Item(fun,array){this.fun=fun;this.array=array}Item.prototype.run=function(){this.fun.apply(null,this.array)};process.title="browser";process.browser=true;process.env={};process.argv=[];process.version="";process.versions={};function noop(){}process.on=noop;process.addListener=noop;process.once=noop;process.off=noop;process.removeListener=noop;process.removeAllListeners=noop;process.emit=noop;process.binding=function(name){throw new Error("process.binding is not supported")};process.cwd=function(){return"/"};process.chdir=function(dir){throw new Error("process.chdir is not supported")};process.umask=function(){return 0}},{}]},{},[199]);
\ No newline at end of file
diff --git a/public/index.html b/public/index.html
index 4f1e5f69..e54e537e 100755
--- a/public/index.html
+++ b/public/index.html
@@ -13,11 +13,10 @@
   <link rel="stylesheet" href="node_modules/cytoscape-navigator/cytoscape.js-navigator.css" charset="utf-8">
   <link rel="stylesheet" href="node_modules/bootstrap-select/dist/css/bootstrap-select.min.css" charset="utf-8">
   <link rel="stylesheet" type="text/css" href="http://cdnjs.cloudflare.com/ajax/libs/qtip2/2.2.0/jquery.qtip.css">
-  <link rel="stylesheet" href="lib/js/bootstrap-color-picker/css/bootstrap-colorpicker.min.css" charset="utf-8">
 
   <!--For debugging-->
-  <link rel="stylesheet" href="bin/base.css" charset="utf-8">
-  <!--<link rel="stylesheet" href="bin/base.min.css" charset="utf-8">-->
+  <!--<link rel="stylesheet" href="bin/base.css" charset="utf-8">-->
+  <link rel="stylesheet" href="bin/base.min.css" charset="utf-8">
 </head>
 <body>
 
@@ -656,7 +655,7 @@ <h3 class="modal-title">Pathway Details</h3>
 </script>
 
 <script id="gridOptionsTemplate" type="text/template" class="template">
-  <div class="modal-dialog">
+  <div class="modal-dialog gridModal">
     <div class="modal-content">
       <div class="modal-header">
         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
@@ -666,34 +665,33 @@ <h3 class="modal-title">Grid Options</h3>
         <div class="modal-body">
           <form role="form" id="gripOptionsForm">
             <div class="input-group">
-              <label class="control-label col-sm-4" for="showGrid">Show Grid:</label>
-              <div class="col-sm-8 leftText">
+              <label class="control-label col-sm-8" for="showGrid">Show Grid:</label>
+              <div class="col-sm-4 leftText">
                 <input id="showGrid" type="checkbox" class="input-small layout-text" <% if (drawGrid){ %> checked<%}%>>
               </div>
             </div>
             <div class="input-group">
-              <label class="control-label col-sm-4" for="showGuides">Show Grid Guidelines:</label>
-              <div class="col-sm-8 leftText">
+              <label class="control-label col-sm-8" for="showGuides">Show Grid Guidelines:</label>
+              <div class="col-sm-4 leftText">
                 <input id="showGuides" type="checkbox" class="input-small layout-text" <% if (guidelines){ %> checked<%}%>>
               </div>
             </div>
             <div class="input-group">
-              <label class="control-label col-sm-4" for="showGuides">Snap to Grid:</label>
-              <div class="col-sm-8 leftText">
+              <label class="control-label col-sm-8" for="showGuides">Snap to Grid:</label>
+              <div class="col-sm-4 leftText">
                 <input id="snapToGrid" type="checkbox" class="input-small layout-text" <% if (snapToGrid){ %> checked<%}%>>
               </div>
             </div>
             <div class="input-group">
-              <label class="control-label col-sm-4" for="gridSize">Grid Size:</label>
-              <div class="col-sm-8">
+              <label class="control-label col-sm-8" for="gridSize">Grid Size:</label>
+              <div class="col-sm-4">
                 <input id="gridSize" type="text" class="form-control" value=<%= gridSpacing %> >
               </div>
             </div>
             <div id="colorPickerDiv" class="input-group colorpicker-component">
-              <label class="control-label col-sm-4" for="gridSize">Guideline Color:</label>
-              <div class="col-sm-8">
-                <input id="colorPickerInput" value="#000000" type="text" class="form-control" />
-                <span id="colorPickerButton" class="input-group-addon"><i></i></span>
+              <label class="control-label col-sm-8" for="gridSize">Guideline Color:</label>
+              <div class="col-sm-4">
+                <input  value="#000000" type="color" class="form-control" />
               </div>
             </div>
           </form>
@@ -736,12 +734,11 @@ <h3 class="modal-title">Grid Options</h3>
 <script src="lib/js/FileSaver.js" charset="utf-8"></script>
 
 <!--For debugging-->
- <script src="bin/base.js"></script>
-<!--<script src="bin/base.min.js"></script>-->
+ <!--<script src="bin/base.js"></script>-->
+<script src="bin/base.min.js"></script>
 <script src="lib/js/cytoscape-edgeHandles.js" charset="utf-8"></script>
 <script src="http://cdnjs.cloudflare.com/ajax/libs/qtip2/2.2.0/jquery.qtip.js"></script>
 <script src="https://code.jquery.com/ui/1.11.0/jquery-ui.min.js"></script>
-<script src="lib/js/bootstrap-color-picker/js/bootstrap-colorpicker.min.js" charset="utf-8"></script>
 
 </body>
 </html>
diff --git a/public/lib/js/bootstrap-color-picker/css/bootstrap-colorpicker.min.css b/public/lib/js/bootstrap-color-picker/css/bootstrap-colorpicker.min.css
deleted file mode 100644
index d1597b97..00000000
--- a/public/lib/js/bootstrap-color-picker/css/bootstrap-colorpicker.min.css
+++ /dev/null
@@ -1,10 +0,0 @@
-/*!
- * Bootstrap Colorpicker v2.3.6
- * https://itsjavi.com/bootstrap-colorpicker/
- *
- * Originally written by (c) 2012 Stefan Petre
- * Licensed under the Apache License v2.0
- * http://www.apache.org/licenses/LICENSE-2.0.txt
- *
- */.colorpicker-saturation{width:100px;height:100px;background-image:url(../img/bootstrap-colorpicker/saturation.png);cursor:crosshair;float:left}.colorpicker-saturation i{display:block;height:5px;width:5px;border:1px solid #000;-webkit-border-radius:5px;-moz-border-radius:5px;border-radius:5px;position:absolute;top:0;left:0;margin:-4px 0 0 -4px}.colorpicker-saturation i b{display:block;height:5px;width:5px;border:1px solid #fff;-webkit-border-radius:5px;-moz-border-radius:5px;border-radius:5px}.colorpicker-alpha,.colorpicker-hue{width:15px;height:100px;float:left;cursor:row-resize;margin-left:4px;margin-bottom:4px}.colorpicker-alpha i,.colorpicker-hue i{display:block;height:1px;background:#000;border-top:1px solid #fff;position:absolute;top:0;left:0;width:100%;margin-top:-1px}.colorpicker-hue{background-image:url(../img/bootstrap-colorpicker/hue.png)}.colorpicker-alpha{background-image:url(../img/bootstrap-colorpicker/alpha.png);display:none}.colorpicker-alpha,.colorpicker-hue,.colorpicker-saturation{background-size:contain}.colorpicker{padding:4px;min-width:130px;margin-top:1px;-webkit-border-radius:4px;-moz-border-radius:4px;border-radius:4px;z-index:2500}.colorpicker:after,.colorpicker:before{display:table;content:"";line-height:0}.colorpicker:after{clear:both}.colorpicker:before{content:'';display:inline-block;border-left:7px solid transparent;border-right:7px solid transparent;border-bottom:7px solid #ccc;border-bottom-color:rgba(0,0,0,.2);position:absolute;top:-7px;left:6px}.colorpicker:after{content:'';display:inline-block;border-left:6px solid transparent;border-right:6px solid transparent;border-bottom:6px solid #fff;position:absolute;top:-6px;left:7px}.colorpicker div{position:relative}.colorpicker.colorpicker-with-alpha{min-width:140px}.colorpicker.colorpicker-with-alpha .colorpicker-alpha{display:block}.colorpicker-color{height:10px;margin-top:5px;clear:both;background-image:url(../img/bootstrap-colorpicker/alpha.png);background-position:0 100%}.colorpicker-color div{height:10px}.colorpicker-selectors{display:none;height:10px;margin-top:5px;clear:both}.colorpicker-selectors i{cursor:pointer;float:left;height:10px;width:10px}.colorpicker-selectors i+i{margin-left:3px}.colorpicker-element .add-on i,.colorpicker-element .input-group-addon i{display:inline-block;cursor:pointer;height:16px;vertical-align:text-top;width:16px}.colorpicker.colorpicker-inline{position:relative;display:inline-block;float:none;z-index:auto}.colorpicker.colorpicker-horizontal{width:110px;min-width:110px;height:auto}.colorpicker.colorpicker-horizontal .colorpicker-saturation{margin-bottom:4px}.colorpicker.colorpicker-horizontal .colorpicker-color{width:100px}.colorpicker.colorpicker-horizontal .colorpicker-alpha,.colorpicker.colorpicker-horizontal .colorpicker-hue{width:100px;height:15px;float:left;cursor:col-resize;margin-left:0;margin-bottom:4px}.colorpicker.colorpicker-horizontal .colorpicker-alpha i,.colorpicker.colorpicker-horizontal .colorpicker-hue i{display:block;height:15px;background:#fff;position:absolute;top:0;left:0;width:1px;border:none;margin-top:0}.colorpicker.colorpicker-horizontal .colorpicker-hue{background-image:url(../img/bootstrap-colorpicker/hue-horizontal.png)}.colorpicker.colorpicker-horizontal .colorpicker-alpha{background-image:url(../img/bootstrap-colorpicker/alpha-horizontal.png)}.colorpicker.colorpicker-hidden{display:none}.colorpicker.colorpicker-visible{display:block}.colorpicker-inline.colorpicker-visible{display:inline-block}.colorpicker-right:before{left:auto;right:6px}.colorpicker-right:after{left:auto;right:7px}.colorpicker-no-arrow:before{border-right:0;border-left:0}.colorpicker-no-arrow:after{border-right:0;border-left:0}
-/*# sourceMappingURL=bootstrap-colorpicker.min.css.map */
\ No newline at end of file
diff --git a/public/lib/js/bootstrap-color-picker/css/bootstrap-colorpicker.min.css.map b/public/lib/js/bootstrap-color-picker/css/bootstrap-colorpicker.min.css.map
deleted file mode 100644
index f61ccb3e..00000000
--- a/public/lib/js/bootstrap-color-picker/css/bootstrap-colorpicker.min.css.map
+++ /dev/null
@@ -1 +0,0 @@
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\ No newline at end of file
diff --git a/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/alpha-horizontal.png b/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/alpha-horizontal.png
deleted file mode 100644
index f8318895..00000000
Binary files a/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/alpha-horizontal.png and /dev/null differ
diff --git a/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/alpha.png b/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/alpha.png
deleted file mode 100644
index 2e53a30e..00000000
Binary files a/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/alpha.png and /dev/null differ
diff --git a/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/hue-horizontal.png b/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/hue-horizontal.png
deleted file mode 100644
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diff --git a/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/saturation.png b/public/lib/js/bootstrap-color-picker/img/bootstrap-colorpicker/saturation.png
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diff --git a/public/lib/js/bootstrap-color-picker/js/bootstrap-colorpicker.min.js b/public/lib/js/bootstrap-color-picker/js/bootstrap-colorpicker.min.js
deleted file mode 100644
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--- a/public/lib/js/bootstrap-color-picker/js/bootstrap-colorpicker.min.js
+++ /dev/null
@@ -1,5 +0,0 @@
-/*!
- * Bootstrap Colorpicker v2.3.6
- * https://itsjavi.com/bootstrap-colorpicker/
- */
-!function(a){"use strict";"object"==typeof exports?module.exports=a(window.jQuery):"function"==typeof define&&define.amd?define(["jquery"],a):window.jQuery&&!window.jQuery.fn.colorpicker&&a(window.jQuery)}(function(a){"use strict";var b=function(b,c){this.value={h:0,s:0,b:0,a:1},this.origFormat=null,c&&a.extend(this.colors,c),b&&(void 0!==b.toLowerCase?(b+="",this.setColor(b)):void 0!==b.h&&(this.value=b))};b.prototype={constructor:b,colors:{aliceblue:"#f0f8ff",antiquewhite:"#faebd7",aqua:"#00ffff",aquamarine:"#7fffd4",azure:"#f0ffff",beige:"#f5f5dc",bisque:"#ffe4c4",black:"#000000",blanchedalmond:"#ffebcd",blue:"#0000ff",blueviolet:"#8a2be2",brown:"#a52a2a",burlywood:"#deb887",cadetblue:"#5f9ea0",chartreuse:"#7fff00",chocolate:"#d2691e",coral:"#ff7f50",cornflowerblue:"#6495ed",cornsilk:"#fff8dc",crimson:"#dc143c",cyan:"#00ffff",darkblue:"#00008b",darkcyan:"#008b8b",darkgoldenrod:"#b8860b",darkgray:"#a9a9a9",darkgreen:"#006400",darkkhaki:"#bdb76b",darkmagenta:"#8b008b",darkolivegreen:"#556b2f",darkorange:"#ff8c00",darkorchid:"#9932cc",darkred:"#8b0000",darksalmon:"#e9967a",darkseagreen:"#8fbc8f",darkslateblue:"#483d8b",darkslategray:"#2f4f4f",darkturquoise:"#00ced1",darkviolet:"#9400d3",deeppink:"#ff1493",deepskyblue:"#00bfff",dimgray:"#696969",dodgerblue:"#1e90ff",firebrick:"#b22222",floralwhite:"#fffaf0",forestgreen:"#228b22",fuchsia:"#ff00ff",gainsboro:"#dcdcdc",ghostwhite:"#f8f8ff",gold:"#ffd700",goldenrod:"#daa520",gray:"#808080",green:"#008000",greenyellow:"#adff2f",honeydew:"#f0fff0",hotpink:"#ff69b4",indianred:"#cd5c5c",indigo:"#4b0082",ivory:"#fffff0",khaki:"#f0e68c",lavender:"#e6e6fa",lavenderblush:"#fff0f5",lawngreen:"#7cfc00",lemonchiffon:"#fffacd",lightblue:"#add8e6",lightcoral:"#f08080",lightcyan:"#e0ffff",lightgoldenrodyellow:"#fafad2",lightgrey:"#d3d3d3",lightgreen:"#90ee90",lightpink:"#ffb6c1",lightsalmon:"#ffa07a",lightseagreen:"#20b2aa",lightskyblue:"#87cefa",lightslategray:"#778899",lightsteelblue:"#b0c4de",lightyellow:"#ffffe0",lime:"#00ff00",limegreen:"#32cd32",linen:"#faf0e6",magenta:"#ff00ff",maroon:"#800000",mediumaquamarine:"#66cdaa",mediumblue:"#0000cd",mediumorchid:"#ba55d3",mediumpurple:"#9370d8",mediumseagreen:"#3cb371",mediumslateblue:"#7b68ee",mediumspringgreen:"#00fa9a",mediumturquoise:"#48d1cc",mediumvioletred:"#c71585",midnightblue:"#191970",mintcream:"#f5fffa",mistyrose:"#ffe4e1",moccasin:"#ffe4b5",navajowhite:"#ffdead",navy:"#000080",oldlace:"#fdf5e6",olive:"#808000",olivedrab:"#6b8e23",orange:"#ffa500",orangered:"#ff4500",orchid:"#da70d6",palegoldenrod:"#eee8aa",palegreen:"#98fb98",paleturquoise:"#afeeee",palevioletred:"#d87093",papayawhip:"#ffefd5",peachpuff:"#ffdab9",peru:"#cd853f",pink:"#ffc0cb",plum:"#dda0dd",powderblue:"#b0e0e6",purple:"#800080",red:"#ff0000",rosybrown:"#bc8f8f",royalblue:"#4169e1",saddlebrown:"#8b4513",salmon:"#fa8072",sandybrown:"#f4a460",seagreen:"#2e8b57",seashell:"#fff5ee",sienna:"#a0522d",silver:"#c0c0c0",skyblue:"#87ceeb",slateblue:"#6a5acd",slategray:"#708090",snow:"#fffafa",springgreen:"#00ff7f",steelblue:"#4682b4",tan:"#d2b48c",teal:"#008080",thistle:"#d8bfd8",tomato:"#ff6347",turquoise:"#40e0d0",violet:"#ee82ee",wheat:"#f5deb3",white:"#ffffff",whitesmoke:"#f5f5f5",yellow:"#ffff00",yellowgreen:"#9acd32",transparent:"transparent"},_sanitizeNumber:function(a){return"number"==typeof a?a:isNaN(a)||null===a||""===a||void 0===a?1:""===a?0:void 0!==a.toLowerCase?(a.match(/^\./)&&(a="0"+a),Math.ceil(100*parseFloat(a))/100):1},isTransparent:function(a){return!!a&&(a=a.toLowerCase().trim(),"transparent"===a||a.match(/#?00000000/)||a.match(/(rgba|hsla)\(0,0,0,0?\.?0\)/))},rgbaIsTransparent:function(a){return 0===a.r&&0===a.g&&0===a.b&&0===a.a},setColor:function(a){a=a.toLowerCase().trim(),a&&(this.isTransparent(a)?this.value={h:0,s:0,b:0,a:0}:this.value=this.stringToHSB(a)||{h:0,s:0,b:0,a:1})},stringToHSB:function(b){b=b.toLowerCase();var c;"undefined"!=typeof this.colors[b]&&(b=this.colors[b],c="alias");var d=this,e=!1;return a.each(this.stringParsers,function(a,f){var g=f.re.exec(b),h=g&&f.parse.apply(d,[g]),i=c||f.format||"rgba";return!h||(e=i.match(/hsla?/)?d.RGBtoHSB.apply(d,d.HSLtoRGB.apply(d,h)):d.RGBtoHSB.apply(d,h),d.origFormat=i,!1)}),e},setHue:function(a){this.value.h=1-a},setSaturation:function(a){this.value.s=a},setBrightness:function(a){this.value.b=1-a},setAlpha:function(a){this.value.a=Math.round(parseInt(100*(1-a),10)/100*100)/100},toRGB:function(a,b,c,d){a||(a=this.value.h,b=this.value.s,c=this.value.b),a*=360;var e,f,g,h,i;return a=a%360/60,i=c*b,h=i*(1-Math.abs(a%2-1)),e=f=g=c-i,a=~~a,e+=[i,h,0,0,h,i][a],f+=[h,i,i,h,0,0][a],g+=[0,0,h,i,i,h][a],{r:Math.round(255*e),g:Math.round(255*f),b:Math.round(255*g),a:d||this.value.a}},toHex:function(a,b,c,d){var e=this.toRGB(a,b,c,d);return this.rgbaIsTransparent(e)?"transparent":"#"+(1<<24|parseInt(e.r)<<16|parseInt(e.g)<<8|parseInt(e.b)).toString(16).substr(1)},toHSL:function(a,b,c,d){a=a||this.value.h,b=b||this.value.s,c=c||this.value.b,d=d||this.value.a;var e=a,f=(2-b)*c,g=b*c;return g/=f>0&&f<=1?f:2-f,f/=2,g>1&&(g=1),{h:isNaN(e)?0:e,s:isNaN(g)?0:g,l:isNaN(f)?0:f,a:isNaN(d)?0:d}},toAlias:function(a,b,c,d){var e=this.toHex(a,b,c,d);for(var f in this.colors)if(this.colors[f]===e)return f;return!1},RGBtoHSB:function(a,b,c,d){a/=255,b/=255,c/=255;var e,f,g,h;return g=Math.max(a,b,c),h=g-Math.min(a,b,c),e=0===h?null:g===a?(b-c)/h:g===b?(c-a)/h+2:(a-b)/h+4,e=(e+360)%6*60/360,f=0===h?0:h/g,{h:this._sanitizeNumber(e),s:f,b:g,a:this._sanitizeNumber(d)}},HueToRGB:function(a,b,c){return c<0?c+=1:c>1&&(c-=1),6*c<1?a+(b-a)*c*6:2*c<1?b:3*c<2?a+(b-a)*(2/3-c)*6:a},HSLtoRGB:function(a,b,c,d){b<0&&(b=0);var e;e=c<=.5?c*(1+b):c+b-c*b;var f=2*c-e,g=a+1/3,h=a,i=a-1/3,j=Math.round(255*this.HueToRGB(f,e,g)),k=Math.round(255*this.HueToRGB(f,e,h)),l=Math.round(255*this.HueToRGB(f,e,i));return[j,k,l,this._sanitizeNumber(d)]},toString:function(a){a=a||"rgba";var b=!1;switch(a){case"rgb":return b=this.toRGB(),this.rgbaIsTransparent(b)?"transparent":"rgb("+b.r+","+b.g+","+b.b+")";case"rgba":return b=this.toRGB(),"rgba("+b.r+","+b.g+","+b.b+","+b.a+")";case"hsl":return b=this.toHSL(),"hsl("+Math.round(360*b.h)+","+Math.round(100*b.s)+"%,"+Math.round(100*b.l)+"%)";case"hsla":return b=this.toHSL(),"hsla("+Math.round(360*b.h)+","+Math.round(100*b.s)+"%,"+Math.round(100*b.l)+"%,"+b.a+")";case"hex":return this.toHex();case"alias":return this.toAlias()||this.toHex();default:return b}},stringParsers:[{re:/rgb\(\s*(\d{1,3})\s*,\s*(\d{1,3})\s*,\s*(\d{1,3})\s*?\)/,format:"rgb",parse:function(a){return[a[1],a[2],a[3],1]}},{re:/rgb\(\s*(\d*(?:\.\d+)?)\%\s*,\s*(\d*(?:\.\d+)?)\%\s*,\s*(\d*(?:\.\d+)?)\%\s*?\)/,format:"rgb",parse:function(a){return[2.55*a[1],2.55*a[2],2.55*a[3],1]}},{re:/rgba\(\s*(\d{1,3})\s*,\s*(\d{1,3})\s*,\s*(\d{1,3})\s*(?:,\s*(\d*(?:\.\d+)?)\s*)?\)/,format:"rgba",parse:function(a){return[a[1],a[2],a[3],a[4]]}},{re:/rgba\(\s*(\d*(?:\.\d+)?)\%\s*,\s*(\d*(?:\.\d+)?)\%\s*,\s*(\d*(?:\.\d+)?)\%\s*(?:,\s*(\d*(?:\.\d+)?)\s*)?\)/,format:"rgba",parse:function(a){return[2.55*a[1],2.55*a[2],2.55*a[3],a[4]]}},{re:/hsl\(\s*(\d*(?:\.\d+)?)\s*,\s*(\d*(?:\.\d+)?)\%\s*,\s*(\d*(?:\.\d+)?)\%\s*?\)/,format:"hsl",parse:function(a){return[a[1]/360,a[2]/100,a[3]/100,a[4]]}},{re:/hsla\(\s*(\d*(?:\.\d+)?)\s*,\s*(\d*(?:\.\d+)?)\%\s*,\s*(\d*(?:\.\d+)?)\%\s*(?:,\s*(\d*(?:\.\d+)?)\s*)?\)/,format:"hsla",parse:function(a){return[a[1]/360,a[2]/100,a[3]/100,a[4]]}},{re:/#?([a-fA-F0-9]{2})([a-fA-F0-9]{2})([a-fA-F0-9]{2})/,format:"hex",parse:function(a){return[parseInt(a[1],16),parseInt(a[2],16),parseInt(a[3],16),1]}},{re:/#?([a-fA-F0-9])([a-fA-F0-9])([a-fA-F0-9])/,format:"hex",parse:function(a){return[parseInt(a[1]+a[1],16),parseInt(a[2]+a[2],16),parseInt(a[3]+a[3],16),1]}}],colorNameToHex:function(a){return"undefined"!=typeof this.colors[a.toLowerCase()]&&this.colors[a.toLowerCase()]}};var c={horizontal:!1,inline:!1,color:!1,format:!1,input:"input",container:!1,component:".add-on, .input-group-addon",sliders:{saturation:{maxLeft:100,maxTop:100,callLeft:"setSaturation",callTop:"setBrightness"},hue:{maxLeft:0,maxTop:100,callLeft:!1,callTop:"setHue"},alpha:{maxLeft:0,maxTop:100,callLeft:!1,callTop:"setAlpha"}},slidersHorz:{saturation:{maxLeft:100,maxTop:100,callLeft:"setSaturation",callTop:"setBrightness"},hue:{maxLeft:100,maxTop:0,callLeft:"setHue",callTop:!1},alpha:{maxLeft:100,maxTop:0,callLeft:"setAlpha",callTop:!1}},template:'<div class="colorpicker dropdown-menu"><div class="colorpicker-saturation"><i><b></b></i></div><div class="colorpicker-hue"><i></i></div><div class="colorpicker-alpha"><i></i></div><div class="colorpicker-color"><div /></div><div class="colorpicker-selectors"></div></div>',align:"right",customClass:null,colorSelectors:null},d=function(d,e){if(this.element=a(d).addClass("colorpicker-element"),this.options=a.extend(!0,{},c,this.element.data(),e),this.component=this.options.component,this.component=this.component!==!1&&this.element.find(this.component),this.component&&0===this.component.length&&(this.component=!1),this.container=this.options.container===!0?this.element:this.options.container,this.container=this.container!==!1&&a(this.container),this.input=this.element.is("input")?this.element:!!this.options.input&&this.element.find(this.options.input),this.input&&0===this.input.length&&(this.input=!1),this.color=new b(this.options.color!==!1?this.options.color:this.getValue(),this.options.colorSelectors),this.format=this.options.format!==!1?this.options.format:this.color.origFormat,this.options.color!==!1&&(this.updateInput(this.color),this.updateData(this.color)),this.picker=a(this.options.template),this.options.customClass&&this.picker.addClass(this.options.customClass),this.options.inline?this.picker.addClass("colorpicker-inline colorpicker-visible"):this.picker.addClass("colorpicker-hidden"),this.options.horizontal&&this.picker.addClass("colorpicker-horizontal"),"rgba"!==this.format&&"hsla"!==this.format&&this.options.format!==!1||this.picker.addClass("colorpicker-with-alpha"),"right"===this.options.align&&this.picker.addClass("colorpicker-right"),this.options.inline===!0&&this.picker.addClass("colorpicker-no-arrow"),this.options.colorSelectors){var f=this;a.each(this.options.colorSelectors,function(b,c){var d=a("<i />").css("background-color",c).data("class",b);d.click(function(){f.setValue(a(this).css("background-color"))}),f.picker.find(".colorpicker-selectors").append(d)}),this.picker.find(".colorpicker-selectors").show()}this.picker.on("mousedown.colorpicker touchstart.colorpicker",a.proxy(this.mousedown,this)),this.picker.appendTo(this.container?this.container:a("body")),this.input!==!1&&(this.input.on({"keyup.colorpicker":a.proxy(this.keyup,this)}),this.input.on({"change.colorpicker":a.proxy(this.change,this)}),this.component===!1&&this.element.on({"focus.colorpicker":a.proxy(this.show,this)}),this.options.inline===!1&&this.element.on({"focusout.colorpicker":a.proxy(this.hide,this)})),this.component!==!1&&this.component.on({"click.colorpicker":a.proxy(this.show,this)}),this.input===!1&&this.component===!1&&this.element.on({"click.colorpicker":a.proxy(this.show,this)}),this.input!==!1&&this.component!==!1&&"color"===this.input.attr("type")&&this.input.on({"click.colorpicker":a.proxy(this.show,this),"focus.colorpicker":a.proxy(this.show,this)}),this.update(),a(a.proxy(function(){this.element.trigger("create")},this))};d.Color=b,d.prototype={constructor:d,destroy:function(){this.picker.remove(),this.element.removeData("colorpicker","color").off(".colorpicker"),this.input!==!1&&this.input.off(".colorpicker"),this.component!==!1&&this.component.off(".colorpicker"),this.element.removeClass("colorpicker-element"),this.element.trigger({type:"destroy"})},reposition:function(){if(this.options.inline!==!1||this.options.container)return!1;var a=this.container&&this.container[0]!==document.body?"position":"offset",b=this.component||this.element,c=b[a]();"right"===this.options.align&&(c.left-=this.picker.outerWidth()-b.outerWidth()),this.picker.css({top:c.top+b.outerHeight(),left:c.left})},show:function(b){return!this.isDisabled()&&(this.picker.addClass("colorpicker-visible").removeClass("colorpicker-hidden"),this.reposition(),a(window).on("resize.colorpicker",a.proxy(this.reposition,this)),!b||this.hasInput()&&"color"!==this.input.attr("type")||b.stopPropagation&&b.preventDefault&&(b.stopPropagation(),b.preventDefault()),!this.component&&this.input||this.options.inline!==!1||a(window.document).on({"mousedown.colorpicker":a.proxy(this.hide,this)}),void this.element.trigger({type:"showPicker",color:this.color}))},hide:function(){this.picker.addClass("colorpicker-hidden").removeClass("colorpicker-visible"),a(window).off("resize.colorpicker",this.reposition),a(document).off({"mousedown.colorpicker":this.hide}),this.update(),this.element.trigger({type:"hidePicker",color:this.color})},updateData:function(a){return a=a||this.color.toString(this.format),this.element.data("color",a),a},updateInput:function(a){if(a=a||this.color.toString(this.format),this.input!==!1){if(this.options.colorSelectors){var c=new b(a,this.options.colorSelectors),d=c.toAlias();"undefined"!=typeof this.options.colorSelectors[d]&&(a=d)}this.input.prop("value",a)}return a},updatePicker:function(a){void 0!==a&&(this.color=new b(a,this.options.colorSelectors));var c=this.options.horizontal===!1?this.options.sliders:this.options.slidersHorz,d=this.picker.find("i");if(0!==d.length)return this.options.horizontal===!1?(c=this.options.sliders,d.eq(1).css("top",c.hue.maxTop*(1-this.color.value.h)).end().eq(2).css("top",c.alpha.maxTop*(1-this.color.value.a))):(c=this.options.slidersHorz,d.eq(1).css("left",c.hue.maxLeft*(1-this.color.value.h)).end().eq(2).css("left",c.alpha.maxLeft*(1-this.color.value.a))),d.eq(0).css({top:c.saturation.maxTop-this.color.value.b*c.saturation.maxTop,left:this.color.value.s*c.saturation.maxLeft}),this.picker.find(".colorpicker-saturation").css("backgroundColor",this.color.toHex(this.color.value.h,1,1,1)),this.picker.find(".colorpicker-alpha").css("backgroundColor",this.color.toHex()),this.picker.find(".colorpicker-color, .colorpicker-color div").css("backgroundColor",this.color.toString(this.format)),a},updateComponent:function(a){if(a=a||this.color.toString(this.format),this.component!==!1){var b=this.component.find("i").eq(0);b.length>0?b.css({backgroundColor:a}):this.component.css({backgroundColor:a})}return a},update:function(a){var b;return this.getValue(!1)===!1&&a!==!0||(b=this.updateComponent(),this.updateInput(b),this.updateData(b),this.updatePicker()),b},setValue:function(a){this.color=new b(a,this.options.colorSelectors),this.update(!0),this.element.trigger({type:"changeColor",color:this.color,value:a})},getValue:function(a){a=void 0===a?"#000000":a;var b;return b=this.hasInput()?this.input.val():this.element.data("color"),void 0!==b&&""!==b&&null!==b||(b=a),b},hasInput:function(){return this.input!==!1},isDisabled:function(){return!!this.hasInput()&&this.input.prop("disabled")===!0},disable:function(){return!!this.hasInput()&&(this.input.prop("disabled",!0),this.element.trigger({type:"disable",color:this.color,value:this.getValue()}),!0)},enable:function(){return!!this.hasInput()&&(this.input.prop("disabled",!1),this.element.trigger({type:"enable",color:this.color,value:this.getValue()}),!0)},currentSlider:null,mousePointer:{left:0,top:0},mousedown:function(b){!b.pageX&&!b.pageY&&b.originalEvent&&b.originalEvent.touches&&(b.pageX=b.originalEvent.touches[0].pageX,b.pageY=b.originalEvent.touches[0].pageY),b.stopPropagation(),b.preventDefault();var c=a(b.target),d=c.closest("div"),e=this.options.horizontal?this.options.slidersHorz:this.options.sliders;if(!d.is(".colorpicker")){if(d.is(".colorpicker-saturation"))this.currentSlider=a.extend({},e.saturation);else if(d.is(".colorpicker-hue"))this.currentSlider=a.extend({},e.hue);else{if(!d.is(".colorpicker-alpha"))return!1;this.currentSlider=a.extend({},e.alpha)}var f=d.offset();this.currentSlider.guide=d.find("i")[0].style,this.currentSlider.left=b.pageX-f.left,this.currentSlider.top=b.pageY-f.top,this.mousePointer={left:b.pageX,top:b.pageY},a(document).on({"mousemove.colorpicker":a.proxy(this.mousemove,this),"touchmove.colorpicker":a.proxy(this.mousemove,this),"mouseup.colorpicker":a.proxy(this.mouseup,this),"touchend.colorpicker":a.proxy(this.mouseup,this)}).trigger("mousemove")}return!1},mousemove:function(a){!a.pageX&&!a.pageY&&a.originalEvent&&a.originalEvent.touches&&(a.pageX=a.originalEvent.touches[0].pageX,a.pageY=a.originalEvent.touches[0].pageY),a.stopPropagation(),a.preventDefault();var b=Math.max(0,Math.min(this.currentSlider.maxLeft,this.currentSlider.left+((a.pageX||this.mousePointer.left)-this.mousePointer.left))),c=Math.max(0,Math.min(this.currentSlider.maxTop,this.currentSlider.top+((a.pageY||this.mousePointer.top)-this.mousePointer.top)));return this.currentSlider.guide.left=b+"px",this.currentSlider.guide.top=c+"px",this.currentSlider.callLeft&&this.color[this.currentSlider.callLeft].call(this.color,b/this.currentSlider.maxLeft),this.currentSlider.callTop&&this.color[this.currentSlider.callTop].call(this.color,c/this.currentSlider.maxTop),"setAlpha"===this.currentSlider.callTop&&this.options.format===!1&&(1!==this.color.value.a?(this.format="rgba",this.color.origFormat="rgba"):(this.format="hex",this.color.origFormat="hex")),this.update(!0),this.element.trigger({type:"changeColor",color:this.color}),!1},mouseup:function(b){return b.stopPropagation(),b.preventDefault(),a(document).off({"mousemove.colorpicker":this.mousemove,"touchmove.colorpicker":this.mousemove,"mouseup.colorpicker":this.mouseup,"touchend.colorpicker":this.mouseup}),!1},change:function(a){this.keyup(a)},keyup:function(a){38===a.keyCode?(this.color.value.a<1&&(this.color.value.a=Math.round(100*(this.color.value.a+.01))/100),this.update(!0)):40===a.keyCode?(this.color.value.a>0&&(this.color.value.a=Math.round(100*(this.color.value.a-.01))/100),this.update(!0)):(this.color=new b(this.input.val(),this.options.colorSelectors),this.color.origFormat&&this.options.format===!1&&(this.format=this.color.origFormat),this.getValue(!1)!==!1&&(this.updateData(),this.updateComponent(),this.updatePicker())),this.element.trigger({type:"changeColor",color:this.color,value:this.input.val()})}},a.colorpicker=d,a.fn.colorpicker=function(b){var c=Array.prototype.slice.call(arguments,1),e=1===this.length,f=null,g=this.each(function(){var e=a(this),g=e.data("colorpicker"),h="object"==typeof b?b:{};g||(g=new d(this,h),e.data("colorpicker",g)),"string"==typeof b?a.isFunction(g[b])?f=g[b].apply(g,c):(c.length&&(g[b]=c[0]),f=g[b]):f=e});return e?f:g},a.fn.colorpicker.constructor=d});
\ No newline at end of file
diff --git a/public/src/css/sass/_notificationStyles.scss b/public/src/css/sass/_notificationStyles.scss
index 6b50ca0e..064101e3 100644
--- a/public/src/css/sass/_notificationStyles.scss
+++ b/public/src/css/sass/_notificationStyles.scss
@@ -1,8 +1,5 @@
-[data-notify="container"][class*="alert-pastel-"]
+[data-notify="container"][class*="alert-pathwayMapper-"]
 {
-  background-color: $menuHoverColor;
-  color: #FFFFFF;
-
   .close{
     opacity: 1.0;
     color: #FFFFFF;
@@ -14,13 +11,23 @@
     color: #FFFFFF;
   }
 }
-//[data-notify="container"].alert-pastel-info {
-//  border-left-color: rgb(255, 179, 40);
-//}
+
+[data-notify="container"].alert-pathwayMapper-success
+{
+    background-color: $menuHoverColor;
+      color: #FFFFFF;
+}
+
+[data-notify="container"].alert-pathwayMapper-fail
+{
+  background-color: #ff2644;
+  color: #FFFFFF;
+}
+
 //[data-notify="container"].alert-pastel-danger {
 //  border-left-color: rgb(255, 103, 76);
 //}
 
-[data-notify="container"][class*="alert-pastel-"] > [data-notify="message"] {
+[data-notify="container"][class*="alert-pathwayMapper-"] > [data-notify="message"] {
   //font-weight: 400;
 }
\ No newline at end of file
diff --git a/public/src/css/sass/base.scss b/public/src/css/sass/base.scss
index 6b0214d0..acd716f9 100755
--- a/public/src/css/sass/base.scss
+++ b/public/src/css/sass/base.scss
@@ -14,6 +14,10 @@
 @import "animate";
 @import "notificationStyles";
 
+.gridModal{
+    width: 300px !important;
+}
+
 
 body {
   font: 14px helvetica neue, helvetica, arial, sans-serif;
@@ -22,12 +26,14 @@ body {
 
 $appContentHeight: 850px;
 
-#colorPickerInput
+input[type="color"]
 {
-  width: 287px;
-  border-top-right-radius: 0px !important;
-  border-bottom-right-radius: 0 !important;
 
+  padding: 2px 2px 2px 2px;
+}
+
+input[type="color"]:hover{
+  cursor: pointer;
 }
 
 #colorPickerButton
diff --git a/public/src/js/AppManager.js b/public/src/js/AppManager.js
index 9f05fb5b..e77253d9 100644
--- a/public/src/js/AppManager.js
+++ b/public/src/js/AppManager.js
@@ -9,6 +9,7 @@ var regCose = require("../../lib/js/cose-bilkent/src/index.js");
 var grid_guide = require('cytoscape-grid-guide');
 var undoRedo = require('cytoscape-undo-redo');
 var contextMenus = require('cytoscape-context-menus');
+require('bootstrap-select');
 
 
 //Panzoom options
@@ -27,7 +28,6 @@ require('./OtherMenuOperations.js');
 require('./GenomicMenuOperations.js');
 require('./ViewOperationsManager.js');
 require('./GraphUtilities.js');
-require('bootstrap-select');
 
 var QtipManager = require('./QtipManager.js');
 var ContextMenuManager = require('./ContextMenuManager.js');
@@ -37,6 +37,7 @@ var SaveLoadUtilities = require('./SaveLoadUtility.js');
 var CBioPortalAccessor = require('./cBioPortalAccessor.js');
 
 var notify = require('bootstrap-notify');
+window.notificationManager = require('./NotificationFactory');
 
  module.exports = (function()
  {
@@ -362,7 +363,7 @@ var notify = require('bootstrap-notify');
             cy.style().update();
             cy.forceRender();
         });
-        
+
     };
 
     return AppManager;
diff --git a/public/src/js/BackboneViews/GridOptionsView.js b/public/src/js/BackboneViews/GridOptionsView.js
index a27a7787..5053058c 100644
--- a/public/src/js/BackboneViews/GridOptionsView.js
+++ b/public/src/js/BackboneViews/GridOptionsView.js
@@ -39,8 +39,6 @@ var gridOptionsView = Backbone.View.extend(
             var tplContent = this.template(templateProperties);
             this.$el.empty();
             this.$el.append(tplContent);
-            this.$el.find('#colorPickerDiv').colorpicker();
-
             this.delegateEvents();
         },
         saveProperties: function(event)
@@ -49,7 +47,7 @@ var gridOptionsView = Backbone.View.extend(
             this.currentProperties.drawGrid = this.$el.find("#showGrid").is(':checked');
             this.currentProperties.guidelines = this.$el.find("#showGuides").is(':checked');
             this.currentProperties.snapToGrid = this.$el.find("#snapToGrid").is(':checked');
-            this.currentProperties.guidelinesStyle.strokeStyle = this.$el.find("#colorPickerInput").val();
+            this.currentProperties.guidelinesStyle.strokeStyle = this.$el.find('input[type="color"]').val();
 
 
             //TODO update grid options
@@ -62,7 +60,7 @@ var gridOptionsView = Backbone.View.extend(
             this.$el.find("#gridSize").val(this.currentProperties.gridSize);
             this.$el.find("#showGrid")[0].checked = this.currentProperties.showGrid;
             this.$el.find("#showGuides")[0].checked = this.currentProperties.showGuides;
-            this.$el.find("#colorPickerInput").val(this.currentProperties.guidelinesStyle.strokeStyle);
+            this.$el.find('input[type="color"]').val(this.currentProperties.guidelinesStyle.strokeStyle);
         },
         defaultLayoutHandler: function(event)
         {
diff --git a/public/src/js/NotificationFactory.js b/public/src/js/NotificationFactory.js
new file mode 100644
index 00000000..a715cea7
--- /dev/null
+++ b/public/src/js/NotificationFactory.js
@@ -0,0 +1,52 @@
+module.exports = (function ($)
+{
+    
+    function NotificationFactory()
+    {
+    }
+
+    function mapTypeToCSSStyle(type)
+    {
+        if (type === "success")
+            return "pathwayMapper-success"
+        else if (type === "fail")
+            return "pathwayMapper-fail"
+            
+    }
+    
+    NotificationFactory.prototype.createNotification = function(message, type)
+    {
+
+        var mappedCSSClass = mapTypeToCSSStyle(type);
+
+        $.notify({
+            // options
+            icon: 'glyphicon glyphicon-ok',
+            message: message
+        },{
+            // settings
+            element: 'body',
+            position: null,
+            type: mappedCSSClass,
+            allow_dismiss: true,
+            newest_on_top: false,
+            showProgressbar: false,
+            placement: {
+                from: "bottom",
+                align: "right"
+            },
+            delay: 5000,
+            offset: 20,
+            spacing: 10,
+            z_index: 1031,
+            mouse_over: null,
+            animate: {
+                enter: 'animated fadeInUp',
+                exit: 'animated fadeOut'
+            }
+        });
+    }
+
+    return new NotificationFactory();
+
+})(window.$);
\ No newline at end of file
diff --git a/public/src/js/OtherMenuOperations.js b/public/src/js/OtherMenuOperations.js
index 618a43ab..58c0f389 100644
--- a/public/src/js/OtherMenuOperations.js
+++ b/public/src/js/OtherMenuOperations.js
@@ -26,33 +26,6 @@ module.exports = (function()
     //Edit drop down handler
     $(".editDropDown li a").click(function(event)
     {
-        $.notify({
-            // options
-            icon: 'glyphicon glyphicon-ok',
-            message: 'Data is loaded ...',
-        },{
-            // settings
-            element: 'body',
-            position: null,
-            type: "pastel-warning",
-            allow_dismiss: true,
-            newest_on_top: false,
-            showProgressbar: false,
-            placement: {
-                from: "bottom",
-                align: "right"
-            },
-            delay: 0,
-            offset: 20,
-            spacing: 10,
-            z_index: 1031,
-            mouse_over: null,
-            animate: {
-                enter: 'animated fadeInUp',
-                exit: 'animated fadeOut'
-            }
-        });
-
         event.preventDefault();
         var dropdownLinkRole = $(event.target).attr('role');
 
diff --git a/public/src/js/cBioPortalAccessor.js b/public/src/js/cBioPortalAccessor.js
index b4853ced..b05cafa1 100644
--- a/public/src/js/cBioPortalAccessor.js
+++ b/public/src/js/cBioPortalAccessor.js
@@ -48,6 +48,10 @@ module.exports = (function()
                 }
                 callbackFunction(cancerStudies);
             }
+            else if  (request.readyState === XMLHttpRequest.DONE && request.status != 200)
+            {
+                window.notificationManager.createNotification("Error retrieving cancer studies", "fail")
+            }
         };
         request.open("GET", this.GET_ALL_CANCER_STUDIES_URL);
         request.send();
@@ -86,6 +90,10 @@ module.exports = (function()
 
                 callbackFunction(outData);
             }
+            else if (request.readyState === XMLHttpRequest.DONE && request.status != 200)
+            {
+                window.notificationManager.createNotification("Error retrieving genetic profiles", "fail")
+            }
         };
         request.open("GET", this.GET_GENETIC_PROFILES_URL + cancerStudy);
         request.send();
@@ -195,6 +203,10 @@ module.exports = (function()
             if(request.readyState === XMLHttpRequest.DONE && request.status === 200)
             {
                 self.calcAlterationPercentages(request.responseText, params.geneticProfileId, callbackFunction);
+                window.notificationManager.createNotification(
+                    "Profile data " + params.geneticProfileId + " is succesfully loaded from cBioPortal ",
+                    "success");
+
             }
         };