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Question: is bidsmri2nidm.py memoizing user's choices #274

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yarikoptic opened this issue Jul 1, 2021 · 1 comment
Open

Question: is bidsmri2nidm.py memoizing user's choices #274

yarikoptic opened this issue Jul 1, 2021 · 1 comment

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@yarikoptic
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Thinking about addressing "automation of bids2nidm" anotation within the scope of https://github.com/OpenNeuroDatasets-NIDM/nidm-openneuro-doc/issues/4 I wondered, since bidsmri2nidm.py asks user's input, and if dataset was updated (may be even just unrelated changes), if I rerun the script -- would it use the "knowledge" for the answers curator already previously gave?
@dbkeator
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Hi,
If you have a proper sidecar file that annotates all the variables in participants.tsv (or run the bidsmri2nidm script and save the JSON variable annotation mapping file) then you can run bidsmri2nidm with the -no_concepts parameter and giving it the name of the JSON variable annotation mapping file and it should run without any user interaction.

Dave

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@yarikoptic @dbkeator