galaxyRPthermo.xml

<tool id="rpRankerThermo" name="RP thermodynamics" version="1.0">
  <description>Calculate the formation enery of the individual species, reactions and pathways from the heterologous RP2paths SBML files</description>
  <requirements>
    <container type="docker">ibisba/rpranker:latest</container>
  </requirements>
  <!--
  <stdio>
    <exit_code range="1:" level="error"/>
  </stdio>
  -->
  <stdio>
		<regex match="WARNING:" level="warning" />
		<regex match="ERROR:root:ChemAxon" level="warning" />
	</stdio>
  <command><![CDATA[
    '$__tool_directory__/wrapRPthermo.py' -inSBMLzip '$inSBMLzip' -outSBMLzip '$outSBMLzip'
  ]]></command>
  <inputs>
    <param name="inSBMLzip" type="data" format="zip" label="rpSBML" />
  </inputs>
  <outputs>
    <data name="outSBMLzip" format="zip" label="rpSBML+thermo" />
  </outputs>
  <help>`
   This is the help section. Should really write something usefull here :) 
  </help>
</tool>

<!-- 
    <param name="inSBMLtar" type="data" format="tar.xz" label="rpSBML" />
    <data name="outSBMLtar" format="tar.xz" label="rpSBML+thermo" />
'$__tool_directory__/wrapRPthermo.py' -inSBMLtar '$inSBMLtar' -outSBMLtar '$outSBMLtar'
		
-->