Demultiplexing pipeline for illumina data (novaseq/miseq/nextseq). Continuation of Devon Ryan's TWTWTWTW.
Clone this repository, create the environment and pip install
git clone git@github.com:maxplanck-ie/dissectBCL.git
cd dissectBCL
conda create -f env.yml --name dissectBCL conda activate dissectBCL
pip install ./
Fill in the dissectBCL.ini file appropriately. By default the config file is expected to be in ~/configs/dissectBCL_prod.ini.
dissect
or
dissect -c /path/to/config.ini
Documentation is available here.