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using igvtools to index #1626

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newbiezubi opened this issue Dec 3, 2024 · 1 comment
Open

using igvtools to index #1626

newbiezubi opened this issue Dec 3, 2024 · 1 comment

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@newbiezubi
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hello,
I'm trying to index a .bed file to view in IGV desktop app. (it is RNA seq file that was sorted, aligned and pileup using modkit )
I got an error :"Unexpected data in columns 10-12, expected exon count, exon starts, and exon sizes. Found: 1 0.00 0 Columns > 9 will be ignored" and an output .idx file .
what happend?

thank you in advance

@jrobinso
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jrobinso commented Dec 3, 2024

What are you asking exactly? Is the message not clear?

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